Multiple sequence alignment - TraesCS7A01G308300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G308300 chr7A 100.000 6837 0 0 1 6837 436076633 436069797 0.000000e+00 12626.0
1 TraesCS7A01G308300 chr7A 91.624 2961 160 34 3377 6268 54191229 54188288 0.000000e+00 4013.0
2 TraesCS7A01G308300 chr7A 94.146 1657 60 11 3377 4999 54150285 54148632 0.000000e+00 2488.0
3 TraesCS7A01G308300 chr7A 86.687 1292 103 32 4995 6260 54147588 54146340 0.000000e+00 1369.0
4 TraesCS7A01G308300 chr7A 87.810 968 53 25 426 1357 54193630 54192692 0.000000e+00 1074.0
5 TraesCS7A01G308300 chr7A 94.326 564 28 2 2816 3379 54191855 54191296 0.000000e+00 861.0
6 TraesCS7A01G308300 chr7A 81.936 847 55 23 1587 2392 54192646 54191857 1.620000e-175 627.0
7 TraesCS7A01G308300 chr7A 87.434 565 38 18 1831 2392 54151634 54151100 2.710000e-173 619.0
8 TraesCS7A01G308300 chr7A 94.751 362 16 1 2816 3177 54151098 54150740 1.670000e-155 560.0
9 TraesCS7A01G308300 chr7A 94.712 208 11 0 3172 3379 54150584 54150377 2.380000e-84 324.0
10 TraesCS7A01G308300 chr7A 96.429 56 1 1 1773 1828 54151720 54151666 2.630000e-14 91.6
11 TraesCS7A01G308300 chr7D 94.242 4741 165 40 1603 6268 386663877 386659170 0.000000e+00 7143.0
12 TraesCS7A01G308300 chr7D 90.927 2061 112 34 4264 6268 51685914 51683873 0.000000e+00 2700.0
13 TraesCS7A01G308300 chr7D 93.212 1488 60 10 2816 4265 51687480 51685996 0.000000e+00 2150.0
14 TraesCS7A01G308300 chr7D 90.616 1087 61 13 426 1484 386664971 386663898 0.000000e+00 1404.0
15 TraesCS7A01G308300 chr7D 86.785 961 68 23 426 1357 51689244 51688314 0.000000e+00 1016.0
16 TraesCS7A01G308300 chr7D 82.979 846 47 24 1587 2392 51688270 51687482 0.000000e+00 675.0
17 TraesCS7A01G308300 chr7D 87.709 179 8 7 6319 6483 386658982 386658804 5.410000e-46 196.0
18 TraesCS7A01G308300 chr7B 97.007 2706 61 8 3380 6082 381511310 381508622 0.000000e+00 4530.0
19 TraesCS7A01G308300 chr7B 93.966 1790 71 14 1593 3372 381513160 381511398 0.000000e+00 2673.0
20 TraesCS7A01G308300 chr7B 87.071 1137 70 18 428 1507 381514263 381513147 0.000000e+00 1214.0
21 TraesCS7A01G308300 chr7B 98.122 426 8 0 5 430 168801698 168802123 0.000000e+00 743.0
22 TraesCS7A01G308300 chr7B 87.884 586 32 19 6282 6835 381508610 381508032 0.000000e+00 652.0
23 TraesCS7A01G308300 chr4A 92.898 1929 83 15 2760 4640 666061250 666059328 0.000000e+00 2754.0
24 TraesCS7A01G308300 chr4A 92.617 1043 61 8 4902 5937 666058517 666057484 0.000000e+00 1485.0
25 TraesCS7A01G308300 chr4A 91.052 1017 66 12 426 1422 666063114 666062103 0.000000e+00 1351.0
26 TraesCS7A01G308300 chr4A 87.162 592 42 12 1831 2418 666061808 666061247 5.780000e-180 641.0
27 TraesCS7A01G308300 chr4A 94.894 235 11 1 4676 4910 666059328 666059095 3.900000e-97 366.0
28 TraesCS7A01G308300 chr4A 82.197 264 5 10 1587 1835 666062072 666061836 9.050000e-44 189.0
29 TraesCS7A01G308300 chr6A 97.907 430 9 0 1 430 430349421 430348992 0.000000e+00 745.0
30 TraesCS7A01G308300 chr6A 97.907 430 9 0 1 430 474467826 474467397 0.000000e+00 745.0
31 TraesCS7A01G308300 chr5A 97.907 430 9 0 1 430 646047921 646047492 0.000000e+00 745.0
32 TraesCS7A01G308300 chr5A 86.774 310 38 3 5219 5528 493022222 493022528 6.570000e-90 342.0
33 TraesCS7A01G308300 chr5A 86.142 267 31 2 4914 5180 493021962 493022222 4.040000e-72 283.0
34 TraesCS7A01G308300 chr5A 85.768 267 32 2 4914 5180 607961730 607961990 1.880000e-70 278.0
35 TraesCS7A01G308300 chr3A 97.907 430 9 0 1 430 59454038 59454467 0.000000e+00 745.0
36 TraesCS7A01G308300 chr3A 97.907 430 9 0 1 430 130786407 130785978 0.000000e+00 745.0
37 TraesCS7A01G308300 chr3A 97.907 430 8 1 1 430 242084313 242084741 0.000000e+00 743.0
38 TraesCS7A01G308300 chr1A 97.907 430 9 0 1 430 300050068 300049639 0.000000e+00 745.0
39 TraesCS7A01G308300 chr1A 97.674 430 10 0 1 430 101062847 101063276 0.000000e+00 739.0
40 TraesCS7A01G308300 chr5B 89.032 310 31 1 5219 5528 100048073 100048379 1.390000e-101 381.0
41 TraesCS7A01G308300 chrUn 88.498 313 30 2 5219 5528 26776026 26776335 2.330000e-99 374.0
42 TraesCS7A01G308300 chrUn 86.692 263 27 4 4914 5175 26775766 26776021 1.120000e-72 285.0
43 TraesCS7A01G308300 chr1B 80.423 189 33 4 3822 4008 688762713 688762527 2.570000e-29 141.0
44 TraesCS7A01G308300 chr1B 79.365 189 30 8 3824 4008 455031874 455032057 2.590000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G308300 chr7A 436069797 436076633 6836 True 12626.000000 12626 100.000000 1 6837 1 chr7A.!!$R1 6836
1 TraesCS7A01G308300 chr7A 54188288 54193630 5342 True 1643.750000 4013 88.924000 426 6268 4 chr7A.!!$R3 5842
2 TraesCS7A01G308300 chr7A 54146340 54151720 5380 True 908.600000 2488 92.359833 1773 6260 6 chr7A.!!$R2 4487
3 TraesCS7A01G308300 chr7D 386658804 386664971 6167 True 2914.333333 7143 90.855667 426 6483 3 chr7D.!!$R2 6057
4 TraesCS7A01G308300 chr7D 51683873 51689244 5371 True 1635.250000 2700 88.475750 426 6268 4 chr7D.!!$R1 5842
5 TraesCS7A01G308300 chr7B 381508032 381514263 6231 True 2267.250000 4530 91.482000 428 6835 4 chr7B.!!$R1 6407
6 TraesCS7A01G308300 chr4A 666057484 666063114 5630 True 1131.000000 2754 90.136667 426 5937 6 chr4A.!!$R1 5511
7 TraesCS7A01G308300 chr5A 493021962 493022528 566 False 312.500000 342 86.458000 4914 5528 2 chr5A.!!$F2 614
8 TraesCS7A01G308300 chrUn 26775766 26776335 569 False 329.500000 374 87.595000 4914 5528 2 chrUn.!!$F1 614

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
102 103 0.036294 GGGACTCCGAACTCCTTTGG 60.036 60.000 0.00 0.00 32.46 3.28 F
241 242 0.107508 CGGAACCTGGATGCTCACAT 60.108 55.000 0.00 0.00 39.98 3.21 F
344 345 0.248907 TTGCCCGAGATTCGATCGTC 60.249 55.000 15.94 6.30 43.74 4.20 F
1077 1149 0.505655 AGTCGCGTCGCAAAAAGTAC 59.494 50.000 18.75 3.31 0.00 2.73 F
2063 2247 0.105401 GAGAGGAAGGGTAGGGGGAG 60.105 65.000 0.00 0.00 0.00 4.30 F
2530 2723 1.153823 AAATCTCACCGTCGAGGCG 60.154 57.895 0.00 0.00 46.52 5.52 F
3849 4326 2.267045 GTGGCCAAAAGCTACCCTG 58.733 57.895 7.24 0.00 46.71 4.45 F
4505 5112 0.687354 AGCTCATGACTTCCGTGGTT 59.313 50.000 0.00 0.00 32.64 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1059 1104 0.779561 CGTACTTTTTGCGACGCGAC 60.780 55.000 15.93 5.54 34.82 5.19 R
1597 1716 1.953311 GCCCTCTGCAACGGGATTTAA 60.953 52.381 21.12 0.00 43.44 1.52 R
2063 2247 3.798511 CCGCCTTCCTCTTCCCCC 61.799 72.222 0.00 0.00 0.00 5.40 R
2530 2723 0.328592 GGAGGTTCCTTCACCCCTTC 59.671 60.000 0.00 0.00 37.58 3.46 R
3795 4272 1.968540 GGGCAGTGAAGTGAGTGGC 60.969 63.158 0.00 0.00 40.33 5.01 R
4446 5047 2.968574 ACGATGCTGAGAGGGTCAATAT 59.031 45.455 0.00 0.00 33.60 1.28 R
5442 7702 0.609131 GCTAGCACCACCACCACATT 60.609 55.000 10.63 0.00 0.00 2.71 R
6261 8561 0.174162 ATGGCAAATTTCGGCAGAGC 59.826 50.000 17.20 4.91 42.76 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.761235 GATGTCCGAATATAGTCGTCCA 57.239 45.455 19.91 15.57 39.43 4.02
22 23 5.117355 GATGTCCGAATATAGTCGTCCAA 57.883 43.478 19.91 4.71 39.43 3.53
23 24 5.710984 GATGTCCGAATATAGTCGTCCAAT 58.289 41.667 19.91 8.89 39.43 3.16
24 25 6.829229 ATGTCCGAATATAGTCGTCCAATA 57.171 37.500 19.91 3.34 39.43 1.90
25 26 6.829229 TGTCCGAATATAGTCGTCCAATAT 57.171 37.500 19.91 0.00 39.43 1.28
26 27 7.926674 TGTCCGAATATAGTCGTCCAATATA 57.073 36.000 19.91 0.00 39.43 0.86
27 28 8.515695 TGTCCGAATATAGTCGTCCAATATAT 57.484 34.615 19.91 0.00 39.43 0.86
28 29 8.618677 TGTCCGAATATAGTCGTCCAATATATC 58.381 37.037 19.91 1.08 39.43 1.63
29 30 7.797587 GTCCGAATATAGTCGTCCAATATATCG 59.202 40.741 19.91 1.96 39.43 2.92
30 31 7.712205 TCCGAATATAGTCGTCCAATATATCGA 59.288 37.037 19.91 4.16 39.43 3.59
31 32 8.504815 CCGAATATAGTCGTCCAATATATCGAT 58.495 37.037 19.91 2.16 39.43 3.59
32 33 9.531412 CGAATATAGTCGTCCAATATATCGATC 57.469 37.037 14.13 0.00 36.26 3.69
38 39 7.242079 AGTCGTCCAATATATCGATCTTTACG 58.758 38.462 0.00 4.80 34.93 3.18
39 40 7.020010 GTCGTCCAATATATCGATCTTTACGT 58.980 38.462 0.00 0.00 34.93 3.57
40 41 7.215942 GTCGTCCAATATATCGATCTTTACGTC 59.784 40.741 0.00 0.00 34.93 4.34
41 42 7.118825 TCGTCCAATATATCGATCTTTACGTCT 59.881 37.037 0.00 0.00 0.00 4.18
42 43 7.425882 CGTCCAATATATCGATCTTTACGTCTC 59.574 40.741 0.00 0.00 0.00 3.36
43 44 7.425882 GTCCAATATATCGATCTTTACGTCTCG 59.574 40.741 0.00 0.00 0.00 4.04
44 45 7.332678 TCCAATATATCGATCTTTACGTCTCGA 59.667 37.037 0.00 0.00 43.43 4.04
45 46 7.425882 CCAATATATCGATCTTTACGTCTCGAC 59.574 40.741 0.00 0.00 42.26 4.20
46 47 3.605743 ATCGATCTTTACGTCTCGACC 57.394 47.619 0.00 0.00 42.26 4.79
47 48 2.349590 TCGATCTTTACGTCTCGACCA 58.650 47.619 0.00 0.00 35.41 4.02
48 49 2.941064 TCGATCTTTACGTCTCGACCAT 59.059 45.455 0.00 0.00 35.41 3.55
49 50 3.376234 TCGATCTTTACGTCTCGACCATT 59.624 43.478 0.00 0.00 35.41 3.16
50 51 4.103357 CGATCTTTACGTCTCGACCATTT 58.897 43.478 0.00 0.00 33.07 2.32
51 52 4.204573 CGATCTTTACGTCTCGACCATTTC 59.795 45.833 0.00 0.00 33.07 2.17
71 72 0.741915 GAGACTCCTCGTCATGTCCC 59.258 60.000 0.00 0.00 45.32 4.46
72 73 0.684805 AGACTCCTCGTCATGTCCCC 60.685 60.000 0.00 0.00 45.32 4.81
73 74 2.005960 GACTCCTCGTCATGTCCCCG 62.006 65.000 0.00 0.00 42.37 5.73
74 75 2.036731 TCCTCGTCATGTCCCCGT 59.963 61.111 0.00 0.00 0.00 5.28
75 76 1.605058 CTCCTCGTCATGTCCCCGTT 61.605 60.000 0.00 0.00 0.00 4.44
76 77 1.153628 CCTCGTCATGTCCCCGTTC 60.154 63.158 0.00 0.00 0.00 3.95
77 78 1.605058 CCTCGTCATGTCCCCGTTCT 61.605 60.000 0.00 0.00 0.00 3.01
78 79 0.179134 CTCGTCATGTCCCCGTTCTC 60.179 60.000 0.00 0.00 0.00 2.87
79 80 0.896479 TCGTCATGTCCCCGTTCTCA 60.896 55.000 0.00 0.00 0.00 3.27
80 81 0.175760 CGTCATGTCCCCGTTCTCAT 59.824 55.000 0.00 0.00 0.00 2.90
81 82 1.802880 CGTCATGTCCCCGTTCTCATC 60.803 57.143 0.00 0.00 0.00 2.92
82 83 0.830648 TCATGTCCCCGTTCTCATCC 59.169 55.000 0.00 0.00 0.00 3.51
83 84 0.530650 CATGTCCCCGTTCTCATCCG 60.531 60.000 0.00 0.00 0.00 4.18
84 85 1.686325 ATGTCCCCGTTCTCATCCGG 61.686 60.000 0.00 0.00 43.82 5.14
88 89 3.617368 CCGTTCTCATCCGGGACT 58.383 61.111 0.00 0.00 40.54 3.85
89 90 1.437986 CCGTTCTCATCCGGGACTC 59.562 63.158 0.00 0.00 40.54 3.36
90 91 1.437986 CGTTCTCATCCGGGACTCC 59.562 63.158 0.00 0.00 0.00 3.85
101 102 3.534721 GGGACTCCGAACTCCTTTG 57.465 57.895 0.00 0.00 0.00 2.77
102 103 0.036294 GGGACTCCGAACTCCTTTGG 60.036 60.000 0.00 0.00 32.46 3.28
103 104 0.685660 GGACTCCGAACTCCTTTGGT 59.314 55.000 0.00 0.00 32.98 3.67
104 105 1.897802 GGACTCCGAACTCCTTTGGTA 59.102 52.381 0.00 0.00 32.98 3.25
105 106 2.353505 GGACTCCGAACTCCTTTGGTAC 60.354 54.545 0.00 0.00 32.98 3.34
106 107 2.298163 GACTCCGAACTCCTTTGGTACA 59.702 50.000 0.00 0.00 32.98 2.90
107 108 2.904434 ACTCCGAACTCCTTTGGTACAT 59.096 45.455 0.00 0.00 39.30 2.29
108 109 3.056035 ACTCCGAACTCCTTTGGTACATC 60.056 47.826 0.00 0.00 39.30 3.06
109 110 2.901192 TCCGAACTCCTTTGGTACATCA 59.099 45.455 0.00 0.00 39.30 3.07
110 111 3.325425 TCCGAACTCCTTTGGTACATCAA 59.675 43.478 0.00 0.00 39.30 2.57
111 112 4.069304 CCGAACTCCTTTGGTACATCAAA 58.931 43.478 0.00 0.00 39.30 2.69
112 113 4.517453 CCGAACTCCTTTGGTACATCAAAA 59.483 41.667 0.00 0.00 39.30 2.44
113 114 5.449304 CGAACTCCTTTGGTACATCAAAAC 58.551 41.667 0.00 0.00 39.30 2.43
114 115 5.238650 CGAACTCCTTTGGTACATCAAAACT 59.761 40.000 0.00 0.00 39.30 2.66
115 116 6.565999 CGAACTCCTTTGGTACATCAAAACTC 60.566 42.308 0.00 0.00 39.30 3.01
116 117 5.690865 ACTCCTTTGGTACATCAAAACTCA 58.309 37.500 0.00 0.00 39.30 3.41
117 118 6.306987 ACTCCTTTGGTACATCAAAACTCAT 58.693 36.000 0.00 0.00 39.30 2.90
118 119 7.458397 ACTCCTTTGGTACATCAAAACTCATA 58.542 34.615 0.00 0.00 39.30 2.15
119 120 7.942341 ACTCCTTTGGTACATCAAAACTCATAA 59.058 33.333 0.00 0.00 39.30 1.90
120 121 8.698973 TCCTTTGGTACATCAAAACTCATAAA 57.301 30.769 0.00 0.00 39.30 1.40
121 122 8.573035 TCCTTTGGTACATCAAAACTCATAAAC 58.427 33.333 0.00 0.00 39.30 2.01
122 123 8.576442 CCTTTGGTACATCAAAACTCATAAACT 58.424 33.333 0.00 0.00 39.30 2.66
123 124 9.612620 CTTTGGTACATCAAAACTCATAAACTC 57.387 33.333 0.00 0.00 39.30 3.01
124 125 8.684386 TTGGTACATCAAAACTCATAAACTCA 57.316 30.769 0.00 0.00 39.30 3.41
125 126 8.862325 TGGTACATCAAAACTCATAAACTCAT 57.138 30.769 0.00 0.00 0.00 2.90
126 127 9.952030 TGGTACATCAAAACTCATAAACTCATA 57.048 29.630 0.00 0.00 0.00 2.15
153 154 4.749245 ACTGTCATTGAAACCTTAAGCG 57.251 40.909 0.00 0.00 0.00 4.68
154 155 4.134563 ACTGTCATTGAAACCTTAAGCGT 58.865 39.130 0.00 0.00 0.00 5.07
155 156 4.024048 ACTGTCATTGAAACCTTAAGCGTG 60.024 41.667 0.00 0.00 0.00 5.34
156 157 3.234386 GTCATTGAAACCTTAAGCGTGC 58.766 45.455 0.00 0.00 0.00 5.34
157 158 2.095969 TCATTGAAACCTTAAGCGTGCG 60.096 45.455 0.00 0.00 0.00 5.34
158 159 0.589223 TTGAAACCTTAAGCGTGCGG 59.411 50.000 0.00 0.00 0.00 5.69
159 160 0.249953 TGAAACCTTAAGCGTGCGGA 60.250 50.000 0.00 0.00 0.00 5.54
160 161 0.165295 GAAACCTTAAGCGTGCGGAC 59.835 55.000 0.00 0.00 0.00 4.79
161 162 1.232621 AAACCTTAAGCGTGCGGACC 61.233 55.000 0.00 0.00 0.00 4.46
162 163 2.818274 CCTTAAGCGTGCGGACCC 60.818 66.667 0.00 0.00 0.00 4.46
163 164 2.264794 CTTAAGCGTGCGGACCCT 59.735 61.111 0.00 0.00 0.00 4.34
164 165 1.514087 CTTAAGCGTGCGGACCCTA 59.486 57.895 0.00 0.00 0.00 3.53
165 166 0.804933 CTTAAGCGTGCGGACCCTAC 60.805 60.000 0.00 0.00 0.00 3.18
166 167 2.546645 TTAAGCGTGCGGACCCTACG 62.547 60.000 0.00 10.04 40.52 3.51
178 179 2.269978 CCCTACGGGTTCGAGAACA 58.730 57.895 16.56 0.00 42.85 3.18
179 180 0.604578 CCCTACGGGTTCGAGAACAA 59.395 55.000 16.56 0.26 42.85 2.83
180 181 1.206371 CCCTACGGGTTCGAGAACAAT 59.794 52.381 16.56 5.06 42.85 2.71
181 182 2.268298 CCTACGGGTTCGAGAACAATG 58.732 52.381 16.56 8.53 42.85 2.82
182 183 2.353406 CCTACGGGTTCGAGAACAATGT 60.353 50.000 16.56 13.00 42.85 2.71
183 184 3.119388 CCTACGGGTTCGAGAACAATGTA 60.119 47.826 16.56 13.35 42.85 2.29
184 185 3.604875 ACGGGTTCGAGAACAATGTAT 57.395 42.857 16.56 0.00 42.85 2.29
185 186 4.724074 ACGGGTTCGAGAACAATGTATA 57.276 40.909 16.56 0.00 42.85 1.47
186 187 4.427312 ACGGGTTCGAGAACAATGTATAC 58.573 43.478 16.56 0.00 42.85 1.47
187 188 4.082081 ACGGGTTCGAGAACAATGTATACA 60.082 41.667 16.56 8.27 42.85 2.29
188 189 5.047847 CGGGTTCGAGAACAATGTATACAT 58.952 41.667 12.75 12.75 42.85 2.29
189 190 5.051039 CGGGTTCGAGAACAATGTATACATG 60.051 44.000 18.94 14.50 42.85 3.21
190 191 6.046593 GGGTTCGAGAACAATGTATACATGA 58.953 40.000 18.94 7.33 42.85 3.07
191 192 6.018994 GGGTTCGAGAACAATGTATACATGAC 60.019 42.308 18.94 10.46 42.85 3.06
192 193 6.018994 GGTTCGAGAACAATGTATACATGACC 60.019 42.308 18.94 11.26 42.85 4.02
193 194 5.278604 TCGAGAACAATGTATACATGACCG 58.721 41.667 18.94 15.10 36.56 4.79
194 195 5.066764 TCGAGAACAATGTATACATGACCGA 59.933 40.000 18.94 16.77 36.56 4.69
195 196 5.399596 CGAGAACAATGTATACATGACCGAG 59.600 44.000 18.94 7.83 36.56 4.63
196 197 6.465439 AGAACAATGTATACATGACCGAGA 57.535 37.500 18.94 0.00 36.56 4.04
197 198 6.273825 AGAACAATGTATACATGACCGAGAC 58.726 40.000 18.94 6.19 36.56 3.36
198 199 5.592104 ACAATGTATACATGACCGAGACA 57.408 39.130 18.94 0.00 36.56 3.41
199 200 5.348986 ACAATGTATACATGACCGAGACAC 58.651 41.667 18.94 0.00 36.56 3.67
200 201 3.685836 TGTATACATGACCGAGACACG 57.314 47.619 0.08 0.00 42.18 4.49
201 202 3.011818 TGTATACATGACCGAGACACGT 58.988 45.455 0.08 0.00 40.78 4.49
202 203 2.846039 ATACATGACCGAGACACGTC 57.154 50.000 0.00 0.00 40.78 4.34
203 204 1.817357 TACATGACCGAGACACGTCT 58.183 50.000 0.00 0.00 43.78 4.18
204 205 8.157694 ATGTATACATGACCGAGACACGTCTC 62.158 46.154 17.60 15.78 42.51 3.36
211 212 4.169271 AGACACGTCTCCGGTCAA 57.831 55.556 0.00 0.00 37.00 3.18
212 213 2.654802 AGACACGTCTCCGGTCAAT 58.345 52.632 0.00 0.00 37.00 2.57
213 214 1.830279 AGACACGTCTCCGGTCAATA 58.170 50.000 0.00 0.00 37.00 1.90
214 215 2.165167 AGACACGTCTCCGGTCAATAA 58.835 47.619 0.00 0.00 37.00 1.40
215 216 2.094854 AGACACGTCTCCGGTCAATAAC 60.095 50.000 0.00 0.00 37.00 1.89
216 217 1.067354 ACACGTCTCCGGTCAATAACC 60.067 52.381 0.00 0.00 45.45 2.85
228 229 4.547406 GTCAATAACCAATAGCGGAACC 57.453 45.455 0.00 0.00 0.00 3.62
229 230 4.196971 GTCAATAACCAATAGCGGAACCT 58.803 43.478 0.00 0.00 0.00 3.50
230 231 4.035208 GTCAATAACCAATAGCGGAACCTG 59.965 45.833 0.00 0.00 0.00 4.00
231 232 2.702592 TAACCAATAGCGGAACCTGG 57.297 50.000 0.00 0.00 0.00 4.45
232 233 0.988832 AACCAATAGCGGAACCTGGA 59.011 50.000 0.00 0.00 0.00 3.86
233 234 1.213296 ACCAATAGCGGAACCTGGAT 58.787 50.000 0.00 0.00 0.00 3.41
234 235 1.134098 ACCAATAGCGGAACCTGGATG 60.134 52.381 0.00 0.00 0.00 3.51
235 236 0.947244 CAATAGCGGAACCTGGATGC 59.053 55.000 0.00 0.00 0.00 3.91
236 237 0.839946 AATAGCGGAACCTGGATGCT 59.160 50.000 0.00 6.34 39.59 3.79
237 238 0.394565 ATAGCGGAACCTGGATGCTC 59.605 55.000 0.00 0.00 37.12 4.26
238 239 0.975556 TAGCGGAACCTGGATGCTCA 60.976 55.000 0.00 0.00 37.12 4.26
239 240 2.109126 GCGGAACCTGGATGCTCAC 61.109 63.158 0.00 0.00 0.00 3.51
240 241 1.296392 CGGAACCTGGATGCTCACA 59.704 57.895 0.00 0.00 0.00 3.58
241 242 0.107508 CGGAACCTGGATGCTCACAT 60.108 55.000 0.00 0.00 39.98 3.21
242 243 1.679944 CGGAACCTGGATGCTCACATT 60.680 52.381 0.00 0.00 36.35 2.71
243 244 1.747355 GGAACCTGGATGCTCACATTG 59.253 52.381 0.00 0.00 36.35 2.82
244 245 1.747355 GAACCTGGATGCTCACATTGG 59.253 52.381 0.00 0.00 36.35 3.16
245 246 0.682209 ACCTGGATGCTCACATTGGC 60.682 55.000 0.00 0.00 36.35 4.52
246 247 0.395311 CCTGGATGCTCACATTGGCT 60.395 55.000 0.00 0.00 36.35 4.75
247 248 1.022735 CTGGATGCTCACATTGGCTC 58.977 55.000 0.00 0.00 36.35 4.70
248 249 0.394762 TGGATGCTCACATTGGCTCC 60.395 55.000 0.00 0.00 36.35 4.70
249 250 1.105759 GGATGCTCACATTGGCTCCC 61.106 60.000 0.00 0.00 36.35 4.30
250 251 0.394762 GATGCTCACATTGGCTCCCA 60.395 55.000 0.00 0.00 36.35 4.37
251 252 0.682209 ATGCTCACATTGGCTCCCAC 60.682 55.000 0.00 0.00 30.07 4.61
252 253 1.303561 GCTCACATTGGCTCCCACA 60.304 57.895 0.00 0.00 30.78 4.17
253 254 0.682209 GCTCACATTGGCTCCCACAT 60.682 55.000 0.00 0.00 30.78 3.21
254 255 1.408683 GCTCACATTGGCTCCCACATA 60.409 52.381 0.00 0.00 30.78 2.29
255 256 2.750807 GCTCACATTGGCTCCCACATAT 60.751 50.000 0.00 0.00 30.78 1.78
256 257 3.559069 CTCACATTGGCTCCCACATATT 58.441 45.455 0.00 0.00 30.78 1.28
257 258 3.554934 TCACATTGGCTCCCACATATTC 58.445 45.455 0.00 0.00 30.78 1.75
258 259 3.202818 TCACATTGGCTCCCACATATTCT 59.797 43.478 0.00 0.00 30.78 2.40
259 260 4.411869 TCACATTGGCTCCCACATATTCTA 59.588 41.667 0.00 0.00 30.78 2.10
260 261 5.073554 TCACATTGGCTCCCACATATTCTAT 59.926 40.000 0.00 0.00 30.78 1.98
261 262 5.182570 CACATTGGCTCCCACATATTCTATG 59.817 44.000 0.00 0.00 30.78 2.23
262 263 5.073554 ACATTGGCTCCCACATATTCTATGA 59.926 40.000 1.33 0.00 30.78 2.15
263 264 5.645056 TTGGCTCCCACATATTCTATGAA 57.355 39.130 1.33 0.00 30.78 2.57
264 265 5.233083 TGGCTCCCACATATTCTATGAAG 57.767 43.478 1.33 0.00 0.00 3.02
265 266 4.907269 TGGCTCCCACATATTCTATGAAGA 59.093 41.667 1.33 0.00 0.00 2.87
266 267 5.549228 TGGCTCCCACATATTCTATGAAGAT 59.451 40.000 1.33 0.00 0.00 2.40
267 268 6.112058 GGCTCCCACATATTCTATGAAGATC 58.888 44.000 1.33 0.00 0.00 2.75
268 269 6.070309 GGCTCCCACATATTCTATGAAGATCT 60.070 42.308 0.00 0.00 0.00 2.75
269 270 7.393216 GCTCCCACATATTCTATGAAGATCTT 58.607 38.462 7.95 7.95 0.00 2.40
270 271 7.882271 GCTCCCACATATTCTATGAAGATCTTT 59.118 37.037 9.87 0.00 0.00 2.52
280 281 8.465273 TTCTATGAAGATCTTTATCGGTCAGA 57.535 34.615 15.42 10.02 35.68 3.27
281 282 7.877003 TCTATGAAGATCTTTATCGGTCAGAC 58.123 38.462 15.42 0.00 35.68 3.51
282 283 5.263968 TGAAGATCTTTATCGGTCAGACC 57.736 43.478 9.87 9.92 37.19 3.85
293 294 1.803334 GGTCAGACCGCATAACAACA 58.197 50.000 3.05 0.00 0.00 3.33
294 295 2.356135 GGTCAGACCGCATAACAACAT 58.644 47.619 3.05 0.00 0.00 2.71
295 296 3.527533 GGTCAGACCGCATAACAACATA 58.472 45.455 3.05 0.00 0.00 2.29
296 297 3.308866 GGTCAGACCGCATAACAACATAC 59.691 47.826 3.05 0.00 0.00 2.39
297 298 3.000078 GTCAGACCGCATAACAACATACG 60.000 47.826 0.00 0.00 0.00 3.06
298 299 2.927477 CAGACCGCATAACAACATACGT 59.073 45.455 0.00 0.00 0.00 3.57
299 300 3.369756 CAGACCGCATAACAACATACGTT 59.630 43.478 0.00 0.00 35.01 3.99
310 311 4.561735 CAACATACGTTGTTCCCTTTGT 57.438 40.909 11.51 0.00 45.55 2.83
311 312 4.533222 CAACATACGTTGTTCCCTTTGTC 58.467 43.478 11.51 0.00 45.55 3.18
312 313 3.811083 ACATACGTTGTTCCCTTTGTCA 58.189 40.909 0.00 0.00 33.74 3.58
313 314 4.394729 ACATACGTTGTTCCCTTTGTCAT 58.605 39.130 0.00 0.00 33.74 3.06
314 315 4.454504 ACATACGTTGTTCCCTTTGTCATC 59.545 41.667 0.00 0.00 33.74 2.92
315 316 1.871039 ACGTTGTTCCCTTTGTCATCG 59.129 47.619 0.00 0.00 0.00 3.84
316 317 1.196808 CGTTGTTCCCTTTGTCATCGG 59.803 52.381 0.00 0.00 0.00 4.18
317 318 2.227194 GTTGTTCCCTTTGTCATCGGT 58.773 47.619 0.00 0.00 0.00 4.69
318 319 3.404899 GTTGTTCCCTTTGTCATCGGTA 58.595 45.455 0.00 0.00 0.00 4.02
319 320 3.992943 TGTTCCCTTTGTCATCGGTAT 57.007 42.857 0.00 0.00 0.00 2.73
320 321 3.605634 TGTTCCCTTTGTCATCGGTATG 58.394 45.455 0.00 0.00 0.00 2.39
321 322 3.008594 TGTTCCCTTTGTCATCGGTATGT 59.991 43.478 0.00 0.00 34.50 2.29
322 323 3.992943 TCCCTTTGTCATCGGTATGTT 57.007 42.857 0.00 0.00 34.50 2.71
323 324 5.180271 GTTCCCTTTGTCATCGGTATGTTA 58.820 41.667 0.00 0.00 34.50 2.41
324 325 4.761975 TCCCTTTGTCATCGGTATGTTAC 58.238 43.478 0.00 0.00 34.50 2.50
325 326 4.468510 TCCCTTTGTCATCGGTATGTTACT 59.531 41.667 0.00 0.00 34.50 2.24
326 327 5.046159 TCCCTTTGTCATCGGTATGTTACTT 60.046 40.000 0.00 0.00 34.50 2.24
327 328 5.064707 CCCTTTGTCATCGGTATGTTACTTG 59.935 44.000 0.00 0.00 34.50 3.16
328 329 5.447279 CCTTTGTCATCGGTATGTTACTTGC 60.447 44.000 0.00 0.00 34.50 4.01
329 330 3.527533 TGTCATCGGTATGTTACTTGCC 58.472 45.455 0.00 0.00 34.50 4.52
330 331 2.870411 GTCATCGGTATGTTACTTGCCC 59.130 50.000 0.30 0.00 34.50 5.36
331 332 1.864711 CATCGGTATGTTACTTGCCCG 59.135 52.381 0.30 0.00 36.83 6.13
332 333 1.184431 TCGGTATGTTACTTGCCCGA 58.816 50.000 8.84 8.84 41.73 5.14
333 334 1.135527 TCGGTATGTTACTTGCCCGAG 59.864 52.381 8.84 0.00 39.36 4.63
334 335 1.135527 CGGTATGTTACTTGCCCGAGA 59.864 52.381 0.00 0.00 37.66 4.04
335 336 2.223971 CGGTATGTTACTTGCCCGAGAT 60.224 50.000 0.00 0.00 37.66 2.75
336 337 3.740141 CGGTATGTTACTTGCCCGAGATT 60.740 47.826 0.00 0.00 37.66 2.40
337 338 3.808174 GGTATGTTACTTGCCCGAGATTC 59.192 47.826 0.00 0.00 0.00 2.52
338 339 2.004583 TGTTACTTGCCCGAGATTCG 57.995 50.000 0.00 0.00 40.07 3.34
339 340 1.546923 TGTTACTTGCCCGAGATTCGA 59.453 47.619 0.00 0.00 43.74 3.71
340 341 2.167693 TGTTACTTGCCCGAGATTCGAT 59.832 45.455 0.00 0.00 43.74 3.59
341 342 2.795175 TACTTGCCCGAGATTCGATC 57.205 50.000 0.00 0.00 43.74 3.69
342 343 0.249073 ACTTGCCCGAGATTCGATCG 60.249 55.000 9.36 9.36 43.74 3.69
343 344 0.249073 CTTGCCCGAGATTCGATCGT 60.249 55.000 15.94 0.00 43.74 3.73
344 345 0.248907 TTGCCCGAGATTCGATCGTC 60.249 55.000 15.94 6.30 43.74 4.20
345 346 1.726322 GCCCGAGATTCGATCGTCG 60.726 63.158 15.94 16.14 43.74 5.12
346 347 1.082038 CCCGAGATTCGATCGTCGG 60.082 63.158 28.32 28.32 43.74 4.79
347 348 1.647629 CCGAGATTCGATCGTCGGT 59.352 57.895 27.43 9.08 43.74 4.69
348 349 0.863799 CCGAGATTCGATCGTCGGTA 59.136 55.000 27.43 3.24 43.74 4.02
349 350 1.463831 CCGAGATTCGATCGTCGGTAT 59.536 52.381 27.43 11.31 43.74 2.73
350 351 2.474196 CCGAGATTCGATCGTCGGTATC 60.474 54.545 27.43 17.34 43.74 2.24
351 352 2.412429 CGAGATTCGATCGTCGGTATCT 59.588 50.000 15.94 14.92 43.74 1.98
352 353 3.482274 CGAGATTCGATCGTCGGTATCTC 60.482 52.174 15.94 23.38 44.78 2.75
353 354 3.400255 AGATTCGATCGTCGGTATCTCA 58.600 45.455 15.94 0.00 40.88 3.27
354 355 3.813724 AGATTCGATCGTCGGTATCTCAA 59.186 43.478 15.94 0.00 40.88 3.02
355 356 4.456222 AGATTCGATCGTCGGTATCTCAAT 59.544 41.667 15.94 3.01 40.88 2.57
356 357 5.642491 AGATTCGATCGTCGGTATCTCAATA 59.358 40.000 15.94 0.00 40.88 1.90
357 358 4.658713 TCGATCGTCGGTATCTCAATAC 57.341 45.455 15.94 0.00 40.88 1.89
371 372 8.958175 GTATCTCAATACCTAGTTCAATCTCG 57.042 38.462 0.00 0.00 33.03 4.04
372 373 7.589958 ATCTCAATACCTAGTTCAATCTCGT 57.410 36.000 0.00 0.00 0.00 4.18
373 374 7.406031 TCTCAATACCTAGTTCAATCTCGTT 57.594 36.000 0.00 0.00 0.00 3.85
374 375 8.515695 TCTCAATACCTAGTTCAATCTCGTTA 57.484 34.615 0.00 0.00 0.00 3.18
375 376 8.404000 TCTCAATACCTAGTTCAATCTCGTTAC 58.596 37.037 0.00 0.00 0.00 2.50
376 377 7.486647 TCAATACCTAGTTCAATCTCGTTACC 58.513 38.462 0.00 0.00 0.00 2.85
377 378 4.367386 ACCTAGTTCAATCTCGTTACCG 57.633 45.455 0.00 0.00 0.00 4.02
378 379 3.129988 ACCTAGTTCAATCTCGTTACCGG 59.870 47.826 0.00 0.00 33.95 5.28
379 380 2.005971 AGTTCAATCTCGTTACCGGC 57.994 50.000 0.00 0.00 33.95 6.13
380 381 1.274167 AGTTCAATCTCGTTACCGGCA 59.726 47.619 0.00 0.00 33.95 5.69
381 382 2.070783 GTTCAATCTCGTTACCGGCAA 58.929 47.619 0.00 0.00 33.95 4.52
382 383 2.004583 TCAATCTCGTTACCGGCAAG 57.995 50.000 0.00 0.00 33.95 4.01
383 384 1.274167 TCAATCTCGTTACCGGCAAGT 59.726 47.619 0.00 0.00 33.95 3.16
384 385 1.659098 CAATCTCGTTACCGGCAAGTC 59.341 52.381 0.00 0.00 33.95 3.01
385 386 1.183549 ATCTCGTTACCGGCAAGTCT 58.816 50.000 0.00 0.00 33.95 3.24
386 387 0.524862 TCTCGTTACCGGCAAGTCTC 59.475 55.000 0.00 0.00 33.95 3.36
387 388 0.526662 CTCGTTACCGGCAAGTCTCT 59.473 55.000 0.00 0.00 33.95 3.10
388 389 0.963962 TCGTTACCGGCAAGTCTCTT 59.036 50.000 0.00 0.00 33.95 2.85
389 390 1.342174 TCGTTACCGGCAAGTCTCTTT 59.658 47.619 0.00 0.00 33.95 2.52
390 391 2.557924 TCGTTACCGGCAAGTCTCTTTA 59.442 45.455 0.00 0.00 33.95 1.85
391 392 2.665052 CGTTACCGGCAAGTCTCTTTAC 59.335 50.000 0.00 0.00 0.00 2.01
392 393 3.613432 CGTTACCGGCAAGTCTCTTTACT 60.613 47.826 0.00 0.00 0.00 2.24
393 394 2.745515 ACCGGCAAGTCTCTTTACTC 57.254 50.000 0.00 0.00 0.00 2.59
394 395 1.067776 ACCGGCAAGTCTCTTTACTCG 60.068 52.381 0.00 0.00 0.00 4.18
395 396 1.067776 CCGGCAAGTCTCTTTACTCGT 60.068 52.381 0.00 0.00 0.00 4.18
396 397 2.609737 CCGGCAAGTCTCTTTACTCGTT 60.610 50.000 0.00 0.00 0.00 3.85
397 398 2.662156 CGGCAAGTCTCTTTACTCGTTC 59.338 50.000 0.00 0.00 0.00 3.95
398 399 3.612004 CGGCAAGTCTCTTTACTCGTTCT 60.612 47.826 0.00 0.00 0.00 3.01
399 400 3.675698 GGCAAGTCTCTTTACTCGTTCTG 59.324 47.826 0.00 0.00 0.00 3.02
400 401 4.299978 GCAAGTCTCTTTACTCGTTCTGT 58.700 43.478 0.00 0.00 0.00 3.41
401 402 5.458891 GCAAGTCTCTTTACTCGTTCTGTA 58.541 41.667 0.00 0.00 0.00 2.74
402 403 5.919141 GCAAGTCTCTTTACTCGTTCTGTAA 59.081 40.000 0.00 0.00 0.00 2.41
403 404 6.586844 GCAAGTCTCTTTACTCGTTCTGTAAT 59.413 38.462 0.00 0.00 31.13 1.89
404 405 7.754027 GCAAGTCTCTTTACTCGTTCTGTAATA 59.246 37.037 0.00 0.00 31.13 0.98
405 406 9.063739 CAAGTCTCTTTACTCGTTCTGTAATAC 57.936 37.037 0.00 0.00 31.13 1.89
406 407 8.332996 AGTCTCTTTACTCGTTCTGTAATACA 57.667 34.615 0.00 0.00 31.13 2.29
407 408 8.958506 AGTCTCTTTACTCGTTCTGTAATACAT 58.041 33.333 0.00 0.00 31.13 2.29
408 409 9.224058 GTCTCTTTACTCGTTCTGTAATACATC 57.776 37.037 0.00 0.00 31.13 3.06
409 410 8.953313 TCTCTTTACTCGTTCTGTAATACATCA 58.047 33.333 0.00 0.00 31.13 3.07
410 411 9.737427 CTCTTTACTCGTTCTGTAATACATCAT 57.263 33.333 0.00 0.00 31.13 2.45
411 412 9.731819 TCTTTACTCGTTCTGTAATACATCATC 57.268 33.333 0.00 0.00 31.13 2.92
412 413 9.737427 CTTTACTCGTTCTGTAATACATCATCT 57.263 33.333 0.00 0.00 31.13 2.90
413 414 9.731819 TTTACTCGTTCTGTAATACATCATCTC 57.268 33.333 0.00 0.00 31.13 2.75
414 415 6.431278 ACTCGTTCTGTAATACATCATCTCG 58.569 40.000 0.00 0.00 0.00 4.04
415 416 5.212934 TCGTTCTGTAATACATCATCTCGC 58.787 41.667 0.00 0.00 0.00 5.03
416 417 4.976116 CGTTCTGTAATACATCATCTCGCA 59.024 41.667 0.00 0.00 0.00 5.10
417 418 5.458779 CGTTCTGTAATACATCATCTCGCAA 59.541 40.000 0.00 0.00 0.00 4.85
418 419 6.560433 CGTTCTGTAATACATCATCTCGCAAC 60.560 42.308 0.00 0.00 0.00 4.17
419 420 6.149129 TCTGTAATACATCATCTCGCAACT 57.851 37.500 0.00 0.00 0.00 3.16
420 421 7.272037 TCTGTAATACATCATCTCGCAACTA 57.728 36.000 0.00 0.00 0.00 2.24
421 422 7.712797 TCTGTAATACATCATCTCGCAACTAA 58.287 34.615 0.00 0.00 0.00 2.24
422 423 7.648112 TCTGTAATACATCATCTCGCAACTAAC 59.352 37.037 0.00 0.00 0.00 2.34
423 424 7.489160 TGTAATACATCATCTCGCAACTAACT 58.511 34.615 0.00 0.00 0.00 2.24
424 425 7.648112 TGTAATACATCATCTCGCAACTAACTC 59.352 37.037 0.00 0.00 0.00 3.01
448 449 1.063717 AGGGTAGTGCAATCAATGGGG 60.064 52.381 0.00 0.00 0.00 4.96
536 537 5.186215 TCCACGAACATTCTATAAGGTGTCA 59.814 40.000 0.00 0.00 28.28 3.58
596 611 6.463331 GGCCCATGAACACATATTTTCATCAT 60.463 38.462 0.00 0.00 39.86 2.45
692 734 4.901849 TCCTTCACTCCTGGTATCCATTAG 59.098 45.833 0.00 0.00 30.82 1.73
723 765 5.507482 CGTGTTCTTCTTCTCCAGTTGTCTA 60.507 44.000 0.00 0.00 0.00 2.59
787 829 5.936686 ATGACATCTCATTGCCTTATTCG 57.063 39.130 0.00 0.00 32.79 3.34
843 885 1.109920 ATGTGGATCCGAGACTCCCG 61.110 60.000 7.39 0.00 0.00 5.14
859 902 3.064207 CTCCCGTGAAGAAAAATCGACA 58.936 45.455 0.00 0.00 0.00 4.35
1030 1075 1.683790 GAACGATGAGACGCCGTTGG 61.684 60.000 0.00 0.00 45.04 3.77
1077 1149 0.505655 AGTCGCGTCGCAAAAAGTAC 59.494 50.000 18.75 3.31 0.00 2.73
1199 1275 9.179909 TCAATCGTTATGGTATGTGGTTTATTT 57.820 29.630 0.00 0.00 0.00 1.40
1351 1468 7.604927 TCCAGGTATATCAACTTGTTGTACAAC 59.395 37.037 28.13 28.13 41.50 3.32
1463 1581 7.759489 TCTAGCAAATCCAGTAAAACAATGT 57.241 32.000 0.00 0.00 0.00 2.71
1466 1584 7.054491 AGCAAATCCAGTAAAACAATGTCTT 57.946 32.000 0.00 0.00 0.00 3.01
1478 1596 7.639113 AAAACAATGTCTTGGTTCAGTTCTA 57.361 32.000 0.00 0.00 41.44 2.10
1479 1597 6.619801 AACAATGTCTTGGTTCAGTTCTAC 57.380 37.500 0.00 0.00 36.64 2.59
1484 1603 6.677781 TGTCTTGGTTCAGTTCTACAAAAG 57.322 37.500 0.00 0.00 0.00 2.27
1485 1604 6.411376 TGTCTTGGTTCAGTTCTACAAAAGA 58.589 36.000 0.00 0.00 0.00 2.52
1544 1663 8.635765 AATCATCATCATCAACATCATCATCA 57.364 30.769 0.00 0.00 0.00 3.07
1545 1664 8.814038 ATCATCATCATCAACATCATCATCAT 57.186 30.769 0.00 0.00 0.00 2.45
1546 1665 8.268850 TCATCATCATCAACATCATCATCATC 57.731 34.615 0.00 0.00 0.00 2.92
1547 1666 7.882791 TCATCATCATCAACATCATCATCATCA 59.117 33.333 0.00 0.00 0.00 3.07
1548 1667 8.680903 CATCATCATCAACATCATCATCATCAT 58.319 33.333 0.00 0.00 0.00 2.45
1549 1668 8.268850 TCATCATCAACATCATCATCATCATC 57.731 34.615 0.00 0.00 0.00 2.92
1550 1669 7.882791 TCATCATCAACATCATCATCATCATCA 59.117 33.333 0.00 0.00 0.00 3.07
1551 1670 8.680903 CATCATCAACATCATCATCATCATCAT 58.319 33.333 0.00 0.00 0.00 2.45
1552 1671 8.268850 TCATCAACATCATCATCATCATCATC 57.731 34.615 0.00 0.00 0.00 2.92
1553 1672 7.882791 TCATCAACATCATCATCATCATCATCA 59.117 33.333 0.00 0.00 0.00 3.07
1554 1673 8.680903 CATCAACATCATCATCATCATCATCAT 58.319 33.333 0.00 0.00 0.00 2.45
1555 1674 8.268850 TCAACATCATCATCATCATCATCATC 57.731 34.615 0.00 0.00 0.00 2.92
1556 1675 7.882791 TCAACATCATCATCATCATCATCATCA 59.117 33.333 0.00 0.00 0.00 3.07
1557 1676 8.680903 CAACATCATCATCATCATCATCATCAT 58.319 33.333 0.00 0.00 0.00 2.45
1558 1677 8.443953 ACATCATCATCATCATCATCATCATC 57.556 34.615 0.00 0.00 0.00 2.92
1559 1678 8.049117 ACATCATCATCATCATCATCATCATCA 58.951 33.333 0.00 0.00 0.00 3.07
1560 1679 9.064706 CATCATCATCATCATCATCATCATCAT 57.935 33.333 0.00 0.00 0.00 2.45
1561 1680 8.668510 TCATCATCATCATCATCATCATCATC 57.331 34.615 0.00 0.00 0.00 2.92
1562 1681 8.267183 TCATCATCATCATCATCATCATCATCA 58.733 33.333 0.00 0.00 0.00 3.07
1563 1682 9.064706 CATCATCATCATCATCATCATCATCAT 57.935 33.333 0.00 0.00 0.00 2.45
1564 1683 8.668510 TCATCATCATCATCATCATCATCATC 57.331 34.615 0.00 0.00 0.00 2.92
1565 1684 8.267183 TCATCATCATCATCATCATCATCATCA 58.733 33.333 0.00 0.00 0.00 3.07
1566 1685 9.064706 CATCATCATCATCATCATCATCATCAT 57.935 33.333 0.00 0.00 0.00 2.45
1567 1686 8.668510 TCATCATCATCATCATCATCATCATC 57.331 34.615 0.00 0.00 0.00 2.92
1568 1687 8.267183 TCATCATCATCATCATCATCATCATCA 58.733 33.333 0.00 0.00 0.00 3.07
1569 1688 9.064706 CATCATCATCATCATCATCATCATCAT 57.935 33.333 0.00 0.00 0.00 2.45
1570 1689 8.668510 TCATCATCATCATCATCATCATCATC 57.331 34.615 0.00 0.00 0.00 2.92
1571 1690 8.267183 TCATCATCATCATCATCATCATCATCA 58.733 33.333 0.00 0.00 0.00 3.07
1574 1693 8.267183 TCATCATCATCATCATCATCATCATCA 58.733 33.333 0.00 0.00 0.00 3.07
1641 1767 1.282157 AGCCCCATCTCAGTTACCAAC 59.718 52.381 0.00 0.00 0.00 3.77
1664 1794 6.900194 ACTCCAGTTGTAACCAGCATATATT 58.100 36.000 0.00 0.00 0.00 1.28
1828 1966 2.427095 AGGTGCCCGATTAATTGCTTTC 59.573 45.455 0.00 0.00 0.00 2.62
1940 2124 2.338984 GACAACGCCTGAGGTCGT 59.661 61.111 13.71 13.71 37.13 4.34
2063 2247 0.105401 GAGAGGAAGGGTAGGGGGAG 60.105 65.000 0.00 0.00 0.00 4.30
2071 2255 2.654204 GGTAGGGGGAGGGGGAAGA 61.654 68.421 0.00 0.00 0.00 2.87
2098 2291 4.214327 CGGCGGAGGAGGAGAAGC 62.214 72.222 0.00 0.00 0.00 3.86
2358 2551 3.577313 GCCCGCTCGATCTTTGCC 61.577 66.667 0.00 0.00 0.00 4.52
2402 2595 6.119536 TGTTCTTAATTGTGAGTGGTTGAGT 58.880 36.000 0.00 0.00 0.00 3.41
2530 2723 1.153823 AAATCTCACCGTCGAGGCG 60.154 57.895 0.00 0.00 46.52 5.52
2607 2800 3.305813 GGTTCGGAAAATTTGGACCTTCC 60.306 47.826 0.00 0.00 36.96 3.46
2958 3152 5.725362 AGTTGTACTTTATCTGAGGCTGAC 58.275 41.667 0.00 0.00 0.00 3.51
3362 3735 7.243487 TGTCAAATACTTTAGTACGTCTACCG 58.757 38.462 0.00 0.00 44.03 4.02
3375 3749 2.803956 CGTCTACCGTGGTGAAAACATT 59.196 45.455 0.72 0.00 0.00 2.71
3422 3890 2.614057 GAGGTAGTCATGAAATTGGGCG 59.386 50.000 0.00 0.00 0.00 6.13
3430 3898 9.162764 GTAGTCATGAAATTGGGCGTATATATT 57.837 33.333 0.00 0.00 0.00 1.28
3795 4272 9.396022 ACCTCCTAGTGACATTGTTTTATATTG 57.604 33.333 0.00 0.00 0.00 1.90
3849 4326 2.267045 GTGGCCAAAAGCTACCCTG 58.733 57.895 7.24 0.00 46.71 4.45
3984 4475 4.141892 CCAAATCATGGGCTAGCAAAATCA 60.142 41.667 18.24 6.72 46.27 2.57
4071 4585 3.812053 CCAGCTACTGGCATTATTGAGTC 59.188 47.826 0.00 0.00 45.13 3.36
4378 4979 4.881920 ACCTTCCATCAAAATTTCCAACG 58.118 39.130 0.00 0.00 0.00 4.10
4505 5112 0.687354 AGCTCATGACTTCCGTGGTT 59.313 50.000 0.00 0.00 32.64 3.67
4962 6164 1.878102 CGGCCATACTATGTGCCTTCC 60.878 57.143 18.75 2.85 41.51 3.46
5027 7278 1.625818 CTTCAGAAGTACCCTGTGCCT 59.374 52.381 1.48 0.00 33.57 4.75
5265 7521 3.876274 ACGAACTCATCTACATGCACT 57.124 42.857 0.00 0.00 0.00 4.40
5442 7702 3.205519 TCCCAATTTCTCCTCCTCTGA 57.794 47.619 0.00 0.00 0.00 3.27
5518 7781 2.024176 TTTCCAGGCTGAGTAGTCCA 57.976 50.000 17.94 0.00 0.00 4.02
5619 7888 4.153673 TCCAGTAGTACCTCTCTAGCAC 57.846 50.000 0.00 0.00 0.00 4.40
5709 7980 6.119536 TCTTCTTTCAAGTCTGCTTTTGGTA 58.880 36.000 0.00 0.00 31.49 3.25
5714 7985 4.469657 TCAAGTCTGCTTTTGGTATTGGT 58.530 39.130 0.00 0.00 31.49 3.67
5727 7998 5.261209 TGGTATTGGTGCATAAGAATTGC 57.739 39.130 0.00 0.00 40.55 3.56
5895 8167 1.458639 GCCAGCCAGTTTGAGCTTGT 61.459 55.000 0.00 0.00 37.18 3.16
5897 8169 0.595095 CAGCCAGTTTGAGCTTGTCC 59.405 55.000 0.00 0.00 37.18 4.02
5913 8185 1.841277 TGTCCTGGGTAGTTGTTGTGT 59.159 47.619 0.00 0.00 0.00 3.72
5939 8217 5.708697 GCTTACTTAGTGGGTTGTACCAATT 59.291 40.000 0.00 0.00 43.34 2.32
5941 8219 7.148356 GCTTACTTAGTGGGTTGTACCAATTAC 60.148 40.741 0.00 0.00 43.34 1.89
5954 8238 7.549147 TGTACCAATTACTTAGTCCAGAAGT 57.451 36.000 0.00 0.00 40.27 3.01
6022 8306 2.355756 CGATGATTTGCCGGATGTTTCT 59.644 45.455 5.05 0.00 0.00 2.52
6032 8316 5.004448 TGCCGGATGTTTCTGTTTATTACA 58.996 37.500 5.05 0.00 34.95 2.41
6099 8398 3.725895 CGTTCGCATTCTCATTGAGTTGG 60.726 47.826 13.23 5.44 0.00 3.77
6101 8400 1.530441 CGCATTCTCATTGAGTTGGCG 60.530 52.381 23.02 23.02 37.15 5.69
6102 8401 1.739466 GCATTCTCATTGAGTTGGCGA 59.261 47.619 13.23 0.00 0.00 5.54
6103 8402 2.476854 GCATTCTCATTGAGTTGGCGAC 60.477 50.000 13.23 0.00 0.00 5.19
6104 8403 1.808411 TTCTCATTGAGTTGGCGACC 58.192 50.000 13.23 0.00 0.00 4.79
6105 8404 0.976641 TCTCATTGAGTTGGCGACCT 59.023 50.000 13.23 0.00 0.00 3.85
6106 8405 1.081892 CTCATTGAGTTGGCGACCTG 58.918 55.000 5.46 0.00 0.00 4.00
6107 8406 0.955428 TCATTGAGTTGGCGACCTGC 60.955 55.000 0.00 0.00 45.38 4.85
6118 8417 1.244019 GCGACCTGCCTGAATTTGGT 61.244 55.000 0.00 0.00 37.76 3.67
6119 8418 0.523072 CGACCTGCCTGAATTTGGTG 59.477 55.000 0.00 0.00 0.00 4.17
6121 8420 1.187567 ACCTGCCTGAATTTGGTGGC 61.188 55.000 0.00 0.00 45.10 5.01
6122 8421 1.593265 CTGCCTGAATTTGGTGGCC 59.407 57.895 0.00 0.00 44.32 5.36
6134 8433 1.363246 TGGTGGCCTAACACATACCA 58.637 50.000 3.32 3.30 43.08 3.25
6135 8434 1.280710 TGGTGGCCTAACACATACCAG 59.719 52.381 3.32 0.00 43.08 4.00
6138 8437 3.270877 GTGGCCTAACACATACCAGAAG 58.729 50.000 3.32 0.00 40.99 2.85
6166 8465 3.699538 ACTTTGTTGGGTGAAGAAGAACC 59.300 43.478 0.00 0.00 35.59 3.62
6169 8468 2.143925 GTTGGGTGAAGAAGAACCTCG 58.856 52.381 0.00 0.00 36.64 4.63
6182 8481 4.657436 AGAACCTCGTCATAATCCTGAC 57.343 45.455 0.00 0.00 41.73 3.51
6207 8506 3.963129 TGAATGGCCTAAATTTCTCCGT 58.037 40.909 3.32 0.00 0.00 4.69
6208 8507 3.694072 TGAATGGCCTAAATTTCTCCGTG 59.306 43.478 3.32 0.00 0.00 4.94
6209 8508 2.122783 TGGCCTAAATTTCTCCGTGG 57.877 50.000 3.32 0.00 0.00 4.94
6210 8509 0.738975 GGCCTAAATTTCTCCGTGGC 59.261 55.000 0.00 0.00 38.28 5.01
6225 8524 4.025401 GGCGGTGCCGTCTTTGTG 62.025 66.667 12.46 0.00 39.62 3.33
6226 8525 4.025401 GCGGTGCCGTCTTTGTGG 62.025 66.667 12.46 0.00 42.09 4.17
6232 8532 2.617274 GCCGTCTTTGTGGTCTGGC 61.617 63.158 0.00 0.00 0.00 4.85
6245 8545 0.818040 GTCTGGCCTGTTTGGAACGT 60.818 55.000 3.32 0.00 38.35 3.99
6250 8550 0.307760 GCCTGTTTGGAACGTGTGAG 59.692 55.000 0.00 0.00 38.35 3.51
6260 8560 2.546789 GGAACGTGTGAGTTTTACAGGG 59.453 50.000 0.00 0.00 38.02 4.45
6261 8561 2.249844 ACGTGTGAGTTTTACAGGGG 57.750 50.000 0.00 0.00 38.02 4.79
6282 8708 2.932187 GCTCTGCCGAAATTTGCCATTT 60.932 45.455 0.00 0.00 0.00 2.32
6317 8743 5.066893 CGTGGGAGATTCATTCATTCATGTT 59.933 40.000 0.00 0.00 0.00 2.71
6389 8838 4.697756 TTCGTGGCTGGGCGAAGG 62.698 66.667 0.00 0.00 41.36 3.46
6409 8860 6.371595 AAGGCAAAGAGGAGGATATGATAG 57.628 41.667 0.00 0.00 0.00 2.08
6521 8984 8.255111 ACCAAGTCACATGATATCTCTGAATA 57.745 34.615 0.00 0.00 0.00 1.75
6523 8986 9.551734 CCAAGTCACATGATATCTCTGAATAAA 57.448 33.333 0.00 0.00 0.00 1.40
6563 9026 8.865978 ACGGTTTTTCTGAATAAAAAGTTGAAC 58.134 29.630 0.00 0.00 38.60 3.18
6564 9027 8.325282 CGGTTTTTCTGAATAAAAAGTTGAACC 58.675 33.333 0.00 0.00 38.60 3.62
6586 9049 2.240510 AGGAACTTGGCTTGTGGGA 58.759 52.632 0.00 0.00 27.25 4.37
6638 9108 2.158813 TCTCACGCTGGTTTCTTTCCTT 60.159 45.455 0.00 0.00 0.00 3.36
6639 9109 2.218603 TCACGCTGGTTTCTTTCCTTC 58.781 47.619 0.00 0.00 0.00 3.46
6641 9111 0.881796 CGCTGGTTTCTTTCCTTCCC 59.118 55.000 0.00 0.00 0.00 3.97
6642 9112 1.817740 CGCTGGTTTCTTTCCTTCCCA 60.818 52.381 0.00 0.00 0.00 4.37
6643 9113 1.613925 GCTGGTTTCTTTCCTTCCCAC 59.386 52.381 0.00 0.00 0.00 4.61
6644 9114 2.239400 CTGGTTTCTTTCCTTCCCACC 58.761 52.381 0.00 0.00 0.00 4.61
6649 9119 4.080807 GGTTTCTTTCCTTCCCACCAAAAA 60.081 41.667 0.00 0.00 0.00 1.94
6662 9132 3.488489 CACCAAAAACGATCCGATTGAC 58.512 45.455 2.37 0.00 0.00 3.18
6684 9154 0.111253 AAGGAAACAGCACCCTCCAG 59.889 55.000 0.00 0.00 0.00 3.86
6769 9239 0.531532 CCGATTCTCGCTGCCAAGAT 60.532 55.000 0.00 0.00 38.82 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.761235 TGGACGACTATATTCGGACATC 57.239 45.455 15.80 5.17 43.58 3.06
1 2 5.723672 ATTGGACGACTATATTCGGACAT 57.276 39.130 15.80 1.42 43.58 3.06
2 3 6.829229 ATATTGGACGACTATATTCGGACA 57.171 37.500 15.80 11.11 43.58 4.02
3 4 7.797587 CGATATATTGGACGACTATATTCGGAC 59.202 40.741 15.80 8.96 43.58 4.79
4 5 7.712205 TCGATATATTGGACGACTATATTCGGA 59.288 37.037 15.80 1.21 43.58 4.55
5 6 7.858583 TCGATATATTGGACGACTATATTCGG 58.141 38.462 15.80 0.12 43.58 4.30
6 7 9.531412 GATCGATATATTGGACGACTATATTCG 57.469 37.037 10.61 10.61 44.87 3.34
12 13 8.385858 CGTAAAGATCGATATATTGGACGACTA 58.614 37.037 0.00 0.00 37.58 2.59
13 14 7.094890 ACGTAAAGATCGATATATTGGACGACT 60.095 37.037 20.28 2.21 37.58 4.18
14 15 7.020010 ACGTAAAGATCGATATATTGGACGAC 58.980 38.462 20.28 0.00 37.58 4.34
15 16 7.118825 AGACGTAAAGATCGATATATTGGACGA 59.881 37.037 20.28 0.00 33.77 4.20
16 17 7.242079 AGACGTAAAGATCGATATATTGGACG 58.758 38.462 0.00 9.96 34.82 4.79
17 18 7.425882 CGAGACGTAAAGATCGATATATTGGAC 59.574 40.741 0.00 0.00 35.65 4.02
18 19 7.332678 TCGAGACGTAAAGATCGATATATTGGA 59.667 37.037 0.00 0.00 36.96 3.53
19 20 7.425882 GTCGAGACGTAAAGATCGATATATTGG 59.574 40.741 0.00 0.00 41.06 3.16
20 21 7.425882 GGTCGAGACGTAAAGATCGATATATTG 59.574 40.741 0.00 0.00 41.06 1.90
21 22 7.118825 TGGTCGAGACGTAAAGATCGATATATT 59.881 37.037 0.00 0.00 41.06 1.28
22 23 6.592994 TGGTCGAGACGTAAAGATCGATATAT 59.407 38.462 0.00 0.00 41.06 0.86
23 24 5.928264 TGGTCGAGACGTAAAGATCGATATA 59.072 40.000 0.00 0.00 41.06 0.86
24 25 4.753610 TGGTCGAGACGTAAAGATCGATAT 59.246 41.667 0.00 0.00 41.06 1.63
25 26 4.122046 TGGTCGAGACGTAAAGATCGATA 58.878 43.478 0.00 3.83 41.06 2.92
26 27 2.941064 TGGTCGAGACGTAAAGATCGAT 59.059 45.455 0.00 0.00 41.06 3.59
27 28 2.349590 TGGTCGAGACGTAAAGATCGA 58.650 47.619 0.00 0.00 38.51 3.59
28 29 2.819422 TGGTCGAGACGTAAAGATCG 57.181 50.000 0.00 0.00 35.21 3.69
29 30 5.623174 GAAATGGTCGAGACGTAAAGATC 57.377 43.478 0.00 0.00 0.00 2.75
55 56 2.052690 CGGGGACATGACGAGGAGT 61.053 63.158 0.00 0.00 0.00 3.85
56 57 1.605058 AACGGGGACATGACGAGGAG 61.605 60.000 0.00 0.00 0.00 3.69
57 58 1.601419 GAACGGGGACATGACGAGGA 61.601 60.000 0.00 0.00 0.00 3.71
58 59 1.153628 GAACGGGGACATGACGAGG 60.154 63.158 0.00 0.00 0.00 4.63
59 60 0.179134 GAGAACGGGGACATGACGAG 60.179 60.000 0.00 0.00 0.00 4.18
60 61 0.896479 TGAGAACGGGGACATGACGA 60.896 55.000 0.00 0.00 0.00 4.20
61 62 0.175760 ATGAGAACGGGGACATGACG 59.824 55.000 0.00 0.77 0.00 4.35
62 63 1.473434 GGATGAGAACGGGGACATGAC 60.473 57.143 0.00 0.00 0.00 3.06
63 64 0.830648 GGATGAGAACGGGGACATGA 59.169 55.000 0.00 0.00 0.00 3.07
64 65 0.530650 CGGATGAGAACGGGGACATG 60.531 60.000 0.00 0.00 0.00 3.21
65 66 1.686325 CCGGATGAGAACGGGGACAT 61.686 60.000 0.00 0.00 46.08 3.06
66 67 2.355986 CCGGATGAGAACGGGGACA 61.356 63.158 0.00 0.00 46.08 4.02
67 68 2.499685 CCGGATGAGAACGGGGAC 59.500 66.667 0.00 0.00 46.08 4.46
72 73 1.437986 GGAGTCCCGGATGAGAACG 59.562 63.158 0.73 0.00 0.00 3.95
83 84 0.036294 CCAAAGGAGTTCGGAGTCCC 60.036 60.000 14.43 0.00 45.11 4.46
84 85 0.685660 ACCAAAGGAGTTCGGAGTCC 59.314 55.000 9.87 9.87 44.46 3.85
85 86 2.298163 TGTACCAAAGGAGTTCGGAGTC 59.702 50.000 0.00 0.00 0.00 3.36
86 87 2.322658 TGTACCAAAGGAGTTCGGAGT 58.677 47.619 0.00 0.00 0.00 3.85
87 88 3.056107 TGATGTACCAAAGGAGTTCGGAG 60.056 47.826 0.00 0.00 0.00 4.63
88 89 2.901192 TGATGTACCAAAGGAGTTCGGA 59.099 45.455 0.00 0.00 0.00 4.55
89 90 3.328382 TGATGTACCAAAGGAGTTCGG 57.672 47.619 0.00 0.00 0.00 4.30
90 91 5.238650 AGTTTTGATGTACCAAAGGAGTTCG 59.761 40.000 0.00 0.00 37.34 3.95
91 92 6.262273 TGAGTTTTGATGTACCAAAGGAGTTC 59.738 38.462 0.00 0.00 37.34 3.01
92 93 6.126409 TGAGTTTTGATGTACCAAAGGAGTT 58.874 36.000 0.00 0.00 37.34 3.01
93 94 5.690865 TGAGTTTTGATGTACCAAAGGAGT 58.309 37.500 0.00 0.00 37.34 3.85
94 95 6.824305 ATGAGTTTTGATGTACCAAAGGAG 57.176 37.500 0.00 0.00 37.34 3.69
95 96 8.573035 GTTTATGAGTTTTGATGTACCAAAGGA 58.427 33.333 0.00 0.00 37.34 3.36
96 97 8.576442 AGTTTATGAGTTTTGATGTACCAAAGG 58.424 33.333 0.00 0.00 37.34 3.11
97 98 9.612620 GAGTTTATGAGTTTTGATGTACCAAAG 57.387 33.333 0.00 0.00 37.34 2.77
98 99 9.126151 TGAGTTTATGAGTTTTGATGTACCAAA 57.874 29.630 0.00 0.00 34.56 3.28
99 100 8.684386 TGAGTTTATGAGTTTTGATGTACCAA 57.316 30.769 0.00 0.00 0.00 3.67
100 101 8.862325 ATGAGTTTATGAGTTTTGATGTACCA 57.138 30.769 0.00 0.00 0.00 3.25
127 128 8.612619 CGCTTAAGGTTTCAATGACAGTTATAT 58.387 33.333 4.29 0.00 0.00 0.86
128 129 7.604927 ACGCTTAAGGTTTCAATGACAGTTATA 59.395 33.333 4.29 0.00 0.00 0.98
129 130 6.430000 ACGCTTAAGGTTTCAATGACAGTTAT 59.570 34.615 4.29 0.00 0.00 1.89
130 131 5.761234 ACGCTTAAGGTTTCAATGACAGTTA 59.239 36.000 4.29 0.00 0.00 2.24
131 132 4.578928 ACGCTTAAGGTTTCAATGACAGTT 59.421 37.500 4.29 0.00 0.00 3.16
132 133 4.024048 CACGCTTAAGGTTTCAATGACAGT 60.024 41.667 4.29 0.00 0.00 3.55
133 134 4.466828 CACGCTTAAGGTTTCAATGACAG 58.533 43.478 4.29 0.00 0.00 3.51
134 135 3.304391 GCACGCTTAAGGTTTCAATGACA 60.304 43.478 4.29 0.00 0.00 3.58
135 136 3.234386 GCACGCTTAAGGTTTCAATGAC 58.766 45.455 4.29 0.00 0.00 3.06
136 137 2.095969 CGCACGCTTAAGGTTTCAATGA 60.096 45.455 4.29 0.00 0.00 2.57
137 138 2.241722 CGCACGCTTAAGGTTTCAATG 58.758 47.619 4.29 0.00 0.00 2.82
138 139 1.199097 CCGCACGCTTAAGGTTTCAAT 59.801 47.619 4.29 0.00 0.00 2.57
139 140 0.589223 CCGCACGCTTAAGGTTTCAA 59.411 50.000 4.29 0.00 0.00 2.69
140 141 0.249953 TCCGCACGCTTAAGGTTTCA 60.250 50.000 4.29 0.00 0.00 2.69
141 142 0.165295 GTCCGCACGCTTAAGGTTTC 59.835 55.000 4.29 0.00 0.00 2.78
142 143 1.232621 GGTCCGCACGCTTAAGGTTT 61.233 55.000 4.29 0.00 0.00 3.27
143 144 1.670083 GGTCCGCACGCTTAAGGTT 60.670 57.895 4.29 0.00 0.00 3.50
144 145 2.047560 GGTCCGCACGCTTAAGGT 60.048 61.111 4.29 0.00 0.00 3.50
145 146 1.952102 TAGGGTCCGCACGCTTAAGG 61.952 60.000 0.00 0.00 43.11 2.69
146 147 0.804933 GTAGGGTCCGCACGCTTAAG 60.805 60.000 0.00 0.00 43.11 1.85
147 148 1.216178 GTAGGGTCCGCACGCTTAA 59.784 57.895 0.00 0.00 43.11 1.85
148 149 2.887360 GTAGGGTCCGCACGCTTA 59.113 61.111 0.00 0.00 43.11 3.09
149 150 4.430765 CGTAGGGTCCGCACGCTT 62.431 66.667 0.00 0.00 43.11 4.68
162 163 2.955614 ACATTGTTCTCGAACCCGTAG 58.044 47.619 7.28 0.00 40.46 3.51
163 164 4.724074 ATACATTGTTCTCGAACCCGTA 57.276 40.909 7.28 6.47 40.46 4.02
164 165 3.604875 ATACATTGTTCTCGAACCCGT 57.395 42.857 7.28 4.71 40.46 5.28
165 166 4.426416 TGTATACATTGTTCTCGAACCCG 58.574 43.478 0.08 0.00 40.46 5.28
166 167 6.018994 GTCATGTATACATTGTTCTCGAACCC 60.019 42.308 15.85 0.00 36.07 4.11
167 168 6.018994 GGTCATGTATACATTGTTCTCGAACC 60.019 42.308 15.85 9.08 36.07 3.62
168 169 6.291637 CGGTCATGTATACATTGTTCTCGAAC 60.292 42.308 15.85 9.80 36.82 3.95
169 170 5.746721 CGGTCATGTATACATTGTTCTCGAA 59.253 40.000 15.85 0.00 33.61 3.71
170 171 5.066764 TCGGTCATGTATACATTGTTCTCGA 59.933 40.000 15.85 14.74 33.61 4.04
171 172 5.278604 TCGGTCATGTATACATTGTTCTCG 58.721 41.667 15.85 13.00 33.61 4.04
172 173 6.418226 GTCTCGGTCATGTATACATTGTTCTC 59.582 42.308 15.85 3.57 33.61 2.87
173 174 6.127451 TGTCTCGGTCATGTATACATTGTTCT 60.127 38.462 15.85 0.00 33.61 3.01
174 175 6.019801 GTGTCTCGGTCATGTATACATTGTTC 60.020 42.308 15.85 6.69 33.61 3.18
175 176 5.810587 GTGTCTCGGTCATGTATACATTGTT 59.189 40.000 15.85 0.00 33.61 2.83
176 177 5.348986 GTGTCTCGGTCATGTATACATTGT 58.651 41.667 15.85 0.00 33.61 2.71
177 178 4.441087 CGTGTCTCGGTCATGTATACATTG 59.559 45.833 15.85 11.35 33.20 2.82
178 179 4.097437 ACGTGTCTCGGTCATGTATACATT 59.903 41.667 15.85 0.00 44.69 2.71
179 180 3.630769 ACGTGTCTCGGTCATGTATACAT 59.369 43.478 12.75 12.75 44.69 2.29
180 181 3.011818 ACGTGTCTCGGTCATGTATACA 58.988 45.455 8.27 8.27 44.69 2.29
181 182 3.311871 AGACGTGTCTCGGTCATGTATAC 59.688 47.826 0.00 0.00 44.69 1.47
182 183 3.538591 AGACGTGTCTCGGTCATGTATA 58.461 45.455 0.00 0.00 44.69 1.47
183 184 2.355132 GAGACGTGTCTCGGTCATGTAT 59.645 50.000 13.75 0.00 45.49 2.29
184 185 1.736126 GAGACGTGTCTCGGTCATGTA 59.264 52.381 13.75 0.00 45.49 2.29
185 186 0.522180 GAGACGTGTCTCGGTCATGT 59.478 55.000 13.75 0.00 45.49 3.21
186 187 3.314339 GAGACGTGTCTCGGTCATG 57.686 57.895 13.75 0.00 45.49 3.07
207 208 4.035208 CAGGTTCCGCTATTGGTTATTGAC 59.965 45.833 0.00 0.00 0.00 3.18
208 209 4.196193 CAGGTTCCGCTATTGGTTATTGA 58.804 43.478 0.00 0.00 0.00 2.57
209 210 3.315191 CCAGGTTCCGCTATTGGTTATTG 59.685 47.826 0.00 0.00 0.00 1.90
210 211 3.201266 TCCAGGTTCCGCTATTGGTTATT 59.799 43.478 0.00 0.00 0.00 1.40
211 212 2.775384 TCCAGGTTCCGCTATTGGTTAT 59.225 45.455 0.00 0.00 0.00 1.89
212 213 2.189676 TCCAGGTTCCGCTATTGGTTA 58.810 47.619 0.00 0.00 0.00 2.85
213 214 0.988832 TCCAGGTTCCGCTATTGGTT 59.011 50.000 0.00 0.00 0.00 3.67
214 215 1.134098 CATCCAGGTTCCGCTATTGGT 60.134 52.381 0.00 0.00 0.00 3.67
215 216 1.597742 CATCCAGGTTCCGCTATTGG 58.402 55.000 0.00 0.00 0.00 3.16
216 217 0.947244 GCATCCAGGTTCCGCTATTG 59.053 55.000 0.00 0.00 0.00 1.90
217 218 0.839946 AGCATCCAGGTTCCGCTATT 59.160 50.000 0.00 0.00 0.00 1.73
218 219 0.394565 GAGCATCCAGGTTCCGCTAT 59.605 55.000 0.00 0.00 31.86 2.97
219 220 0.975556 TGAGCATCCAGGTTCCGCTA 60.976 55.000 0.00 0.00 31.86 4.26
220 221 2.293318 TGAGCATCCAGGTTCCGCT 61.293 57.895 0.00 0.00 35.14 5.52
221 222 2.109126 GTGAGCATCCAGGTTCCGC 61.109 63.158 0.00 0.00 0.00 5.54
222 223 0.107508 ATGTGAGCATCCAGGTTCCG 60.108 55.000 0.00 0.00 0.00 4.30
223 224 1.747355 CAATGTGAGCATCCAGGTTCC 59.253 52.381 0.00 0.00 33.50 3.62
224 225 1.747355 CCAATGTGAGCATCCAGGTTC 59.253 52.381 0.00 0.00 33.50 3.62
225 226 1.843368 CCAATGTGAGCATCCAGGTT 58.157 50.000 0.00 0.00 33.50 3.50
226 227 0.682209 GCCAATGTGAGCATCCAGGT 60.682 55.000 0.00 0.00 33.50 4.00
227 228 0.395311 AGCCAATGTGAGCATCCAGG 60.395 55.000 0.00 0.00 33.50 4.45
228 229 1.022735 GAGCCAATGTGAGCATCCAG 58.977 55.000 0.00 0.00 33.50 3.86
229 230 0.394762 GGAGCCAATGTGAGCATCCA 60.395 55.000 0.00 0.00 33.50 3.41
230 231 1.105759 GGGAGCCAATGTGAGCATCC 61.106 60.000 0.00 0.00 33.50 3.51
231 232 0.394762 TGGGAGCCAATGTGAGCATC 60.395 55.000 0.00 0.00 33.50 3.91
232 233 0.682209 GTGGGAGCCAATGTGAGCAT 60.682 55.000 0.00 0.00 34.18 3.79
233 234 1.303561 GTGGGAGCCAATGTGAGCA 60.304 57.895 0.00 0.00 34.18 4.26
234 235 0.682209 ATGTGGGAGCCAATGTGAGC 60.682 55.000 0.00 0.00 34.18 4.26
235 236 2.715749 TATGTGGGAGCCAATGTGAG 57.284 50.000 0.00 0.00 34.18 3.51
236 237 3.202818 AGAATATGTGGGAGCCAATGTGA 59.797 43.478 0.00 0.00 34.18 3.58
237 238 3.559069 AGAATATGTGGGAGCCAATGTG 58.441 45.455 0.00 0.00 34.18 3.21
238 239 3.959495 AGAATATGTGGGAGCCAATGT 57.041 42.857 0.00 0.00 34.18 2.71
239 240 5.563592 TCATAGAATATGTGGGAGCCAATG 58.436 41.667 0.00 0.00 34.18 2.82
240 241 5.848286 TCATAGAATATGTGGGAGCCAAT 57.152 39.130 0.00 0.00 34.18 3.16
241 242 5.369404 TCTTCATAGAATATGTGGGAGCCAA 59.631 40.000 0.00 0.00 34.18 4.52
242 243 4.907269 TCTTCATAGAATATGTGGGAGCCA 59.093 41.667 0.00 0.00 0.00 4.75
243 244 5.489792 TCTTCATAGAATATGTGGGAGCC 57.510 43.478 0.00 0.00 0.00 4.70
244 245 6.945218 AGATCTTCATAGAATATGTGGGAGC 58.055 40.000 0.00 0.00 33.20 4.70
254 255 9.083422 TCTGACCGATAAAGATCTTCATAGAAT 57.917 33.333 8.78 0.00 33.20 2.40
255 256 8.353684 GTCTGACCGATAAAGATCTTCATAGAA 58.646 37.037 8.78 0.00 33.20 2.10
256 257 7.040340 GGTCTGACCGATAAAGATCTTCATAGA 60.040 40.741 11.71 0.00 34.21 1.98
257 258 7.087639 GGTCTGACCGATAAAGATCTTCATAG 58.912 42.308 11.71 0.00 0.00 2.23
258 259 6.982852 GGTCTGACCGATAAAGATCTTCATA 58.017 40.000 11.71 0.00 0.00 2.15
259 260 5.848406 GGTCTGACCGATAAAGATCTTCAT 58.152 41.667 11.71 0.00 0.00 2.57
260 261 5.263968 GGTCTGACCGATAAAGATCTTCA 57.736 43.478 11.71 0.00 0.00 3.02
274 275 1.803334 TGTTGTTATGCGGTCTGACC 58.197 50.000 16.99 16.99 34.05 4.02
275 276 3.000078 CGTATGTTGTTATGCGGTCTGAC 60.000 47.826 0.00 0.00 33.41 3.51
276 277 3.183754 CGTATGTTGTTATGCGGTCTGA 58.816 45.455 0.00 0.00 33.41 3.27
277 278 2.927477 ACGTATGTTGTTATGCGGTCTG 59.073 45.455 0.00 0.00 39.90 3.51
278 279 3.241067 ACGTATGTTGTTATGCGGTCT 57.759 42.857 0.00 0.00 39.90 3.85
291 292 3.811083 TGACAAAGGGAACAACGTATGT 58.189 40.909 0.00 0.00 46.82 2.29
292 293 4.435518 CGATGACAAAGGGAACAACGTATG 60.436 45.833 0.00 0.00 0.00 2.39
293 294 3.682858 CGATGACAAAGGGAACAACGTAT 59.317 43.478 0.00 0.00 0.00 3.06
294 295 3.061322 CGATGACAAAGGGAACAACGTA 58.939 45.455 0.00 0.00 0.00 3.57
295 296 1.871039 CGATGACAAAGGGAACAACGT 59.129 47.619 0.00 0.00 0.00 3.99
296 297 1.196808 CCGATGACAAAGGGAACAACG 59.803 52.381 0.00 0.00 0.00 4.10
297 298 2.227194 ACCGATGACAAAGGGAACAAC 58.773 47.619 4.83 0.00 0.00 3.32
298 299 2.649531 ACCGATGACAAAGGGAACAA 57.350 45.000 4.83 0.00 0.00 2.83
299 300 3.008594 ACATACCGATGACAAAGGGAACA 59.991 43.478 4.83 0.00 36.48 3.18
300 301 3.606687 ACATACCGATGACAAAGGGAAC 58.393 45.455 4.83 0.00 36.48 3.62
301 302 3.992943 ACATACCGATGACAAAGGGAA 57.007 42.857 4.83 0.00 36.48 3.97
302 303 3.992943 AACATACCGATGACAAAGGGA 57.007 42.857 4.83 0.00 36.48 4.20
303 304 4.766375 AGTAACATACCGATGACAAAGGG 58.234 43.478 4.83 0.00 36.48 3.95
304 305 5.447279 GCAAGTAACATACCGATGACAAAGG 60.447 44.000 0.00 0.00 36.48 3.11
305 306 5.447279 GGCAAGTAACATACCGATGACAAAG 60.447 44.000 0.00 0.00 36.48 2.77
306 307 4.393680 GGCAAGTAACATACCGATGACAAA 59.606 41.667 0.00 0.00 36.48 2.83
307 308 3.936453 GGCAAGTAACATACCGATGACAA 59.064 43.478 0.00 0.00 36.48 3.18
308 309 3.527533 GGCAAGTAACATACCGATGACA 58.472 45.455 0.00 0.00 36.48 3.58
309 310 2.870411 GGGCAAGTAACATACCGATGAC 59.130 50.000 0.00 0.00 36.48 3.06
310 311 2.482316 CGGGCAAGTAACATACCGATGA 60.482 50.000 0.00 0.00 43.69 2.92
311 312 1.864711 CGGGCAAGTAACATACCGATG 59.135 52.381 0.00 0.00 43.69 3.84
312 313 1.758280 TCGGGCAAGTAACATACCGAT 59.242 47.619 0.00 0.00 44.53 4.18
313 314 1.135527 CTCGGGCAAGTAACATACCGA 59.864 52.381 0.00 0.00 46.85 4.69
314 315 1.135527 TCTCGGGCAAGTAACATACCG 59.864 52.381 0.00 0.00 42.45 4.02
315 316 2.973694 TCTCGGGCAAGTAACATACC 57.026 50.000 0.00 0.00 0.00 2.73
316 317 3.489785 CGAATCTCGGGCAAGTAACATAC 59.510 47.826 0.00 0.00 36.00 2.39
317 318 3.382227 TCGAATCTCGGGCAAGTAACATA 59.618 43.478 0.00 0.00 40.88 2.29
318 319 2.167693 TCGAATCTCGGGCAAGTAACAT 59.832 45.455 0.00 0.00 40.88 2.71
319 320 1.546923 TCGAATCTCGGGCAAGTAACA 59.453 47.619 0.00 0.00 40.88 2.41
320 321 2.288961 TCGAATCTCGGGCAAGTAAC 57.711 50.000 0.00 0.00 40.88 2.50
321 322 2.543031 CGATCGAATCTCGGGCAAGTAA 60.543 50.000 10.26 0.00 40.88 2.24
322 323 1.001706 CGATCGAATCTCGGGCAAGTA 60.002 52.381 10.26 0.00 40.88 2.24
323 324 0.249073 CGATCGAATCTCGGGCAAGT 60.249 55.000 10.26 0.00 40.88 3.16
324 325 0.249073 ACGATCGAATCTCGGGCAAG 60.249 55.000 24.34 0.00 40.88 4.01
325 326 0.248907 GACGATCGAATCTCGGGCAA 60.249 55.000 24.34 0.00 40.88 4.52
326 327 1.359117 GACGATCGAATCTCGGGCA 59.641 57.895 24.34 0.00 40.88 5.36
327 328 1.726322 CGACGATCGAATCTCGGGC 60.726 63.158 24.34 2.72 43.74 6.13
328 329 1.082038 CCGACGATCGAATCTCGGG 60.082 63.158 27.86 14.86 43.74 5.14
329 330 0.863799 TACCGACGATCGAATCTCGG 59.136 55.000 31.43 31.43 46.23 4.63
330 331 2.412429 AGATACCGACGATCGAATCTCG 59.588 50.000 24.34 19.57 43.74 4.04
331 332 3.432592 TGAGATACCGACGATCGAATCTC 59.567 47.826 24.34 24.61 46.85 2.75
332 333 3.400255 TGAGATACCGACGATCGAATCT 58.600 45.455 24.34 18.80 43.74 2.40
333 334 3.808116 TGAGATACCGACGATCGAATC 57.192 47.619 24.34 14.82 43.74 2.52
334 335 4.768130 ATTGAGATACCGACGATCGAAT 57.232 40.909 24.34 0.00 43.74 3.34
335 336 4.083643 GGTATTGAGATACCGACGATCGAA 60.084 45.833 24.34 1.11 46.13 3.71
336 337 3.434641 GGTATTGAGATACCGACGATCGA 59.565 47.826 24.34 0.00 46.13 3.59
337 338 3.744987 GGTATTGAGATACCGACGATCG 58.255 50.000 14.88 14.88 46.13 3.69
346 347 8.569641 ACGAGATTGAACTAGGTATTGAGATAC 58.430 37.037 0.00 0.00 37.90 2.24
347 348 8.693120 ACGAGATTGAACTAGGTATTGAGATA 57.307 34.615 0.00 0.00 0.00 1.98
348 349 7.589958 ACGAGATTGAACTAGGTATTGAGAT 57.410 36.000 0.00 0.00 0.00 2.75
349 350 7.406031 AACGAGATTGAACTAGGTATTGAGA 57.594 36.000 0.00 0.00 0.00 3.27
350 351 7.648510 GGTAACGAGATTGAACTAGGTATTGAG 59.351 40.741 0.00 0.00 0.00 3.02
351 352 7.486647 GGTAACGAGATTGAACTAGGTATTGA 58.513 38.462 0.00 0.00 0.00 2.57
352 353 7.695869 GGTAACGAGATTGAACTAGGTATTG 57.304 40.000 0.00 0.00 0.00 1.90
371 372 3.922910 AGTAAAGAGACTTGCCGGTAAC 58.077 45.455 0.00 0.00 0.00 2.50
372 373 3.366679 CGAGTAAAGAGACTTGCCGGTAA 60.367 47.826 4.46 4.46 0.00 2.85
373 374 2.163010 CGAGTAAAGAGACTTGCCGGTA 59.837 50.000 1.90 0.00 0.00 4.02
374 375 1.067776 CGAGTAAAGAGACTTGCCGGT 60.068 52.381 1.90 0.00 0.00 5.28
375 376 1.067776 ACGAGTAAAGAGACTTGCCGG 60.068 52.381 0.00 0.00 34.59 6.13
376 377 2.349297 ACGAGTAAAGAGACTTGCCG 57.651 50.000 0.00 0.00 34.59 5.69
377 378 3.675698 CAGAACGAGTAAAGAGACTTGCC 59.324 47.826 0.00 0.00 34.59 4.52
378 379 4.299978 ACAGAACGAGTAAAGAGACTTGC 58.700 43.478 0.00 0.00 34.59 4.01
379 380 9.063739 GTATTACAGAACGAGTAAAGAGACTTG 57.936 37.037 0.00 0.00 35.33 3.16
380 381 8.790718 TGTATTACAGAACGAGTAAAGAGACTT 58.209 33.333 0.00 0.00 35.33 3.01
381 382 8.332996 TGTATTACAGAACGAGTAAAGAGACT 57.667 34.615 0.00 0.00 35.33 3.24
382 383 9.224058 GATGTATTACAGAACGAGTAAAGAGAC 57.776 37.037 2.53 0.00 35.33 3.36
383 384 8.953313 TGATGTATTACAGAACGAGTAAAGAGA 58.047 33.333 2.53 0.00 35.33 3.10
384 385 9.737427 ATGATGTATTACAGAACGAGTAAAGAG 57.263 33.333 2.53 0.00 35.33 2.85
385 386 9.731819 GATGATGTATTACAGAACGAGTAAAGA 57.268 33.333 2.53 0.00 35.33 2.52
386 387 9.737427 AGATGATGTATTACAGAACGAGTAAAG 57.263 33.333 2.53 0.00 35.33 1.85
387 388 9.731819 GAGATGATGTATTACAGAACGAGTAAA 57.268 33.333 2.53 0.00 35.33 2.01
388 389 8.068380 CGAGATGATGTATTACAGAACGAGTAA 58.932 37.037 2.53 0.00 36.06 2.24
389 390 7.573627 CGAGATGATGTATTACAGAACGAGTA 58.426 38.462 2.53 0.00 0.00 2.59
390 391 6.431278 CGAGATGATGTATTACAGAACGAGT 58.569 40.000 2.53 0.00 0.00 4.18
391 392 5.340932 GCGAGATGATGTATTACAGAACGAG 59.659 44.000 2.53 0.00 0.00 4.18
392 393 5.212934 GCGAGATGATGTATTACAGAACGA 58.787 41.667 2.53 0.00 0.00 3.85
393 394 4.976116 TGCGAGATGATGTATTACAGAACG 59.024 41.667 2.53 4.17 0.00 3.95
394 395 6.477033 AGTTGCGAGATGATGTATTACAGAAC 59.523 38.462 2.53 0.00 0.00 3.01
395 396 6.573434 AGTTGCGAGATGATGTATTACAGAA 58.427 36.000 2.53 0.00 0.00 3.02
396 397 6.149129 AGTTGCGAGATGATGTATTACAGA 57.851 37.500 2.53 0.00 0.00 3.41
397 398 7.649705 AGTTAGTTGCGAGATGATGTATTACAG 59.350 37.037 2.53 0.00 0.00 2.74
398 399 7.489160 AGTTAGTTGCGAGATGATGTATTACA 58.511 34.615 0.00 0.00 0.00 2.41
399 400 7.648112 TGAGTTAGTTGCGAGATGATGTATTAC 59.352 37.037 0.00 0.00 0.00 1.89
400 401 7.712797 TGAGTTAGTTGCGAGATGATGTATTA 58.287 34.615 0.00 0.00 0.00 0.98
401 402 6.573434 TGAGTTAGTTGCGAGATGATGTATT 58.427 36.000 0.00 0.00 0.00 1.89
402 403 6.149129 TGAGTTAGTTGCGAGATGATGTAT 57.851 37.500 0.00 0.00 0.00 2.29
403 404 5.576447 TGAGTTAGTTGCGAGATGATGTA 57.424 39.130 0.00 0.00 0.00 2.29
404 405 4.456280 TGAGTTAGTTGCGAGATGATGT 57.544 40.909 0.00 0.00 0.00 3.06
405 406 5.980698 AATGAGTTAGTTGCGAGATGATG 57.019 39.130 0.00 0.00 0.00 3.07
406 407 6.219473 CCTAATGAGTTAGTTGCGAGATGAT 58.781 40.000 0.00 0.00 36.40 2.45
407 408 5.451937 CCCTAATGAGTTAGTTGCGAGATGA 60.452 44.000 0.00 0.00 36.40 2.92
408 409 4.747108 CCCTAATGAGTTAGTTGCGAGATG 59.253 45.833 0.00 0.00 36.40 2.90
409 410 4.406003 ACCCTAATGAGTTAGTTGCGAGAT 59.594 41.667 0.00 0.00 36.40 2.75
410 411 3.767673 ACCCTAATGAGTTAGTTGCGAGA 59.232 43.478 0.00 0.00 36.40 4.04
411 412 4.124851 ACCCTAATGAGTTAGTTGCGAG 57.875 45.455 0.00 0.00 36.40 5.03
412 413 4.708421 ACTACCCTAATGAGTTAGTTGCGA 59.292 41.667 0.00 0.00 36.40 5.10
413 414 4.804139 CACTACCCTAATGAGTTAGTTGCG 59.196 45.833 0.00 0.00 36.40 4.85
414 415 4.571176 GCACTACCCTAATGAGTTAGTTGC 59.429 45.833 0.00 0.00 36.40 4.17
415 416 5.730550 TGCACTACCCTAATGAGTTAGTTG 58.269 41.667 0.00 0.00 36.40 3.16
416 417 6.368779 TTGCACTACCCTAATGAGTTAGTT 57.631 37.500 0.00 0.00 36.40 2.24
417 418 6.156256 TGATTGCACTACCCTAATGAGTTAGT 59.844 38.462 0.00 0.00 36.40 2.24
418 419 6.582636 TGATTGCACTACCCTAATGAGTTAG 58.417 40.000 0.00 0.00 37.61 2.34
419 420 6.553953 TGATTGCACTACCCTAATGAGTTA 57.446 37.500 0.00 0.00 0.00 2.24
420 421 5.435686 TGATTGCACTACCCTAATGAGTT 57.564 39.130 0.00 0.00 0.00 3.01
421 422 5.435686 TTGATTGCACTACCCTAATGAGT 57.564 39.130 0.00 0.00 0.00 3.41
422 423 5.240183 CCATTGATTGCACTACCCTAATGAG 59.760 44.000 0.00 0.00 0.00 2.90
423 424 5.132502 CCATTGATTGCACTACCCTAATGA 58.867 41.667 0.00 0.00 0.00 2.57
424 425 4.279169 CCCATTGATTGCACTACCCTAATG 59.721 45.833 0.00 0.00 0.00 1.90
499 500 3.275617 TTCGTGGAATGAACCCATAGG 57.724 47.619 0.00 0.00 36.82 2.57
692 734 2.990514 GAGAAGAAGAACACGAGGAAGC 59.009 50.000 0.00 0.00 0.00 3.86
723 765 4.638304 AGTGTTAAGGTGCGATAACAACT 58.362 39.130 0.40 0.00 42.00 3.16
787 829 6.986231 ACCACAAAGAAAAGATGGTCAAAATC 59.014 34.615 0.00 0.00 39.51 2.17
859 902 3.644966 TTGCCGGATATGGAAGAAAGT 57.355 42.857 5.05 0.00 0.00 2.66
1030 1075 2.764637 ATCTTGCCGTTGGACCCCAC 62.765 60.000 0.00 0.00 30.78 4.61
1041 1086 2.472861 CGACTTATACTGCATCTTGCCG 59.527 50.000 0.00 0.00 44.23 5.69
1052 1097 2.267188 TTTGCGACGCGACTTATACT 57.733 45.000 15.93 0.00 0.00 2.12
1059 1104 0.779561 CGTACTTTTTGCGACGCGAC 60.780 55.000 15.93 5.54 34.82 5.19
1077 1149 5.828299 AACAATATTTCCCATGTACCACG 57.172 39.130 0.00 0.00 0.00 4.94
1305 1392 8.212995 ACCTGGATTTTGATTCAACTTCATTTT 58.787 29.630 0.00 0.00 0.00 1.82
1351 1468 4.940046 AGATCTACCACAATGCAAGAACAG 59.060 41.667 0.00 0.00 0.00 3.16
1451 1569 7.339466 AGAACTGAACCAAGACATTGTTTTACT 59.661 33.333 0.00 0.00 34.39 2.24
1453 1571 7.639113 AGAACTGAACCAAGACATTGTTTTA 57.361 32.000 0.00 0.00 34.39 1.52
1463 1581 7.931578 TTTCTTTTGTAGAACTGAACCAAGA 57.068 32.000 0.00 0.00 42.50 3.02
1518 1637 9.733556 TGATGATGATGTTGATGATGATGATTA 57.266 29.630 0.00 0.00 0.00 1.75
1519 1638 8.635765 TGATGATGATGTTGATGATGATGATT 57.364 30.769 0.00 0.00 0.00 2.57
1520 1639 8.814038 ATGATGATGATGTTGATGATGATGAT 57.186 30.769 0.00 0.00 0.00 2.45
1521 1640 7.882791 TGATGATGATGATGTTGATGATGATGA 59.117 33.333 0.00 0.00 0.00 2.92
1522 1641 8.044060 TGATGATGATGATGTTGATGATGATG 57.956 34.615 0.00 0.00 0.00 3.07
1523 1642 8.814038 ATGATGATGATGATGTTGATGATGAT 57.186 30.769 0.00 0.00 0.00 2.45
1524 1643 7.882791 TGATGATGATGATGATGTTGATGATGA 59.117 33.333 0.00 0.00 0.00 2.92
1525 1644 8.044060 TGATGATGATGATGATGTTGATGATG 57.956 34.615 0.00 0.00 0.00 3.07
1526 1645 8.814038 ATGATGATGATGATGATGTTGATGAT 57.186 30.769 0.00 0.00 0.00 2.45
1527 1646 7.882791 TGATGATGATGATGATGATGTTGATGA 59.117 33.333 0.00 0.00 0.00 2.92
1528 1647 8.044060 TGATGATGATGATGATGATGTTGATG 57.956 34.615 0.00 0.00 0.00 3.07
1529 1648 8.814038 ATGATGATGATGATGATGATGTTGAT 57.186 30.769 0.00 0.00 0.00 2.57
1530 1649 7.882791 TGATGATGATGATGATGATGATGTTGA 59.117 33.333 0.00 0.00 0.00 3.18
1531 1650 8.044060 TGATGATGATGATGATGATGATGTTG 57.956 34.615 0.00 0.00 0.00 3.33
1532 1651 8.814038 ATGATGATGATGATGATGATGATGTT 57.186 30.769 0.00 0.00 0.00 2.71
1533 1652 8.049117 TGATGATGATGATGATGATGATGATGT 58.951 33.333 0.00 0.00 0.00 3.06
1534 1653 8.442632 TGATGATGATGATGATGATGATGATG 57.557 34.615 0.00 0.00 0.00 3.07
1535 1654 9.282569 GATGATGATGATGATGATGATGATGAT 57.717 33.333 0.00 0.00 0.00 2.45
1536 1655 8.267183 TGATGATGATGATGATGATGATGATGA 58.733 33.333 0.00 0.00 0.00 2.92
1537 1656 8.442632 TGATGATGATGATGATGATGATGATG 57.557 34.615 0.00 0.00 0.00 3.07
1538 1657 9.282569 GATGATGATGATGATGATGATGATGAT 57.717 33.333 0.00 0.00 0.00 2.45
1539 1658 8.267183 TGATGATGATGATGATGATGATGATGA 58.733 33.333 0.00 0.00 0.00 2.92
1540 1659 8.442632 TGATGATGATGATGATGATGATGATG 57.557 34.615 0.00 0.00 0.00 3.07
1541 1660 9.282569 GATGATGATGATGATGATGATGATGAT 57.717 33.333 0.00 0.00 0.00 2.45
1542 1661 8.267183 TGATGATGATGATGATGATGATGATGA 58.733 33.333 0.00 0.00 0.00 2.92
1543 1662 8.442632 TGATGATGATGATGATGATGATGATG 57.557 34.615 0.00 0.00 0.00 3.07
1544 1663 9.282569 GATGATGATGATGATGATGATGATGAT 57.717 33.333 0.00 0.00 0.00 2.45
1545 1664 8.267183 TGATGATGATGATGATGATGATGATGA 58.733 33.333 0.00 0.00 0.00 2.92
1546 1665 8.442632 TGATGATGATGATGATGATGATGATG 57.557 34.615 0.00 0.00 0.00 3.07
1547 1666 9.282569 GATGATGATGATGATGATGATGATGAT 57.717 33.333 0.00 0.00 0.00 2.45
1548 1667 8.267183 TGATGATGATGATGATGATGATGATGA 58.733 33.333 0.00 0.00 0.00 2.92
1549 1668 8.442632 TGATGATGATGATGATGATGATGATG 57.557 34.615 0.00 0.00 0.00 3.07
1550 1669 9.638176 AATGATGATGATGATGATGATGATGAT 57.362 29.630 0.00 0.00 0.00 2.45
1597 1716 1.953311 GCCCTCTGCAACGGGATTTAA 60.953 52.381 21.12 0.00 43.44 1.52
1641 1767 9.507329 AATAATATATGCTGGTTACAACTGGAG 57.493 33.333 0.00 0.00 0.00 3.86
2063 2247 3.798511 CCGCCTTCCTCTTCCCCC 61.799 72.222 0.00 0.00 0.00 5.40
2358 2551 6.660949 AGAACATTCCCAAATCTAAAGACAGG 59.339 38.462 0.00 0.00 0.00 4.00
2402 2595 2.610859 GGAACCCCAGCTCTCCCA 60.611 66.667 0.00 0.00 0.00 4.37
2456 2649 2.432119 GGACTCTCGGAATCCCTCC 58.568 63.158 0.00 0.00 41.40 4.30
2530 2723 0.328592 GGAGGTTCCTTCACCCCTTC 59.671 60.000 0.00 0.00 37.58 3.46
2607 2800 0.604578 CAGCACCCTGTTTCCCAATG 59.395 55.000 0.00 0.00 34.31 2.82
2958 3152 3.305267 CCTGAGATAAGATGCAGACCTCG 60.305 52.174 0.00 0.00 0.00 4.63
3113 3307 5.297569 AGAAAGTAGAAAACTCTGGCACT 57.702 39.130 0.00 0.00 37.50 4.40
3114 3308 7.674471 ATAAGAAAGTAGAAAACTCTGGCAC 57.326 36.000 0.00 0.00 37.50 5.01
3115 3309 7.719633 ACAATAAGAAAGTAGAAAACTCTGGCA 59.280 33.333 0.00 0.00 37.50 4.92
3360 3723 4.045783 GGTTGTAAATGTTTTCACCACGG 58.954 43.478 0.00 0.00 0.00 4.94
3362 3735 5.918576 GCTAGGTTGTAAATGTTTTCACCAC 59.081 40.000 0.00 0.00 0.00 4.16
3375 3749 8.417106 CAGAAGAATAGATCTGCTAGGTTGTAA 58.583 37.037 5.18 0.00 42.70 2.41
3456 3924 4.791974 AGAAACTTACTCCACGTTCGTAG 58.208 43.478 0.00 0.00 0.00 3.51
3795 4272 1.968540 GGGCAGTGAAGTGAGTGGC 60.969 63.158 0.00 0.00 40.33 5.01
3876 4354 3.378427 GCCATGATCCTAACAAAGACCAC 59.622 47.826 0.00 0.00 0.00 4.16
3984 4475 7.896383 TTTGGCTAGCTATAATTTTGGTGAT 57.104 32.000 15.72 0.00 0.00 3.06
4387 4988 8.701895 AGAGATACTTAACATACCGGAAATTGA 58.298 33.333 9.46 0.00 0.00 2.57
4446 5047 2.968574 ACGATGCTGAGAGGGTCAATAT 59.031 45.455 0.00 0.00 33.60 1.28
4474 5081 3.979347 AGTCATGAGCTGAAAGGGGATAT 59.021 43.478 0.00 0.00 35.07 1.63
4898 5514 3.877508 GAGCACAACCAGAACTAGTTTGT 59.122 43.478 10.02 6.81 0.00 2.83
5027 7278 9.775854 AATTTGATAAACCAAATGTCACAATCA 57.224 25.926 0.00 0.00 43.61 2.57
5115 7366 7.600375 ACAATACAGAAATATGTCCGCAGATAG 59.400 37.037 0.00 0.00 34.56 2.08
5116 7367 7.441836 ACAATACAGAAATATGTCCGCAGATA 58.558 34.615 0.00 0.00 34.56 1.98
5117 7368 6.291377 ACAATACAGAAATATGTCCGCAGAT 58.709 36.000 0.00 0.00 34.56 2.90
5118 7369 5.670485 ACAATACAGAAATATGTCCGCAGA 58.330 37.500 0.00 0.00 34.56 4.26
5265 7521 8.648698 TTTGAATTTCATCTAACCCTGATCAA 57.351 30.769 0.00 0.00 0.00 2.57
5442 7702 0.609131 GCTAGCACCACCACCACATT 60.609 55.000 10.63 0.00 0.00 2.71
5676 7947 9.561069 AGCAGACTTGAAAGAAGAAAAACTATA 57.439 29.630 0.00 0.00 0.00 1.31
5701 7972 7.201548 GCAATTCTTATGCACCAATACCAAAAG 60.202 37.037 0.00 0.00 43.29 2.27
5727 7998 6.484643 TGGAAGAAAAGAAGAAGAGTGACATG 59.515 38.462 0.00 0.00 0.00 3.21
5728 7999 6.595682 TGGAAGAAAAGAAGAAGAGTGACAT 58.404 36.000 0.00 0.00 0.00 3.06
5806 8077 1.881973 GCAGCTTGATGTTCCACTTCA 59.118 47.619 0.00 0.00 31.50 3.02
5895 8167 2.925724 CAACACAACAACTACCCAGGA 58.074 47.619 0.00 0.00 0.00 3.86
5897 8169 2.297701 AGCAACACAACAACTACCCAG 58.702 47.619 0.00 0.00 0.00 4.45
5913 8185 4.102838 TGGTACAACCCACTAAGTAAGCAA 59.897 41.667 0.00 0.00 37.50 3.91
5954 8238 5.765510 ACATTATAAGCTCATTCACCCCAA 58.234 37.500 0.00 0.00 0.00 4.12
6032 8316 4.415881 TTCGGTACATGATACAGCCAAT 57.584 40.909 0.00 0.00 0.00 3.16
6099 8398 1.244019 ACCAAATTCAGGCAGGTCGC 61.244 55.000 0.00 0.00 41.28 5.19
6101 8400 0.890683 CCACCAAATTCAGGCAGGTC 59.109 55.000 0.00 0.00 0.00 3.85
6102 8401 1.187567 GCCACCAAATTCAGGCAGGT 61.188 55.000 0.00 0.00 46.26 4.00
6103 8402 1.593265 GCCACCAAATTCAGGCAGG 59.407 57.895 0.00 5.47 46.26 4.85
6106 8405 1.204704 GTTAGGCCACCAAATTCAGGC 59.795 52.381 5.01 0.00 46.28 4.85
6107 8406 2.231235 GTGTTAGGCCACCAAATTCAGG 59.769 50.000 5.01 0.00 0.00 3.86
6108 8407 2.890311 TGTGTTAGGCCACCAAATTCAG 59.110 45.455 5.01 0.00 34.35 3.02
6109 8408 2.950781 TGTGTTAGGCCACCAAATTCA 58.049 42.857 5.01 0.00 34.35 2.57
6110 8409 4.142249 GGTATGTGTTAGGCCACCAAATTC 60.142 45.833 5.01 0.00 34.35 2.17
6111 8410 3.767131 GGTATGTGTTAGGCCACCAAATT 59.233 43.478 5.01 0.00 34.35 1.82
6112 8411 3.245443 TGGTATGTGTTAGGCCACCAAAT 60.245 43.478 5.01 1.00 33.28 2.32
6114 8413 1.705745 TGGTATGTGTTAGGCCACCAA 59.294 47.619 5.01 0.00 33.28 3.67
6115 8414 1.280710 CTGGTATGTGTTAGGCCACCA 59.719 52.381 5.01 6.30 34.35 4.17
6116 8415 1.557832 TCTGGTATGTGTTAGGCCACC 59.442 52.381 5.01 0.64 34.35 4.61
6118 8417 2.238646 CCTTCTGGTATGTGTTAGGCCA 59.761 50.000 5.01 0.00 0.00 5.36
6119 8418 2.504175 TCCTTCTGGTATGTGTTAGGCC 59.496 50.000 0.00 0.00 34.23 5.19
6121 8420 5.411669 GTGTTTCCTTCTGGTATGTGTTAGG 59.588 44.000 0.00 0.00 34.23 2.69
6122 8421 6.231211 AGTGTTTCCTTCTGGTATGTGTTAG 58.769 40.000 0.00 0.00 34.23 2.34
6134 8433 3.447229 CACCCAACAAAGTGTTTCCTTCT 59.553 43.478 0.00 0.00 38.77 2.85
6135 8434 3.445805 TCACCCAACAAAGTGTTTCCTTC 59.554 43.478 0.00 0.00 38.77 3.46
6138 8437 3.445805 TCTTCACCCAACAAAGTGTTTCC 59.554 43.478 0.00 0.00 38.77 3.13
6169 8468 4.024556 CCATTCAAGCGTCAGGATTATGAC 60.025 45.833 0.00 0.00 45.01 3.06
6182 8481 4.354587 GAGAAATTTAGGCCATTCAAGCG 58.645 43.478 5.01 0.00 0.00 4.68
6186 8485 3.694072 CACGGAGAAATTTAGGCCATTCA 59.306 43.478 5.01 0.00 0.00 2.57
6208 8507 4.025401 CACAAAGACGGCACCGCC 62.025 66.667 9.43 0.00 46.75 6.13
6209 8508 4.025401 CCACAAAGACGGCACCGC 62.025 66.667 9.43 2.09 44.19 5.68
6210 8509 2.590575 ACCACAAAGACGGCACCG 60.591 61.111 7.71 7.71 46.03 4.94
6212 8511 1.507141 CCAGACCACAAAGACGGCAC 61.507 60.000 0.00 0.00 0.00 5.01
6214 8513 2.617274 GCCAGACCACAAAGACGGC 61.617 63.158 0.00 0.00 0.00 5.68
6215 8514 1.966451 GGCCAGACCACAAAGACGG 60.966 63.158 0.00 0.00 38.86 4.79
6216 8515 1.071471 AGGCCAGACCACAAAGACG 59.929 57.895 5.01 0.00 43.14 4.18
6217 8516 0.179018 ACAGGCCAGACCACAAAGAC 60.179 55.000 5.01 0.00 43.14 3.01
6218 8517 0.550914 AACAGGCCAGACCACAAAGA 59.449 50.000 5.01 0.00 43.14 2.52
6219 8518 1.067516 CAAACAGGCCAGACCACAAAG 59.932 52.381 5.01 0.00 43.14 2.77
6220 8519 1.110442 CAAACAGGCCAGACCACAAA 58.890 50.000 5.01 0.00 43.14 2.83
6222 8521 1.152777 CCAAACAGGCCAGACCACA 60.153 57.895 5.01 0.00 43.14 4.17
6225 8524 1.515521 CGTTCCAAACAGGCCAGACC 61.516 60.000 5.01 0.00 37.29 3.85
6226 8525 0.818040 ACGTTCCAAACAGGCCAGAC 60.818 55.000 5.01 0.00 37.29 3.51
6232 8532 1.663695 ACTCACACGTTCCAAACAGG 58.336 50.000 0.00 0.00 39.47 4.00
6245 8545 2.054799 AGAGCCCCTGTAAAACTCACA 58.945 47.619 0.00 0.00 0.00 3.58
6250 8550 2.568003 GGCAGAGCCCCTGTAAAAC 58.432 57.895 0.00 0.00 44.06 2.43
6260 8560 1.153765 GGCAAATTTCGGCAGAGCC 60.154 57.895 0.00 0.00 46.75 4.70
6261 8561 0.174162 ATGGCAAATTTCGGCAGAGC 59.826 50.000 17.20 4.91 42.76 4.09
6268 8568 3.927758 TGATGCAGAAATGGCAAATTTCG 59.072 39.130 14.79 11.88 45.60 3.46
6269 8569 5.866335 TTGATGCAGAAATGGCAAATTTC 57.134 34.783 13.51 13.51 45.60 2.17
6270 8570 5.064198 CGATTGATGCAGAAATGGCAAATTT 59.936 36.000 0.00 0.00 45.60 1.82
6275 8701 2.093890 ACGATTGATGCAGAAATGGCA 58.906 42.857 1.59 0.00 46.66 4.92
6276 8702 2.456989 CACGATTGATGCAGAAATGGC 58.543 47.619 1.59 0.00 0.00 4.40
6282 8708 1.194218 TCTCCCACGATTGATGCAGA 58.806 50.000 0.00 0.00 0.00 4.26
6317 8743 8.100164 AGGTTGAGGAAACATTTGAAAAGAAAA 58.900 29.630 0.00 0.00 40.86 2.29
6389 8838 6.365970 TTCCTATCATATCCTCCTCTTTGC 57.634 41.667 0.00 0.00 0.00 3.68
6409 8860 3.047735 CCAAACGGCCACCTTTCC 58.952 61.111 2.24 0.00 0.00 3.13
6455 8909 3.303761 TTTCTCGGCCCGCGATCAA 62.304 57.895 8.23 0.00 0.00 2.57
6469 8923 1.275291 TGGCGAGGACGATTTCTTTCT 59.725 47.619 0.00 0.00 42.66 2.52
6538 9001 8.325282 GGTTCAACTTTTTATTCAGAAAAACCG 58.675 33.333 0.00 0.00 34.23 4.44
6542 9005 7.773149 TCGGGTTCAACTTTTTATTCAGAAAA 58.227 30.769 0.00 0.00 0.00 2.29
6563 9026 0.537371 ACAAGCCAAGTTCCTTCGGG 60.537 55.000 0.00 0.00 0.00 5.14
6564 9027 0.593128 CACAAGCCAAGTTCCTTCGG 59.407 55.000 0.00 0.00 0.00 4.30
6586 9049 0.031721 GAATCTATCGACCGGGCGTT 59.968 55.000 32.26 25.28 0.00 4.84
6592 9055 8.354011 AGATTTTTACAAGAATCTATCGACCG 57.646 34.615 6.07 0.00 39.99 4.79
6593 9056 9.535878 AGAGATTTTTACAAGAATCTATCGACC 57.464 33.333 7.50 0.00 41.39 4.79
6599 9062 8.035394 AGCGTGAGAGATTTTTACAAGAATCTA 58.965 33.333 7.50 0.00 41.39 1.98
6605 9068 4.452455 ACCAGCGTGAGAGATTTTTACAAG 59.548 41.667 0.00 0.00 0.00 3.16
6606 9069 4.385825 ACCAGCGTGAGAGATTTTTACAA 58.614 39.130 0.00 0.00 0.00 2.41
6638 9108 0.397187 TCGGATCGTTTTTGGTGGGA 59.603 50.000 0.00 0.00 0.00 4.37
6639 9109 1.459450 ATCGGATCGTTTTTGGTGGG 58.541 50.000 0.00 0.00 0.00 4.61
6641 9111 3.058570 TGTCAATCGGATCGTTTTTGGTG 60.059 43.478 0.00 0.00 0.00 4.17
6642 9112 3.142951 TGTCAATCGGATCGTTTTTGGT 58.857 40.909 0.00 0.00 0.00 3.67
6643 9113 3.822594 TGTCAATCGGATCGTTTTTGG 57.177 42.857 0.00 0.00 0.00 3.28
6644 9114 5.116983 CCTTTTGTCAATCGGATCGTTTTTG 59.883 40.000 0.00 0.00 0.00 2.44
6649 9119 3.328382 TCCTTTTGTCAATCGGATCGT 57.672 42.857 0.00 0.00 0.00 3.73
6662 9132 1.341209 GGAGGGTGCTGTTTCCTTTTG 59.659 52.381 0.00 0.00 0.00 2.44
6684 9154 1.725164 GACGATGAAACAACGAGGGTC 59.275 52.381 8.23 0.00 33.96 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.