Multiple sequence alignment - TraesCS7A01G307000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G307000 chr7A 100.000 3071 0 0 768 3838 433417400 433420470 0.000000e+00 5672.0
1 TraesCS7A01G307000 chr7A 100.000 547 0 0 1 547 433416633 433417179 0.000000e+00 1011.0
2 TraesCS7A01G307000 chr7A 95.312 64 3 0 3106 3169 433419676 433419739 6.780000e-18 102.0
3 TraesCS7A01G307000 chr7A 95.312 64 3 0 3044 3107 433419738 433419801 6.780000e-18 102.0
4 TraesCS7A01G307000 chr7D 95.398 2325 70 19 788 3088 385518742 385521053 0.000000e+00 3666.0
5 TraesCS7A01G307000 chr7D 81.351 681 110 15 3162 3834 220026935 220027606 4.360000e-149 538.0
6 TraesCS7A01G307000 chr7D 93.617 47 3 0 3106 3152 385521009 385521055 1.910000e-08 71.3
7 TraesCS7A01G307000 chr7D 95.122 41 1 1 1708 1747 604875052 604875012 3.200000e-06 63.9
8 TraesCS7A01G307000 chr7D 95.122 41 1 1 1708 1747 605145155 605145195 3.200000e-06 63.9
9 TraesCS7A01G307000 chr7D 90.909 44 3 1 1705 1747 626947623 626947580 1.490000e-04 58.4
10 TraesCS7A01G307000 chr7B 93.801 1355 61 10 1746 3088 379838273 379839616 0.000000e+00 2015.0
11 TraesCS7A01G307000 chr7B 90.721 916 51 20 774 1679 379837364 379838255 0.000000e+00 1190.0
12 TraesCS7A01G307000 chr7B 88.525 61 5 2 1689 1748 434839313 434839254 5.320000e-09 73.1
13 TraesCS7A01G307000 chr6D 86.589 686 80 9 3157 3838 168063856 168064533 0.000000e+00 747.0
14 TraesCS7A01G307000 chr6D 97.143 35 1 0 1702 1736 17499917 17499951 4.140000e-05 60.2
15 TraesCS7A01G307000 chr1B 85.029 688 92 10 3157 3838 518544225 518544907 0.000000e+00 689.0
16 TraesCS7A01G307000 chr1B 93.478 46 2 1 1703 1747 160325263 160325218 2.470000e-07 67.6
17 TraesCS7A01G307000 chr1B 90.196 51 3 2 1703 1752 349353725 349353774 8.900000e-07 65.8
18 TraesCS7A01G307000 chr4B 83.386 632 95 9 3210 3838 542130256 542129632 9.250000e-161 577.0
19 TraesCS7A01G307000 chr4B 81.223 687 107 20 3162 3836 454460770 454460094 5.640000e-148 534.0
20 TraesCS7A01G307000 chr4B 94.000 50 1 2 1703 1751 71586874 71586826 1.480000e-09 75.0
21 TraesCS7A01G307000 chr1D 81.341 686 110 15 3162 3838 221234851 221234175 3.370000e-150 542.0
22 TraesCS7A01G307000 chr1D 93.750 48 2 1 1701 1747 316618886 316618933 1.910000e-08 71.3
23 TraesCS7A01G307000 chr1D 93.478 46 2 1 1703 1747 316618876 316618831 2.470000e-07 67.6
24 TraesCS7A01G307000 chr3D 80.403 694 114 21 3157 3836 297234153 297233468 3.420000e-140 508.0
25 TraesCS7A01G307000 chr3D 95.652 46 1 1 1703 1747 473457432 473457477 5.320000e-09 73.1
26 TraesCS7A01G307000 chr2A 80.234 683 114 18 3167 3838 242968337 242967665 9.580000e-136 494.0
27 TraesCS7A01G307000 chr2A 93.878 49 2 1 1703 1750 559118455 559118407 5.320000e-09 73.1
28 TraesCS7A01G307000 chr1A 79.971 689 120 16 3157 3838 444469675 444470352 3.450000e-135 492.0
29 TraesCS7A01G307000 chr1A 95.652 46 1 1 1703 1747 106228120 106228075 5.320000e-09 73.1
30 TraesCS7A01G307000 chr2B 95.652 46 1 1 1703 1747 216462853 216462808 5.320000e-09 73.1
31 TraesCS7A01G307000 chr6B 92.000 50 3 1 1699 1747 622737743 622737694 6.880000e-08 69.4
32 TraesCS7A01G307000 chrUn 95.122 41 1 1 1708 1747 477988108 477988068 3.200000e-06 63.9
33 TraesCS7A01G307000 chrUn 100.000 32 0 0 1704 1735 112603638 112603607 4.140000e-05 60.2
34 TraesCS7A01G307000 chr4D 95.000 40 2 0 1704 1743 314075319 314075280 3.200000e-06 63.9
35 TraesCS7A01G307000 chr5D 91.304 46 3 1 1703 1747 27011953 27011908 1.150000e-05 62.1
36 TraesCS7A01G307000 chr2D 97.143 35 1 0 1703 1737 585736568 585736602 4.140000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G307000 chr7A 433416633 433420470 3837 False 1721.75 5672 97.6560 1 3838 4 chr7A.!!$F1 3837
1 TraesCS7A01G307000 chr7D 385518742 385521055 2313 False 1868.65 3666 94.5075 788 3152 2 chr7D.!!$F3 2364
2 TraesCS7A01G307000 chr7D 220026935 220027606 671 False 538.00 538 81.3510 3162 3834 1 chr7D.!!$F1 672
3 TraesCS7A01G307000 chr7B 379837364 379839616 2252 False 1602.50 2015 92.2610 774 3088 2 chr7B.!!$F1 2314
4 TraesCS7A01G307000 chr6D 168063856 168064533 677 False 747.00 747 86.5890 3157 3838 1 chr6D.!!$F2 681
5 TraesCS7A01G307000 chr1B 518544225 518544907 682 False 689.00 689 85.0290 3157 3838 1 chr1B.!!$F2 681
6 TraesCS7A01G307000 chr4B 542129632 542130256 624 True 577.00 577 83.3860 3210 3838 1 chr4B.!!$R3 628
7 TraesCS7A01G307000 chr4B 454460094 454460770 676 True 534.00 534 81.2230 3162 3836 1 chr4B.!!$R2 674
8 TraesCS7A01G307000 chr1D 221234175 221234851 676 True 542.00 542 81.3410 3162 3838 1 chr1D.!!$R1 676
9 TraesCS7A01G307000 chr3D 297233468 297234153 685 True 508.00 508 80.4030 3157 3836 1 chr3D.!!$R1 679
10 TraesCS7A01G307000 chr2A 242967665 242968337 672 True 494.00 494 80.2340 3167 3838 1 chr2A.!!$R1 671
11 TraesCS7A01G307000 chr1A 444469675 444470352 677 False 492.00 492 79.9710 3157 3838 1 chr1A.!!$F1 681

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
530 531 0.038310 AAAGGAGCTACTTGGGCCAC 59.962 55.0 13.23 0.00 0.00 5.01 F
935 947 0.108774 GATAGCAACCTACCCAGCCC 59.891 60.0 0.00 0.00 0.00 5.19 F
2089 2120 0.179034 TTGGTGCACCATTTTTGGCC 60.179 50.0 37.97 7.62 46.97 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1415 1431 0.106819 CATCAGCAGGGAGAAAGGGG 60.107 60.000 0.00 0.00 0.00 4.79 R
2542 2578 2.216898 AGCACTCTCTGTTGTTTCAGC 58.783 47.619 0.00 0.00 35.63 4.26 R
3514 3566 0.034896 GGAACCCTGAAGCTTCGTGA 59.965 55.000 21.11 3.38 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 8.634335 TTCATCTATTCAGAAAATGTTCACCA 57.366 30.769 0.00 0.00 36.09 4.17
41 42 8.634335 TCATCTATTCAGAAAATGTTCACCAA 57.366 30.769 0.00 0.00 36.09 3.67
42 43 9.246670 TCATCTATTCAGAAAATGTTCACCAAT 57.753 29.630 0.00 0.00 36.09 3.16
43 44 9.865321 CATCTATTCAGAAAATGTTCACCAATT 57.135 29.630 0.00 0.00 36.09 2.32
45 46 9.076781 TCTATTCAGAAAATGTTCACCAATTCA 57.923 29.630 0.00 0.00 36.09 2.57
46 47 9.350357 CTATTCAGAAAATGTTCACCAATTCAG 57.650 33.333 0.00 0.00 36.09 3.02
47 48 6.957920 TCAGAAAATGTTCACCAATTCAGA 57.042 33.333 0.00 0.00 36.09 3.27
48 49 7.345422 TCAGAAAATGTTCACCAATTCAGAA 57.655 32.000 0.00 0.00 36.09 3.02
49 50 7.780064 TCAGAAAATGTTCACCAATTCAGAAA 58.220 30.769 0.00 0.00 36.09 2.52
50 51 8.256605 TCAGAAAATGTTCACCAATTCAGAAAA 58.743 29.630 0.00 0.00 36.09 2.29
51 52 8.881743 CAGAAAATGTTCACCAATTCAGAAAAA 58.118 29.630 0.00 0.00 36.09 1.94
52 53 9.617523 AGAAAATGTTCACCAATTCAGAAAAAT 57.382 25.926 0.00 0.00 36.09 1.82
53 54 9.654417 GAAAATGTTCACCAATTCAGAAAAATG 57.346 29.630 0.00 0.00 33.61 2.32
54 55 8.735692 AAATGTTCACCAATTCAGAAAAATGT 57.264 26.923 0.00 0.00 0.00 2.71
55 56 8.735692 AATGTTCACCAATTCAGAAAAATGTT 57.264 26.923 0.00 0.00 0.00 2.71
56 57 7.769272 TGTTCACCAATTCAGAAAAATGTTC 57.231 32.000 0.00 0.00 0.00 3.18
57 58 7.326454 TGTTCACCAATTCAGAAAAATGTTCA 58.674 30.769 0.00 0.00 0.00 3.18
58 59 7.277539 TGTTCACCAATTCAGAAAAATGTTCAC 59.722 33.333 0.00 0.00 0.00 3.18
59 60 5.976534 TCACCAATTCAGAAAAATGTTCACG 59.023 36.000 0.00 0.00 0.00 4.35
60 61 5.976534 CACCAATTCAGAAAAATGTTCACGA 59.023 36.000 0.00 0.00 0.00 4.35
61 62 6.142798 CACCAATTCAGAAAAATGTTCACGAG 59.857 38.462 0.00 0.00 0.00 4.18
62 63 6.183360 ACCAATTCAGAAAAATGTTCACGAGT 60.183 34.615 0.00 0.00 0.00 4.18
63 64 6.697019 CCAATTCAGAAAAATGTTCACGAGTT 59.303 34.615 0.00 0.00 0.00 3.01
64 65 7.222611 CCAATTCAGAAAAATGTTCACGAGTTT 59.777 33.333 0.00 0.00 0.00 2.66
65 66 9.232082 CAATTCAGAAAAATGTTCACGAGTTTA 57.768 29.630 0.00 0.00 0.00 2.01
66 67 9.796120 AATTCAGAAAAATGTTCACGAGTTTAA 57.204 25.926 0.00 0.00 0.00 1.52
67 68 9.796120 ATTCAGAAAAATGTTCACGAGTTTAAA 57.204 25.926 0.00 0.00 0.00 1.52
68 69 9.627395 TTCAGAAAAATGTTCACGAGTTTAAAA 57.373 25.926 0.00 0.00 0.00 1.52
69 70 9.627395 TCAGAAAAATGTTCACGAGTTTAAAAA 57.373 25.926 0.00 0.00 0.00 1.94
176 177 8.735692 ATGTTGGATAATTTAAAAATGGCAGG 57.264 30.769 0.00 0.00 0.00 4.85
177 178 7.108847 TGTTGGATAATTTAAAAATGGCAGGG 58.891 34.615 0.00 0.00 0.00 4.45
178 179 7.038017 TGTTGGATAATTTAAAAATGGCAGGGA 60.038 33.333 0.00 0.00 0.00 4.20
179 180 7.688918 TGGATAATTTAAAAATGGCAGGGAT 57.311 32.000 0.00 0.00 0.00 3.85
180 181 8.100135 TGGATAATTTAAAAATGGCAGGGATT 57.900 30.769 0.00 0.00 0.00 3.01
181 182 8.555729 TGGATAATTTAAAAATGGCAGGGATTT 58.444 29.630 0.00 0.00 0.00 2.17
182 183 9.407380 GGATAATTTAAAAATGGCAGGGATTTT 57.593 29.630 0.00 1.07 35.06 1.82
241 242 9.430623 TGTAGACAGAAATTATTCACGATTTCA 57.569 29.630 10.37 0.00 42.12 2.69
288 289 8.614994 AAAAGTTCACGAGTTTGTAAAAGATG 57.385 30.769 0.00 0.00 31.32 2.90
289 290 6.920569 AGTTCACGAGTTTGTAAAAGATGT 57.079 33.333 0.00 0.00 0.00 3.06
290 291 7.316544 AGTTCACGAGTTTGTAAAAGATGTT 57.683 32.000 0.00 0.00 0.00 2.71
291 292 7.407337 AGTTCACGAGTTTGTAAAAGATGTTC 58.593 34.615 0.00 0.00 0.00 3.18
292 293 6.912203 TCACGAGTTTGTAAAAGATGTTCA 57.088 33.333 0.00 0.00 0.00 3.18
293 294 6.711579 TCACGAGTTTGTAAAAGATGTTCAC 58.288 36.000 0.00 0.00 0.00 3.18
294 295 6.314152 TCACGAGTTTGTAAAAGATGTTCACA 59.686 34.615 0.00 0.00 0.00 3.58
295 296 6.964370 CACGAGTTTGTAAAAGATGTTCACAA 59.036 34.615 0.00 0.25 0.00 3.33
296 297 7.483375 CACGAGTTTGTAAAAGATGTTCACAAA 59.517 33.333 9.89 9.89 36.91 2.83
297 298 8.188139 ACGAGTTTGTAAAAGATGTTCACAAAT 58.812 29.630 14.54 7.50 40.18 2.32
298 299 8.471457 CGAGTTTGTAAAAGATGTTCACAAATG 58.529 33.333 14.54 7.74 40.18 2.32
299 300 8.130307 AGTTTGTAAAAGATGTTCACAAATGC 57.870 30.769 14.54 6.86 40.18 3.56
300 301 7.763528 AGTTTGTAAAAGATGTTCACAAATGCA 59.236 29.630 14.54 0.00 40.18 3.96
301 302 7.697352 TTGTAAAAGATGTTCACAAATGCAG 57.303 32.000 0.00 0.00 0.00 4.41
302 303 7.036996 TGTAAAAGATGTTCACAAATGCAGA 57.963 32.000 0.00 0.00 0.00 4.26
303 304 7.487484 TGTAAAAGATGTTCACAAATGCAGAA 58.513 30.769 0.00 0.00 0.00 3.02
304 305 7.978414 TGTAAAAGATGTTCACAAATGCAGAAA 59.022 29.630 0.00 0.00 0.00 2.52
305 306 7.473027 AAAAGATGTTCACAAATGCAGAAAG 57.527 32.000 0.00 0.00 0.00 2.62
306 307 6.395426 AAGATGTTCACAAATGCAGAAAGA 57.605 33.333 0.00 0.00 0.00 2.52
307 308 6.010294 AGATGTTCACAAATGCAGAAAGAG 57.990 37.500 0.00 0.00 0.00 2.85
308 309 5.766670 AGATGTTCACAAATGCAGAAAGAGA 59.233 36.000 0.00 0.00 0.00 3.10
309 310 5.833406 TGTTCACAAATGCAGAAAGAGAA 57.167 34.783 0.00 0.00 0.00 2.87
310 311 5.824429 TGTTCACAAATGCAGAAAGAGAAG 58.176 37.500 0.00 0.00 0.00 2.85
311 312 5.218139 GTTCACAAATGCAGAAAGAGAAGG 58.782 41.667 0.00 0.00 0.00 3.46
312 313 4.717877 TCACAAATGCAGAAAGAGAAGGA 58.282 39.130 0.00 0.00 0.00 3.36
313 314 5.132502 TCACAAATGCAGAAAGAGAAGGAA 58.867 37.500 0.00 0.00 0.00 3.36
314 315 5.593909 TCACAAATGCAGAAAGAGAAGGAAA 59.406 36.000 0.00 0.00 0.00 3.13
315 316 6.096705 TCACAAATGCAGAAAGAGAAGGAAAA 59.903 34.615 0.00 0.00 0.00 2.29
316 317 6.757947 CACAAATGCAGAAAGAGAAGGAAAAA 59.242 34.615 0.00 0.00 0.00 1.94
317 318 6.982724 ACAAATGCAGAAAGAGAAGGAAAAAG 59.017 34.615 0.00 0.00 0.00 2.27
318 319 6.966534 AATGCAGAAAGAGAAGGAAAAAGA 57.033 33.333 0.00 0.00 0.00 2.52
319 320 6.966534 ATGCAGAAAGAGAAGGAAAAAGAA 57.033 33.333 0.00 0.00 0.00 2.52
320 321 6.773976 TGCAGAAAGAGAAGGAAAAAGAAA 57.226 33.333 0.00 0.00 0.00 2.52
321 322 6.799512 TGCAGAAAGAGAAGGAAAAAGAAAG 58.200 36.000 0.00 0.00 0.00 2.62
322 323 6.603201 TGCAGAAAGAGAAGGAAAAAGAAAGA 59.397 34.615 0.00 0.00 0.00 2.52
323 324 7.122650 TGCAGAAAGAGAAGGAAAAAGAAAGAA 59.877 33.333 0.00 0.00 0.00 2.52
324 325 7.976175 GCAGAAAGAGAAGGAAAAAGAAAGAAA 59.024 33.333 0.00 0.00 0.00 2.52
325 326 9.513727 CAGAAAGAGAAGGAAAAAGAAAGAAAG 57.486 33.333 0.00 0.00 0.00 2.62
326 327 9.467796 AGAAAGAGAAGGAAAAAGAAAGAAAGA 57.532 29.630 0.00 0.00 0.00 2.52
350 351 9.958180 AGAAAATGAAAAAGAAAAGGAAAAGGA 57.042 25.926 0.00 0.00 0.00 3.36
440 441 9.657419 AAAGGAAATAATGTAAATGAAAGGCAG 57.343 29.630 0.00 0.00 0.00 4.85
441 442 8.593945 AGGAAATAATGTAAATGAAAGGCAGA 57.406 30.769 0.00 0.00 0.00 4.26
442 443 9.034800 AGGAAATAATGTAAATGAAAGGCAGAA 57.965 29.630 0.00 0.00 0.00 3.02
443 444 9.651913 GGAAATAATGTAAATGAAAGGCAGAAA 57.348 29.630 0.00 0.00 0.00 2.52
449 450 8.767478 ATGTAAATGAAAGGCAGAAAAAGATG 57.233 30.769 0.00 0.00 0.00 2.90
450 451 7.950512 TGTAAATGAAAGGCAGAAAAAGATGA 58.049 30.769 0.00 0.00 0.00 2.92
451 452 8.420222 TGTAAATGAAAGGCAGAAAAAGATGAA 58.580 29.630 0.00 0.00 0.00 2.57
452 453 9.260002 GTAAATGAAAGGCAGAAAAAGATGAAA 57.740 29.630 0.00 0.00 0.00 2.69
453 454 7.958053 AATGAAAGGCAGAAAAAGATGAAAG 57.042 32.000 0.00 0.00 0.00 2.62
454 455 5.846203 TGAAAGGCAGAAAAAGATGAAAGG 58.154 37.500 0.00 0.00 0.00 3.11
455 456 5.598005 TGAAAGGCAGAAAAAGATGAAAGGA 59.402 36.000 0.00 0.00 0.00 3.36
456 457 6.098124 TGAAAGGCAGAAAAAGATGAAAGGAA 59.902 34.615 0.00 0.00 0.00 3.36
457 458 6.484364 AAGGCAGAAAAAGATGAAAGGAAA 57.516 33.333 0.00 0.00 0.00 3.13
458 459 6.484364 AGGCAGAAAAAGATGAAAGGAAAA 57.516 33.333 0.00 0.00 0.00 2.29
459 460 6.888105 AGGCAGAAAAAGATGAAAGGAAAAA 58.112 32.000 0.00 0.00 0.00 1.94
460 461 7.512130 AGGCAGAAAAAGATGAAAGGAAAAAT 58.488 30.769 0.00 0.00 0.00 1.82
461 462 8.650490 AGGCAGAAAAAGATGAAAGGAAAAATA 58.350 29.630 0.00 0.00 0.00 1.40
462 463 9.271828 GGCAGAAAAAGATGAAAGGAAAAATAA 57.728 29.630 0.00 0.00 0.00 1.40
487 488 6.765355 ATAAAATAACCTAGTCTGGGGAGG 57.235 41.667 7.24 0.00 36.36 4.30
488 489 3.797671 AATAACCTAGTCTGGGGAGGT 57.202 47.619 7.24 0.00 45.75 3.85
492 493 3.572661 ACCTAGTCTGGGGAGGTTTAA 57.427 47.619 7.24 0.00 40.85 1.52
493 494 3.451890 ACCTAGTCTGGGGAGGTTTAAG 58.548 50.000 7.24 0.00 40.85 1.85
494 495 3.078612 ACCTAGTCTGGGGAGGTTTAAGA 59.921 47.826 7.24 0.00 40.85 2.10
495 496 4.101856 CCTAGTCTGGGGAGGTTTAAGAA 58.898 47.826 0.00 0.00 0.00 2.52
496 497 4.081031 CCTAGTCTGGGGAGGTTTAAGAAC 60.081 50.000 0.00 0.00 34.96 3.01
513 514 9.589111 GTTTAAGAACCTTTGTCATACCAAAAA 57.411 29.630 0.00 0.00 34.15 1.94
514 515 9.810545 TTTAAGAACCTTTGTCATACCAAAAAG 57.189 29.630 0.00 0.00 34.15 2.27
519 520 5.712152 CTTTGTCATACCAAAAAGGAGCT 57.288 39.130 0.00 0.00 41.22 4.09
520 521 6.817765 CTTTGTCATACCAAAAAGGAGCTA 57.182 37.500 0.00 0.00 41.22 3.32
521 522 6.569179 TTTGTCATACCAAAAAGGAGCTAC 57.431 37.500 0.00 0.00 41.22 3.58
522 523 5.499004 TGTCATACCAAAAAGGAGCTACT 57.501 39.130 0.00 0.00 41.22 2.57
523 524 5.876357 TGTCATACCAAAAAGGAGCTACTT 58.124 37.500 4.98 4.98 41.22 2.24
524 525 5.705441 TGTCATACCAAAAAGGAGCTACTTG 59.295 40.000 13.23 1.59 41.22 3.16
525 526 5.123979 GTCATACCAAAAAGGAGCTACTTGG 59.876 44.000 13.23 13.04 41.91 3.61
526 527 2.876581 ACCAAAAAGGAGCTACTTGGG 58.123 47.619 13.23 16.40 40.74 4.12
527 528 1.546029 CCAAAAAGGAGCTACTTGGGC 59.454 52.381 13.23 0.00 41.22 5.36
528 529 1.546029 CAAAAAGGAGCTACTTGGGCC 59.454 52.381 13.23 0.00 0.00 5.80
529 530 0.777446 AAAAGGAGCTACTTGGGCCA 59.223 50.000 13.23 0.00 0.00 5.36
530 531 0.038310 AAAGGAGCTACTTGGGCCAC 59.962 55.000 13.23 0.00 0.00 5.01
531 532 1.853250 AAGGAGCTACTTGGGCCACC 61.853 60.000 11.41 1.40 37.24 4.61
541 542 2.922162 TGGGCCACCAAAAATGTGT 58.078 47.368 0.00 0.00 45.87 3.72
542 543 0.467384 TGGGCCACCAAAAATGTGTG 59.533 50.000 0.00 0.00 45.87 3.82
543 544 0.884259 GGGCCACCAAAAATGTGTGC 60.884 55.000 4.39 0.00 36.50 4.57
544 545 0.179062 GGCCACCAAAAATGTGTGCA 60.179 50.000 0.00 0.00 33.99 4.57
545 546 1.542987 GGCCACCAAAAATGTGTGCAT 60.543 47.619 0.00 0.00 36.80 3.96
546 547 2.289320 GGCCACCAAAAATGTGTGCATA 60.289 45.455 0.00 0.00 34.39 3.14
807 808 0.166814 GAGAGTGTGTCCAAATGCGC 59.833 55.000 0.00 0.00 0.00 6.09
808 809 1.154413 GAGTGTGTCCAAATGCGCG 60.154 57.895 0.00 0.00 0.00 6.86
873 884 3.963129 AGCCCATTTTATCTCAACCGAA 58.037 40.909 0.00 0.00 0.00 4.30
874 885 4.536765 AGCCCATTTTATCTCAACCGAAT 58.463 39.130 0.00 0.00 0.00 3.34
875 886 5.690865 AGCCCATTTTATCTCAACCGAATA 58.309 37.500 0.00 0.00 0.00 1.75
876 887 5.765182 AGCCCATTTTATCTCAACCGAATAG 59.235 40.000 0.00 0.00 0.00 1.73
877 888 5.562890 GCCCATTTTATCTCAACCGAATAGC 60.563 44.000 0.00 0.00 0.00 2.97
878 889 5.530915 CCCATTTTATCTCAACCGAATAGCA 59.469 40.000 0.00 0.00 0.00 3.49
879 890 6.039270 CCCATTTTATCTCAACCGAATAGCAA 59.961 38.462 0.00 0.00 0.00 3.91
880 891 7.134815 CCATTTTATCTCAACCGAATAGCAAG 58.865 38.462 0.00 0.00 0.00 4.01
881 892 7.012327 CCATTTTATCTCAACCGAATAGCAAGA 59.988 37.037 0.00 0.00 0.00 3.02
935 947 0.108774 GATAGCAACCTACCCAGCCC 59.891 60.000 0.00 0.00 0.00 5.19
936 948 0.623324 ATAGCAACCTACCCAGCCCA 60.623 55.000 0.00 0.00 0.00 5.36
937 949 0.623324 TAGCAACCTACCCAGCCCAT 60.623 55.000 0.00 0.00 0.00 4.00
1033 1046 0.537371 CCGCAAAAACCTCACTCCCT 60.537 55.000 0.00 0.00 0.00 4.20
1139 1155 3.403558 GCCCTCCGCTTCCTCCTT 61.404 66.667 0.00 0.00 0.00 3.36
1148 1164 1.218316 CTTCCTCCTTAGCCGCGTT 59.782 57.895 4.92 0.00 0.00 4.84
1414 1430 0.725117 CGGCAGGTAAAACCGTGATC 59.275 55.000 0.00 0.00 44.90 2.92
1415 1431 1.092348 GGCAGGTAAAACCGTGATCC 58.908 55.000 0.00 0.00 44.90 3.36
1462 1478 4.179926 TGTCTGTATGTCTGTTGAGAGC 57.820 45.455 0.00 0.00 0.00 4.09
1511 1530 6.961554 GTGTAGAGAAAATGCTACCAATTTCG 59.038 38.462 0.00 0.00 42.79 3.46
1590 1609 4.431809 CTTGTAGTCCTCTCATGCTTCTG 58.568 47.826 0.00 0.00 0.00 3.02
1591 1610 3.701664 TGTAGTCCTCTCATGCTTCTGA 58.298 45.455 0.00 0.00 0.00 3.27
1642 1661 3.973657 ACGCAATAATCGGTAGGTACTG 58.026 45.455 0.00 0.00 41.52 2.74
1702 1732 8.207350 TGGCTATTTATTACTTCCTCTGCTAT 57.793 34.615 0.00 0.00 0.00 2.97
1752 1782 2.041350 TCCGGATGAGGGAGTAGATACC 59.959 54.545 0.00 0.00 0.00 2.73
1761 1791 3.117054 AGGGAGTAGATACCTGGAACCTC 60.117 52.174 0.00 0.00 42.72 3.85
1762 1792 3.117054 GGGAGTAGATACCTGGAACCTCT 60.117 52.174 0.00 0.00 0.00 3.69
1765 1795 5.425862 GGAGTAGATACCTGGAACCTCTTTT 59.574 44.000 0.00 0.00 0.00 2.27
1844 1874 4.382685 GCATGAGTGTAGTTTAGCAGGGTA 60.383 45.833 0.00 0.00 0.00 3.69
2088 2119 1.673168 TTTGGTGCACCATTTTTGGC 58.327 45.000 37.97 8.24 46.97 4.52
2089 2120 0.179034 TTGGTGCACCATTTTTGGCC 60.179 50.000 37.97 7.62 46.97 5.36
2094 2125 1.767681 TGCACCATTTTTGGCCTTTCT 59.232 42.857 3.32 0.00 0.00 2.52
2096 2127 2.549329 GCACCATTTTTGGCCTTTCTTG 59.451 45.455 3.32 0.00 0.00 3.02
2097 2128 3.807553 CACCATTTTTGGCCTTTCTTGT 58.192 40.909 3.32 0.00 0.00 3.16
2100 2131 5.819901 CACCATTTTTGGCCTTTCTTGTTTA 59.180 36.000 3.32 0.00 0.00 2.01
2103 2134 7.148154 ACCATTTTTGGCCTTTCTTGTTTAAAC 60.148 33.333 11.54 11.54 0.00 2.01
2113 2144 8.141909 GCCTTTCTTGTTTAAACCTGTTCTTAT 58.858 33.333 15.59 0.00 0.00 1.73
2165 2196 2.173569 GGTGCTCCCTGATTCCTACATT 59.826 50.000 0.00 0.00 0.00 2.71
2168 2199 3.118261 TGCTCCCTGATTCCTACATTGAC 60.118 47.826 0.00 0.00 0.00 3.18
2229 2260 3.659786 TCTGTAGCTGCACGTTTATGTT 58.340 40.909 0.00 0.00 0.00 2.71
2237 2268 3.644823 TGCACGTTTATGTTCTTCTCGA 58.355 40.909 0.00 0.00 0.00 4.04
2253 2284 6.773080 TCTTCTCGAGTCTTAATCACTAACG 58.227 40.000 13.13 0.00 0.00 3.18
2474 2505 5.638133 AGGTAGAATTGCATGCTAATCCAT 58.362 37.500 20.33 1.86 0.00 3.41
2529 2565 0.396974 TCCTTGCCAGTTTTGCAGGT 60.397 50.000 0.00 0.00 40.35 4.00
2542 2578 1.155889 TGCAGGTGTTTACTCGCATG 58.844 50.000 0.00 0.00 31.94 4.06
2575 2611 6.887013 ACAGAGAGTGCTCAATTCTATCATT 58.113 36.000 1.82 0.00 43.81 2.57
2694 2730 3.321950 TGGATTTGGGTTTTTGGACCAT 58.678 40.909 0.00 0.00 41.65 3.55
2728 2764 3.879892 GAGTGGACTTGGCATCTAAATCC 59.120 47.826 0.00 0.00 0.00 3.01
2823 2859 7.279615 TGTAATGTTTAGTGGTATCCCTGATG 58.720 38.462 0.00 0.00 0.00 3.07
2921 2957 5.415701 GCTTGGAATTTAGGATGTTGAGTGA 59.584 40.000 0.00 0.00 0.00 3.41
2977 3016 2.847959 TGTGTGCACTTGTCATTGTG 57.152 45.000 19.41 3.05 37.26 3.33
2991 3030 5.911752 TGTCATTGTGGCTTGTTATTGTTT 58.088 33.333 0.00 0.00 0.00 2.83
2992 3031 6.344500 TGTCATTGTGGCTTGTTATTGTTTT 58.656 32.000 0.00 0.00 0.00 2.43
3092 3132 4.411256 AAAAAGACACCAAGGACGTAGA 57.589 40.909 0.00 0.00 0.00 2.59
3093 3133 4.411256 AAAAGACACCAAGGACGTAGAA 57.589 40.909 0.00 0.00 0.00 2.10
3094 3134 4.411256 AAAGACACCAAGGACGTAGAAA 57.589 40.909 0.00 0.00 0.00 2.52
3095 3135 4.411256 AAGACACCAAGGACGTAGAAAA 57.589 40.909 0.00 0.00 0.00 2.29
3096 3136 3.725490 AGACACCAAGGACGTAGAAAAC 58.275 45.455 0.00 0.00 0.00 2.43
3097 3137 3.133362 AGACACCAAGGACGTAGAAAACA 59.867 43.478 0.00 0.00 0.00 2.83
3098 3138 3.200483 ACACCAAGGACGTAGAAAACAC 58.800 45.455 0.00 0.00 0.00 3.32
3099 3139 2.220133 CACCAAGGACGTAGAAAACACG 59.780 50.000 0.00 0.00 44.80 4.49
3100 3140 2.101249 ACCAAGGACGTAGAAAACACGA 59.899 45.455 1.43 0.00 41.91 4.35
3101 3141 2.729882 CCAAGGACGTAGAAAACACGAG 59.270 50.000 1.43 0.00 41.91 4.18
3102 3142 3.551454 CCAAGGACGTAGAAAACACGAGA 60.551 47.826 1.43 0.00 41.91 4.04
3103 3143 3.996150 AGGACGTAGAAAACACGAGAA 57.004 42.857 1.43 0.00 41.91 2.87
3104 3144 4.311816 AGGACGTAGAAAACACGAGAAA 57.688 40.909 1.43 0.00 41.91 2.52
3105 3145 4.296690 AGGACGTAGAAAACACGAGAAAG 58.703 43.478 1.43 0.00 41.91 2.62
3106 3146 4.037208 AGGACGTAGAAAACACGAGAAAGA 59.963 41.667 1.43 0.00 41.91 2.52
3107 3147 4.922103 GGACGTAGAAAACACGAGAAAGAT 59.078 41.667 1.43 0.00 41.91 2.40
3108 3148 5.060693 GGACGTAGAAAACACGAGAAAGATC 59.939 44.000 1.43 0.00 41.91 2.75
3109 3149 5.526115 ACGTAGAAAACACGAGAAAGATCA 58.474 37.500 1.43 0.00 41.91 2.92
3110 3150 5.629849 ACGTAGAAAACACGAGAAAGATCAG 59.370 40.000 1.43 0.00 41.91 2.90
3111 3151 5.856986 CGTAGAAAACACGAGAAAGATCAGA 59.143 40.000 0.00 0.00 41.91 3.27
3112 3152 6.528423 CGTAGAAAACACGAGAAAGATCAGAT 59.472 38.462 0.00 0.00 41.91 2.90
3113 3153 6.718454 AGAAAACACGAGAAAGATCAGATG 57.282 37.500 0.00 0.00 0.00 2.90
3114 3154 5.641209 AGAAAACACGAGAAAGATCAGATGG 59.359 40.000 0.00 0.00 0.00 3.51
3115 3155 4.543590 AACACGAGAAAGATCAGATGGT 57.456 40.909 0.00 0.00 0.00 3.55
3116 3156 4.116747 ACACGAGAAAGATCAGATGGTC 57.883 45.455 0.00 0.00 0.00 4.02
3117 3157 3.766591 ACACGAGAAAGATCAGATGGTCT 59.233 43.478 0.00 0.00 0.00 3.85
3118 3158 4.950475 ACACGAGAAAGATCAGATGGTCTA 59.050 41.667 0.00 0.00 0.00 2.59
3119 3159 5.419155 ACACGAGAAAGATCAGATGGTCTAA 59.581 40.000 0.00 0.00 0.00 2.10
3120 3160 6.097554 ACACGAGAAAGATCAGATGGTCTAAT 59.902 38.462 0.00 0.00 0.00 1.73
3121 3161 6.640499 CACGAGAAAGATCAGATGGTCTAATC 59.360 42.308 0.00 0.00 0.00 1.75
3122 3162 6.322456 ACGAGAAAGATCAGATGGTCTAATCA 59.678 38.462 0.00 0.00 0.00 2.57
3123 3163 7.015098 ACGAGAAAGATCAGATGGTCTAATCAT 59.985 37.037 0.00 0.00 0.00 2.45
3124 3164 8.518702 CGAGAAAGATCAGATGGTCTAATCATA 58.481 37.037 0.00 0.00 0.00 2.15
3160 3200 9.736023 AAAAGACATCAAGAACATAGAAAACAC 57.264 29.630 0.00 0.00 0.00 3.32
3165 3205 7.441157 ACATCAAGAACATAGAAAACACGAGAA 59.559 33.333 0.00 0.00 0.00 2.87
3206 3246 5.646215 AGCTACTTGTACATATCCCTAGCT 58.354 41.667 0.00 3.88 32.65 3.32
3213 3253 5.464069 TGTACATATCCCTAGCTTTGAGGA 58.536 41.667 2.33 0.00 35.99 3.71
3238 3278 5.366768 TGAACTACTCCTTCCTTATCATGGG 59.633 44.000 0.00 0.00 0.00 4.00
3281 3321 1.408822 GCCTTCGGTGATGATTTCCCT 60.409 52.381 0.00 0.00 0.00 4.20
3287 3327 2.418746 CGGTGATGATTTCCCTCTTCGT 60.419 50.000 0.00 0.00 0.00 3.85
3325 3365 7.918076 ACAGGACTCTAGATGGTATTTTGAAA 58.082 34.615 0.00 0.00 0.00 2.69
3363 3403 2.099427 CGGTGGAGTCTAAGTTCTAGGC 59.901 54.545 0.00 0.00 0.00 3.93
3374 3414 9.036980 AGTCTAAGTTCTAGGCTTATTTCTGAA 57.963 33.333 0.00 0.00 0.00 3.02
3420 3466 2.255881 TGTCGGTCTCACGCGAAGA 61.256 57.895 15.93 12.84 0.00 2.87
3421 3467 1.136984 GTCGGTCTCACGCGAAGAT 59.863 57.895 15.93 0.00 0.00 2.40
3514 3566 0.605589 CGTTGCTCTTCTGGTCCTCT 59.394 55.000 0.00 0.00 0.00 3.69
3526 3578 0.603569 GGTCCTCTCACGAAGCTTCA 59.396 55.000 25.47 6.04 0.00 3.02
3595 3652 7.335924 TCCATCCCAAGAACTTTTATTTCTACG 59.664 37.037 0.00 0.00 32.81 3.51
3684 3741 4.944260 ATAAAATTGCCCCCAAACCATT 57.056 36.364 0.00 0.00 34.05 3.16
3694 3753 6.610830 TGCCCCCAAACCATTTAAATTTTTA 58.389 32.000 0.00 0.00 0.00 1.52
3764 3823 8.429237 TGTATCAACATCCCCAAACTTAATTT 57.571 30.769 0.00 0.00 0.00 1.82
3779 3838 7.856145 AACTTAATTTCTGCTCATTCTCGAT 57.144 32.000 0.00 0.00 0.00 3.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 9.246670 TGGTGAACATTTTCTGAATAGATGAAT 57.753 29.630 12.76 0.00 31.81 2.57
15 16 8.634335 TGGTGAACATTTTCTGAATAGATGAA 57.366 30.769 12.76 0.00 31.81 2.57
16 17 8.634335 TTGGTGAACATTTTCTGAATAGATGA 57.366 30.769 12.76 0.00 31.81 2.92
17 18 9.865321 AATTGGTGAACATTTTCTGAATAGATG 57.135 29.630 0.00 0.00 31.81 2.90
19 20 9.076781 TGAATTGGTGAACATTTTCTGAATAGA 57.923 29.630 0.00 0.00 32.36 1.98
20 21 9.350357 CTGAATTGGTGAACATTTTCTGAATAG 57.650 33.333 0.00 0.00 32.36 1.73
21 22 9.076781 TCTGAATTGGTGAACATTTTCTGAATA 57.923 29.630 0.00 0.00 32.15 1.75
22 23 7.954835 TCTGAATTGGTGAACATTTTCTGAAT 58.045 30.769 0.00 0.00 32.15 2.57
23 24 7.345422 TCTGAATTGGTGAACATTTTCTGAA 57.655 32.000 2.35 0.00 32.15 3.02
24 25 6.957920 TCTGAATTGGTGAACATTTTCTGA 57.042 33.333 0.00 1.11 32.39 3.27
25 26 8.422973 TTTTCTGAATTGGTGAACATTTTCTG 57.577 30.769 0.00 0.00 32.36 3.02
26 27 9.617523 ATTTTTCTGAATTGGTGAACATTTTCT 57.382 25.926 0.00 0.00 32.36 2.52
27 28 9.654417 CATTTTTCTGAATTGGTGAACATTTTC 57.346 29.630 0.00 0.00 0.00 2.29
28 29 9.176460 ACATTTTTCTGAATTGGTGAACATTTT 57.824 25.926 0.00 0.00 0.00 1.82
29 30 8.735692 ACATTTTTCTGAATTGGTGAACATTT 57.264 26.923 0.00 0.00 0.00 2.32
30 31 8.735692 AACATTTTTCTGAATTGGTGAACATT 57.264 26.923 0.00 0.00 0.00 2.71
31 32 7.986320 TGAACATTTTTCTGAATTGGTGAACAT 59.014 29.630 0.00 0.00 0.00 2.71
32 33 7.277539 GTGAACATTTTTCTGAATTGGTGAACA 59.722 33.333 0.00 0.00 0.00 3.18
33 34 7.515059 CGTGAACATTTTTCTGAATTGGTGAAC 60.515 37.037 0.00 0.00 0.00 3.18
34 35 6.475076 CGTGAACATTTTTCTGAATTGGTGAA 59.525 34.615 0.00 0.00 0.00 3.18
35 36 5.976534 CGTGAACATTTTTCTGAATTGGTGA 59.023 36.000 0.00 0.00 0.00 4.02
36 37 5.976534 TCGTGAACATTTTTCTGAATTGGTG 59.023 36.000 0.00 0.00 0.00 4.17
37 38 6.142818 TCGTGAACATTTTTCTGAATTGGT 57.857 33.333 0.00 0.00 0.00 3.67
38 39 6.208644 ACTCGTGAACATTTTTCTGAATTGG 58.791 36.000 0.00 0.00 0.00 3.16
39 40 7.684062 AACTCGTGAACATTTTTCTGAATTG 57.316 32.000 0.00 0.00 0.00 2.32
40 41 9.796120 TTAAACTCGTGAACATTTTTCTGAATT 57.204 25.926 0.00 0.00 0.00 2.17
41 42 9.796120 TTTAAACTCGTGAACATTTTTCTGAAT 57.204 25.926 0.00 0.00 0.00 2.57
42 43 9.627395 TTTTAAACTCGTGAACATTTTTCTGAA 57.373 25.926 0.00 0.00 0.00 3.02
43 44 9.627395 TTTTTAAACTCGTGAACATTTTTCTGA 57.373 25.926 0.00 0.00 0.00 3.27
150 151 9.176460 CCTGCCATTTTTAAATTATCCAACATT 57.824 29.630 0.00 0.00 0.00 2.71
151 152 7.774625 CCCTGCCATTTTTAAATTATCCAACAT 59.225 33.333 0.00 0.00 0.00 2.71
152 153 7.038017 TCCCTGCCATTTTTAAATTATCCAACA 60.038 33.333 0.00 0.00 0.00 3.33
153 154 7.334858 TCCCTGCCATTTTTAAATTATCCAAC 58.665 34.615 0.00 0.00 0.00 3.77
154 155 7.502060 TCCCTGCCATTTTTAAATTATCCAA 57.498 32.000 0.00 0.00 0.00 3.53
155 156 7.688918 ATCCCTGCCATTTTTAAATTATCCA 57.311 32.000 0.00 0.00 0.00 3.41
156 157 8.978874 AAATCCCTGCCATTTTTAAATTATCC 57.021 30.769 0.00 0.00 0.00 2.59
215 216 9.430623 TGAAATCGTGAATAATTTCTGTCTACA 57.569 29.630 8.71 0.00 40.77 2.74
262 263 9.072294 CATCTTTTACAAACTCGTGAACTTTTT 57.928 29.630 0.00 0.00 0.00 1.94
263 264 8.241367 ACATCTTTTACAAACTCGTGAACTTTT 58.759 29.630 0.00 0.00 0.00 2.27
264 265 7.758495 ACATCTTTTACAAACTCGTGAACTTT 58.242 30.769 0.00 0.00 0.00 2.66
265 266 7.316544 ACATCTTTTACAAACTCGTGAACTT 57.683 32.000 0.00 0.00 0.00 2.66
266 267 6.920569 ACATCTTTTACAAACTCGTGAACT 57.079 33.333 0.00 0.00 0.00 3.01
267 268 7.163682 GTGAACATCTTTTACAAACTCGTGAAC 59.836 37.037 0.00 0.00 0.00 3.18
268 269 7.148390 TGTGAACATCTTTTACAAACTCGTGAA 60.148 33.333 0.00 0.00 0.00 3.18
269 270 6.314152 TGTGAACATCTTTTACAAACTCGTGA 59.686 34.615 0.00 0.00 0.00 4.35
270 271 6.482835 TGTGAACATCTTTTACAAACTCGTG 58.517 36.000 0.00 0.00 0.00 4.35
271 272 6.671614 TGTGAACATCTTTTACAAACTCGT 57.328 33.333 0.00 0.00 0.00 4.18
272 273 7.962934 TTTGTGAACATCTTTTACAAACTCG 57.037 32.000 3.69 0.00 36.61 4.18
273 274 8.268738 GCATTTGTGAACATCTTTTACAAACTC 58.731 33.333 8.67 2.35 42.04 3.01
274 275 7.763528 TGCATTTGTGAACATCTTTTACAAACT 59.236 29.630 8.67 0.00 42.04 2.66
275 276 7.904094 TGCATTTGTGAACATCTTTTACAAAC 58.096 30.769 8.67 0.75 42.04 2.93
276 277 7.978414 TCTGCATTTGTGAACATCTTTTACAAA 59.022 29.630 8.85 8.85 42.99 2.83
277 278 7.487484 TCTGCATTTGTGAACATCTTTTACAA 58.513 30.769 0.00 0.00 0.00 2.41
278 279 7.036996 TCTGCATTTGTGAACATCTTTTACA 57.963 32.000 0.00 0.00 0.00 2.41
279 280 7.928908 TTCTGCATTTGTGAACATCTTTTAC 57.071 32.000 0.00 0.00 0.00 2.01
280 281 8.412456 TCTTTCTGCATTTGTGAACATCTTTTA 58.588 29.630 0.00 0.00 0.00 1.52
281 282 7.267128 TCTTTCTGCATTTGTGAACATCTTTT 58.733 30.769 0.00 0.00 0.00 2.27
282 283 6.808829 TCTTTCTGCATTTGTGAACATCTTT 58.191 32.000 0.00 0.00 0.00 2.52
283 284 6.263842 TCTCTTTCTGCATTTGTGAACATCTT 59.736 34.615 0.00 0.00 0.00 2.40
284 285 5.766670 TCTCTTTCTGCATTTGTGAACATCT 59.233 36.000 0.00 0.00 0.00 2.90
285 286 6.005583 TCTCTTTCTGCATTTGTGAACATC 57.994 37.500 0.00 0.00 0.00 3.06
286 287 6.395426 TTCTCTTTCTGCATTTGTGAACAT 57.605 33.333 0.00 0.00 0.00 2.71
287 288 5.221106 CCTTCTCTTTCTGCATTTGTGAACA 60.221 40.000 0.00 0.00 0.00 3.18
288 289 5.009010 TCCTTCTCTTTCTGCATTTGTGAAC 59.991 40.000 0.00 0.00 0.00 3.18
289 290 5.132502 TCCTTCTCTTTCTGCATTTGTGAA 58.867 37.500 0.00 0.00 0.00 3.18
290 291 4.717877 TCCTTCTCTTTCTGCATTTGTGA 58.282 39.130 0.00 0.00 0.00 3.58
291 292 5.443185 TTCCTTCTCTTTCTGCATTTGTG 57.557 39.130 0.00 0.00 0.00 3.33
292 293 6.469782 TTTTCCTTCTCTTTCTGCATTTGT 57.530 33.333 0.00 0.00 0.00 2.83
293 294 7.205297 TCTTTTTCCTTCTCTTTCTGCATTTG 58.795 34.615 0.00 0.00 0.00 2.32
294 295 7.352079 TCTTTTTCCTTCTCTTTCTGCATTT 57.648 32.000 0.00 0.00 0.00 2.32
295 296 6.966534 TCTTTTTCCTTCTCTTTCTGCATT 57.033 33.333 0.00 0.00 0.00 3.56
296 297 6.966534 TTCTTTTTCCTTCTCTTTCTGCAT 57.033 33.333 0.00 0.00 0.00 3.96
297 298 6.603201 TCTTTCTTTTTCCTTCTCTTTCTGCA 59.397 34.615 0.00 0.00 0.00 4.41
298 299 7.032377 TCTTTCTTTTTCCTTCTCTTTCTGC 57.968 36.000 0.00 0.00 0.00 4.26
299 300 9.513727 CTTTCTTTCTTTTTCCTTCTCTTTCTG 57.486 33.333 0.00 0.00 0.00 3.02
300 301 9.467796 TCTTTCTTTCTTTTTCCTTCTCTTTCT 57.532 29.630 0.00 0.00 0.00 2.52
324 325 9.958180 TCCTTTTCCTTTTCTTTTTCATTTTCT 57.042 25.926 0.00 0.00 0.00 2.52
414 415 9.657419 CTGCCTTTCATTTACATTATTTCCTTT 57.343 29.630 0.00 0.00 0.00 3.11
415 416 9.034800 TCTGCCTTTCATTTACATTATTTCCTT 57.965 29.630 0.00 0.00 0.00 3.36
416 417 8.593945 TCTGCCTTTCATTTACATTATTTCCT 57.406 30.769 0.00 0.00 0.00 3.36
417 418 9.651913 TTTCTGCCTTTCATTTACATTATTTCC 57.348 29.630 0.00 0.00 0.00 3.13
423 424 9.211485 CATCTTTTTCTGCCTTTCATTTACATT 57.789 29.630 0.00 0.00 0.00 2.71
424 425 8.587608 TCATCTTTTTCTGCCTTTCATTTACAT 58.412 29.630 0.00 0.00 0.00 2.29
425 426 7.950512 TCATCTTTTTCTGCCTTTCATTTACA 58.049 30.769 0.00 0.00 0.00 2.41
426 427 8.816640 TTCATCTTTTTCTGCCTTTCATTTAC 57.183 30.769 0.00 0.00 0.00 2.01
427 428 9.480053 CTTTCATCTTTTTCTGCCTTTCATTTA 57.520 29.630 0.00 0.00 0.00 1.40
428 429 7.443272 CCTTTCATCTTTTTCTGCCTTTCATTT 59.557 33.333 0.00 0.00 0.00 2.32
429 430 6.932960 CCTTTCATCTTTTTCTGCCTTTCATT 59.067 34.615 0.00 0.00 0.00 2.57
430 431 6.268387 TCCTTTCATCTTTTTCTGCCTTTCAT 59.732 34.615 0.00 0.00 0.00 2.57
431 432 5.598005 TCCTTTCATCTTTTTCTGCCTTTCA 59.402 36.000 0.00 0.00 0.00 2.69
432 433 6.089249 TCCTTTCATCTTTTTCTGCCTTTC 57.911 37.500 0.00 0.00 0.00 2.62
433 434 6.484364 TTCCTTTCATCTTTTTCTGCCTTT 57.516 33.333 0.00 0.00 0.00 3.11
434 435 6.484364 TTTCCTTTCATCTTTTTCTGCCTT 57.516 33.333 0.00 0.00 0.00 4.35
435 436 6.484364 TTTTCCTTTCATCTTTTTCTGCCT 57.516 33.333 0.00 0.00 0.00 4.75
436 437 7.734924 ATTTTTCCTTTCATCTTTTTCTGCC 57.265 32.000 0.00 0.00 0.00 4.85
461 462 8.059461 CCTCCCCAGACTAGGTTATTTTATTTT 58.941 37.037 0.00 0.00 0.00 1.82
462 463 7.185856 ACCTCCCCAGACTAGGTTATTTTATTT 59.814 37.037 0.00 0.00 40.82 1.40
463 464 6.681541 ACCTCCCCAGACTAGGTTATTTTATT 59.318 38.462 0.00 0.00 40.82 1.40
464 465 6.218053 ACCTCCCCAGACTAGGTTATTTTAT 58.782 40.000 0.00 0.00 40.82 1.40
465 466 5.606761 ACCTCCCCAGACTAGGTTATTTTA 58.393 41.667 0.00 0.00 40.82 1.52
466 467 4.445564 ACCTCCCCAGACTAGGTTATTTT 58.554 43.478 0.00 0.00 40.82 1.82
467 468 4.090027 ACCTCCCCAGACTAGGTTATTT 57.910 45.455 0.00 0.00 40.82 1.40
468 469 3.797671 ACCTCCCCAGACTAGGTTATT 57.202 47.619 0.00 0.00 40.82 1.40
472 473 3.078612 TCTTAAACCTCCCCAGACTAGGT 59.921 47.826 0.00 0.00 45.62 3.08
473 474 3.721021 TCTTAAACCTCCCCAGACTAGG 58.279 50.000 0.00 0.00 36.42 3.02
474 475 5.087391 GTTCTTAAACCTCCCCAGACTAG 57.913 47.826 0.00 0.00 0.00 2.57
487 488 9.589111 TTTTTGGTATGACAAAGGTTCTTAAAC 57.411 29.630 0.00 0.00 40.97 2.01
488 489 9.810545 CTTTTTGGTATGACAAAGGTTCTTAAA 57.189 29.630 0.00 0.00 40.97 1.52
489 490 8.417884 CCTTTTTGGTATGACAAAGGTTCTTAA 58.582 33.333 0.00 0.00 40.97 1.85
490 491 7.780745 TCCTTTTTGGTATGACAAAGGTTCTTA 59.219 33.333 8.92 0.00 43.96 2.10
491 492 6.609616 TCCTTTTTGGTATGACAAAGGTTCTT 59.390 34.615 8.92 0.00 43.96 2.52
492 493 6.133356 TCCTTTTTGGTATGACAAAGGTTCT 58.867 36.000 8.92 0.00 43.96 3.01
493 494 6.399639 TCCTTTTTGGTATGACAAAGGTTC 57.600 37.500 8.92 0.00 43.96 3.62
494 495 5.221441 GCTCCTTTTTGGTATGACAAAGGTT 60.221 40.000 8.92 0.00 43.96 3.50
495 496 4.280929 GCTCCTTTTTGGTATGACAAAGGT 59.719 41.667 8.92 0.00 43.96 3.50
496 497 4.524328 AGCTCCTTTTTGGTATGACAAAGG 59.476 41.667 3.53 3.53 44.64 3.11
497 498 5.712152 AGCTCCTTTTTGGTATGACAAAG 57.288 39.130 0.00 0.00 40.97 2.77
498 499 6.303839 AGTAGCTCCTTTTTGGTATGACAAA 58.696 36.000 0.00 0.00 38.48 2.83
499 500 5.876357 AGTAGCTCCTTTTTGGTATGACAA 58.124 37.500 0.00 0.00 37.07 3.18
500 501 5.499004 AGTAGCTCCTTTTTGGTATGACA 57.501 39.130 0.00 0.00 37.07 3.58
501 502 5.123979 CCAAGTAGCTCCTTTTTGGTATGAC 59.876 44.000 0.00 0.00 34.88 3.06
502 503 5.253330 CCAAGTAGCTCCTTTTTGGTATGA 58.747 41.667 0.00 0.00 34.88 2.15
503 504 4.399303 CCCAAGTAGCTCCTTTTTGGTATG 59.601 45.833 0.00 0.00 37.24 2.39
504 505 4.600062 CCCAAGTAGCTCCTTTTTGGTAT 58.400 43.478 0.00 0.00 37.24 2.73
505 506 3.812882 GCCCAAGTAGCTCCTTTTTGGTA 60.813 47.826 0.00 0.00 37.24 3.25
506 507 2.876581 CCCAAGTAGCTCCTTTTTGGT 58.123 47.619 0.00 0.00 37.24 3.67
507 508 1.546029 GCCCAAGTAGCTCCTTTTTGG 59.454 52.381 0.00 0.00 38.37 3.28
508 509 1.546029 GGCCCAAGTAGCTCCTTTTTG 59.454 52.381 0.00 0.00 0.00 2.44
509 510 1.146982 TGGCCCAAGTAGCTCCTTTTT 59.853 47.619 0.00 0.00 0.00 1.94
510 511 0.777446 TGGCCCAAGTAGCTCCTTTT 59.223 50.000 0.00 0.00 0.00 2.27
511 512 0.038310 GTGGCCCAAGTAGCTCCTTT 59.962 55.000 0.00 0.00 0.00 3.11
512 513 1.685820 GTGGCCCAAGTAGCTCCTT 59.314 57.895 0.00 0.00 0.00 3.36
513 514 2.301738 GGTGGCCCAAGTAGCTCCT 61.302 63.158 0.00 0.00 0.00 3.69
514 515 2.137177 TTGGTGGCCCAAGTAGCTCC 62.137 60.000 0.00 0.00 45.93 4.70
515 516 1.378762 TTGGTGGCCCAAGTAGCTC 59.621 57.895 0.00 0.00 45.93 4.09
516 517 3.587840 TTGGTGGCCCAAGTAGCT 58.412 55.556 0.00 0.00 45.93 3.32
523 524 0.467384 CACACATTTTTGGTGGCCCA 59.533 50.000 0.00 0.00 40.54 5.36
524 525 0.884259 GCACACATTTTTGGTGGCCC 60.884 55.000 0.00 0.00 40.54 5.80
525 526 0.179062 TGCACACATTTTTGGTGGCC 60.179 50.000 0.00 0.00 40.54 5.36
526 527 1.881591 ATGCACACATTTTTGGTGGC 58.118 45.000 0.00 0.00 40.54 5.01
774 775 6.316390 GGACACACTCTCTTTCTCAAAAAGAA 59.684 38.462 2.25 0.00 42.35 2.52
775 776 5.817816 GGACACACTCTCTTTCTCAAAAAGA 59.182 40.000 0.77 0.77 35.25 2.52
776 777 5.586243 TGGACACACTCTCTTTCTCAAAAAG 59.414 40.000 0.00 0.00 0.00 2.27
777 778 5.496556 TGGACACACTCTCTTTCTCAAAAA 58.503 37.500 0.00 0.00 0.00 1.94
778 779 5.097742 TGGACACACTCTCTTTCTCAAAA 57.902 39.130 0.00 0.00 0.00 2.44
779 780 4.753516 TGGACACACTCTCTTTCTCAAA 57.246 40.909 0.00 0.00 0.00 2.69
780 781 4.753516 TTGGACACACTCTCTTTCTCAA 57.246 40.909 0.00 0.00 0.00 3.02
781 782 4.753516 TTTGGACACACTCTCTTTCTCA 57.246 40.909 0.00 0.00 0.00 3.27
782 783 4.083590 GCATTTGGACACACTCTCTTTCTC 60.084 45.833 0.00 0.00 0.00 2.87
783 784 3.817647 GCATTTGGACACACTCTCTTTCT 59.182 43.478 0.00 0.00 0.00 2.52
784 785 3.364366 CGCATTTGGACACACTCTCTTTC 60.364 47.826 0.00 0.00 0.00 2.62
785 786 2.549754 CGCATTTGGACACACTCTCTTT 59.450 45.455 0.00 0.00 0.00 2.52
786 787 2.146342 CGCATTTGGACACACTCTCTT 58.854 47.619 0.00 0.00 0.00 2.85
807 808 4.858692 CCAATATTTTGTTTCTCACAGCCG 59.141 41.667 0.00 0.00 36.48 5.52
808 809 5.170748 CCCAATATTTTGTTTCTCACAGCC 58.829 41.667 0.00 0.00 36.48 4.85
873 884 2.619074 GGCCTGGTTTGTCTCTTGCTAT 60.619 50.000 0.00 0.00 0.00 2.97
874 885 1.271379 GGCCTGGTTTGTCTCTTGCTA 60.271 52.381 0.00 0.00 0.00 3.49
875 886 0.538287 GGCCTGGTTTGTCTCTTGCT 60.538 55.000 0.00 0.00 0.00 3.91
876 887 0.538287 AGGCCTGGTTTGTCTCTTGC 60.538 55.000 3.11 0.00 0.00 4.01
877 888 2.859165 TAGGCCTGGTTTGTCTCTTG 57.141 50.000 17.99 0.00 0.00 3.02
878 889 4.162509 GTCTATAGGCCTGGTTTGTCTCTT 59.837 45.833 17.99 0.00 0.00 2.85
879 890 3.707102 GTCTATAGGCCTGGTTTGTCTCT 59.293 47.826 17.99 0.00 0.00 3.10
880 891 3.451178 TGTCTATAGGCCTGGTTTGTCTC 59.549 47.826 17.99 0.00 0.00 3.36
881 892 3.450904 TGTCTATAGGCCTGGTTTGTCT 58.549 45.455 17.99 0.00 0.00 3.41
935 947 5.450965 GGGTTTTAGCCTTGTGATGATGATG 60.451 44.000 0.00 0.00 31.81 3.07
936 948 4.646492 GGGTTTTAGCCTTGTGATGATGAT 59.354 41.667 0.00 0.00 31.81 2.45
937 949 4.016444 GGGTTTTAGCCTTGTGATGATGA 58.984 43.478 0.00 0.00 31.81 2.92
1110 1123 4.360405 GAGGGCTTGGCGGGGAAA 62.360 66.667 0.00 0.00 0.00 3.13
1129 1142 2.586357 CGCGGCTAAGGAGGAAGC 60.586 66.667 0.00 0.00 38.03 3.86
1130 1143 0.391263 AAACGCGGCTAAGGAGGAAG 60.391 55.000 12.47 0.00 0.00 3.46
1131 1144 0.390735 GAAACGCGGCTAAGGAGGAA 60.391 55.000 12.47 0.00 0.00 3.36
1136 1152 1.814169 GGGAGAAACGCGGCTAAGG 60.814 63.158 12.47 0.00 0.00 2.69
1139 1155 3.777910 GGGGGAGAAACGCGGCTA 61.778 66.667 12.47 0.00 0.00 3.93
1347 1363 2.353956 TCGATCATCTGCTCGCGC 60.354 61.111 0.00 0.00 34.12 6.86
1414 1430 1.284841 ATCAGCAGGGAGAAAGGGGG 61.285 60.000 0.00 0.00 0.00 5.40
1415 1431 0.106819 CATCAGCAGGGAGAAAGGGG 60.107 60.000 0.00 0.00 0.00 4.79
1590 1609 6.462500 TCTATCTCCTGCATAGCAATTTCTC 58.538 40.000 0.00 0.00 38.41 2.87
1591 1610 6.430962 TCTATCTCCTGCATAGCAATTTCT 57.569 37.500 0.00 0.00 38.41 2.52
1702 1732 3.379057 TGACGCTCAAACGGATGTATCTA 59.621 43.478 0.00 0.00 37.37 1.98
1752 1782 5.123502 CAGTGATGATGAAAAGAGGTTCCAG 59.876 44.000 0.00 0.00 0.00 3.86
1761 1791 7.012044 TCTCATATGTGCAGTGATGATGAAAAG 59.988 37.037 1.90 0.00 0.00 2.27
1762 1792 6.824704 TCTCATATGTGCAGTGATGATGAAAA 59.175 34.615 1.90 0.00 0.00 2.29
1765 1795 5.540400 TCTCATATGTGCAGTGATGATGA 57.460 39.130 1.90 0.00 0.00 2.92
1844 1874 7.406104 AGAAGGAAAACTGAAGCCTACATTAT 58.594 34.615 0.00 0.00 0.00 1.28
2088 2119 9.463443 CATAAGAACAGGTTTAAACAAGAAAGG 57.537 33.333 19.57 3.72 0.00 3.11
2094 2125 6.981559 GGCAACATAAGAACAGGTTTAAACAA 59.018 34.615 19.57 0.00 0.00 2.83
2096 2127 6.640907 CAGGCAACATAAGAACAGGTTTAAAC 59.359 38.462 9.98 9.98 41.41 2.01
2097 2128 6.322712 ACAGGCAACATAAGAACAGGTTTAAA 59.677 34.615 0.00 0.00 41.41 1.52
2100 2131 4.215109 ACAGGCAACATAAGAACAGGTTT 58.785 39.130 0.00 0.00 41.41 3.27
2103 2134 3.941483 CCTACAGGCAACATAAGAACAGG 59.059 47.826 0.00 0.00 41.41 4.00
2113 2144 2.727103 GGCAAACCTACAGGCAACA 58.273 52.632 0.00 0.00 39.32 3.33
2165 2196 5.818336 TCCATAGTCTTTGTTTTTCACGTCA 59.182 36.000 0.00 0.00 0.00 4.35
2168 2199 5.238650 ACCTCCATAGTCTTTGTTTTTCACG 59.761 40.000 0.00 0.00 0.00 4.35
2229 2260 6.370994 ACGTTAGTGATTAAGACTCGAGAAGA 59.629 38.462 21.68 0.18 0.00 2.87
2237 2268 8.521176 ACAGTGAATACGTTAGTGATTAAGACT 58.479 33.333 0.00 0.00 0.00 3.24
2474 2505 8.988064 TTTAAACACAAAACTGTTGATAAGCA 57.012 26.923 0.00 0.00 34.50 3.91
2529 2565 2.875317 TGTTTCAGCATGCGAGTAAACA 59.125 40.909 25.27 25.27 35.21 2.83
2542 2578 2.216898 AGCACTCTCTGTTGTTTCAGC 58.783 47.619 0.00 0.00 35.63 4.26
2600 2636 2.409948 ATTGTGTGCCTAGAAGCTCC 57.590 50.000 0.00 0.00 0.00 4.70
2683 2719 6.730447 TCAAGATATCCTCATGGTCCAAAAA 58.270 36.000 0.00 0.00 34.23 1.94
2694 2730 4.406972 CCAAGTCCACTCAAGATATCCTCA 59.593 45.833 0.00 0.00 0.00 3.86
2728 2764 9.778993 CAGGATTTCAGTCTATTGTTACATTTG 57.221 33.333 0.00 0.00 0.00 2.32
2823 2859 4.083590 GCTCAAAGTGAATGAACTCTCACC 60.084 45.833 0.00 0.00 42.45 4.02
2921 2957 6.207417 CCACATAAGGACTTTCAATCACACTT 59.793 38.462 0.00 0.00 0.00 3.16
3075 3115 3.133362 TGTTTTCTACGTCCTTGGTGTCT 59.867 43.478 0.00 0.00 0.00 3.41
3088 3128 7.201478 CCATCTGATCTTTCTCGTGTTTTCTAC 60.201 40.741 0.00 0.00 0.00 2.59
3090 3130 5.641209 CCATCTGATCTTTCTCGTGTTTTCT 59.359 40.000 0.00 0.00 0.00 2.52
3091 3131 5.409826 ACCATCTGATCTTTCTCGTGTTTTC 59.590 40.000 0.00 0.00 0.00 2.29
3092 3132 5.308825 ACCATCTGATCTTTCTCGTGTTTT 58.691 37.500 0.00 0.00 0.00 2.43
3093 3133 4.899502 ACCATCTGATCTTTCTCGTGTTT 58.100 39.130 0.00 0.00 0.00 2.83
3094 3134 4.221703 AGACCATCTGATCTTTCTCGTGTT 59.778 41.667 0.00 0.00 0.00 3.32
3095 3135 3.766591 AGACCATCTGATCTTTCTCGTGT 59.233 43.478 0.00 0.00 0.00 4.49
3096 3136 4.383850 AGACCATCTGATCTTTCTCGTG 57.616 45.455 0.00 0.00 0.00 4.35
3097 3137 6.322456 TGATTAGACCATCTGATCTTTCTCGT 59.678 38.462 10.78 0.00 39.43 4.18
3098 3138 6.743110 TGATTAGACCATCTGATCTTTCTCG 58.257 40.000 10.78 0.00 39.43 4.04
3134 3174 9.736023 GTGTTTTCTATGTTCTTGATGTCTTTT 57.264 29.630 0.00 0.00 0.00 2.27
3135 3175 8.070171 CGTGTTTTCTATGTTCTTGATGTCTTT 58.930 33.333 0.00 0.00 0.00 2.52
3136 3176 7.441157 TCGTGTTTTCTATGTTCTTGATGTCTT 59.559 33.333 0.00 0.00 0.00 3.01
3137 3177 6.929049 TCGTGTTTTCTATGTTCTTGATGTCT 59.071 34.615 0.00 0.00 0.00 3.41
3138 3178 7.116376 TCTCGTGTTTTCTATGTTCTTGATGTC 59.884 37.037 0.00 0.00 0.00 3.06
3139 3179 6.929049 TCTCGTGTTTTCTATGTTCTTGATGT 59.071 34.615 0.00 0.00 0.00 3.06
3140 3180 7.351414 TCTCGTGTTTTCTATGTTCTTGATG 57.649 36.000 0.00 0.00 0.00 3.07
3141 3181 7.962964 TTCTCGTGTTTTCTATGTTCTTGAT 57.037 32.000 0.00 0.00 0.00 2.57
3142 3182 7.709182 TCTTTCTCGTGTTTTCTATGTTCTTGA 59.291 33.333 0.00 0.00 0.00 3.02
3143 3183 7.851508 TCTTTCTCGTGTTTTCTATGTTCTTG 58.148 34.615 0.00 0.00 0.00 3.02
3144 3184 7.926555 TCTCTTTCTCGTGTTTTCTATGTTCTT 59.073 33.333 0.00 0.00 0.00 2.52
3145 3185 7.434492 TCTCTTTCTCGTGTTTTCTATGTTCT 58.566 34.615 0.00 0.00 0.00 3.01
3146 3186 7.595502 TCTCTCTTTCTCGTGTTTTCTATGTTC 59.404 37.037 0.00 0.00 0.00 3.18
3147 3187 7.434492 TCTCTCTTTCTCGTGTTTTCTATGTT 58.566 34.615 0.00 0.00 0.00 2.71
3148 3188 6.982852 TCTCTCTTTCTCGTGTTTTCTATGT 58.017 36.000 0.00 0.00 0.00 2.29
3149 3189 7.757173 TGATCTCTCTTTCTCGTGTTTTCTATG 59.243 37.037 0.00 0.00 0.00 2.23
3150 3190 7.831753 TGATCTCTCTTTCTCGTGTTTTCTAT 58.168 34.615 0.00 0.00 0.00 1.98
3151 3191 7.215719 TGATCTCTCTTTCTCGTGTTTTCTA 57.784 36.000 0.00 0.00 0.00 2.10
3152 3192 6.090483 TGATCTCTCTTTCTCGTGTTTTCT 57.910 37.500 0.00 0.00 0.00 2.52
3153 3193 6.771188 TTGATCTCTCTTTCTCGTGTTTTC 57.229 37.500 0.00 0.00 0.00 2.29
3154 3194 6.538742 TGTTTGATCTCTCTTTCTCGTGTTTT 59.461 34.615 0.00 0.00 0.00 2.43
3155 3195 6.018669 GTGTTTGATCTCTCTTTCTCGTGTTT 60.019 38.462 0.00 0.00 0.00 2.83
3156 3196 5.463724 GTGTTTGATCTCTCTTTCTCGTGTT 59.536 40.000 0.00 0.00 0.00 3.32
3157 3197 4.985409 GTGTTTGATCTCTCTTTCTCGTGT 59.015 41.667 0.00 0.00 0.00 4.49
3158 3198 4.984785 TGTGTTTGATCTCTCTTTCTCGTG 59.015 41.667 0.00 0.00 0.00 4.35
3159 3199 5.201713 TGTGTTTGATCTCTCTTTCTCGT 57.798 39.130 0.00 0.00 0.00 4.18
3160 3200 6.019961 GCTATGTGTTTGATCTCTCTTTCTCG 60.020 42.308 0.00 0.00 0.00 4.04
3165 3205 7.416964 AGTAGCTATGTGTTTGATCTCTCTT 57.583 36.000 0.00 0.00 0.00 2.85
3198 3238 3.454858 AGTTCATCCTCAAAGCTAGGGA 58.545 45.455 1.10 0.79 34.66 4.20
3206 3246 5.094387 AGGAAGGAGTAGTTCATCCTCAAA 58.906 41.667 0.00 0.00 45.39 2.69
3213 3253 6.043706 CCCATGATAAGGAAGGAGTAGTTCAT 59.956 42.308 0.00 0.00 0.00 2.57
3238 3278 0.249489 CTTCATCATCCCGACGGTCC 60.249 60.000 13.94 0.00 0.00 4.46
3281 3321 1.118965 TTCCAGCACCCTGACGAAGA 61.119 55.000 0.00 0.00 41.77 2.87
3287 3327 1.461268 TCCTGTTCCAGCACCCTGA 60.461 57.895 0.00 0.00 41.77 3.86
3325 3365 2.427453 CACCGCCACAAGTCTCTATACT 59.573 50.000 0.00 0.00 0.00 2.12
3334 3374 0.830444 TAGACTCCACCGCCACAAGT 60.830 55.000 0.00 0.00 0.00 3.16
3514 3566 0.034896 GGAACCCTGAAGCTTCGTGA 59.965 55.000 21.11 3.38 0.00 4.35
3562 3619 2.922283 AGTTCTTGGGATGGACTGGAAT 59.078 45.455 0.00 0.00 0.00 3.01
3636 3693 5.918426 TTTAAATGGAATTAACCCGGACC 57.082 39.130 0.73 0.00 33.67 4.46
3746 3805 5.086621 AGCAGAAATTAAGTTTGGGGATGT 58.913 37.500 0.00 0.00 0.00 3.06
3764 3823 6.465439 TTTACCTAATCGAGAATGAGCAGA 57.535 37.500 0.00 0.00 0.00 4.26
3798 3857 9.604626 GCTAGCATTCACACTTCATAAATTATC 57.395 33.333 10.63 0.00 0.00 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.