Multiple sequence alignment - TraesCS7A01G308200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G308200 chr7A 100.000 4737 0 0 1 4737 435973271 435968535 0.000000e+00 8748.0
1 TraesCS7A01G308200 chr7A 95.246 610 27 2 4129 4737 27634363 27634971 0.000000e+00 965.0
2 TraesCS7A01G308200 chr7A 92.724 591 41 2 4148 4737 679812844 679812255 0.000000e+00 852.0
3 TraesCS7A01G308200 chr7A 98.738 317 3 1 1 316 630669563 630669247 3.200000e-156 562.0
4 TraesCS7A01G308200 chr7D 94.702 3662 99 19 449 4069 386649778 386646171 0.000000e+00 5600.0
5 TraesCS7A01G308200 chr7B 94.088 3620 123 24 513 4069 381478831 381475240 0.000000e+00 5415.0
6 TraesCS7A01G308200 chr7B 88.506 87 10 0 4129 4215 747174409 747174495 6.480000e-19 106.0
7 TraesCS7A01G308200 chr4A 97.213 610 15 2 4129 4737 617913945 617914553 0.000000e+00 1031.0
8 TraesCS7A01G308200 chr4A 95.638 619 16 3 4129 4737 722267516 722266899 0.000000e+00 983.0
9 TraesCS7A01G308200 chr3A 95.269 613 23 3 4130 4737 710247293 710247904 0.000000e+00 966.0
10 TraesCS7A01G308200 chr3A 99.048 315 3 0 1 315 477604670 477604984 2.470000e-157 566.0
11 TraesCS7A01G308200 chr3A 98.738 317 3 1 1 317 746588156 746588471 3.200000e-156 562.0
12 TraesCS7A01G308200 chr3B 95.402 609 19 5 4129 4737 825273888 825274487 0.000000e+00 961.0
13 TraesCS7A01G308200 chr3B 87.226 274 34 1 43 316 602908849 602908577 1.280000e-80 311.0
14 TraesCS7A01G308200 chr3B 85.455 275 39 1 42 316 202590391 202590118 7.760000e-73 285.0
15 TraesCS7A01G308200 chr4B 93.409 531 33 2 4208 4737 24674488 24673959 0.000000e+00 785.0
16 TraesCS7A01G308200 chr5A 95.074 406 18 2 4178 4582 670428561 670428965 5.170000e-179 638.0
17 TraesCS7A01G308200 chr5A 93.130 131 7 2 4608 4737 487927499 487927628 1.740000e-44 191.0
18 TraesCS7A01G308200 chr5B 94.828 406 19 2 4178 4582 145010480 145010884 2.410000e-177 632.0
19 TraesCS7A01G308200 chr5B 85.091 275 40 1 42 316 430265864 430266137 3.610000e-71 279.0
20 TraesCS7A01G308200 chr5B 95.625 160 4 3 4580 4737 145010977 145011135 2.190000e-63 254.0
21 TraesCS7A01G308200 chr6A 99.684 316 1 0 1 316 256323195 256323510 3.180000e-161 579.0
22 TraesCS7A01G308200 chr1B 85.145 276 33 8 44 316 101184282 101184552 4.670000e-70 276.0
23 TraesCS7A01G308200 chrUn 84.727 275 41 1 42 316 343939296 343939569 1.680000e-69 274.0
24 TraesCS7A01G308200 chr2A 95.420 131 5 1 318 448 669633963 669633834 1.730000e-49 207.0
25 TraesCS7A01G308200 chr1A 93.827 81 5 0 4135 4215 403625609 403625529 6.440000e-24 122.0
26 TraesCS7A01G308200 chr5D 90.476 63 5 1 388 450 538184614 538184553 1.090000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G308200 chr7A 435968535 435973271 4736 True 8748 8748 100.0000 1 4737 1 chr7A.!!$R1 4736
1 TraesCS7A01G308200 chr7A 27634363 27634971 608 False 965 965 95.2460 4129 4737 1 chr7A.!!$F1 608
2 TraesCS7A01G308200 chr7A 679812255 679812844 589 True 852 852 92.7240 4148 4737 1 chr7A.!!$R3 589
3 TraesCS7A01G308200 chr7D 386646171 386649778 3607 True 5600 5600 94.7020 449 4069 1 chr7D.!!$R1 3620
4 TraesCS7A01G308200 chr7B 381475240 381478831 3591 True 5415 5415 94.0880 513 4069 1 chr7B.!!$R1 3556
5 TraesCS7A01G308200 chr4A 617913945 617914553 608 False 1031 1031 97.2130 4129 4737 1 chr4A.!!$F1 608
6 TraesCS7A01G308200 chr4A 722266899 722267516 617 True 983 983 95.6380 4129 4737 1 chr4A.!!$R1 608
7 TraesCS7A01G308200 chr3A 710247293 710247904 611 False 966 966 95.2690 4130 4737 1 chr3A.!!$F2 607
8 TraesCS7A01G308200 chr3B 825273888 825274487 599 False 961 961 95.4020 4129 4737 1 chr3B.!!$F1 608
9 TraesCS7A01G308200 chr4B 24673959 24674488 529 True 785 785 93.4090 4208 4737 1 chr4B.!!$R1 529
10 TraesCS7A01G308200 chr5B 145010480 145011135 655 False 443 632 95.2265 4178 4737 2 chr5B.!!$F2 559

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
662 669 0.033642 TGTCCCGTTGTAATGCACGA 59.966 50.000 0.00 0.0 0.00 4.35 F
726 761 0.533491 TCTTGGCGCACCTATTACGT 59.467 50.000 10.83 0.0 36.63 3.57 F
1888 1956 1.376037 CGCCGCCTCTCTTTTTCCT 60.376 57.895 0.00 0.0 0.00 3.36 F
2252 2327 4.468153 AGGGAAACTATTGGTGAGAGACTC 59.532 45.833 0.00 0.0 0.00 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1962 2030 1.603802 ACACACAGTTGATTTCGCAGG 59.396 47.619 0.00 0.00 0.00 4.85 R
2329 2404 5.238214 GCATGGTAGAGGATAAGCTTTTGAG 59.762 44.000 3.20 0.00 0.00 3.02 R
3416 3491 0.951558 TTGCTTTCCGTCTTGCCTTC 59.048 50.000 0.00 0.00 0.00 3.46 R
4105 4180 0.030235 TCAGTCGAACGTGGACACAG 59.970 55.000 18.72 10.26 36.87 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.790962 CATGGCCGCAGCTCCTGT 62.791 66.667 0.00 0.00 39.73 4.00
19 20 4.790962 ATGGCCGCAGCTCCTGTG 62.791 66.667 0.00 0.00 41.13 3.66
21 22 4.704833 GGCCGCAGCTCCTGTGAA 62.705 66.667 7.31 0.00 43.78 3.18
22 23 2.669569 GCCGCAGCTCCTGTGAAA 60.670 61.111 7.31 0.00 43.78 2.69
23 24 2.260869 GCCGCAGCTCCTGTGAAAA 61.261 57.895 7.31 0.00 43.78 2.29
24 25 1.871772 CCGCAGCTCCTGTGAAAAG 59.128 57.895 7.31 0.00 43.78 2.27
25 26 1.580845 CCGCAGCTCCTGTGAAAAGG 61.581 60.000 7.31 0.00 43.78 3.11
26 27 0.603707 CGCAGCTCCTGTGAAAAGGA 60.604 55.000 0.00 0.00 43.78 3.36
27 28 1.609208 GCAGCTCCTGTGAAAAGGAA 58.391 50.000 0.00 0.00 45.81 3.36
28 29 1.538950 GCAGCTCCTGTGAAAAGGAAG 59.461 52.381 0.00 0.00 45.81 3.46
29 30 2.157738 CAGCTCCTGTGAAAAGGAAGG 58.842 52.381 0.00 0.00 45.81 3.46
30 31 2.057922 AGCTCCTGTGAAAAGGAAGGA 58.942 47.619 0.00 0.00 45.81 3.36
34 35 2.639839 TCCTGTGAAAAGGAAGGAGAGG 59.360 50.000 0.00 0.00 43.57 3.69
35 36 2.639839 CCTGTGAAAAGGAAGGAGAGGA 59.360 50.000 0.00 0.00 40.02 3.71
36 37 3.307339 CCTGTGAAAAGGAAGGAGAGGAG 60.307 52.174 0.00 0.00 40.02 3.69
37 38 2.639839 TGTGAAAAGGAAGGAGAGGAGG 59.360 50.000 0.00 0.00 0.00 4.30
38 39 2.026729 GTGAAAAGGAAGGAGAGGAGGG 60.027 54.545 0.00 0.00 0.00 4.30
39 40 2.158004 TGAAAAGGAAGGAGAGGAGGGA 60.158 50.000 0.00 0.00 0.00 4.20
40 41 2.743131 AAAGGAAGGAGAGGAGGGAA 57.257 50.000 0.00 0.00 0.00 3.97
41 42 2.262266 AAGGAAGGAGAGGAGGGAAG 57.738 55.000 0.00 0.00 0.00 3.46
42 43 1.398799 AGGAAGGAGAGGAGGGAAGA 58.601 55.000 0.00 0.00 0.00 2.87
43 44 1.290732 AGGAAGGAGAGGAGGGAAGAG 59.709 57.143 0.00 0.00 0.00 2.85
44 45 1.289530 GGAAGGAGAGGAGGGAAGAGA 59.710 57.143 0.00 0.00 0.00 3.10
45 46 2.292587 GGAAGGAGAGGAGGGAAGAGAA 60.293 54.545 0.00 0.00 0.00 2.87
46 47 2.846665 AGGAGAGGAGGGAAGAGAAG 57.153 55.000 0.00 0.00 0.00 2.85
47 48 1.290732 AGGAGAGGAGGGAAGAGAAGG 59.709 57.143 0.00 0.00 0.00 3.46
48 49 1.289530 GGAGAGGAGGGAAGAGAAGGA 59.710 57.143 0.00 0.00 0.00 3.36
49 50 2.292587 GGAGAGGAGGGAAGAGAAGGAA 60.293 54.545 0.00 0.00 0.00 3.36
50 51 3.445987 GAGAGGAGGGAAGAGAAGGAAA 58.554 50.000 0.00 0.00 0.00 3.13
51 52 3.449918 AGAGGAGGGAAGAGAAGGAAAG 58.550 50.000 0.00 0.00 0.00 2.62
52 53 2.503765 GAGGAGGGAAGAGAAGGAAAGG 59.496 54.545 0.00 0.00 0.00 3.11
53 54 2.114506 AGGAGGGAAGAGAAGGAAAGGA 59.885 50.000 0.00 0.00 0.00 3.36
54 55 2.503765 GGAGGGAAGAGAAGGAAAGGAG 59.496 54.545 0.00 0.00 0.00 3.69
55 56 3.445987 GAGGGAAGAGAAGGAAAGGAGA 58.554 50.000 0.00 0.00 0.00 3.71
56 57 3.449918 AGGGAAGAGAAGGAAAGGAGAG 58.550 50.000 0.00 0.00 0.00 3.20
57 58 3.078305 AGGGAAGAGAAGGAAAGGAGAGA 59.922 47.826 0.00 0.00 0.00 3.10
58 59 3.450817 GGGAAGAGAAGGAAAGGAGAGAG 59.549 52.174 0.00 0.00 0.00 3.20
59 60 3.450817 GGAAGAGAAGGAAAGGAGAGAGG 59.549 52.174 0.00 0.00 0.00 3.69
60 61 4.349365 GAAGAGAAGGAAAGGAGAGAGGA 58.651 47.826 0.00 0.00 0.00 3.71
61 62 3.981212 AGAGAAGGAAAGGAGAGAGGAG 58.019 50.000 0.00 0.00 0.00 3.69
62 63 3.596046 AGAGAAGGAAAGGAGAGAGGAGA 59.404 47.826 0.00 0.00 0.00 3.71
63 64 3.699538 GAGAAGGAAAGGAGAGAGGAGAC 59.300 52.174 0.00 0.00 0.00 3.36
64 65 3.076785 AGAAGGAAAGGAGAGAGGAGACA 59.923 47.826 0.00 0.00 0.00 3.41
65 66 3.551635 AGGAAAGGAGAGAGGAGACAA 57.448 47.619 0.00 0.00 0.00 3.18
66 67 3.440127 AGGAAAGGAGAGAGGAGACAAG 58.560 50.000 0.00 0.00 0.00 3.16
67 68 3.076785 AGGAAAGGAGAGAGGAGACAAGA 59.923 47.826 0.00 0.00 0.00 3.02
68 69 4.030216 GGAAAGGAGAGAGGAGACAAGAT 58.970 47.826 0.00 0.00 0.00 2.40
69 70 4.141959 GGAAAGGAGAGAGGAGACAAGATG 60.142 50.000 0.00 0.00 0.00 2.90
70 71 3.756082 AGGAGAGAGGAGACAAGATGT 57.244 47.619 0.00 0.00 0.00 3.06
71 72 3.364549 AGGAGAGAGGAGACAAGATGTG 58.635 50.000 0.00 0.00 0.00 3.21
72 73 3.096092 GGAGAGAGGAGACAAGATGTGT 58.904 50.000 0.00 0.00 45.74 3.72
73 74 3.119173 GGAGAGAGGAGACAAGATGTGTG 60.119 52.174 0.00 0.00 41.96 3.82
74 75 2.830923 AGAGAGGAGACAAGATGTGTGG 59.169 50.000 0.00 0.00 41.96 4.17
75 76 1.277557 AGAGGAGACAAGATGTGTGGC 59.722 52.381 0.00 0.00 41.96 5.01
76 77 1.277557 GAGGAGACAAGATGTGTGGCT 59.722 52.381 0.00 0.00 41.96 4.75
77 78 1.002888 AGGAGACAAGATGTGTGGCTG 59.997 52.381 0.00 0.00 41.96 4.85
78 79 1.002430 GGAGACAAGATGTGTGGCTGA 59.998 52.381 0.00 0.00 41.96 4.26
79 80 2.072298 GAGACAAGATGTGTGGCTGAC 58.928 52.381 0.00 0.00 41.96 3.51
80 81 1.417517 AGACAAGATGTGTGGCTGACA 59.582 47.619 0.00 0.00 41.96 3.58
81 82 1.802960 GACAAGATGTGTGGCTGACAG 59.197 52.381 0.00 0.00 41.96 3.51
82 83 1.162698 CAAGATGTGTGGCTGACAGG 58.837 55.000 4.26 0.00 34.28 4.00
83 84 0.767375 AAGATGTGTGGCTGACAGGT 59.233 50.000 4.26 0.00 34.28 4.00
84 85 0.035881 AGATGTGTGGCTGACAGGTG 59.964 55.000 4.26 0.00 34.28 4.00
85 86 0.957395 GATGTGTGGCTGACAGGTGG 60.957 60.000 4.26 0.00 34.28 4.61
86 87 2.281761 GTGTGGCTGACAGGTGGG 60.282 66.667 4.26 0.00 34.28 4.61
87 88 2.447572 TGTGGCTGACAGGTGGGA 60.448 61.111 4.26 0.00 0.00 4.37
88 89 2.032681 GTGGCTGACAGGTGGGAC 59.967 66.667 4.26 0.00 0.00 4.46
89 90 3.249189 TGGCTGACAGGTGGGACC 61.249 66.667 4.26 0.00 38.99 4.46
90 91 4.035102 GGCTGACAGGTGGGACCC 62.035 72.222 2.45 2.45 39.75 4.46
91 92 2.930562 GCTGACAGGTGGGACCCT 60.931 66.667 13.00 0.00 39.75 4.34
104 105 3.249687 GACCCTGGTCCACATCAAC 57.750 57.895 4.93 0.00 39.08 3.18
105 106 0.400213 GACCCTGGTCCACATCAACA 59.600 55.000 4.93 0.00 39.08 3.33
106 107 0.401738 ACCCTGGTCCACATCAACAG 59.598 55.000 0.00 0.00 0.00 3.16
107 108 0.322816 CCCTGGTCCACATCAACAGG 60.323 60.000 0.00 0.00 46.36 4.00
108 109 0.401738 CCTGGTCCACATCAACAGGT 59.598 55.000 0.00 0.00 42.83 4.00
109 110 1.611673 CCTGGTCCACATCAACAGGTC 60.612 57.143 0.00 0.00 42.83 3.85
110 111 1.072173 CTGGTCCACATCAACAGGTCA 59.928 52.381 0.00 0.00 0.00 4.02
111 112 1.492599 TGGTCCACATCAACAGGTCAA 59.507 47.619 0.00 0.00 0.00 3.18
112 113 2.092158 TGGTCCACATCAACAGGTCAAA 60.092 45.455 0.00 0.00 0.00 2.69
113 114 2.293399 GGTCCACATCAACAGGTCAAAC 59.707 50.000 0.00 0.00 0.00 2.93
114 115 2.948979 GTCCACATCAACAGGTCAAACA 59.051 45.455 0.00 0.00 0.00 2.83
115 116 3.569701 GTCCACATCAACAGGTCAAACAT 59.430 43.478 0.00 0.00 0.00 2.71
116 117 4.037923 GTCCACATCAACAGGTCAAACATT 59.962 41.667 0.00 0.00 0.00 2.71
117 118 5.240623 GTCCACATCAACAGGTCAAACATTA 59.759 40.000 0.00 0.00 0.00 1.90
118 119 5.830457 TCCACATCAACAGGTCAAACATTAA 59.170 36.000 0.00 0.00 0.00 1.40
119 120 5.920273 CCACATCAACAGGTCAAACATTAAC 59.080 40.000 0.00 0.00 0.00 2.01
120 121 6.239008 CCACATCAACAGGTCAAACATTAACT 60.239 38.462 0.00 0.00 0.00 2.24
121 122 7.040755 CCACATCAACAGGTCAAACATTAACTA 60.041 37.037 0.00 0.00 0.00 2.24
122 123 8.514594 CACATCAACAGGTCAAACATTAACTAT 58.485 33.333 0.00 0.00 0.00 2.12
123 124 8.514594 ACATCAACAGGTCAAACATTAACTATG 58.485 33.333 0.00 0.00 40.26 2.23
124 125 8.729756 CATCAACAGGTCAAACATTAACTATGA 58.270 33.333 0.00 0.00 37.69 2.15
125 126 8.094798 TCAACAGGTCAAACATTAACTATGAC 57.905 34.615 0.00 0.00 39.65 3.06
126 127 7.936847 TCAACAGGTCAAACATTAACTATGACT 59.063 33.333 10.49 0.00 40.12 3.41
127 128 8.567948 CAACAGGTCAAACATTAACTATGACTT 58.432 33.333 10.49 3.25 40.12 3.01
128 129 8.099364 ACAGGTCAAACATTAACTATGACTTG 57.901 34.615 16.31 16.31 46.96 3.16
129 130 8.099364 CAGGTCAAACATTAACTATGACTTGT 57.901 34.615 12.53 0.00 40.86 3.16
130 131 8.230486 CAGGTCAAACATTAACTATGACTTGTC 58.770 37.037 12.53 0.00 40.86 3.18
131 132 8.157476 AGGTCAAACATTAACTATGACTTGTCT 58.843 33.333 10.49 0.79 40.12 3.41
132 133 8.784043 GGTCAAACATTAACTATGACTTGTCTT 58.216 33.333 10.49 0.00 40.12 3.01
133 134 9.813080 GTCAAACATTAACTATGACTTGTCTTC 57.187 33.333 2.35 0.00 37.87 2.87
134 135 8.708742 TCAAACATTAACTATGACTTGTCTTCG 58.291 33.333 2.35 0.00 37.69 3.79
135 136 6.648725 ACATTAACTATGACTTGTCTTCGC 57.351 37.500 2.35 0.00 37.69 4.70
136 137 5.581085 ACATTAACTATGACTTGTCTTCGCC 59.419 40.000 2.35 0.00 37.69 5.54
137 138 3.678056 AACTATGACTTGTCTTCGCCA 57.322 42.857 2.35 0.00 0.00 5.69
138 139 2.960819 ACTATGACTTGTCTTCGCCAC 58.039 47.619 2.35 0.00 0.00 5.01
139 140 2.299013 ACTATGACTTGTCTTCGCCACA 59.701 45.455 2.35 0.00 0.00 4.17
140 141 2.479566 ATGACTTGTCTTCGCCACAT 57.520 45.000 2.35 0.00 0.00 3.21
141 142 1.795768 TGACTTGTCTTCGCCACATC 58.204 50.000 2.35 0.00 0.00 3.06
142 143 1.069978 TGACTTGTCTTCGCCACATCA 59.930 47.619 2.35 0.00 0.00 3.07
143 144 1.728971 GACTTGTCTTCGCCACATCAG 59.271 52.381 0.00 0.00 0.00 2.90
144 145 1.081892 CTTGTCTTCGCCACATCAGG 58.918 55.000 0.00 0.00 0.00 3.86
154 155 2.540265 CCACATCAGGCTGGATAGAC 57.460 55.000 15.73 0.00 0.00 2.59
155 156 1.764723 CCACATCAGGCTGGATAGACA 59.235 52.381 15.73 0.00 32.87 3.41
156 157 2.224233 CCACATCAGGCTGGATAGACAG 60.224 54.545 15.73 0.00 41.41 3.51
157 158 2.045524 ACATCAGGCTGGATAGACAGG 58.954 52.381 15.73 0.00 38.90 4.00
158 159 2.045524 CATCAGGCTGGATAGACAGGT 58.954 52.381 15.73 0.00 38.90 4.00
159 160 1.781786 TCAGGCTGGATAGACAGGTC 58.218 55.000 15.73 0.00 38.90 3.85
160 161 0.755686 CAGGCTGGATAGACAGGTCC 59.244 60.000 6.61 0.00 38.90 4.46
161 162 0.399233 AGGCTGGATAGACAGGTCCC 60.399 60.000 0.00 0.00 38.90 4.46
162 163 0.691078 GGCTGGATAGACAGGTCCCA 60.691 60.000 0.00 0.00 38.90 4.37
163 164 0.466124 GCTGGATAGACAGGTCCCAC 59.534 60.000 0.00 0.00 38.90 4.61
164 165 1.123928 CTGGATAGACAGGTCCCACC 58.876 60.000 0.00 0.00 38.99 4.61
165 166 0.326238 TGGATAGACAGGTCCCACCC 60.326 60.000 0.00 0.00 39.75 4.61
166 167 1.400530 GGATAGACAGGTCCCACCCG 61.401 65.000 0.00 0.00 39.75 5.28
167 168 0.686769 GATAGACAGGTCCCACCCGT 60.687 60.000 0.00 0.00 39.75 5.28
168 169 0.686769 ATAGACAGGTCCCACCCGTC 60.687 60.000 1.34 1.34 44.18 4.79
169 170 2.084089 TAGACAGGTCCCACCCGTCA 62.084 60.000 10.90 0.00 45.81 4.35
170 171 2.923035 ACAGGTCCCACCCGTCAG 60.923 66.667 0.00 0.00 39.75 3.51
171 172 2.923035 CAGGTCCCACCCGTCAGT 60.923 66.667 0.00 0.00 39.75 3.41
172 173 2.122547 AGGTCCCACCCGTCAGTT 60.123 61.111 0.00 0.00 39.75 3.16
173 174 1.768888 AGGTCCCACCCGTCAGTTT 60.769 57.895 0.00 0.00 39.75 2.66
174 175 1.149854 GGTCCCACCCGTCAGTTTT 59.850 57.895 0.00 0.00 30.04 2.43
175 176 0.397564 GGTCCCACCCGTCAGTTTTA 59.602 55.000 0.00 0.00 30.04 1.52
176 177 1.516161 GTCCCACCCGTCAGTTTTAC 58.484 55.000 0.00 0.00 0.00 2.01
177 178 1.071228 GTCCCACCCGTCAGTTTTACT 59.929 52.381 0.00 0.00 0.00 2.24
178 179 2.299867 GTCCCACCCGTCAGTTTTACTA 59.700 50.000 0.00 0.00 0.00 1.82
179 180 3.055602 GTCCCACCCGTCAGTTTTACTAT 60.056 47.826 0.00 0.00 0.00 2.12
180 181 3.583966 TCCCACCCGTCAGTTTTACTATT 59.416 43.478 0.00 0.00 0.00 1.73
181 182 4.776837 TCCCACCCGTCAGTTTTACTATTA 59.223 41.667 0.00 0.00 0.00 0.98
182 183 5.105228 TCCCACCCGTCAGTTTTACTATTAG 60.105 44.000 0.00 0.00 0.00 1.73
183 184 5.105228 CCCACCCGTCAGTTTTACTATTAGA 60.105 44.000 0.00 0.00 0.00 2.10
184 185 5.809051 CCACCCGTCAGTTTTACTATTAGAC 59.191 44.000 0.00 0.00 0.00 2.59
185 186 5.514204 CACCCGTCAGTTTTACTATTAGACG 59.486 44.000 0.00 0.00 39.26 4.18
186 187 4.501921 CCCGTCAGTTTTACTATTAGACGC 59.498 45.833 0.00 0.00 38.66 5.19
187 188 4.203764 CCGTCAGTTTTACTATTAGACGCG 59.796 45.833 3.53 3.53 38.66 6.01
188 189 4.316240 CGTCAGTTTTACTATTAGACGCGC 60.316 45.833 5.73 0.00 35.31 6.86
189 190 4.797349 GTCAGTTTTACTATTAGACGCGCT 59.203 41.667 5.73 7.21 0.00 5.92
190 191 5.032863 TCAGTTTTACTATTAGACGCGCTC 58.967 41.667 5.73 2.87 0.00 5.03
191 192 4.796830 CAGTTTTACTATTAGACGCGCTCA 59.203 41.667 5.73 0.00 0.00 4.26
192 193 5.287752 CAGTTTTACTATTAGACGCGCTCAA 59.712 40.000 5.73 0.00 0.00 3.02
193 194 6.019801 CAGTTTTACTATTAGACGCGCTCAAT 60.020 38.462 5.73 5.40 0.00 2.57
194 195 6.534079 AGTTTTACTATTAGACGCGCTCAATT 59.466 34.615 5.73 0.00 0.00 2.32
195 196 6.897259 TTTACTATTAGACGCGCTCAATTT 57.103 33.333 5.73 0.00 0.00 1.82
196 197 6.506464 TTACTATTAGACGCGCTCAATTTC 57.494 37.500 5.73 0.00 0.00 2.17
197 198 2.998668 ATTAGACGCGCTCAATTTCG 57.001 45.000 5.73 0.00 0.00 3.46
198 199 0.996462 TTAGACGCGCTCAATTTCGG 59.004 50.000 5.73 0.00 0.00 4.30
199 200 0.171679 TAGACGCGCTCAATTTCGGA 59.828 50.000 5.73 0.00 0.00 4.55
200 201 0.460284 AGACGCGCTCAATTTCGGAT 60.460 50.000 5.73 0.00 0.00 4.18
201 202 0.042967 GACGCGCTCAATTTCGGATC 60.043 55.000 5.73 0.00 0.00 3.36
202 203 0.739462 ACGCGCTCAATTTCGGATCA 60.739 50.000 5.73 0.00 0.00 2.92
203 204 0.042708 CGCGCTCAATTTCGGATCAG 60.043 55.000 5.56 0.00 0.00 2.90
204 205 1.009829 GCGCTCAATTTCGGATCAGT 58.990 50.000 0.00 0.00 0.00 3.41
205 206 1.267732 GCGCTCAATTTCGGATCAGTG 60.268 52.381 0.00 0.00 0.00 3.66
206 207 1.267732 CGCTCAATTTCGGATCAGTGC 60.268 52.381 0.00 0.00 0.00 4.40
207 208 1.267732 GCTCAATTTCGGATCAGTGCG 60.268 52.381 0.00 0.00 40.90 5.34
208 209 2.270923 CTCAATTTCGGATCAGTGCGA 58.729 47.619 0.00 0.00 46.75 5.10
213 214 3.832704 TCGGATCAGTGCGATTTGT 57.167 47.368 0.00 0.00 43.48 2.83
214 215 2.093306 TCGGATCAGTGCGATTTGTT 57.907 45.000 0.00 0.00 43.48 2.83
215 216 3.239587 TCGGATCAGTGCGATTTGTTA 57.760 42.857 0.00 0.00 43.48 2.41
216 217 3.792401 TCGGATCAGTGCGATTTGTTAT 58.208 40.909 0.00 0.00 43.48 1.89
217 218 4.188462 TCGGATCAGTGCGATTTGTTATT 58.812 39.130 0.00 0.00 43.48 1.40
218 219 4.270084 TCGGATCAGTGCGATTTGTTATTC 59.730 41.667 0.00 0.00 43.48 1.75
219 220 4.033932 CGGATCAGTGCGATTTGTTATTCA 59.966 41.667 0.00 0.00 42.26 2.57
220 221 5.266242 GGATCAGTGCGATTTGTTATTCAC 58.734 41.667 0.00 0.00 33.17 3.18
221 222 5.065218 GGATCAGTGCGATTTGTTATTCACT 59.935 40.000 0.00 0.00 33.17 3.41
222 223 6.257849 GGATCAGTGCGATTTGTTATTCACTA 59.742 38.462 0.00 0.00 33.17 2.74
223 224 6.647212 TCAGTGCGATTTGTTATTCACTAG 57.353 37.500 0.00 0.00 33.93 2.57
224 225 5.580691 TCAGTGCGATTTGTTATTCACTAGG 59.419 40.000 0.00 0.00 33.93 3.02
225 226 4.332819 AGTGCGATTTGTTATTCACTAGGC 59.667 41.667 0.00 0.00 33.56 3.93
226 227 3.308595 TGCGATTTGTTATTCACTAGGCG 59.691 43.478 0.00 0.00 0.00 5.52
227 228 3.844943 GCGATTTGTTATTCACTAGGCGC 60.845 47.826 0.00 0.00 31.51 6.53
228 229 3.308595 CGATTTGTTATTCACTAGGCGCA 59.691 43.478 10.83 0.00 0.00 6.09
229 230 4.550831 CGATTTGTTATTCACTAGGCGCAG 60.551 45.833 10.83 0.19 0.00 5.18
230 231 3.603158 TTGTTATTCACTAGGCGCAGA 57.397 42.857 10.83 0.00 0.00 4.26
231 232 3.603158 TGTTATTCACTAGGCGCAGAA 57.397 42.857 10.83 5.31 0.00 3.02
232 233 3.521560 TGTTATTCACTAGGCGCAGAAG 58.478 45.455 10.83 5.44 0.00 2.85
233 234 3.056107 TGTTATTCACTAGGCGCAGAAGT 60.056 43.478 10.83 6.18 0.00 3.01
234 235 2.015736 ATTCACTAGGCGCAGAAGTG 57.984 50.000 22.69 22.69 41.58 3.16
235 236 0.037326 TTCACTAGGCGCAGAAGTGG 60.037 55.000 25.94 13.79 40.79 4.00
236 237 1.185618 TCACTAGGCGCAGAAGTGGT 61.186 55.000 25.94 6.25 40.79 4.16
237 238 1.016130 CACTAGGCGCAGAAGTGGTG 61.016 60.000 21.58 10.32 37.55 4.17
238 239 1.448540 CTAGGCGCAGAAGTGGTGG 60.449 63.158 10.83 0.00 0.00 4.61
239 240 2.172483 CTAGGCGCAGAAGTGGTGGT 62.172 60.000 10.83 0.00 0.00 4.16
240 241 1.764571 TAGGCGCAGAAGTGGTGGTT 61.765 55.000 10.83 0.00 0.00 3.67
241 242 2.193536 GGCGCAGAAGTGGTGGTTT 61.194 57.895 10.83 0.00 0.00 3.27
242 243 1.733526 GCGCAGAAGTGGTGGTTTT 59.266 52.632 0.30 0.00 0.00 2.43
243 244 0.102300 GCGCAGAAGTGGTGGTTTTT 59.898 50.000 0.30 0.00 0.00 1.94
266 267 8.430801 TTTTGTGATTTTTGGTAAAGATGGTG 57.569 30.769 0.00 0.00 0.00 4.17
267 268 6.095432 TGTGATTTTTGGTAAAGATGGTGG 57.905 37.500 0.00 0.00 0.00 4.61
268 269 5.600484 TGTGATTTTTGGTAAAGATGGTGGT 59.400 36.000 0.00 0.00 0.00 4.16
269 270 6.098982 TGTGATTTTTGGTAAAGATGGTGGTT 59.901 34.615 0.00 0.00 0.00 3.67
270 271 6.989759 GTGATTTTTGGTAAAGATGGTGGTTT 59.010 34.615 0.00 0.00 0.00 3.27
271 272 7.497579 GTGATTTTTGGTAAAGATGGTGGTTTT 59.502 33.333 0.00 0.00 0.00 2.43
272 273 7.497249 TGATTTTTGGTAAAGATGGTGGTTTTG 59.503 33.333 0.00 0.00 0.00 2.44
273 274 4.946478 TTGGTAAAGATGGTGGTTTTGG 57.054 40.909 0.00 0.00 0.00 3.28
274 275 4.186077 TGGTAAAGATGGTGGTTTTGGA 57.814 40.909 0.00 0.00 0.00 3.53
275 276 4.148838 TGGTAAAGATGGTGGTTTTGGAG 58.851 43.478 0.00 0.00 0.00 3.86
276 277 4.149598 GGTAAAGATGGTGGTTTTGGAGT 58.850 43.478 0.00 0.00 0.00 3.85
277 278 5.163077 TGGTAAAGATGGTGGTTTTGGAGTA 60.163 40.000 0.00 0.00 0.00 2.59
278 279 5.949952 GGTAAAGATGGTGGTTTTGGAGTAT 59.050 40.000 0.00 0.00 0.00 2.12
279 280 6.095021 GGTAAAGATGGTGGTTTTGGAGTATC 59.905 42.308 0.00 0.00 0.00 2.24
306 307 2.865551 CACAAATGTGGTGGTTTTGAGC 59.134 45.455 5.63 0.00 42.10 4.26
307 308 2.499289 ACAAATGTGGTGGTTTTGAGCA 59.501 40.909 1.98 0.00 35.03 4.26
308 309 3.055530 ACAAATGTGGTGGTTTTGAGCAA 60.056 39.130 1.98 0.00 35.03 3.91
309 310 4.128643 CAAATGTGGTGGTTTTGAGCAAT 58.871 39.130 0.00 0.00 33.24 3.56
310 311 4.420522 AATGTGGTGGTTTTGAGCAATT 57.579 36.364 0.00 0.00 0.00 2.32
311 312 3.902881 TGTGGTGGTTTTGAGCAATTT 57.097 38.095 0.00 0.00 0.00 1.82
312 313 5.543507 ATGTGGTGGTTTTGAGCAATTTA 57.456 34.783 0.00 0.00 0.00 1.40
313 314 4.688021 TGTGGTGGTTTTGAGCAATTTAC 58.312 39.130 0.00 0.00 0.00 2.01
314 315 4.404073 TGTGGTGGTTTTGAGCAATTTACT 59.596 37.500 0.00 0.00 0.00 2.24
315 316 4.982295 GTGGTGGTTTTGAGCAATTTACTC 59.018 41.667 0.00 0.00 34.62 2.59
316 317 4.892934 TGGTGGTTTTGAGCAATTTACTCT 59.107 37.500 6.76 0.00 35.12 3.24
317 318 5.009610 TGGTGGTTTTGAGCAATTTACTCTC 59.990 40.000 6.76 0.00 35.12 3.20
318 319 5.461526 GTGGTTTTGAGCAATTTACTCTCC 58.538 41.667 6.76 5.27 35.12 3.71
319 320 4.215399 TGGTTTTGAGCAATTTACTCTCCG 59.785 41.667 6.76 0.00 35.12 4.63
320 321 4.215613 GGTTTTGAGCAATTTACTCTCCGT 59.784 41.667 6.76 0.00 35.12 4.69
321 322 5.383130 GTTTTGAGCAATTTACTCTCCGTC 58.617 41.667 6.76 0.00 35.12 4.79
322 323 4.537135 TTGAGCAATTTACTCTCCGTCT 57.463 40.909 6.76 0.00 35.12 4.18
323 324 3.849911 TGAGCAATTTACTCTCCGTCTG 58.150 45.455 6.76 0.00 35.12 3.51
324 325 3.509967 TGAGCAATTTACTCTCCGTCTGA 59.490 43.478 6.76 0.00 35.12 3.27
325 326 4.160439 TGAGCAATTTACTCTCCGTCTGAT 59.840 41.667 6.76 0.00 35.12 2.90
326 327 4.437239 AGCAATTTACTCTCCGTCTGATG 58.563 43.478 0.00 0.00 0.00 3.07
327 328 4.081420 AGCAATTTACTCTCCGTCTGATGT 60.081 41.667 0.00 0.00 0.00 3.06
328 329 4.033358 GCAATTTACTCTCCGTCTGATGTG 59.967 45.833 0.00 0.00 0.00 3.21
329 330 3.868757 TTTACTCTCCGTCTGATGTGG 57.131 47.619 0.00 0.00 0.00 4.17
330 331 1.103803 TACTCTCCGTCTGATGTGGC 58.896 55.000 0.00 0.00 0.00 5.01
331 332 0.613292 ACTCTCCGTCTGATGTGGCT 60.613 55.000 0.00 0.00 0.00 4.75
332 333 0.179116 CTCTCCGTCTGATGTGGCTG 60.179 60.000 0.00 0.00 0.00 4.85
333 334 1.812922 CTCCGTCTGATGTGGCTGC 60.813 63.158 0.00 0.00 0.00 5.25
334 335 2.046988 CCGTCTGATGTGGCTGCA 60.047 61.111 0.50 0.00 0.00 4.41
335 336 2.393768 CCGTCTGATGTGGCTGCAC 61.394 63.158 0.50 0.00 0.00 4.57
336 337 1.375140 CGTCTGATGTGGCTGCACT 60.375 57.895 0.50 0.00 0.00 4.40
337 338 0.108662 CGTCTGATGTGGCTGCACTA 60.109 55.000 0.50 0.00 0.00 2.74
338 339 1.649664 GTCTGATGTGGCTGCACTAG 58.350 55.000 0.50 0.00 0.00 2.57
350 351 4.476410 CACTAGCTGCGACGGCGA 62.476 66.667 18.90 0.00 44.10 5.54
351 352 4.180946 ACTAGCTGCGACGGCGAG 62.181 66.667 18.90 10.73 42.66 5.03
373 374 4.742201 CCACAGGCGACCCGACAG 62.742 72.222 0.00 0.00 37.34 3.51
374 375 4.742201 CACAGGCGACCCGACAGG 62.742 72.222 0.00 0.00 37.34 4.00
411 412 6.901081 AAAAAGTTATGCTCTTGGTTAGCT 57.099 33.333 0.00 0.00 40.73 3.32
412 413 6.901081 AAAAGTTATGCTCTTGGTTAGCTT 57.099 33.333 0.00 0.00 40.73 3.74
413 414 5.886960 AAGTTATGCTCTTGGTTAGCTTG 57.113 39.130 0.00 0.00 40.73 4.01
414 415 4.265073 AGTTATGCTCTTGGTTAGCTTGG 58.735 43.478 0.00 0.00 40.73 3.61
415 416 1.467920 ATGCTCTTGGTTAGCTTGGC 58.532 50.000 0.00 0.00 40.73 4.52
416 417 0.609131 TGCTCTTGGTTAGCTTGGCC 60.609 55.000 0.00 0.00 40.73 5.36
417 418 1.315981 GCTCTTGGTTAGCTTGGCCC 61.316 60.000 0.00 0.00 37.01 5.80
418 419 1.002624 TCTTGGTTAGCTTGGCCCG 60.003 57.895 0.00 0.00 0.00 6.13
419 420 2.675075 TTGGTTAGCTTGGCCCGC 60.675 61.111 0.00 2.42 0.00 6.13
420 421 4.733542 TGGTTAGCTTGGCCCGCC 62.734 66.667 10.23 0.00 0.00 6.13
422 423 4.733542 GTTAGCTTGGCCCGCCCA 62.734 66.667 10.23 0.00 43.51 5.36
423 424 4.424711 TTAGCTTGGCCCGCCCAG 62.425 66.667 10.23 2.53 46.39 4.45
427 428 2.917227 CTTGGCCCGCCCAGTTTT 60.917 61.111 0.00 0.00 46.39 2.43
428 429 2.444895 TTGGCCCGCCCAGTTTTT 60.445 55.556 0.00 0.00 46.39 1.94
444 445 2.785713 TTTTTGTTTGTAGCTCCGCC 57.214 45.000 0.00 0.00 0.00 6.13
445 446 1.681538 TTTTGTTTGTAGCTCCGCCA 58.318 45.000 0.00 0.00 0.00 5.69
446 447 0.948678 TTTGTTTGTAGCTCCGCCAC 59.051 50.000 0.00 0.00 0.00 5.01
447 448 0.107831 TTGTTTGTAGCTCCGCCACT 59.892 50.000 0.00 0.00 0.00 4.00
488 489 0.605589 AGGAGAAGTCAGCAACGGAG 59.394 55.000 0.00 0.00 0.00 4.63
489 490 0.603569 GGAGAAGTCAGCAACGGAGA 59.396 55.000 0.00 0.00 0.00 3.71
558 559 0.112606 AGAGAGTTGACCGACCAGGA 59.887 55.000 0.00 0.00 45.00 3.86
576 577 4.082125 CAGGAAGGAAAACTATTGTGGCT 58.918 43.478 0.00 0.00 0.00 4.75
634 641 0.913451 AGAGCAGGCAAGTCCCATCT 60.913 55.000 0.00 0.00 34.51 2.90
662 669 0.033642 TGTCCCGTTGTAATGCACGA 59.966 50.000 0.00 0.00 0.00 4.35
670 705 3.722082 CGTTGTAATGCACGAGCTTCTTC 60.722 47.826 6.36 0.00 42.74 2.87
726 761 0.533491 TCTTGGCGCACCTATTACGT 59.467 50.000 10.83 0.00 36.63 3.57
739 774 2.961526 ATTACGTGATTCGCCAGTCT 57.038 45.000 0.00 0.00 44.19 3.24
816 852 4.713824 TGTCCTGTCCTTTATCTACACG 57.286 45.455 0.00 0.00 0.00 4.49
948 1011 2.218603 GCACGTCCTTTCTTCTTTCCA 58.781 47.619 0.00 0.00 0.00 3.53
963 1026 3.052082 CCAGTTGCTGCACCTCGG 61.052 66.667 0.00 1.45 0.00 4.63
1888 1956 1.376037 CGCCGCCTCTCTTTTTCCT 60.376 57.895 0.00 0.00 0.00 3.36
1962 2030 4.690748 TGTGGAATGTTTCGACAGAGATTC 59.309 41.667 1.60 0.00 42.31 2.52
2056 2127 5.540719 ACTTCTAAGCACTCTTTGGTACTCT 59.459 40.000 0.00 0.00 33.68 3.24
2219 2290 7.254488 GGAAACTTGTCTCTAGTGTCAAACTTC 60.254 40.741 6.07 9.71 40.56 3.01
2233 2308 7.039882 GTGTCAAACTTCGAATAATAGAGGGA 58.960 38.462 0.00 0.00 0.00 4.20
2252 2327 4.468153 AGGGAAACTATTGGTGAGAGACTC 59.532 45.833 0.00 0.00 0.00 3.36
2296 2371 7.921214 TCTCAAGTACTACAGTTTTTGTCTGAG 59.079 37.037 0.00 0.84 41.29 3.35
2329 2404 8.251750 TGTTATACATTATTTCGGAGCATAGC 57.748 34.615 0.00 0.00 0.00 2.97
2782 2857 7.367285 ACTTGCTTTATTTAACAATTCGCAGA 58.633 30.769 0.00 0.00 0.00 4.26
2984 3059 4.641989 GGCATGATTCTGAACTTATGTGGT 59.358 41.667 0.00 0.00 0.00 4.16
3109 3184 4.620086 TGTCTATCCTCTTTACCCTGGA 57.380 45.455 0.00 0.00 0.00 3.86
3416 3491 4.632688 TCCTAAAAAGTATTTCTTCCGGCG 59.367 41.667 0.00 0.00 37.28 6.46
3442 3517 3.492313 CAAGACGGAAAGCAATTACAGC 58.508 45.455 0.00 0.00 0.00 4.40
3518 3593 7.025963 GCAACAAATAAAAGTGAGATCAGAGG 58.974 38.462 0.00 0.00 0.00 3.69
3709 3784 9.837525 GATATTGATATCAGGAAATGCAAAGAC 57.162 33.333 5.39 0.00 39.13 3.01
3718 3793 4.764823 AGGAAATGCAAAGACGGTGAATTA 59.235 37.500 0.00 0.00 0.00 1.40
3724 3799 3.425625 GCAAAGACGGTGAATTAATCGCA 60.426 43.478 0.00 0.00 40.46 5.10
3817 3892 6.402222 TGAACACACCTAATTTGCTTTTGTT 58.598 32.000 0.00 0.00 0.00 2.83
3818 3893 7.548097 TGAACACACCTAATTTGCTTTTGTTA 58.452 30.769 0.00 0.00 0.00 2.41
3819 3894 8.200792 TGAACACACCTAATTTGCTTTTGTTAT 58.799 29.630 0.00 0.00 0.00 1.89
3820 3895 9.685828 GAACACACCTAATTTGCTTTTGTTATA 57.314 29.630 0.00 0.00 0.00 0.98
3879 3954 7.013178 GGGTCTGTAGGTCTATGTAGAGTTAAC 59.987 44.444 0.00 0.00 32.01 2.01
4069 4144 6.766429 AGTTGTTAGGGAGTAGTTAAAGGTG 58.234 40.000 0.00 0.00 0.00 4.00
4070 4145 5.750352 TGTTAGGGAGTAGTTAAAGGTGG 57.250 43.478 0.00 0.00 0.00 4.61
4071 4146 5.405279 TGTTAGGGAGTAGTTAAAGGTGGA 58.595 41.667 0.00 0.00 0.00 4.02
4072 4147 6.027482 TGTTAGGGAGTAGTTAAAGGTGGAT 58.973 40.000 0.00 0.00 0.00 3.41
4073 4148 7.191210 TGTTAGGGAGTAGTTAAAGGTGGATA 58.809 38.462 0.00 0.00 0.00 2.59
4074 4149 7.679453 TGTTAGGGAGTAGTTAAAGGTGGATAA 59.321 37.037 0.00 0.00 0.00 1.75
4075 4150 6.556974 AGGGAGTAGTTAAAGGTGGATAAC 57.443 41.667 0.00 0.00 33.25 1.89
4092 4167 2.282887 CCCAGGGGTTTTGTCGGG 60.283 66.667 0.00 0.00 0.00 5.14
4093 4168 2.518933 CCAGGGGTTTTGTCGGGT 59.481 61.111 0.00 0.00 0.00 5.28
4094 4169 1.602605 CCAGGGGTTTTGTCGGGTC 60.603 63.158 0.00 0.00 0.00 4.46
4095 4170 1.602605 CAGGGGTTTTGTCGGGTCC 60.603 63.158 0.00 0.00 0.00 4.46
4096 4171 2.282674 GGGGTTTTGTCGGGTCCC 60.283 66.667 0.00 0.00 37.59 4.46
4121 4196 2.503256 GACTGTGTCCACGTTCGAC 58.497 57.895 5.72 5.72 0.00 4.20
4122 4197 0.030369 GACTGTGTCCACGTTCGACT 59.970 55.000 12.46 0.00 0.00 4.18
4123 4198 0.248907 ACTGTGTCCACGTTCGACTG 60.249 55.000 12.46 6.64 0.00 3.51
4124 4199 0.030235 CTGTGTCCACGTTCGACTGA 59.970 55.000 12.46 0.83 0.00 3.41
4125 4200 0.030235 TGTGTCCACGTTCGACTGAG 59.970 55.000 12.46 0.00 0.00 3.35
4126 4201 0.309922 GTGTCCACGTTCGACTGAGA 59.690 55.000 12.46 0.00 0.00 3.27
4127 4202 0.591659 TGTCCACGTTCGACTGAGAG 59.408 55.000 12.46 0.00 0.00 3.20
4306 4381 3.704231 ATGGCGGATCAGTGGGTGC 62.704 63.158 0.00 0.00 0.00 5.01
4385 4460 2.355837 GCGCTGGACGTCACTTCA 60.356 61.111 18.91 4.93 46.11 3.02
4399 4474 6.816136 ACGTCACTTCATGATATGGATAACA 58.184 36.000 0.00 0.00 40.28 2.41
4491 4566 3.244215 ACTTCGATGTCCATGTGTTGTCT 60.244 43.478 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.790962 ACAGGAGCTGCGGCCATG 62.791 66.667 15.55 15.79 39.73 3.66
2 3 4.790962 CACAGGAGCTGCGGCCAT 62.791 66.667 15.55 0.00 39.73 4.40
4 5 4.704833 TTCACAGGAGCTGCGGCC 62.705 66.667 15.55 5.61 39.73 6.13
5 6 2.192608 CTTTTCACAGGAGCTGCGGC 62.193 60.000 10.33 10.33 34.37 6.53
6 7 1.580845 CCTTTTCACAGGAGCTGCGG 61.581 60.000 3.36 3.36 35.71 5.69
7 8 0.603707 TCCTTTTCACAGGAGCTGCG 60.604 55.000 0.00 0.00 38.11 5.18
8 9 1.538950 CTTCCTTTTCACAGGAGCTGC 59.461 52.381 0.00 0.00 44.18 5.25
9 10 2.157738 CCTTCCTTTTCACAGGAGCTG 58.842 52.381 0.00 0.00 44.18 4.24
10 11 2.039613 CTCCTTCCTTTTCACAGGAGCT 59.960 50.000 1.18 0.00 44.66 4.09
11 12 2.431454 CTCCTTCCTTTTCACAGGAGC 58.569 52.381 1.18 0.00 44.66 4.70
13 14 2.639839 CCTCTCCTTCCTTTTCACAGGA 59.360 50.000 0.00 0.00 41.60 3.86
14 15 2.639839 TCCTCTCCTTCCTTTTCACAGG 59.360 50.000 0.00 0.00 34.86 4.00
15 16 3.307339 CCTCCTCTCCTTCCTTTTCACAG 60.307 52.174 0.00 0.00 0.00 3.66
16 17 2.639839 CCTCCTCTCCTTCCTTTTCACA 59.360 50.000 0.00 0.00 0.00 3.58
17 18 2.026729 CCCTCCTCTCCTTCCTTTTCAC 60.027 54.545 0.00 0.00 0.00 3.18
18 19 2.158004 TCCCTCCTCTCCTTCCTTTTCA 60.158 50.000 0.00 0.00 0.00 2.69
19 20 2.552367 TCCCTCCTCTCCTTCCTTTTC 58.448 52.381 0.00 0.00 0.00 2.29
20 21 2.743131 TCCCTCCTCTCCTTCCTTTT 57.257 50.000 0.00 0.00 0.00 2.27
21 22 2.114506 TCTTCCCTCCTCTCCTTCCTTT 59.885 50.000 0.00 0.00 0.00 3.11
22 23 1.725182 TCTTCCCTCCTCTCCTTCCTT 59.275 52.381 0.00 0.00 0.00 3.36
23 24 1.290732 CTCTTCCCTCCTCTCCTTCCT 59.709 57.143 0.00 0.00 0.00 3.36
24 25 1.289530 TCTCTTCCCTCCTCTCCTTCC 59.710 57.143 0.00 0.00 0.00 3.46
25 26 2.838637 TCTCTTCCCTCCTCTCCTTC 57.161 55.000 0.00 0.00 0.00 3.46
26 27 2.292851 CCTTCTCTTCCCTCCTCTCCTT 60.293 54.545 0.00 0.00 0.00 3.36
27 28 1.290732 CCTTCTCTTCCCTCCTCTCCT 59.709 57.143 0.00 0.00 0.00 3.69
28 29 1.289530 TCCTTCTCTTCCCTCCTCTCC 59.710 57.143 0.00 0.00 0.00 3.71
29 30 2.838637 TCCTTCTCTTCCCTCCTCTC 57.161 55.000 0.00 0.00 0.00 3.20
30 31 3.449918 CTTTCCTTCTCTTCCCTCCTCT 58.550 50.000 0.00 0.00 0.00 3.69
31 32 2.503765 CCTTTCCTTCTCTTCCCTCCTC 59.496 54.545 0.00 0.00 0.00 3.71
32 33 2.114506 TCCTTTCCTTCTCTTCCCTCCT 59.885 50.000 0.00 0.00 0.00 3.69
33 34 2.503765 CTCCTTTCCTTCTCTTCCCTCC 59.496 54.545 0.00 0.00 0.00 4.30
34 35 3.445987 TCTCCTTTCCTTCTCTTCCCTC 58.554 50.000 0.00 0.00 0.00 4.30
35 36 3.078305 TCTCTCCTTTCCTTCTCTTCCCT 59.922 47.826 0.00 0.00 0.00 4.20
36 37 3.445987 TCTCTCCTTTCCTTCTCTTCCC 58.554 50.000 0.00 0.00 0.00 3.97
37 38 3.450817 CCTCTCTCCTTTCCTTCTCTTCC 59.549 52.174 0.00 0.00 0.00 3.46
38 39 4.349365 TCCTCTCTCCTTTCCTTCTCTTC 58.651 47.826 0.00 0.00 0.00 2.87
39 40 4.045334 TCTCCTCTCTCCTTTCCTTCTCTT 59.955 45.833 0.00 0.00 0.00 2.85
40 41 3.596046 TCTCCTCTCTCCTTTCCTTCTCT 59.404 47.826 0.00 0.00 0.00 3.10
41 42 3.699538 GTCTCCTCTCTCCTTTCCTTCTC 59.300 52.174 0.00 0.00 0.00 2.87
42 43 3.076785 TGTCTCCTCTCTCCTTTCCTTCT 59.923 47.826 0.00 0.00 0.00 2.85
43 44 3.436243 TGTCTCCTCTCTCCTTTCCTTC 58.564 50.000 0.00 0.00 0.00 3.46
44 45 3.551635 TGTCTCCTCTCTCCTTTCCTT 57.448 47.619 0.00 0.00 0.00 3.36
45 46 3.076785 TCTTGTCTCCTCTCTCCTTTCCT 59.923 47.826 0.00 0.00 0.00 3.36
46 47 3.436243 TCTTGTCTCCTCTCTCCTTTCC 58.564 50.000 0.00 0.00 0.00 3.13
47 48 4.466015 ACATCTTGTCTCCTCTCTCCTTTC 59.534 45.833 0.00 0.00 0.00 2.62
48 49 4.222588 CACATCTTGTCTCCTCTCTCCTTT 59.777 45.833 0.00 0.00 0.00 3.11
49 50 3.768757 CACATCTTGTCTCCTCTCTCCTT 59.231 47.826 0.00 0.00 0.00 3.36
50 51 3.245586 ACACATCTTGTCTCCTCTCTCCT 60.246 47.826 0.00 0.00 29.79 3.69
51 52 3.096092 ACACATCTTGTCTCCTCTCTCC 58.904 50.000 0.00 0.00 29.79 3.71
52 53 3.119173 CCACACATCTTGTCTCCTCTCTC 60.119 52.174 0.00 0.00 35.67 3.20
53 54 2.830923 CCACACATCTTGTCTCCTCTCT 59.169 50.000 0.00 0.00 35.67 3.10
54 55 2.676463 GCCACACATCTTGTCTCCTCTC 60.676 54.545 0.00 0.00 35.67 3.20
55 56 1.277557 GCCACACATCTTGTCTCCTCT 59.722 52.381 0.00 0.00 35.67 3.69
56 57 1.277557 AGCCACACATCTTGTCTCCTC 59.722 52.381 0.00 0.00 35.67 3.71
57 58 1.002888 CAGCCACACATCTTGTCTCCT 59.997 52.381 0.00 0.00 35.67 3.69
58 59 1.002430 TCAGCCACACATCTTGTCTCC 59.998 52.381 0.00 0.00 35.67 3.71
59 60 2.072298 GTCAGCCACACATCTTGTCTC 58.928 52.381 0.00 0.00 35.67 3.36
60 61 1.417517 TGTCAGCCACACATCTTGTCT 59.582 47.619 0.00 0.00 35.67 3.41
61 62 1.802960 CTGTCAGCCACACATCTTGTC 59.197 52.381 0.00 0.00 35.67 3.18
62 63 1.544093 CCTGTCAGCCACACATCTTGT 60.544 52.381 0.00 0.00 39.97 3.16
63 64 1.162698 CCTGTCAGCCACACATCTTG 58.837 55.000 0.00 0.00 0.00 3.02
64 65 0.767375 ACCTGTCAGCCACACATCTT 59.233 50.000 0.00 0.00 0.00 2.40
65 66 0.035881 CACCTGTCAGCCACACATCT 59.964 55.000 0.00 0.00 0.00 2.90
66 67 0.957395 CCACCTGTCAGCCACACATC 60.957 60.000 0.00 0.00 0.00 3.06
67 68 1.073722 CCACCTGTCAGCCACACAT 59.926 57.895 0.00 0.00 0.00 3.21
68 69 2.510411 CCACCTGTCAGCCACACA 59.490 61.111 0.00 0.00 0.00 3.72
69 70 2.281761 CCCACCTGTCAGCCACAC 60.282 66.667 0.00 0.00 0.00 3.82
70 71 2.447572 TCCCACCTGTCAGCCACA 60.448 61.111 0.00 0.00 0.00 4.17
71 72 2.032681 GTCCCACCTGTCAGCCAC 59.967 66.667 0.00 0.00 0.00 5.01
72 73 3.249189 GGTCCCACCTGTCAGCCA 61.249 66.667 0.00 0.00 34.73 4.75
73 74 4.035102 GGGTCCCACCTGTCAGCC 62.035 72.222 1.78 0.00 38.64 4.85
74 75 2.930562 AGGGTCCCACCTGTCAGC 60.931 66.667 11.55 0.00 40.04 4.26
86 87 0.400213 TGTTGATGTGGACCAGGGTC 59.600 55.000 10.03 10.03 43.87 4.46
87 88 0.401738 CTGTTGATGTGGACCAGGGT 59.598 55.000 0.00 0.00 0.00 4.34
88 89 0.322816 CCTGTTGATGTGGACCAGGG 60.323 60.000 0.00 0.00 39.20 4.45
89 90 0.401738 ACCTGTTGATGTGGACCAGG 59.598 55.000 0.00 0.00 46.48 4.45
90 91 1.072173 TGACCTGTTGATGTGGACCAG 59.928 52.381 0.00 0.00 0.00 4.00
91 92 1.135960 TGACCTGTTGATGTGGACCA 58.864 50.000 0.00 0.00 0.00 4.02
92 93 2.270352 TTGACCTGTTGATGTGGACC 57.730 50.000 0.00 0.00 0.00 4.46
93 94 2.948979 TGTTTGACCTGTTGATGTGGAC 59.051 45.455 0.00 0.00 0.00 4.02
94 95 3.289407 TGTTTGACCTGTTGATGTGGA 57.711 42.857 0.00 0.00 0.00 4.02
95 96 4.589216 AATGTTTGACCTGTTGATGTGG 57.411 40.909 0.00 0.00 0.00 4.17
96 97 6.738114 AGTTAATGTTTGACCTGTTGATGTG 58.262 36.000 0.00 0.00 0.00 3.21
97 98 6.959639 AGTTAATGTTTGACCTGTTGATGT 57.040 33.333 0.00 0.00 0.00 3.06
98 99 8.729756 TCATAGTTAATGTTTGACCTGTTGATG 58.270 33.333 0.00 0.00 36.89 3.07
99 100 8.730680 GTCATAGTTAATGTTTGACCTGTTGAT 58.269 33.333 0.00 0.00 36.89 2.57
100 101 7.936847 AGTCATAGTTAATGTTTGACCTGTTGA 59.063 33.333 0.00 0.00 37.91 3.18
101 102 8.099364 AGTCATAGTTAATGTTTGACCTGTTG 57.901 34.615 0.00 0.00 37.91 3.33
102 103 8.567948 CAAGTCATAGTTAATGTTTGACCTGTT 58.432 33.333 0.00 0.00 37.91 3.16
103 104 7.719633 ACAAGTCATAGTTAATGTTTGACCTGT 59.280 33.333 8.52 8.52 37.23 4.00
104 105 8.099364 ACAAGTCATAGTTAATGTTTGACCTG 57.901 34.615 0.00 0.00 37.91 4.00
105 106 8.157476 AGACAAGTCATAGTTAATGTTTGACCT 58.843 33.333 2.72 0.00 37.91 3.85
106 107 8.324163 AGACAAGTCATAGTTAATGTTTGACC 57.676 34.615 2.72 4.57 37.91 4.02
107 108 9.813080 GAAGACAAGTCATAGTTAATGTTTGAC 57.187 33.333 2.72 0.00 36.07 3.18
108 109 8.708742 CGAAGACAAGTCATAGTTAATGTTTGA 58.291 33.333 2.72 0.00 36.07 2.69
109 110 7.478667 GCGAAGACAAGTCATAGTTAATGTTTG 59.521 37.037 2.72 0.00 37.32 2.93
110 111 7.360946 GGCGAAGACAAGTCATAGTTAATGTTT 60.361 37.037 2.72 0.00 33.75 2.83
111 112 6.092259 GGCGAAGACAAGTCATAGTTAATGTT 59.908 38.462 2.72 0.00 33.75 2.71
112 113 5.581085 GGCGAAGACAAGTCATAGTTAATGT 59.419 40.000 2.72 0.00 33.75 2.71
113 114 6.037423 GGCGAAGACAAGTCATAGTTAATG 57.963 41.667 2.72 0.00 33.40 1.90
128 129 3.490890 GCCTGATGTGGCGAAGAC 58.509 61.111 0.00 0.00 43.74 3.01
135 136 1.764723 TGTCTATCCAGCCTGATGTGG 59.235 52.381 0.00 0.00 34.87 4.17
136 137 2.224233 CCTGTCTATCCAGCCTGATGTG 60.224 54.545 0.00 0.00 0.00 3.21
137 138 2.045524 CCTGTCTATCCAGCCTGATGT 58.954 52.381 0.00 0.00 0.00 3.06
138 139 2.036992 GACCTGTCTATCCAGCCTGATG 59.963 54.545 0.00 0.00 0.00 3.07
139 140 2.324541 GACCTGTCTATCCAGCCTGAT 58.675 52.381 0.00 0.00 0.00 2.90
140 141 1.689575 GGACCTGTCTATCCAGCCTGA 60.690 57.143 0.00 0.00 34.87 3.86
141 142 0.755686 GGACCTGTCTATCCAGCCTG 59.244 60.000 0.00 0.00 34.87 4.85
142 143 0.399233 GGGACCTGTCTATCCAGCCT 60.399 60.000 0.00 0.00 36.65 4.58
143 144 0.691078 TGGGACCTGTCTATCCAGCC 60.691 60.000 0.00 0.00 36.65 4.85
144 145 0.466124 GTGGGACCTGTCTATCCAGC 59.534 60.000 0.00 0.00 36.65 4.85
145 146 1.123928 GGTGGGACCTGTCTATCCAG 58.876 60.000 0.00 0.00 36.65 3.86
146 147 0.326238 GGGTGGGACCTGTCTATCCA 60.326 60.000 0.00 0.00 38.64 3.41
147 148 1.400530 CGGGTGGGACCTGTCTATCC 61.401 65.000 0.00 0.00 39.82 2.59
148 149 2.125178 CGGGTGGGACCTGTCTATC 58.875 63.158 0.00 0.00 39.82 2.08
149 150 4.375406 CGGGTGGGACCTGTCTAT 57.625 61.111 0.00 0.00 39.82 1.98
155 156 1.350310 AAAACTGACGGGTGGGACCT 61.350 55.000 0.00 0.00 38.64 3.85
156 157 0.397564 TAAAACTGACGGGTGGGACC 59.602 55.000 0.00 0.00 37.60 4.46
157 158 1.071228 AGTAAAACTGACGGGTGGGAC 59.929 52.381 0.00 0.00 0.00 4.46
158 159 1.426751 AGTAAAACTGACGGGTGGGA 58.573 50.000 0.00 0.00 0.00 4.37
159 160 3.622166 ATAGTAAAACTGACGGGTGGG 57.378 47.619 0.00 0.00 0.00 4.61
160 161 5.809051 GTCTAATAGTAAAACTGACGGGTGG 59.191 44.000 0.00 0.00 0.00 4.61
161 162 5.514204 CGTCTAATAGTAAAACTGACGGGTG 59.486 44.000 0.00 0.00 37.31 4.61
162 163 5.644644 CGTCTAATAGTAAAACTGACGGGT 58.355 41.667 0.00 0.00 37.31 5.28
163 164 4.501921 GCGTCTAATAGTAAAACTGACGGG 59.498 45.833 15.14 0.00 39.65 5.28
164 165 4.203764 CGCGTCTAATAGTAAAACTGACGG 59.796 45.833 15.14 6.08 39.65 4.79
165 166 4.316240 GCGCGTCTAATAGTAAAACTGACG 60.316 45.833 8.43 11.22 41.14 4.35
166 167 4.797349 AGCGCGTCTAATAGTAAAACTGAC 59.203 41.667 8.43 0.00 0.00 3.51
167 168 4.990257 AGCGCGTCTAATAGTAAAACTGA 58.010 39.130 8.43 0.00 0.00 3.41
168 169 4.796830 TGAGCGCGTCTAATAGTAAAACTG 59.203 41.667 8.43 0.00 0.00 3.16
169 170 4.990257 TGAGCGCGTCTAATAGTAAAACT 58.010 39.130 8.43 0.00 0.00 2.66
170 171 5.691508 TTGAGCGCGTCTAATAGTAAAAC 57.308 39.130 8.43 0.00 0.00 2.43
171 172 6.897259 AATTGAGCGCGTCTAATAGTAAAA 57.103 33.333 8.43 0.00 0.00 1.52
172 173 6.291427 CGAAATTGAGCGCGTCTAATAGTAAA 60.291 38.462 8.43 0.00 0.00 2.01
173 174 5.172591 CGAAATTGAGCGCGTCTAATAGTAA 59.827 40.000 8.43 0.00 0.00 2.24
174 175 4.673761 CGAAATTGAGCGCGTCTAATAGTA 59.326 41.667 8.43 0.00 0.00 1.82
175 176 3.486108 CGAAATTGAGCGCGTCTAATAGT 59.514 43.478 8.43 0.00 0.00 2.12
176 177 3.121328 CCGAAATTGAGCGCGTCTAATAG 60.121 47.826 8.43 2.11 0.00 1.73
177 178 2.792674 CCGAAATTGAGCGCGTCTAATA 59.207 45.455 8.43 0.00 0.00 0.98
178 179 1.593006 CCGAAATTGAGCGCGTCTAAT 59.407 47.619 8.43 2.88 0.00 1.73
179 180 0.996462 CCGAAATTGAGCGCGTCTAA 59.004 50.000 8.43 0.17 0.00 2.10
180 181 0.171679 TCCGAAATTGAGCGCGTCTA 59.828 50.000 8.43 1.44 0.00 2.59
181 182 0.460284 ATCCGAAATTGAGCGCGTCT 60.460 50.000 8.43 5.17 0.00 4.18
182 183 0.042967 GATCCGAAATTGAGCGCGTC 60.043 55.000 8.43 4.75 0.00 5.19
183 184 0.739462 TGATCCGAAATTGAGCGCGT 60.739 50.000 8.43 0.00 0.00 6.01
184 185 0.042708 CTGATCCGAAATTGAGCGCG 60.043 55.000 0.00 0.00 0.00 6.86
185 186 1.009829 ACTGATCCGAAATTGAGCGC 58.990 50.000 0.00 0.00 0.00 5.92
186 187 1.267732 GCACTGATCCGAAATTGAGCG 60.268 52.381 0.00 0.00 0.00 5.03
187 188 1.267732 CGCACTGATCCGAAATTGAGC 60.268 52.381 0.00 0.00 0.00 4.26
188 189 2.270923 TCGCACTGATCCGAAATTGAG 58.729 47.619 0.00 0.00 0.00 3.02
189 190 2.378445 TCGCACTGATCCGAAATTGA 57.622 45.000 0.00 0.00 0.00 2.57
190 191 3.680642 AATCGCACTGATCCGAAATTG 57.319 42.857 0.00 0.00 35.84 2.32
191 192 3.440173 ACAAATCGCACTGATCCGAAATT 59.560 39.130 0.00 0.00 35.84 1.82
192 193 3.009723 ACAAATCGCACTGATCCGAAAT 58.990 40.909 0.00 0.00 35.84 2.17
193 194 2.422597 ACAAATCGCACTGATCCGAAA 58.577 42.857 0.00 0.00 35.84 3.46
194 195 2.093306 ACAAATCGCACTGATCCGAA 57.907 45.000 0.00 0.00 35.84 4.30
195 196 2.093306 AACAAATCGCACTGATCCGA 57.907 45.000 0.00 0.00 35.84 4.55
196 197 4.033932 TGAATAACAAATCGCACTGATCCG 59.966 41.667 0.00 0.00 35.84 4.18
197 198 5.065218 AGTGAATAACAAATCGCACTGATCC 59.935 40.000 0.00 0.00 35.84 3.36
198 199 6.111768 AGTGAATAACAAATCGCACTGATC 57.888 37.500 0.00 0.00 35.84 2.92
199 200 6.258727 CCTAGTGAATAACAAATCGCACTGAT 59.741 38.462 0.00 0.00 37.21 2.90
200 201 5.580691 CCTAGTGAATAACAAATCGCACTGA 59.419 40.000 0.00 0.00 37.21 3.41
201 202 5.727791 GCCTAGTGAATAACAAATCGCACTG 60.728 44.000 0.00 0.00 37.21 3.66
202 203 4.332819 GCCTAGTGAATAACAAATCGCACT 59.667 41.667 0.00 0.00 39.61 4.40
203 204 4.588278 GCCTAGTGAATAACAAATCGCAC 58.412 43.478 0.00 0.00 0.00 5.34
204 205 3.308595 CGCCTAGTGAATAACAAATCGCA 59.691 43.478 0.00 0.00 0.00 5.10
205 206 3.844943 GCGCCTAGTGAATAACAAATCGC 60.845 47.826 0.00 0.00 0.00 4.58
206 207 3.308595 TGCGCCTAGTGAATAACAAATCG 59.691 43.478 4.18 0.00 0.00 3.34
207 208 4.570772 TCTGCGCCTAGTGAATAACAAATC 59.429 41.667 4.18 0.00 0.00 2.17
208 209 4.513442 TCTGCGCCTAGTGAATAACAAAT 58.487 39.130 4.18 0.00 0.00 2.32
209 210 3.932822 TCTGCGCCTAGTGAATAACAAA 58.067 40.909 4.18 0.00 0.00 2.83
210 211 3.603158 TCTGCGCCTAGTGAATAACAA 57.397 42.857 4.18 0.00 0.00 2.83
211 212 3.056107 ACTTCTGCGCCTAGTGAATAACA 60.056 43.478 4.18 0.00 0.00 2.41
212 213 3.307242 CACTTCTGCGCCTAGTGAATAAC 59.693 47.826 21.92 0.00 41.33 1.89
213 214 3.521560 CACTTCTGCGCCTAGTGAATAA 58.478 45.455 21.92 0.00 41.33 1.40
214 215 2.159099 CCACTTCTGCGCCTAGTGAATA 60.159 50.000 25.80 0.00 41.33 1.75
215 216 1.406069 CCACTTCTGCGCCTAGTGAAT 60.406 52.381 25.80 5.04 41.33 2.57
216 217 0.037326 CCACTTCTGCGCCTAGTGAA 60.037 55.000 25.80 13.28 41.33 3.18
217 218 1.185618 ACCACTTCTGCGCCTAGTGA 61.186 55.000 25.80 7.43 41.33 3.41
218 219 1.016130 CACCACTTCTGCGCCTAGTG 61.016 60.000 20.37 20.37 39.13 2.74
219 220 1.293498 CACCACTTCTGCGCCTAGT 59.707 57.895 4.18 2.15 0.00 2.57
220 221 1.448540 CCACCACTTCTGCGCCTAG 60.449 63.158 4.18 1.41 0.00 3.02
221 222 1.764571 AACCACCACTTCTGCGCCTA 61.765 55.000 4.18 0.00 0.00 3.93
222 223 2.624674 AAACCACCACTTCTGCGCCT 62.625 55.000 4.18 0.00 0.00 5.52
223 224 1.734388 AAAACCACCACTTCTGCGCC 61.734 55.000 4.18 0.00 0.00 6.53
224 225 0.102300 AAAAACCACCACTTCTGCGC 59.898 50.000 0.00 0.00 0.00 6.09
240 241 8.887717 CACCATCTTTACCAAAAATCACAAAAA 58.112 29.630 0.00 0.00 0.00 1.94
241 242 7.497249 CCACCATCTTTACCAAAAATCACAAAA 59.503 33.333 0.00 0.00 0.00 2.44
242 243 6.989169 CCACCATCTTTACCAAAAATCACAAA 59.011 34.615 0.00 0.00 0.00 2.83
243 244 6.098982 ACCACCATCTTTACCAAAAATCACAA 59.901 34.615 0.00 0.00 0.00 3.33
244 245 5.600484 ACCACCATCTTTACCAAAAATCACA 59.400 36.000 0.00 0.00 0.00 3.58
245 246 6.096673 ACCACCATCTTTACCAAAAATCAC 57.903 37.500 0.00 0.00 0.00 3.06
246 247 6.739331 AACCACCATCTTTACCAAAAATCA 57.261 33.333 0.00 0.00 0.00 2.57
247 248 7.041440 CCAAAACCACCATCTTTACCAAAAATC 60.041 37.037 0.00 0.00 0.00 2.17
248 249 6.770303 CCAAAACCACCATCTTTACCAAAAAT 59.230 34.615 0.00 0.00 0.00 1.82
249 250 6.070194 TCCAAAACCACCATCTTTACCAAAAA 60.070 34.615 0.00 0.00 0.00 1.94
250 251 5.425539 TCCAAAACCACCATCTTTACCAAAA 59.574 36.000 0.00 0.00 0.00 2.44
251 252 4.962995 TCCAAAACCACCATCTTTACCAAA 59.037 37.500 0.00 0.00 0.00 3.28
252 253 4.547671 TCCAAAACCACCATCTTTACCAA 58.452 39.130 0.00 0.00 0.00 3.67
253 254 4.148838 CTCCAAAACCACCATCTTTACCA 58.851 43.478 0.00 0.00 0.00 3.25
254 255 4.149598 ACTCCAAAACCACCATCTTTACC 58.850 43.478 0.00 0.00 0.00 2.85
255 256 6.095021 GGATACTCCAAAACCACCATCTTTAC 59.905 42.308 0.00 0.00 36.28 2.01
256 257 6.184789 GGATACTCCAAAACCACCATCTTTA 58.815 40.000 0.00 0.00 36.28 1.85
257 258 5.016831 GGATACTCCAAAACCACCATCTTT 58.983 41.667 0.00 0.00 36.28 2.52
258 259 4.600062 GGATACTCCAAAACCACCATCTT 58.400 43.478 0.00 0.00 36.28 2.40
259 260 4.236527 GGATACTCCAAAACCACCATCT 57.763 45.455 0.00 0.00 36.28 2.90
268 269 8.710239 CACATTTGTGGCTAGGATACTCCAAAA 61.710 40.741 2.69 0.00 41.84 2.44
269 270 7.302116 CACATTTGTGGCTAGGATACTCCAAA 61.302 42.308 2.69 0.00 41.84 3.28
270 271 5.861423 CACATTTGTGGCTAGGATACTCCAA 60.861 44.000 2.69 0.00 41.84 3.53
271 272 4.384098 CACATTTGTGGCTAGGATACTCCA 60.384 45.833 2.69 0.00 44.41 3.86
272 273 4.130118 CACATTTGTGGCTAGGATACTCC 58.870 47.826 2.69 0.00 44.41 3.85
285 286 2.865551 GCTCAAAACCACCACATTTGTG 59.134 45.455 3.67 3.67 45.23 3.33
286 287 2.499289 TGCTCAAAACCACCACATTTGT 59.501 40.909 0.00 0.00 35.92 2.83
287 288 3.176552 TGCTCAAAACCACCACATTTG 57.823 42.857 0.00 0.00 35.81 2.32
288 289 3.902881 TTGCTCAAAACCACCACATTT 57.097 38.095 0.00 0.00 0.00 2.32
289 290 4.420522 AATTGCTCAAAACCACCACATT 57.579 36.364 0.00 0.00 0.00 2.71
290 291 4.420522 AAATTGCTCAAAACCACCACAT 57.579 36.364 0.00 0.00 0.00 3.21
291 292 3.902881 AAATTGCTCAAAACCACCACA 57.097 38.095 0.00 0.00 0.00 4.17
292 293 4.944048 AGTAAATTGCTCAAAACCACCAC 58.056 39.130 0.00 0.00 0.00 4.16
293 294 4.892934 AGAGTAAATTGCTCAAAACCACCA 59.107 37.500 13.29 0.00 35.55 4.17
294 295 5.453567 AGAGTAAATTGCTCAAAACCACC 57.546 39.130 13.29 0.00 35.55 4.61
295 296 5.461526 GGAGAGTAAATTGCTCAAAACCAC 58.538 41.667 13.29 0.00 35.55 4.16
296 297 4.215399 CGGAGAGTAAATTGCTCAAAACCA 59.785 41.667 13.29 0.00 35.55 3.67
297 298 4.215613 ACGGAGAGTAAATTGCTCAAAACC 59.784 41.667 13.29 9.33 35.55 3.27
298 299 5.179555 AGACGGAGAGTAAATTGCTCAAAAC 59.820 40.000 13.29 2.42 35.55 2.43
299 300 5.179368 CAGACGGAGAGTAAATTGCTCAAAA 59.821 40.000 13.29 0.00 35.55 2.44
300 301 4.690748 CAGACGGAGAGTAAATTGCTCAAA 59.309 41.667 13.29 0.00 35.55 2.69
301 302 4.021456 TCAGACGGAGAGTAAATTGCTCAA 60.021 41.667 13.29 0.00 35.55 3.02
302 303 3.509967 TCAGACGGAGAGTAAATTGCTCA 59.490 43.478 13.29 0.00 35.55 4.26
303 304 4.111375 TCAGACGGAGAGTAAATTGCTC 57.889 45.455 2.77 2.77 0.00 4.26
304 305 4.081420 ACATCAGACGGAGAGTAAATTGCT 60.081 41.667 0.00 0.00 0.00 3.91
305 306 4.033358 CACATCAGACGGAGAGTAAATTGC 59.967 45.833 0.00 0.00 0.00 3.56
306 307 4.568359 CCACATCAGACGGAGAGTAAATTG 59.432 45.833 0.00 0.00 0.00 2.32
307 308 4.759782 CCACATCAGACGGAGAGTAAATT 58.240 43.478 0.00 0.00 0.00 1.82
308 309 3.430929 GCCACATCAGACGGAGAGTAAAT 60.431 47.826 0.00 0.00 0.00 1.40
309 310 2.094182 GCCACATCAGACGGAGAGTAAA 60.094 50.000 0.00 0.00 0.00 2.01
310 311 1.476891 GCCACATCAGACGGAGAGTAA 59.523 52.381 0.00 0.00 0.00 2.24
311 312 1.103803 GCCACATCAGACGGAGAGTA 58.896 55.000 0.00 0.00 0.00 2.59
312 313 0.613292 AGCCACATCAGACGGAGAGT 60.613 55.000 0.00 0.00 0.00 3.24
313 314 0.179116 CAGCCACATCAGACGGAGAG 60.179 60.000 0.00 0.00 0.00 3.20
314 315 1.893062 CAGCCACATCAGACGGAGA 59.107 57.895 0.00 0.00 0.00 3.71
315 316 1.812922 GCAGCCACATCAGACGGAG 60.813 63.158 0.00 0.00 0.00 4.63
316 317 2.265739 GCAGCCACATCAGACGGA 59.734 61.111 0.00 0.00 0.00 4.69
317 318 2.046988 TGCAGCCACATCAGACGG 60.047 61.111 0.00 0.00 0.00 4.79
318 319 0.108662 TAGTGCAGCCACATCAGACG 60.109 55.000 0.00 0.00 44.53 4.18
319 320 1.649664 CTAGTGCAGCCACATCAGAC 58.350 55.000 0.00 0.00 44.53 3.51
320 321 0.107993 GCTAGTGCAGCCACATCAGA 60.108 55.000 0.00 0.00 45.23 3.27
321 322 2.391469 GCTAGTGCAGCCACATCAG 58.609 57.895 0.00 0.00 45.23 2.90
322 323 4.623814 GCTAGTGCAGCCACATCA 57.376 55.556 0.00 0.00 45.23 3.07
333 334 4.476410 TCGCCGTCGCAGCTAGTG 62.476 66.667 0.00 0.00 35.26 2.74
334 335 4.180946 CTCGCCGTCGCAGCTAGT 62.181 66.667 0.00 0.00 35.26 2.57
356 357 4.742201 CTGTCGGGTCGCCTGTGG 62.742 72.222 4.89 0.00 0.00 4.17
357 358 4.742201 CCTGTCGGGTCGCCTGTG 62.742 72.222 4.89 0.00 0.00 3.66
388 389 6.901081 AGCTAACCAAGAGCATAACTTTTT 57.099 33.333 0.00 0.00 42.69 1.94
389 390 6.294731 CCAAGCTAACCAAGAGCATAACTTTT 60.295 38.462 0.00 0.00 42.69 2.27
390 391 5.183904 CCAAGCTAACCAAGAGCATAACTTT 59.816 40.000 0.00 0.00 42.69 2.66
391 392 4.702131 CCAAGCTAACCAAGAGCATAACTT 59.298 41.667 0.00 0.00 42.69 2.66
392 393 4.265073 CCAAGCTAACCAAGAGCATAACT 58.735 43.478 0.00 0.00 42.69 2.24
393 394 3.181496 GCCAAGCTAACCAAGAGCATAAC 60.181 47.826 0.00 0.00 42.69 1.89
394 395 3.016736 GCCAAGCTAACCAAGAGCATAA 58.983 45.455 0.00 0.00 42.69 1.90
395 396 2.643551 GCCAAGCTAACCAAGAGCATA 58.356 47.619 0.00 0.00 42.69 3.14
396 397 1.467920 GCCAAGCTAACCAAGAGCAT 58.532 50.000 0.00 0.00 42.69 3.79
397 398 0.609131 GGCCAAGCTAACCAAGAGCA 60.609 55.000 0.00 0.00 42.69 4.26
398 399 1.315981 GGGCCAAGCTAACCAAGAGC 61.316 60.000 4.39 0.00 40.42 4.09
399 400 1.026718 CGGGCCAAGCTAACCAAGAG 61.027 60.000 4.39 0.00 0.00 2.85
400 401 1.002624 CGGGCCAAGCTAACCAAGA 60.003 57.895 4.39 0.00 0.00 3.02
401 402 2.700773 GCGGGCCAAGCTAACCAAG 61.701 63.158 14.33 0.00 0.00 3.61
402 403 2.675075 GCGGGCCAAGCTAACCAA 60.675 61.111 14.33 0.00 0.00 3.67
403 404 4.733542 GGCGGGCCAAGCTAACCA 62.734 66.667 19.73 0.00 35.81 3.67
405 406 4.733542 TGGGCGGGCCAAGCTAAC 62.734 66.667 22.29 12.04 37.98 2.34
406 407 4.424711 CTGGGCGGGCCAAGCTAA 62.425 66.667 24.45 9.20 37.98 3.09
410 411 2.506957 AAAAACTGGGCGGGCCAAG 61.507 57.895 24.45 19.07 42.85 3.61
411 412 2.444895 AAAAACTGGGCGGGCCAA 60.445 55.556 24.45 8.52 37.98 4.52
444 445 4.722700 CCGAACCCCCAGCCAGTG 62.723 72.222 0.00 0.00 0.00 3.66
445 446 3.857521 TACCGAACCCCCAGCCAGT 62.858 63.158 0.00 0.00 0.00 4.00
446 447 3.006728 TACCGAACCCCCAGCCAG 61.007 66.667 0.00 0.00 0.00 4.85
447 448 3.006728 CTACCGAACCCCCAGCCA 61.007 66.667 0.00 0.00 0.00 4.75
488 489 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
489 490 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
558 559 5.453198 CCAACAAGCCACAATAGTTTTCCTT 60.453 40.000 0.00 0.00 0.00 3.36
576 577 1.444836 CCGACCGCTTAATCCAACAA 58.555 50.000 0.00 0.00 0.00 2.83
615 622 0.913451 AGATGGGACTTGCCTGCTCT 60.913 55.000 0.00 0.00 36.66 4.09
634 641 0.248012 ACAACGGGACATACATGCGA 59.752 50.000 0.00 0.00 0.00 5.10
698 733 4.329462 AGGTGCGCCAAGAAAAATAAAA 57.671 36.364 20.59 0.00 37.19 1.52
699 734 5.652994 ATAGGTGCGCCAAGAAAAATAAA 57.347 34.783 20.59 0.00 37.19 1.40
715 750 2.794910 CTGGCGAATCACGTAATAGGTG 59.205 50.000 6.76 6.76 44.60 4.00
790 826 7.103641 GTGTAGATAAAGGACAGGACATTTCA 58.896 38.462 0.00 0.00 0.00 2.69
795 831 3.119245 GCGTGTAGATAAAGGACAGGACA 60.119 47.826 0.00 0.00 32.12 4.02
796 832 3.445857 GCGTGTAGATAAAGGACAGGAC 58.554 50.000 0.00 0.00 32.12 3.85
963 1026 1.002011 GAGGTGGGAAAGTGGAGGC 60.002 63.158 0.00 0.00 0.00 4.70
1063 1126 0.459237 ATGAGCGACAAGAGCGGAAG 60.459 55.000 0.00 0.00 40.04 3.46
1065 1128 1.139734 GATGAGCGACAAGAGCGGA 59.860 57.895 0.00 0.00 40.04 5.54
1133 1196 4.843331 TGGGGAGGATGAGGGGGC 62.843 72.222 0.00 0.00 0.00 5.80
1888 1956 5.869888 GCAAAGAGAAATTCGGAGTAGAAGA 59.130 40.000 0.00 0.00 33.19 2.87
1962 2030 1.603802 ACACACAGTTGATTTCGCAGG 59.396 47.619 0.00 0.00 0.00 4.85
2219 2290 8.148351 TCACCAATAGTTTCCCTCTATTATTCG 58.852 37.037 0.00 0.00 36.65 3.34
2233 2308 6.183361 ACCTTTGAGTCTCTCACCAATAGTTT 60.183 38.462 0.65 0.00 40.46 2.66
2329 2404 5.238214 GCATGGTAGAGGATAAGCTTTTGAG 59.762 44.000 3.20 0.00 0.00 3.02
2782 2857 4.278310 GAAGCCCCTACATAACATTGGTT 58.722 43.478 0.00 0.00 41.06 3.67
3109 3184 1.656818 CCGCCTTTGCACGATCCATT 61.657 55.000 0.00 0.00 37.32 3.16
3166 3241 4.339247 CACACTGTTTGTTGAAGGATCCTT 59.661 41.667 27.39 27.39 35.67 3.36
3416 3491 0.951558 TTGCTTTCCGTCTTGCCTTC 59.048 50.000 0.00 0.00 0.00 3.46
3518 3593 1.407437 CCCAGGAACCAGATGCAGTAC 60.407 57.143 0.00 0.00 0.00 2.73
3617 3692 6.018507 TGTCGTCTTAAAGCCTGAAAAGTAAC 60.019 38.462 0.00 0.00 0.00 2.50
3709 3784 3.063670 TGCATTGCGATTAATTCACCG 57.936 42.857 3.84 0.00 0.00 4.94
3718 3793 2.935849 TCACTACGAATGCATTGCGATT 59.064 40.909 26.77 14.57 0.00 3.34
3724 3799 6.741992 TTCAAGAATCACTACGAATGCATT 57.258 33.333 12.83 12.83 0.00 3.56
3793 3868 5.971763 ACAAAAGCAAATTAGGTGTGTTCA 58.028 33.333 0.00 0.00 0.00 3.18
3940 4015 3.125829 CGCAAGCTAGAACACATGTCAAT 59.874 43.478 0.00 0.00 0.00 2.57
4064 4139 2.723305 CCCCTGGGTTATCCACCTT 58.277 57.895 12.71 0.00 46.38 3.50
4075 4150 2.282887 CCCGACAAAACCCCTGGG 60.283 66.667 5.50 5.50 42.03 4.45
4076 4151 1.602605 GACCCGACAAAACCCCTGG 60.603 63.158 0.00 0.00 0.00 4.45
4077 4152 1.602605 GGACCCGACAAAACCCCTG 60.603 63.158 0.00 0.00 0.00 4.45
4078 4153 2.837326 GGGACCCGACAAAACCCCT 61.837 63.158 0.00 0.00 35.00 4.79
4079 4154 2.282674 GGGACCCGACAAAACCCC 60.283 66.667 0.00 0.00 35.00 4.95
4095 4170 2.032071 GGACACAGTCCCCAACGG 59.968 66.667 4.85 0.00 46.19 4.44
4103 4178 0.030369 AGTCGAACGTGGACACAGTC 59.970 55.000 18.72 0.00 36.87 3.51
4104 4179 0.248907 CAGTCGAACGTGGACACAGT 60.249 55.000 18.72 0.00 36.87 3.55
4105 4180 0.030235 TCAGTCGAACGTGGACACAG 59.970 55.000 18.72 10.26 36.87 3.66
4106 4181 0.030235 CTCAGTCGAACGTGGACACA 59.970 55.000 18.72 6.72 36.87 3.72
4107 4182 0.309922 TCTCAGTCGAACGTGGACAC 59.690 55.000 18.72 1.69 36.87 3.67
4108 4183 0.591659 CTCTCAGTCGAACGTGGACA 59.408 55.000 18.72 2.42 36.87 4.02
4109 4184 0.109689 CCTCTCAGTCGAACGTGGAC 60.110 60.000 11.04 11.04 34.62 4.02
4110 4185 0.250597 TCCTCTCAGTCGAACGTGGA 60.251 55.000 0.00 0.00 0.00 4.02
4111 4186 0.811915 ATCCTCTCAGTCGAACGTGG 59.188 55.000 0.00 0.00 0.00 4.94
4112 4187 1.468224 CCATCCTCTCAGTCGAACGTG 60.468 57.143 0.00 0.00 0.00 4.49
4113 4188 0.811915 CCATCCTCTCAGTCGAACGT 59.188 55.000 0.00 0.00 0.00 3.99
4114 4189 0.101399 CCCATCCTCTCAGTCGAACG 59.899 60.000 0.00 0.00 0.00 3.95
4115 4190 1.407258 CTCCCATCCTCTCAGTCGAAC 59.593 57.143 0.00 0.00 0.00 3.95
4116 4191 1.686428 CCTCCCATCCTCTCAGTCGAA 60.686 57.143 0.00 0.00 0.00 3.71
4117 4192 0.106469 CCTCCCATCCTCTCAGTCGA 60.106 60.000 0.00 0.00 0.00 4.20
4118 4193 1.743321 GCCTCCCATCCTCTCAGTCG 61.743 65.000 0.00 0.00 0.00 4.18
4119 4194 1.743321 CGCCTCCCATCCTCTCAGTC 61.743 65.000 0.00 0.00 0.00 3.51
4120 4195 1.760086 CGCCTCCCATCCTCTCAGT 60.760 63.158 0.00 0.00 0.00 3.41
4121 4196 1.456518 TCGCCTCCCATCCTCTCAG 60.457 63.158 0.00 0.00 0.00 3.35
4122 4197 1.758514 GTCGCCTCCCATCCTCTCA 60.759 63.158 0.00 0.00 0.00 3.27
4123 4198 2.851071 CGTCGCCTCCCATCCTCTC 61.851 68.421 0.00 0.00 0.00 3.20
4124 4199 2.835431 CGTCGCCTCCCATCCTCT 60.835 66.667 0.00 0.00 0.00 3.69
4125 4200 3.140225 GACGTCGCCTCCCATCCTC 62.140 68.421 0.00 0.00 0.00 3.71
4126 4201 3.148279 GACGTCGCCTCCCATCCT 61.148 66.667 0.00 0.00 0.00 3.24
4127 4202 4.222847 GGACGTCGCCTCCCATCC 62.223 72.222 9.92 0.00 0.00 3.51
4399 4474 1.895020 TAGTCGCCGGCAAGGATGTT 61.895 55.000 28.98 8.24 45.00 2.71
4491 4566 2.023673 CTGTGAACCTCCTGCAAAACA 58.976 47.619 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.