Multiple sequence alignment - TraesCS7A01G306700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G306700 chr7A 100.000 3638 0 0 1 3638 432982223 432978586 0.000000e+00 6719
1 TraesCS7A01G306700 chr7A 95.000 280 12 1 273 550 22164695 22164416 4.310000e-119 438
2 TraesCS7A01G306700 chr7A 94.964 278 12 1 275 550 472778337 472778060 5.580000e-118 435
3 TraesCS7A01G306700 chr7A 94.964 278 11 2 275 550 383183995 383183719 2.010000e-117 433
4 TraesCS7A01G306700 chr7B 95.185 1973 66 16 543 2506 379431752 379429800 0.000000e+00 3090
5 TraesCS7A01G306700 chr7B 95.890 1095 34 5 2545 3638 379429800 379428716 0.000000e+00 1762
6 TraesCS7A01G306700 chr7B 89.130 276 27 2 1 276 379432018 379431746 1.250000e-89 340
7 TraesCS7A01G306700 chr7D 94.389 2014 67 18 1651 3638 384948288 384946295 0.000000e+00 3051
8 TraesCS7A01G306700 chr7D 93.909 985 39 4 675 1647 384949528 384948553 0.000000e+00 1467
9 TraesCS7A01G306700 chr4A 95.636 275 10 1 275 547 541775639 541775913 1.200000e-119 440
10 TraesCS7A01G306700 chr4B 94.982 279 12 1 274 550 514215930 514215652 1.550000e-118 436
11 TraesCS7A01G306700 chr2D 94.386 285 14 1 273 555 429430811 429430527 1.550000e-118 436
12 TraesCS7A01G306700 chr3D 94.662 281 13 1 273 551 577146052 577145772 5.580000e-118 435
13 TraesCS7A01G306700 chr1D 94.964 278 12 1 273 548 12327917 12328194 5.580000e-118 435
14 TraesCS7A01G306700 chr5D 94.035 285 14 2 273 555 33710631 33710914 2.600000e-116 429


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G306700 chr7A 432978586 432982223 3637 True 6719.000000 6719 100.000000 1 3638 1 chr7A.!!$R3 3637
1 TraesCS7A01G306700 chr7B 379428716 379432018 3302 True 1730.666667 3090 93.401667 1 3638 3 chr7B.!!$R1 3637
2 TraesCS7A01G306700 chr7D 384946295 384949528 3233 True 2259.000000 3051 94.149000 675 3638 2 chr7D.!!$R1 2963

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
105 106 0.040425 AAAAACGACATGCAGACGGC 60.040 50.0 12.9 0.0 45.13 5.68 F
669 670 0.108615 CATCTTCACGAACGCCCTCT 60.109 55.0 0.0 0.0 0.00 3.69 F
1590 1606 0.252467 ACACTTCTCTCCCTCCCCTG 60.252 60.0 0.0 0.0 0.00 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1538 1554 0.682209 GCCACATGGGACTTGCTGAT 60.682 55.0 0.00 0.00 40.01 2.90 R
2420 2735 0.178068 CACCAACGATAGGGGGACTG 59.822 60.0 0.00 0.00 43.77 3.51 R
2844 3160 0.583438 CACTGACTGAAACAGCGGTG 59.417 55.0 14.13 14.13 37.95 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 1.086634 GCTCCCTGCTTCGATGTGAC 61.087 60.000 0.00 0.00 38.95 3.67
70 71 5.914997 GATTTGATCCATTTTCAACGACG 57.085 39.130 0.00 0.00 33.03 5.12
77 78 0.536460 ATTTTCAACGACGCCAGGGT 60.536 50.000 0.00 0.00 0.00 4.34
78 79 0.748729 TTTTCAACGACGCCAGGGTT 60.749 50.000 0.00 0.00 0.00 4.11
105 106 0.040425 AAAAACGACATGCAGACGGC 60.040 50.000 12.90 0.00 45.13 5.68
150 151 1.134220 ACTGGTCAACACGTGGTCAAT 60.134 47.619 21.57 0.00 0.00 2.57
153 154 3.745799 TGGTCAACACGTGGTCAATAAT 58.254 40.909 21.57 0.00 0.00 1.28
162 163 1.260561 GTGGTCAATAATGGCGCGTAG 59.739 52.381 8.43 0.00 29.54 3.51
187 188 2.284190 TCAACACGCTCAACAATGACA 58.716 42.857 0.00 0.00 0.00 3.58
194 195 5.120208 ACACGCTCAACAATGACAGTATAAC 59.880 40.000 0.00 0.00 0.00 1.89
197 198 5.445939 CGCTCAACAATGACAGTATAACCAC 60.446 44.000 0.00 0.00 0.00 4.16
198 199 5.445939 GCTCAACAATGACAGTATAACCACG 60.446 44.000 0.00 0.00 0.00 4.94
200 201 5.636121 TCAACAATGACAGTATAACCACGTC 59.364 40.000 0.00 0.00 0.00 4.34
201 202 5.401531 ACAATGACAGTATAACCACGTCT 57.598 39.130 0.00 0.00 0.00 4.18
203 204 5.637810 ACAATGACAGTATAACCACGTCTTG 59.362 40.000 0.00 0.00 0.00 3.02
204 205 4.859304 TGACAGTATAACCACGTCTTGT 57.141 40.909 0.00 0.00 0.00 3.16
206 207 3.829948 ACAGTATAACCACGTCTTGTCG 58.170 45.455 0.00 0.00 0.00 4.35
207 208 3.254166 ACAGTATAACCACGTCTTGTCGT 59.746 43.478 0.00 0.00 45.10 4.34
249 250 0.981183 ATTCTTGGGTGCGGTGACTA 59.019 50.000 0.00 0.00 0.00 2.59
256 257 0.872388 GGTGCGGTGACTAAAAGTGG 59.128 55.000 0.00 0.00 0.00 4.00
276 277 2.206750 GGCACACGACACAAGTTAAGA 58.793 47.619 0.00 0.00 0.00 2.10
277 278 2.033151 GGCACACGACACAAGTTAAGAC 60.033 50.000 0.00 0.00 0.00 3.01
278 279 2.864343 GCACACGACACAAGTTAAGACT 59.136 45.455 0.00 0.00 37.87 3.24
279 280 3.302480 GCACACGACACAAGTTAAGACTG 60.302 47.826 0.00 0.00 35.91 3.51
280 281 2.864343 ACACGACACAAGTTAAGACTGC 59.136 45.455 0.00 0.00 35.91 4.40
281 282 3.123804 CACGACACAAGTTAAGACTGCT 58.876 45.455 0.00 0.00 35.91 4.24
282 283 3.182572 CACGACACAAGTTAAGACTGCTC 59.817 47.826 0.00 0.00 35.91 4.26
283 284 3.181479 ACGACACAAGTTAAGACTGCTCA 60.181 43.478 0.00 0.00 35.91 4.26
284 285 3.182572 CGACACAAGTTAAGACTGCTCAC 59.817 47.826 0.00 0.00 35.91 3.51
285 286 3.123804 ACACAAGTTAAGACTGCTCACG 58.876 45.455 0.00 0.00 35.91 4.35
286 287 2.476619 CACAAGTTAAGACTGCTCACGG 59.523 50.000 0.00 0.00 35.91 4.94
287 288 2.102588 ACAAGTTAAGACTGCTCACGGT 59.897 45.455 0.00 0.00 35.91 4.83
288 289 2.440539 AGTTAAGACTGCTCACGGTG 57.559 50.000 0.56 0.56 34.75 4.94
289 290 1.000955 AGTTAAGACTGCTCACGGTGG 59.999 52.381 8.50 0.26 34.75 4.61
290 291 0.320374 TTAAGACTGCTCACGGTGGG 59.680 55.000 8.50 5.85 34.75 4.61
291 292 1.541310 TAAGACTGCTCACGGTGGGG 61.541 60.000 10.52 4.05 34.75 4.96
292 293 3.311110 GACTGCTCACGGTGGGGA 61.311 66.667 10.52 6.02 34.75 4.81
293 294 3.302347 GACTGCTCACGGTGGGGAG 62.302 68.421 25.59 25.59 42.53 4.30
294 295 3.314331 CTGCTCACGGTGGGGAGT 61.314 66.667 20.12 0.00 31.02 3.85
295 296 1.982395 CTGCTCACGGTGGGGAGTA 60.982 63.158 20.12 3.90 31.02 2.59
296 297 1.534476 TGCTCACGGTGGGGAGTAA 60.534 57.895 10.52 0.00 33.66 2.24
297 298 0.907704 TGCTCACGGTGGGGAGTAAT 60.908 55.000 10.52 0.00 33.66 1.89
298 299 1.117150 GCTCACGGTGGGGAGTAATA 58.883 55.000 10.52 0.00 33.66 0.98
299 300 1.692519 GCTCACGGTGGGGAGTAATAT 59.307 52.381 10.52 0.00 33.66 1.28
300 301 2.895404 GCTCACGGTGGGGAGTAATATA 59.105 50.000 10.52 0.00 33.66 0.86
301 302 3.056749 GCTCACGGTGGGGAGTAATATAG 60.057 52.174 10.52 0.00 33.66 1.31
302 303 4.404640 CTCACGGTGGGGAGTAATATAGA 58.595 47.826 8.50 0.00 0.00 1.98
303 304 4.404640 TCACGGTGGGGAGTAATATAGAG 58.595 47.826 8.50 0.00 0.00 2.43
304 305 4.141088 TCACGGTGGGGAGTAATATAGAGT 60.141 45.833 8.50 0.00 0.00 3.24
305 306 5.073554 TCACGGTGGGGAGTAATATAGAGTA 59.926 44.000 8.50 0.00 0.00 2.59
306 307 5.415077 CACGGTGGGGAGTAATATAGAGTAG 59.585 48.000 0.00 0.00 0.00 2.57
307 308 5.074239 ACGGTGGGGAGTAATATAGAGTAGT 59.926 44.000 0.00 0.00 0.00 2.73
308 309 6.273260 ACGGTGGGGAGTAATATAGAGTAGTA 59.727 42.308 0.00 0.00 0.00 1.82
309 310 7.170965 CGGTGGGGAGTAATATAGAGTAGTAA 58.829 42.308 0.00 0.00 0.00 2.24
310 311 7.120432 CGGTGGGGAGTAATATAGAGTAGTAAC 59.880 44.444 0.00 0.00 0.00 2.50
311 312 8.169393 GGTGGGGAGTAATATAGAGTAGTAACT 58.831 40.741 0.00 0.00 39.21 2.24
312 313 9.585369 GTGGGGAGTAATATAGAGTAGTAACTT 57.415 37.037 0.00 0.00 35.56 2.66
313 314 9.584008 TGGGGAGTAATATAGAGTAGTAACTTG 57.416 37.037 0.00 0.00 35.56 3.16
314 315 8.522003 GGGGAGTAATATAGAGTAGTAACTTGC 58.478 40.741 0.00 0.00 35.56 4.01
315 316 8.522003 GGGAGTAATATAGAGTAGTAACTTGCC 58.478 40.741 0.00 0.00 35.56 4.52
316 317 8.235905 GGAGTAATATAGAGTAGTAACTTGCCG 58.764 40.741 0.00 0.00 35.56 5.69
317 318 8.915057 AGTAATATAGAGTAGTAACTTGCCGA 57.085 34.615 0.00 0.00 35.56 5.54
318 319 9.517868 AGTAATATAGAGTAGTAACTTGCCGAT 57.482 33.333 0.00 0.00 35.56 4.18
319 320 9.557338 GTAATATAGAGTAGTAACTTGCCGATG 57.443 37.037 0.00 0.00 35.56 3.84
320 321 7.762588 ATATAGAGTAGTAACTTGCCGATGT 57.237 36.000 0.00 0.00 35.56 3.06
321 322 4.803098 AGAGTAGTAACTTGCCGATGTT 57.197 40.909 0.00 0.00 35.56 2.71
322 323 5.909621 AGAGTAGTAACTTGCCGATGTTA 57.090 39.130 0.00 0.00 35.56 2.41
323 324 5.648572 AGAGTAGTAACTTGCCGATGTTAC 58.351 41.667 7.64 7.64 45.03 2.50
328 329 5.945775 GTAACTTGCCGATGTTACTAGTC 57.054 43.478 0.00 0.00 42.82 2.59
329 330 4.803098 AACTTGCCGATGTTACTAGTCT 57.197 40.909 0.00 0.00 0.00 3.24
330 331 4.111375 ACTTGCCGATGTTACTAGTCTG 57.889 45.455 0.00 0.00 0.00 3.51
331 332 3.510360 ACTTGCCGATGTTACTAGTCTGT 59.490 43.478 0.00 0.00 0.00 3.41
332 333 3.503827 TGCCGATGTTACTAGTCTGTG 57.496 47.619 0.00 0.00 0.00 3.66
333 334 2.823747 TGCCGATGTTACTAGTCTGTGT 59.176 45.455 0.00 0.00 0.00 3.72
334 335 3.257375 TGCCGATGTTACTAGTCTGTGTT 59.743 43.478 0.00 0.00 0.00 3.32
335 336 4.460034 TGCCGATGTTACTAGTCTGTGTTA 59.540 41.667 0.00 0.00 0.00 2.41
336 337 4.797349 GCCGATGTTACTAGTCTGTGTTAC 59.203 45.833 0.00 0.00 0.00 2.50
337 338 5.392811 GCCGATGTTACTAGTCTGTGTTACT 60.393 44.000 0.00 0.00 0.00 2.24
338 339 6.183360 GCCGATGTTACTAGTCTGTGTTACTA 60.183 42.308 0.00 0.00 0.00 1.82
339 340 7.185453 CCGATGTTACTAGTCTGTGTTACTAC 58.815 42.308 0.00 0.00 0.00 2.73
340 341 7.185453 CGATGTTACTAGTCTGTGTTACTACC 58.815 42.308 0.00 0.00 0.00 3.18
341 342 7.065563 CGATGTTACTAGTCTGTGTTACTACCT 59.934 40.741 0.00 0.00 0.00 3.08
342 343 7.678947 TGTTACTAGTCTGTGTTACTACCTC 57.321 40.000 0.00 0.00 0.00 3.85
343 344 6.656693 TGTTACTAGTCTGTGTTACTACCTCC 59.343 42.308 0.00 0.00 0.00 4.30
344 345 5.252586 ACTAGTCTGTGTTACTACCTCCA 57.747 43.478 0.00 0.00 0.00 3.86
345 346 5.828871 ACTAGTCTGTGTTACTACCTCCAT 58.171 41.667 0.00 0.00 0.00 3.41
346 347 6.966751 ACTAGTCTGTGTTACTACCTCCATA 58.033 40.000 0.00 0.00 0.00 2.74
347 348 7.055378 ACTAGTCTGTGTTACTACCTCCATAG 58.945 42.308 0.00 0.00 0.00 2.23
348 349 5.828871 AGTCTGTGTTACTACCTCCATAGT 58.171 41.667 0.00 0.00 38.89 2.12
349 350 5.652891 AGTCTGTGTTACTACCTCCATAGTG 59.347 44.000 0.00 0.00 36.09 2.74
350 351 4.954202 TCTGTGTTACTACCTCCATAGTGG 59.046 45.833 0.00 0.00 36.09 4.00
351 352 4.938028 TGTGTTACTACCTCCATAGTGGA 58.062 43.478 0.00 0.00 45.98 4.02
367 368 9.025041 TCCATAGTGGATAGTAACATATGAGTG 57.975 37.037 10.38 0.00 42.67 3.51
368 369 8.253810 CCATAGTGGATAGTAACATATGAGTGG 58.746 40.741 10.38 0.00 40.96 4.00
369 370 8.807118 CATAGTGGATAGTAACATATGAGTGGT 58.193 37.037 10.38 0.00 0.00 4.16
371 372 8.958060 AGTGGATAGTAACATATGAGTGGTAT 57.042 34.615 10.38 0.00 0.00 2.73
372 373 9.026121 AGTGGATAGTAACATATGAGTGGTATC 57.974 37.037 10.38 8.55 0.00 2.24
373 374 8.803235 GTGGATAGTAACATATGAGTGGTATCA 58.197 37.037 10.38 0.00 0.00 2.15
374 375 9.547279 TGGATAGTAACATATGAGTGGTATCAT 57.453 33.333 10.38 0.00 42.52 2.45
375 376 9.809096 GGATAGTAACATATGAGTGGTATCATG 57.191 37.037 10.38 0.00 40.16 3.07
379 380 9.770097 AGTAACATATGAGTGGTATCATGAAAG 57.230 33.333 10.38 0.00 40.16 2.62
380 381 9.764363 GTAACATATGAGTGGTATCATGAAAGA 57.236 33.333 10.38 0.00 40.16 2.52
382 383 9.857656 AACATATGAGTGGTATCATGAAAGATT 57.142 29.630 10.38 0.00 40.16 2.40
383 384 9.857656 ACATATGAGTGGTATCATGAAAGATTT 57.142 29.630 10.38 0.00 40.16 2.17
414 415 7.798710 TTAGGCTATAGACTCATTATGCCTT 57.201 36.000 12.64 0.00 46.04 4.35
415 416 6.047511 AGGCTATAGACTCATTATGCCTTG 57.952 41.667 0.83 0.00 46.04 3.61
416 417 5.782331 AGGCTATAGACTCATTATGCCTTGA 59.218 40.000 0.83 0.00 46.04 3.02
417 418 6.270927 AGGCTATAGACTCATTATGCCTTGAA 59.729 38.462 0.83 0.00 46.04 2.69
418 419 6.936900 GGCTATAGACTCATTATGCCTTGAAA 59.063 38.462 3.21 0.00 36.52 2.69
419 420 7.609532 GGCTATAGACTCATTATGCCTTGAAAT 59.390 37.037 3.21 0.00 36.52 2.17
420 421 8.449397 GCTATAGACTCATTATGCCTTGAAATG 58.551 37.037 3.21 0.00 32.96 2.32
421 422 9.499479 CTATAGACTCATTATGCCTTGAAATGT 57.501 33.333 0.00 0.00 33.35 2.71
422 423 6.446781 AGACTCATTATGCCTTGAAATGTG 57.553 37.500 0.00 0.00 33.35 3.21
423 424 5.948162 AGACTCATTATGCCTTGAAATGTGT 59.052 36.000 0.00 0.00 39.01 3.72
424 425 5.957798 ACTCATTATGCCTTGAAATGTGTG 58.042 37.500 0.00 0.00 36.51 3.82
425 426 5.711506 ACTCATTATGCCTTGAAATGTGTGA 59.288 36.000 0.00 0.00 36.51 3.58
426 427 6.379133 ACTCATTATGCCTTGAAATGTGTGAT 59.621 34.615 0.00 0.00 36.51 3.06
427 428 6.566141 TCATTATGCCTTGAAATGTGTGATG 58.434 36.000 0.00 0.00 33.35 3.07
428 429 5.981088 TTATGCCTTGAAATGTGTGATGT 57.019 34.783 0.00 0.00 0.00 3.06
429 430 4.877378 ATGCCTTGAAATGTGTGATGTT 57.123 36.364 0.00 0.00 0.00 2.71
430 431 5.981088 ATGCCTTGAAATGTGTGATGTTA 57.019 34.783 0.00 0.00 0.00 2.41
431 432 5.119931 TGCCTTGAAATGTGTGATGTTAC 57.880 39.130 0.00 0.00 0.00 2.50
432 433 4.582240 TGCCTTGAAATGTGTGATGTTACA 59.418 37.500 0.00 0.00 0.00 2.41
433 434 5.156355 GCCTTGAAATGTGTGATGTTACAG 58.844 41.667 0.00 0.00 0.00 2.74
434 435 5.278463 GCCTTGAAATGTGTGATGTTACAGT 60.278 40.000 0.00 0.00 0.00 3.55
435 436 6.072728 GCCTTGAAATGTGTGATGTTACAGTA 60.073 38.462 0.00 0.00 0.00 2.74
436 437 7.521423 GCCTTGAAATGTGTGATGTTACAGTAA 60.521 37.037 0.00 0.00 0.00 2.24
437 438 7.803189 CCTTGAAATGTGTGATGTTACAGTAAC 59.197 37.037 15.58 15.58 39.11 2.50
438 439 8.445275 TTGAAATGTGTGATGTTACAGTAACT 57.555 30.769 21.56 9.41 39.38 2.24
439 440 9.549078 TTGAAATGTGTGATGTTACAGTAACTA 57.451 29.630 21.56 10.50 39.38 2.24
440 441 8.984764 TGAAATGTGTGATGTTACAGTAACTAC 58.015 33.333 21.56 17.34 39.38 2.73
441 442 7.900782 AATGTGTGATGTTACAGTAACTACC 57.099 36.000 21.56 12.18 39.38 3.18
442 443 6.659745 TGTGTGATGTTACAGTAACTACCT 57.340 37.500 21.56 6.57 39.38 3.08
443 444 7.764141 TGTGTGATGTTACAGTAACTACCTA 57.236 36.000 21.56 4.25 39.38 3.08
444 445 8.180706 TGTGTGATGTTACAGTAACTACCTAA 57.819 34.615 21.56 3.59 39.38 2.69
445 446 8.301720 TGTGTGATGTTACAGTAACTACCTAAG 58.698 37.037 21.56 0.00 39.38 2.18
446 447 8.302438 GTGTGATGTTACAGTAACTACCTAAGT 58.698 37.037 21.56 1.47 41.49 2.24
458 459 6.505048 AACTACCTAAGTTACCACAAACCT 57.495 37.500 0.00 0.00 46.85 3.50
459 460 6.106648 ACTACCTAAGTTACCACAAACCTC 57.893 41.667 0.00 0.00 33.35 3.85
460 461 5.842874 ACTACCTAAGTTACCACAAACCTCT 59.157 40.000 0.00 0.00 33.35 3.69
461 462 5.224821 ACCTAAGTTACCACAAACCTCTC 57.775 43.478 0.00 0.00 0.00 3.20
462 463 4.906060 ACCTAAGTTACCACAAACCTCTCT 59.094 41.667 0.00 0.00 0.00 3.10
463 464 5.011840 ACCTAAGTTACCACAAACCTCTCTC 59.988 44.000 0.00 0.00 0.00 3.20
464 465 4.353383 AAGTTACCACAAACCTCTCTCC 57.647 45.455 0.00 0.00 0.00 3.71
465 466 3.588569 AGTTACCACAAACCTCTCTCCT 58.411 45.455 0.00 0.00 0.00 3.69
466 467 3.974642 AGTTACCACAAACCTCTCTCCTT 59.025 43.478 0.00 0.00 0.00 3.36
467 468 5.152934 AGTTACCACAAACCTCTCTCCTTA 58.847 41.667 0.00 0.00 0.00 2.69
468 469 5.785940 AGTTACCACAAACCTCTCTCCTTAT 59.214 40.000 0.00 0.00 0.00 1.73
469 470 6.272558 AGTTACCACAAACCTCTCTCCTTATT 59.727 38.462 0.00 0.00 0.00 1.40
470 471 7.456902 AGTTACCACAAACCTCTCTCCTTATTA 59.543 37.037 0.00 0.00 0.00 0.98
471 472 6.697641 ACCACAAACCTCTCTCCTTATTAA 57.302 37.500 0.00 0.00 0.00 1.40
472 473 7.272144 ACCACAAACCTCTCTCCTTATTAAT 57.728 36.000 0.00 0.00 0.00 1.40
473 474 7.699878 ACCACAAACCTCTCTCCTTATTAATT 58.300 34.615 0.00 0.00 0.00 1.40
474 475 8.832735 ACCACAAACCTCTCTCCTTATTAATTA 58.167 33.333 0.00 0.00 0.00 1.40
475 476 9.331282 CCACAAACCTCTCTCCTTATTAATTAG 57.669 37.037 0.00 0.00 0.00 1.73
476 477 8.831550 CACAAACCTCTCTCCTTATTAATTAGC 58.168 37.037 0.00 0.00 0.00 3.09
477 478 8.773216 ACAAACCTCTCTCCTTATTAATTAGCT 58.227 33.333 0.00 0.00 0.00 3.32
478 479 9.050601 CAAACCTCTCTCCTTATTAATTAGCTG 57.949 37.037 0.00 0.00 0.00 4.24
479 480 6.764379 ACCTCTCTCCTTATTAATTAGCTGC 58.236 40.000 0.00 0.00 0.00 5.25
480 481 6.169800 CCTCTCTCCTTATTAATTAGCTGCC 58.830 44.000 0.00 0.00 0.00 4.85
481 482 6.239714 CCTCTCTCCTTATTAATTAGCTGCCA 60.240 42.308 0.00 0.00 0.00 4.92
482 483 6.525629 TCTCTCCTTATTAATTAGCTGCCAC 58.474 40.000 0.00 0.00 0.00 5.01
483 484 6.099701 TCTCTCCTTATTAATTAGCTGCCACA 59.900 38.462 0.00 0.00 0.00 4.17
484 485 6.841601 TCTCCTTATTAATTAGCTGCCACAT 58.158 36.000 0.00 0.00 0.00 3.21
485 486 7.973402 TCTCCTTATTAATTAGCTGCCACATA 58.027 34.615 0.00 0.00 0.00 2.29
486 487 8.436778 TCTCCTTATTAATTAGCTGCCACATAA 58.563 33.333 0.00 0.00 0.00 1.90
487 488 8.988546 TCCTTATTAATTAGCTGCCACATAAA 57.011 30.769 0.00 0.00 0.00 1.40
488 489 8.846211 TCCTTATTAATTAGCTGCCACATAAAC 58.154 33.333 0.00 0.00 0.00 2.01
489 490 8.629158 CCTTATTAATTAGCTGCCACATAAACA 58.371 33.333 0.00 0.00 0.00 2.83
493 494 6.780457 AATTAGCTGCCACATAAACAATCT 57.220 33.333 0.00 0.00 0.00 2.40
494 495 6.780457 ATTAGCTGCCACATAAACAATCTT 57.220 33.333 0.00 0.00 0.00 2.40
495 496 4.445452 AGCTGCCACATAAACAATCTTG 57.555 40.909 0.00 0.00 0.00 3.02
496 497 3.828451 AGCTGCCACATAAACAATCTTGT 59.172 39.130 0.00 0.00 44.72 3.16
497 498 5.009631 AGCTGCCACATAAACAATCTTGTA 58.990 37.500 0.00 0.00 41.31 2.41
498 499 5.653769 AGCTGCCACATAAACAATCTTGTAT 59.346 36.000 0.00 0.00 41.31 2.29
499 500 6.153340 AGCTGCCACATAAACAATCTTGTATT 59.847 34.615 0.00 0.00 41.31 1.89
500 501 6.254157 GCTGCCACATAAACAATCTTGTATTG 59.746 38.462 0.00 0.00 41.31 1.90
501 502 7.459795 TGCCACATAAACAATCTTGTATTGA 57.540 32.000 4.82 0.00 41.31 2.57
502 503 7.890515 TGCCACATAAACAATCTTGTATTGAA 58.109 30.769 4.82 0.00 41.31 2.69
503 504 8.363390 TGCCACATAAACAATCTTGTATTGAAA 58.637 29.630 4.82 0.00 41.31 2.69
504 505 9.369904 GCCACATAAACAATCTTGTATTGAAAT 57.630 29.630 4.82 0.00 41.31 2.17
511 512 9.985730 AAACAATCTTGTATTGAAATGTGTGAT 57.014 25.926 4.82 0.00 41.31 3.06
512 513 8.975410 ACAATCTTGTATTGAAATGTGTGATG 57.025 30.769 4.82 0.00 40.16 3.07
513 514 8.579006 ACAATCTTGTATTGAAATGTGTGATGT 58.421 29.630 4.82 0.00 40.16 3.06
514 515 9.414295 CAATCTTGTATTGAAATGTGTGATGTT 57.586 29.630 0.00 0.00 0.00 2.71
517 518 9.283768 TCTTGTATTGAAATGTGTGATGTTACT 57.716 29.630 0.00 0.00 0.00 2.24
520 521 9.719355 TGTATTGAAATGTGTGATGTTACTAGT 57.281 29.630 0.00 0.00 0.00 2.57
525 526 9.772973 TGAAATGTGTGATGTTACTAGTTAAGT 57.227 29.630 0.00 0.00 42.62 2.24
530 531 9.903682 TGTGTGATGTTACTAGTTAAGTTACTC 57.096 33.333 0.00 0.00 38.33 2.59
531 532 9.351570 GTGTGATGTTACTAGTTAAGTTACTCC 57.648 37.037 0.00 0.00 38.33 3.85
532 533 8.526147 TGTGATGTTACTAGTTAAGTTACTCCC 58.474 37.037 0.00 0.00 38.33 4.30
533 534 8.526147 GTGATGTTACTAGTTAAGTTACTCCCA 58.474 37.037 0.00 0.00 38.33 4.37
534 535 9.263446 TGATGTTACTAGTTAAGTTACTCCCAT 57.737 33.333 0.00 0.00 38.33 4.00
536 537 9.886132 ATGTTACTAGTTAAGTTACTCCCATTG 57.114 33.333 0.00 0.00 38.33 2.82
537 538 8.873144 TGTTACTAGTTAAGTTACTCCCATTGT 58.127 33.333 0.00 0.00 38.33 2.71
538 539 9.148104 GTTACTAGTTAAGTTACTCCCATTGTG 57.852 37.037 0.00 0.00 39.80 3.33
539 540 7.549147 ACTAGTTAAGTTACTCCCATTGTGA 57.451 36.000 0.00 0.00 33.35 3.58
540 541 7.384477 ACTAGTTAAGTTACTCCCATTGTGAC 58.616 38.462 0.00 0.00 33.35 3.67
541 542 6.435292 AGTTAAGTTACTCCCATTGTGACT 57.565 37.500 0.00 0.00 36.11 3.41
542 543 7.549147 AGTTAAGTTACTCCCATTGTGACTA 57.451 36.000 0.00 0.00 33.98 2.59
543 544 7.612677 AGTTAAGTTACTCCCATTGTGACTAG 58.387 38.462 0.00 0.00 33.98 2.57
544 545 7.234988 AGTTAAGTTACTCCCATTGTGACTAGT 59.765 37.037 0.00 0.00 33.98 2.57
545 546 5.662674 AGTTACTCCCATTGTGACTAGTC 57.337 43.478 16.32 16.32 33.46 2.59
546 547 5.334421 AGTTACTCCCATTGTGACTAGTCT 58.666 41.667 23.01 0.19 33.46 3.24
547 548 6.491383 AGTTACTCCCATTGTGACTAGTCTA 58.509 40.000 23.01 10.02 33.46 2.59
548 549 6.952358 AGTTACTCCCATTGTGACTAGTCTAA 59.048 38.462 23.01 17.50 33.46 2.10
549 550 5.923733 ACTCCCATTGTGACTAGTCTAAG 57.076 43.478 23.01 10.79 0.00 2.18
582 583 8.141909 GGGTTGCATTTTTCTCTTTTAACTACT 58.858 33.333 0.00 0.00 0.00 2.57
610 611 4.798387 CACCCACTTAAAAATCGCTAATGC 59.202 41.667 0.00 0.00 0.00 3.56
612 613 5.185056 ACCCACTTAAAAATCGCTAATGCTT 59.815 36.000 0.00 0.00 36.97 3.91
615 616 7.920682 CCCACTTAAAAATCGCTAATGCTTATT 59.079 33.333 0.00 0.00 36.97 1.40
616 617 9.944663 CCACTTAAAAATCGCTAATGCTTATTA 57.055 29.630 0.00 0.00 36.97 0.98
624 625 9.831737 AAATCGCTAATGCTTATTACAATCATC 57.168 29.630 0.00 0.00 36.97 2.92
625 626 8.783833 ATCGCTAATGCTTATTACAATCATCT 57.216 30.769 0.00 0.00 36.97 2.90
653 654 6.628919 TCACCATTGACAATCATCATCATC 57.371 37.500 0.00 0.00 0.00 2.92
654 655 6.362248 TCACCATTGACAATCATCATCATCT 58.638 36.000 0.00 0.00 0.00 2.90
655 656 6.831868 TCACCATTGACAATCATCATCATCTT 59.168 34.615 0.00 0.00 0.00 2.40
656 657 7.012989 TCACCATTGACAATCATCATCATCTTC 59.987 37.037 0.00 0.00 0.00 2.87
657 658 6.831868 ACCATTGACAATCATCATCATCTTCA 59.168 34.615 0.00 0.00 0.00 3.02
658 659 7.139392 CCATTGACAATCATCATCATCTTCAC 58.861 38.462 0.00 0.00 0.00 3.18
659 660 5.978934 TGACAATCATCATCATCTTCACG 57.021 39.130 0.00 0.00 0.00 4.35
660 661 5.663456 TGACAATCATCATCATCTTCACGA 58.337 37.500 0.00 0.00 0.00 4.35
661 662 6.108015 TGACAATCATCATCATCTTCACGAA 58.892 36.000 0.00 0.00 0.00 3.85
662 663 6.036408 TGACAATCATCATCATCTTCACGAAC 59.964 38.462 0.00 0.00 0.00 3.95
663 664 5.006068 ACAATCATCATCATCTTCACGAACG 59.994 40.000 0.00 0.00 0.00 3.95
664 665 2.860136 TCATCATCATCTTCACGAACGC 59.140 45.455 0.00 0.00 0.00 4.84
665 666 1.640428 TCATCATCTTCACGAACGCC 58.360 50.000 0.00 0.00 0.00 5.68
666 667 0.652592 CATCATCTTCACGAACGCCC 59.347 55.000 0.00 0.00 0.00 6.13
667 668 0.537188 ATCATCTTCACGAACGCCCT 59.463 50.000 0.00 0.00 0.00 5.19
668 669 0.108804 TCATCTTCACGAACGCCCTC 60.109 55.000 0.00 0.00 0.00 4.30
669 670 0.108615 CATCTTCACGAACGCCCTCT 60.109 55.000 0.00 0.00 0.00 3.69
670 671 0.108615 ATCTTCACGAACGCCCTCTG 60.109 55.000 0.00 0.00 0.00 3.35
671 672 1.176619 TCTTCACGAACGCCCTCTGA 61.177 55.000 0.00 0.00 0.00 3.27
672 673 1.006571 TTCACGAACGCCCTCTGAC 60.007 57.895 0.00 0.00 0.00 3.51
673 674 1.461091 TTCACGAACGCCCTCTGACT 61.461 55.000 0.00 0.00 0.00 3.41
829 841 2.307980 TCTTCTTCCTCGACCTCCACTA 59.692 50.000 0.00 0.00 0.00 2.74
857 870 2.594303 CACTCCAACCAAGGCGCA 60.594 61.111 10.83 0.00 0.00 6.09
1189 1204 2.096013 GCGCCATCAAACCTTCTTACTC 59.904 50.000 0.00 0.00 0.00 2.59
1214 1229 1.077828 TCTCCCTCCTCTGCTTCTTGA 59.922 52.381 0.00 0.00 0.00 3.02
1260 1275 1.002087 CTGTTAGTCCGCCCAAGACTT 59.998 52.381 0.00 0.00 41.87 3.01
1287 1302 4.836825 CTTTGAACCATCTCTCCTGCTAA 58.163 43.478 0.00 0.00 0.00 3.09
1342 1357 7.389330 TCTTTATTTGATTGTTCTTGGCTCGTA 59.611 33.333 0.00 0.00 0.00 3.43
1451 1467 5.700373 GCCATGTTTGAAAAATAAAGGCTCA 59.300 36.000 1.76 0.00 35.63 4.26
1538 1554 1.428448 CGCGGTGAAGATCAAGAACA 58.572 50.000 0.00 0.00 0.00 3.18
1587 1603 1.353091 ACAACACTTCTCTCCCTCCC 58.647 55.000 0.00 0.00 0.00 4.30
1590 1606 0.252467 ACACTTCTCTCCCTCCCCTG 60.252 60.000 0.00 0.00 0.00 4.45
1591 1607 1.306568 ACTTCTCTCCCTCCCCTGC 60.307 63.158 0.00 0.00 0.00 4.85
1593 1609 0.263172 CTTCTCTCCCTCCCCTGCTA 59.737 60.000 0.00 0.00 0.00 3.49
1611 1627 7.461749 CCCTGCTATCTTCATTAAATTAGGGA 58.538 38.462 0.00 0.00 41.94 4.20
1649 1930 8.613922 AGTCCTTCAATGAATTAAATCCCATT 57.386 30.769 0.00 0.00 0.00 3.16
1726 2009 9.567848 GGTTTGATGTAACAATAATAAGGTGTG 57.432 33.333 0.00 0.00 0.00 3.82
1856 2139 3.071874 AGCTACAGGTAATGCAAAGCA 57.928 42.857 0.00 0.00 44.86 3.91
1891 2174 8.610896 CCTTTGATGTGCATTTCTTTGTTTTTA 58.389 29.630 0.00 0.00 0.00 1.52
2055 2338 6.828785 GGAGTATGTTCCAGAATTGGTATGTT 59.171 38.462 0.00 0.00 45.26 2.71
2070 2353 3.576550 GGTATGTTCTTTTGCCCCTTGAA 59.423 43.478 0.00 0.00 0.00 2.69
2187 2502 4.276678 CAGAAAGATCAGGTTGCAGTTGAA 59.723 41.667 0.00 0.00 0.00 2.69
2253 2568 1.555075 GTAAGTGACATCAGAGCCCCA 59.445 52.381 0.00 0.00 0.00 4.96
2275 2590 3.733337 TCTTTTCTCTTGCTTTCGCTCT 58.267 40.909 0.00 0.00 36.97 4.09
2284 2599 2.404215 TGCTTTCGCTCTGAGTACAAC 58.596 47.619 6.53 0.00 36.97 3.32
2420 2735 0.980423 AGAAGCCTCCAGAAGACACC 59.020 55.000 0.00 0.00 0.00 4.16
2519 2834 4.844884 AGTCCAGTCTTTTACTAATGCCC 58.155 43.478 0.00 0.00 35.76 5.36
2520 2835 3.621715 GTCCAGTCTTTTACTAATGCCCG 59.378 47.826 0.00 0.00 35.76 6.13
2521 2836 3.516300 TCCAGTCTTTTACTAATGCCCGA 59.484 43.478 0.00 0.00 35.76 5.14
2522 2837 3.871594 CCAGTCTTTTACTAATGCCCGAG 59.128 47.826 0.00 0.00 35.76 4.63
2523 2838 4.382685 CCAGTCTTTTACTAATGCCCGAGA 60.383 45.833 0.00 0.00 35.76 4.04
2524 2839 4.806247 CAGTCTTTTACTAATGCCCGAGAG 59.194 45.833 0.00 0.00 35.76 3.20
2525 2840 3.556365 GTCTTTTACTAATGCCCGAGAGC 59.444 47.826 0.00 0.00 0.00 4.09
2699 3015 1.000506 TGGTTTTAGCTCTCGCGAACT 59.999 47.619 11.33 10.74 42.32 3.01
2702 3018 3.303760 GGTTTTAGCTCTCGCGAACTAAG 59.696 47.826 11.33 6.68 42.32 2.18
2747 3063 0.399233 AGCTTCTTCCTCGGCCCTAT 60.399 55.000 0.00 0.00 0.00 2.57
2844 3160 5.446143 TGTGTGATTGTGTTACATTTCCC 57.554 39.130 0.00 0.00 0.00 3.97
2949 3265 4.881019 AGTTCTCTGCTCATGTTACACT 57.119 40.909 0.00 0.00 0.00 3.55
2981 3297 5.449177 GGATCAACATGTTTAGGCAGCTAAC 60.449 44.000 8.77 0.00 0.00 2.34
3040 3356 6.082031 TCATCCGGGGAATCTTTCTCTAATA 58.918 40.000 0.00 0.00 0.00 0.98
3041 3357 6.211584 TCATCCGGGGAATCTTTCTCTAATAG 59.788 42.308 0.00 0.00 0.00 1.73
3042 3358 5.464984 TCCGGGGAATCTTTCTCTAATAGT 58.535 41.667 0.00 0.00 0.00 2.12
3077 3398 6.542370 CCCCAACAAAATAGTAGATACAGTGG 59.458 42.308 0.00 0.00 0.00 4.00
3123 3444 5.805486 TCATGTCGTACTATTGAGCACTTTC 59.195 40.000 0.00 0.00 0.00 2.62
3215 3536 2.097110 TTGTCCACCTGACCTGTACT 57.903 50.000 0.00 0.00 43.78 2.73
3256 3577 6.737720 TCCTTTGCTGATATGATCTGTACT 57.262 37.500 0.00 0.00 0.00 2.73
3257 3578 7.839680 TCCTTTGCTGATATGATCTGTACTA 57.160 36.000 0.00 0.00 0.00 1.82
3258 3579 7.661968 TCCTTTGCTGATATGATCTGTACTAC 58.338 38.462 0.00 0.00 0.00 2.73
3357 3678 7.387119 TGATAATGATGGAGCATTATTCAGC 57.613 36.000 10.60 1.06 46.18 4.26
3401 3722 5.279106 CCTGTTGCTTTCTTGGAATTCATGA 60.279 40.000 7.93 0.00 0.00 3.07
3456 3777 2.158885 GGCCAGATAGACCCTTGACTTC 60.159 54.545 0.00 0.00 0.00 3.01
3480 3801 0.675633 GCTGAATGGGTGCAACTTGT 59.324 50.000 0.00 0.00 36.74 3.16
3481 3802 1.603678 GCTGAATGGGTGCAACTTGTG 60.604 52.381 0.00 0.00 36.74 3.33
3482 3803 1.955778 CTGAATGGGTGCAACTTGTGA 59.044 47.619 0.00 0.00 36.74 3.58
3483 3804 1.955778 TGAATGGGTGCAACTTGTGAG 59.044 47.619 0.00 0.00 36.74 3.51
3507 3828 2.806745 GCTTCTGCCACTTGTACTCACA 60.807 50.000 0.00 0.00 0.00 3.58
3569 3890 5.408604 CGGTGTAATATTCTAGGGAATGTGC 59.591 44.000 0.00 0.00 41.66 4.57
3583 3904 4.111916 GGAATGTGCGTATTTCCATTTGG 58.888 43.478 11.55 0.00 0.00 3.28
3599 3920 6.358178 TCCATTTGGCGTGACCTTTATTATA 58.642 36.000 0.00 0.00 40.22 0.98
3618 3939 0.772124 ATGTGGAGGGTGGTGGTCTT 60.772 55.000 0.00 0.00 0.00 3.01
3625 3946 0.185175 GGGTGGTGGTCTTTTGGACT 59.815 55.000 0.00 0.00 43.97 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 1.596934 GGTCACATCGAAGCAGGGA 59.403 57.895 0.00 0.00 0.00 4.20
62 63 0.748729 AAAAACCCTGGCGTCGTTGA 60.749 50.000 0.00 0.00 0.00 3.18
96 97 4.314440 AAGAAGCCGCCGTCTGCA 62.314 61.111 0.00 0.00 41.33 4.41
131 132 1.593196 ATTGACCACGTGTTGACCAG 58.407 50.000 15.65 0.00 0.00 4.00
136 137 2.727607 CGCCATTATTGACCACGTGTTG 60.728 50.000 15.65 2.14 0.00 3.33
142 143 1.260561 CTACGCGCCATTATTGACCAC 59.739 52.381 5.73 0.00 0.00 4.16
150 151 0.458260 TGAGCTTCTACGCGCCATTA 59.542 50.000 5.73 0.00 34.40 1.90
153 154 1.736645 GTTGAGCTTCTACGCGCCA 60.737 57.895 5.73 0.00 34.40 5.69
162 163 0.937304 TGTTGAGCGTGTTGAGCTTC 59.063 50.000 0.00 0.00 46.13 3.86
187 188 5.824904 ATACGACAAGACGTGGTTATACT 57.175 39.130 7.76 0.00 46.02 2.12
194 195 3.611113 CCACTAAATACGACAAGACGTGG 59.389 47.826 7.76 0.00 46.02 4.94
197 198 2.601763 GGCCACTAAATACGACAAGACG 59.398 50.000 0.00 0.00 39.31 4.18
198 199 2.601763 CGGCCACTAAATACGACAAGAC 59.398 50.000 2.24 0.00 0.00 3.01
200 201 2.613691 ACGGCCACTAAATACGACAAG 58.386 47.619 2.24 0.00 0.00 3.16
201 202 2.747396 ACGGCCACTAAATACGACAA 57.253 45.000 2.24 0.00 0.00 3.18
203 204 3.492011 CCATTACGGCCACTAAATACGAC 59.508 47.826 2.24 0.00 0.00 4.34
204 205 3.384146 TCCATTACGGCCACTAAATACGA 59.616 43.478 2.24 0.00 33.14 3.43
206 207 5.061179 ACATCCATTACGGCCACTAAATAC 58.939 41.667 2.24 0.00 33.14 1.89
207 208 5.298989 ACATCCATTACGGCCACTAAATA 57.701 39.130 2.24 0.00 33.14 1.40
249 250 0.678366 TGTGTCGTGTGCCCACTTTT 60.678 50.000 0.00 0.00 39.55 2.27
256 257 2.033151 GTCTTAACTTGTGTCGTGTGCC 60.033 50.000 0.00 0.00 0.00 5.01
276 277 2.725127 TACTCCCCACCGTGAGCAGT 62.725 60.000 0.00 1.19 31.65 4.40
277 278 1.541310 TTACTCCCCACCGTGAGCAG 61.541 60.000 0.00 0.00 31.65 4.24
278 279 0.907704 ATTACTCCCCACCGTGAGCA 60.908 55.000 0.00 0.00 31.65 4.26
279 280 1.117150 TATTACTCCCCACCGTGAGC 58.883 55.000 0.00 0.00 31.65 4.26
280 281 4.404640 TCTATATTACTCCCCACCGTGAG 58.595 47.826 0.00 0.00 34.73 3.51
281 282 4.141088 ACTCTATATTACTCCCCACCGTGA 60.141 45.833 0.00 0.00 0.00 4.35
282 283 4.150359 ACTCTATATTACTCCCCACCGTG 58.850 47.826 0.00 0.00 0.00 4.94
283 284 4.466255 ACTCTATATTACTCCCCACCGT 57.534 45.455 0.00 0.00 0.00 4.83
284 285 5.568392 ACTACTCTATATTACTCCCCACCG 58.432 45.833 0.00 0.00 0.00 4.94
285 286 8.169393 AGTTACTACTCTATATTACTCCCCACC 58.831 40.741 0.00 0.00 0.00 4.61
286 287 9.585369 AAGTTACTACTCTATATTACTCCCCAC 57.415 37.037 0.00 0.00 31.99 4.61
287 288 9.584008 CAAGTTACTACTCTATATTACTCCCCA 57.416 37.037 0.00 0.00 31.99 4.96
288 289 8.522003 GCAAGTTACTACTCTATATTACTCCCC 58.478 40.741 0.00 0.00 31.99 4.81
289 290 8.522003 GGCAAGTTACTACTCTATATTACTCCC 58.478 40.741 0.00 0.00 31.99 4.30
290 291 8.235905 CGGCAAGTTACTACTCTATATTACTCC 58.764 40.741 0.00 0.00 31.99 3.85
291 292 8.997323 TCGGCAAGTTACTACTCTATATTACTC 58.003 37.037 0.00 0.00 31.99 2.59
292 293 8.915057 TCGGCAAGTTACTACTCTATATTACT 57.085 34.615 0.00 0.00 31.99 2.24
293 294 9.557338 CATCGGCAAGTTACTACTCTATATTAC 57.443 37.037 0.00 0.00 31.99 1.89
294 295 9.293404 ACATCGGCAAGTTACTACTCTATATTA 57.707 33.333 0.00 0.00 31.99 0.98
295 296 8.179509 ACATCGGCAAGTTACTACTCTATATT 57.820 34.615 0.00 0.00 31.99 1.28
296 297 7.762588 ACATCGGCAAGTTACTACTCTATAT 57.237 36.000 0.00 0.00 31.99 0.86
297 298 7.578310 AACATCGGCAAGTTACTACTCTATA 57.422 36.000 0.00 0.00 31.99 1.31
298 299 6.466885 AACATCGGCAAGTTACTACTCTAT 57.533 37.500 0.00 0.00 31.99 1.98
299 300 5.909621 AACATCGGCAAGTTACTACTCTA 57.090 39.130 0.00 0.00 31.99 2.43
300 301 4.803098 AACATCGGCAAGTTACTACTCT 57.197 40.909 0.00 0.00 31.99 3.24
301 302 5.945775 GTAACATCGGCAAGTTACTACTC 57.054 43.478 13.39 0.00 44.04 2.59
306 307 5.515626 CAGACTAGTAACATCGGCAAGTTAC 59.484 44.000 12.99 12.99 46.42 2.50
307 308 5.184479 ACAGACTAGTAACATCGGCAAGTTA 59.816 40.000 0.00 0.00 0.00 2.24
308 309 4.021368 ACAGACTAGTAACATCGGCAAGTT 60.021 41.667 0.00 0.00 0.00 2.66
309 310 3.510360 ACAGACTAGTAACATCGGCAAGT 59.490 43.478 0.00 0.00 0.00 3.16
310 311 3.859961 CACAGACTAGTAACATCGGCAAG 59.140 47.826 0.00 0.00 0.00 4.01
311 312 3.257375 ACACAGACTAGTAACATCGGCAA 59.743 43.478 0.00 0.00 0.00 4.52
312 313 2.823747 ACACAGACTAGTAACATCGGCA 59.176 45.455 0.00 0.00 0.00 5.69
313 314 3.505464 ACACAGACTAGTAACATCGGC 57.495 47.619 0.00 0.00 0.00 5.54
314 315 6.192234 AGTAACACAGACTAGTAACATCGG 57.808 41.667 0.00 0.00 0.00 4.18
315 316 7.065563 AGGTAGTAACACAGACTAGTAACATCG 59.934 40.741 0.00 0.00 30.08 3.84
316 317 8.278729 AGGTAGTAACACAGACTAGTAACATC 57.721 38.462 0.00 0.00 30.08 3.06
317 318 7.338957 GGAGGTAGTAACACAGACTAGTAACAT 59.661 40.741 0.00 0.00 30.08 2.71
318 319 6.656693 GGAGGTAGTAACACAGACTAGTAACA 59.343 42.308 0.00 0.00 30.08 2.41
319 320 6.656693 TGGAGGTAGTAACACAGACTAGTAAC 59.343 42.308 0.00 0.00 30.08 2.50
320 321 6.782986 TGGAGGTAGTAACACAGACTAGTAA 58.217 40.000 0.00 0.00 30.08 2.24
321 322 6.378661 TGGAGGTAGTAACACAGACTAGTA 57.621 41.667 0.00 0.00 30.08 1.82
322 323 5.252586 TGGAGGTAGTAACACAGACTAGT 57.747 43.478 0.00 0.00 30.08 2.57
323 324 7.012515 CACTATGGAGGTAGTAACACAGACTAG 59.987 44.444 0.00 0.00 33.29 2.57
324 325 6.827251 CACTATGGAGGTAGTAACACAGACTA 59.173 42.308 0.00 0.00 33.29 2.59
325 326 5.652891 CACTATGGAGGTAGTAACACAGACT 59.347 44.000 0.00 0.00 33.29 3.24
326 327 5.163540 CCACTATGGAGGTAGTAACACAGAC 60.164 48.000 0.00 0.00 40.96 3.51
327 328 4.954202 CCACTATGGAGGTAGTAACACAGA 59.046 45.833 0.00 0.00 40.96 3.41
328 329 4.954202 TCCACTATGGAGGTAGTAACACAG 59.046 45.833 0.00 0.00 42.67 3.66
329 330 4.938028 TCCACTATGGAGGTAGTAACACA 58.062 43.478 0.00 0.00 42.67 3.72
342 343 8.253810 CCACTCATATGTTACTATCCACTATGG 58.746 40.741 1.90 0.00 39.43 2.74
343 344 8.807118 ACCACTCATATGTTACTATCCACTATG 58.193 37.037 1.90 0.00 0.00 2.23
344 345 8.958060 ACCACTCATATGTTACTATCCACTAT 57.042 34.615 1.90 0.00 0.00 2.12
346 347 8.958060 ATACCACTCATATGTTACTATCCACT 57.042 34.615 1.90 0.00 0.00 4.00
347 348 8.803235 TGATACCACTCATATGTTACTATCCAC 58.197 37.037 1.90 0.00 0.00 4.02
348 349 8.950007 TGATACCACTCATATGTTACTATCCA 57.050 34.615 1.90 0.00 0.00 3.41
349 350 9.809096 CATGATACCACTCATATGTTACTATCC 57.191 37.037 1.90 0.00 34.11 2.59
353 354 9.770097 CTTTCATGATACCACTCATATGTTACT 57.230 33.333 1.90 0.00 34.11 2.24
354 355 9.764363 TCTTTCATGATACCACTCATATGTTAC 57.236 33.333 1.90 0.00 34.11 2.50
356 357 9.857656 AATCTTTCATGATACCACTCATATGTT 57.142 29.630 1.90 0.00 34.11 2.71
357 358 9.857656 AAATCTTTCATGATACCACTCATATGT 57.142 29.630 1.90 0.00 34.11 2.29
393 394 6.042638 TCAAGGCATAATGAGTCTATAGCC 57.957 41.667 0.00 0.00 41.08 3.93
394 395 7.969536 TTTCAAGGCATAATGAGTCTATAGC 57.030 36.000 0.00 0.00 0.00 2.97
395 396 9.499479 ACATTTCAAGGCATAATGAGTCTATAG 57.501 33.333 0.00 0.00 34.28 1.31
396 397 9.276590 CACATTTCAAGGCATAATGAGTCTATA 57.723 33.333 0.00 0.00 34.28 1.31
397 398 7.776969 ACACATTTCAAGGCATAATGAGTCTAT 59.223 33.333 0.00 0.00 30.71 1.98
398 399 7.066163 CACACATTTCAAGGCATAATGAGTCTA 59.934 37.037 0.00 0.00 33.04 2.59
399 400 5.948162 ACACATTTCAAGGCATAATGAGTCT 59.052 36.000 0.00 0.00 30.71 3.24
400 401 6.032094 CACACATTTCAAGGCATAATGAGTC 58.968 40.000 0.00 0.00 33.04 3.36
401 402 5.711506 TCACACATTTCAAGGCATAATGAGT 59.288 36.000 0.00 0.00 34.77 3.41
402 403 6.198650 TCACACATTTCAAGGCATAATGAG 57.801 37.500 0.00 0.00 34.28 2.90
403 404 6.153170 ACATCACACATTTCAAGGCATAATGA 59.847 34.615 0.00 0.00 34.28 2.57
404 405 6.334989 ACATCACACATTTCAAGGCATAATG 58.665 36.000 0.00 0.00 35.82 1.90
405 406 6.534475 ACATCACACATTTCAAGGCATAAT 57.466 33.333 0.00 0.00 0.00 1.28
406 407 5.981088 ACATCACACATTTCAAGGCATAA 57.019 34.783 0.00 0.00 0.00 1.90
407 408 5.981088 AACATCACACATTTCAAGGCATA 57.019 34.783 0.00 0.00 0.00 3.14
408 409 4.877378 AACATCACACATTTCAAGGCAT 57.123 36.364 0.00 0.00 0.00 4.40
409 410 4.582240 TGTAACATCACACATTTCAAGGCA 59.418 37.500 0.00 0.00 0.00 4.75
410 411 5.119931 TGTAACATCACACATTTCAAGGC 57.880 39.130 0.00 0.00 0.00 4.35
411 412 6.317789 ACTGTAACATCACACATTTCAAGG 57.682 37.500 0.00 0.00 0.00 3.61
412 413 8.559536 AGTTACTGTAACATCACACATTTCAAG 58.440 33.333 27.12 0.00 41.07 3.02
413 414 8.445275 AGTTACTGTAACATCACACATTTCAA 57.555 30.769 27.12 0.00 41.07 2.69
414 415 8.984764 GTAGTTACTGTAACATCACACATTTCA 58.015 33.333 27.12 0.00 41.07 2.69
415 416 8.440833 GGTAGTTACTGTAACATCACACATTTC 58.559 37.037 27.12 6.28 41.07 2.17
416 417 8.154856 AGGTAGTTACTGTAACATCACACATTT 58.845 33.333 27.12 9.43 41.07 2.32
417 418 7.676947 AGGTAGTTACTGTAACATCACACATT 58.323 34.615 27.12 10.04 41.07 2.71
418 419 7.241042 AGGTAGTTACTGTAACATCACACAT 57.759 36.000 27.12 13.91 41.07 3.21
419 420 6.659745 AGGTAGTTACTGTAACATCACACA 57.340 37.500 27.12 5.66 41.07 3.72
420 421 8.302438 ACTTAGGTAGTTACTGTAACATCACAC 58.698 37.037 27.12 17.04 41.07 3.82
421 422 8.413309 ACTTAGGTAGTTACTGTAACATCACA 57.587 34.615 27.12 10.61 41.07 3.58
434 435 7.510343 AGAGGTTTGTGGTAACTTAGGTAGTTA 59.490 37.037 0.00 0.00 45.22 2.24
436 437 5.842874 AGAGGTTTGTGGTAACTTAGGTAGT 59.157 40.000 0.00 0.00 39.32 2.73
437 438 6.210984 AGAGAGGTTTGTGGTAACTTAGGTAG 59.789 42.308 0.00 0.00 37.61 3.18
438 439 6.080009 AGAGAGGTTTGTGGTAACTTAGGTA 58.920 40.000 0.00 0.00 37.61 3.08
439 440 4.906060 AGAGAGGTTTGTGGTAACTTAGGT 59.094 41.667 0.00 0.00 37.61 3.08
440 441 5.480205 GAGAGAGGTTTGTGGTAACTTAGG 58.520 45.833 0.00 0.00 37.61 2.69
441 442 5.246429 AGGAGAGAGGTTTGTGGTAACTTAG 59.754 44.000 0.00 0.00 37.61 2.18
442 443 5.152934 AGGAGAGAGGTTTGTGGTAACTTA 58.847 41.667 0.00 0.00 37.61 2.24
443 444 3.974642 AGGAGAGAGGTTTGTGGTAACTT 59.025 43.478 0.00 0.00 37.61 2.66
444 445 3.588569 AGGAGAGAGGTTTGTGGTAACT 58.411 45.455 0.00 0.00 37.61 2.24
445 446 4.353383 AAGGAGAGAGGTTTGTGGTAAC 57.647 45.455 0.00 0.00 0.00 2.50
446 447 6.697641 AATAAGGAGAGAGGTTTGTGGTAA 57.302 37.500 0.00 0.00 0.00 2.85
447 448 7.801893 TTAATAAGGAGAGAGGTTTGTGGTA 57.198 36.000 0.00 0.00 0.00 3.25
448 449 6.697641 TTAATAAGGAGAGAGGTTTGTGGT 57.302 37.500 0.00 0.00 0.00 4.16
449 450 9.331282 CTAATTAATAAGGAGAGAGGTTTGTGG 57.669 37.037 0.00 0.00 0.00 4.17
450 451 8.831550 GCTAATTAATAAGGAGAGAGGTTTGTG 58.168 37.037 0.00 0.00 0.00 3.33
451 452 8.773216 AGCTAATTAATAAGGAGAGAGGTTTGT 58.227 33.333 0.00 0.00 0.00 2.83
452 453 9.050601 CAGCTAATTAATAAGGAGAGAGGTTTG 57.949 37.037 0.00 0.00 0.00 2.93
453 454 7.717436 GCAGCTAATTAATAAGGAGAGAGGTTT 59.283 37.037 0.00 0.00 0.00 3.27
454 455 7.220740 GCAGCTAATTAATAAGGAGAGAGGTT 58.779 38.462 0.00 0.00 0.00 3.50
455 456 6.239743 GGCAGCTAATTAATAAGGAGAGAGGT 60.240 42.308 0.00 0.00 0.00 3.85
456 457 6.169800 GGCAGCTAATTAATAAGGAGAGAGG 58.830 44.000 0.00 0.00 0.00 3.69
457 458 6.648725 GTGGCAGCTAATTAATAAGGAGAGAG 59.351 42.308 0.00 0.00 0.00 3.20
458 459 6.099701 TGTGGCAGCTAATTAATAAGGAGAGA 59.900 38.462 0.00 0.00 0.00 3.10
459 460 6.291377 TGTGGCAGCTAATTAATAAGGAGAG 58.709 40.000 0.00 0.00 0.00 3.20
460 461 6.247229 TGTGGCAGCTAATTAATAAGGAGA 57.753 37.500 0.00 0.00 0.00 3.71
461 462 8.621532 TTATGTGGCAGCTAATTAATAAGGAG 57.378 34.615 0.00 0.00 0.00 3.69
462 463 8.846211 GTTTATGTGGCAGCTAATTAATAAGGA 58.154 33.333 0.00 0.00 0.00 3.36
463 464 8.629158 TGTTTATGTGGCAGCTAATTAATAAGG 58.371 33.333 0.00 0.00 0.00 2.69
467 468 8.917088 AGATTGTTTATGTGGCAGCTAATTAAT 58.083 29.630 0.00 0.00 0.00 1.40
468 469 8.292444 AGATTGTTTATGTGGCAGCTAATTAA 57.708 30.769 0.00 0.00 0.00 1.40
469 470 7.880160 AGATTGTTTATGTGGCAGCTAATTA 57.120 32.000 0.00 0.00 0.00 1.40
470 471 6.780457 AGATTGTTTATGTGGCAGCTAATT 57.220 33.333 0.00 0.00 0.00 1.40
471 472 6.153340 ACAAGATTGTTTATGTGGCAGCTAAT 59.847 34.615 0.00 0.00 38.47 1.73
472 473 5.476599 ACAAGATTGTTTATGTGGCAGCTAA 59.523 36.000 0.00 0.00 38.47 3.09
473 474 5.009631 ACAAGATTGTTTATGTGGCAGCTA 58.990 37.500 0.00 0.00 38.47 3.32
474 475 3.828451 ACAAGATTGTTTATGTGGCAGCT 59.172 39.130 0.00 0.00 38.47 4.24
475 476 4.178545 ACAAGATTGTTTATGTGGCAGC 57.821 40.909 0.00 0.00 38.47 5.25
476 477 7.537715 TCAATACAAGATTGTTTATGTGGCAG 58.462 34.615 3.14 0.00 42.35 4.85
477 478 7.459795 TCAATACAAGATTGTTTATGTGGCA 57.540 32.000 3.14 0.00 42.35 4.92
478 479 8.755696 TTTCAATACAAGATTGTTTATGTGGC 57.244 30.769 3.14 0.00 42.35 5.01
485 486 9.985730 ATCACACATTTCAATACAAGATTGTTT 57.014 25.926 3.14 0.00 42.35 2.83
486 487 9.414295 CATCACACATTTCAATACAAGATTGTT 57.586 29.630 3.14 0.00 42.35 2.83
487 488 8.579006 ACATCACACATTTCAATACAAGATTGT 58.421 29.630 3.37 3.37 44.86 2.71
488 489 8.975410 ACATCACACATTTCAATACAAGATTG 57.025 30.769 0.00 0.00 0.00 2.67
491 492 9.283768 AGTAACATCACACATTTCAATACAAGA 57.716 29.630 0.00 0.00 0.00 3.02
494 495 9.719355 ACTAGTAACATCACACATTTCAATACA 57.281 29.630 0.00 0.00 0.00 2.29
499 500 9.772973 ACTTAACTAGTAACATCACACATTTCA 57.227 29.630 0.00 0.00 34.56 2.69
504 505 9.903682 GAGTAACTTAACTAGTAACATCACACA 57.096 33.333 0.00 0.00 35.54 3.72
505 506 9.351570 GGAGTAACTTAACTAGTAACATCACAC 57.648 37.037 0.00 0.00 35.54 3.82
506 507 8.526147 GGGAGTAACTTAACTAGTAACATCACA 58.474 37.037 0.00 0.00 35.54 3.58
507 508 8.526147 TGGGAGTAACTTAACTAGTAACATCAC 58.474 37.037 0.00 0.00 35.54 3.06
508 509 8.654485 TGGGAGTAACTTAACTAGTAACATCA 57.346 34.615 0.00 0.00 35.54 3.07
510 511 9.886132 CAATGGGAGTAACTTAACTAGTAACAT 57.114 33.333 0.00 0.00 35.54 2.71
511 512 8.873144 ACAATGGGAGTAACTTAACTAGTAACA 58.127 33.333 0.00 0.00 35.54 2.41
512 513 9.148104 CACAATGGGAGTAACTTAACTAGTAAC 57.852 37.037 0.00 0.00 35.54 2.50
513 514 9.092338 TCACAATGGGAGTAACTTAACTAGTAA 57.908 33.333 0.00 0.00 35.54 2.24
514 515 8.526147 GTCACAATGGGAGTAACTTAACTAGTA 58.474 37.037 0.00 0.00 35.54 1.82
515 516 7.234988 AGTCACAATGGGAGTAACTTAACTAGT 59.765 37.037 0.00 0.00 39.32 2.57
516 517 7.612677 AGTCACAATGGGAGTAACTTAACTAG 58.387 38.462 0.00 0.00 0.00 2.57
517 518 7.549147 AGTCACAATGGGAGTAACTTAACTA 57.451 36.000 0.00 0.00 0.00 2.24
518 519 6.435292 AGTCACAATGGGAGTAACTTAACT 57.565 37.500 0.00 0.00 0.00 2.24
519 520 7.384477 ACTAGTCACAATGGGAGTAACTTAAC 58.616 38.462 1.34 0.00 0.00 2.01
520 521 7.453752 AGACTAGTCACAATGGGAGTAACTTAA 59.546 37.037 24.44 0.00 0.00 1.85
521 522 6.952358 AGACTAGTCACAATGGGAGTAACTTA 59.048 38.462 24.44 0.00 0.00 2.24
522 523 5.780793 AGACTAGTCACAATGGGAGTAACTT 59.219 40.000 24.44 0.00 0.00 2.66
523 524 5.334421 AGACTAGTCACAATGGGAGTAACT 58.666 41.667 24.44 1.97 0.00 2.24
524 525 5.662674 AGACTAGTCACAATGGGAGTAAC 57.337 43.478 24.44 0.00 0.00 2.50
525 526 6.952358 ACTTAGACTAGTCACAATGGGAGTAA 59.048 38.462 24.44 9.17 0.00 2.24
526 527 6.377429 CACTTAGACTAGTCACAATGGGAGTA 59.623 42.308 24.44 0.00 0.00 2.59
527 528 5.186021 CACTTAGACTAGTCACAATGGGAGT 59.814 44.000 24.44 12.04 0.00 3.85
528 529 5.419155 TCACTTAGACTAGTCACAATGGGAG 59.581 44.000 24.44 11.50 0.00 4.30
529 530 5.185249 GTCACTTAGACTAGTCACAATGGGA 59.815 44.000 24.44 14.12 44.09 4.37
530 531 5.411781 GTCACTTAGACTAGTCACAATGGG 58.588 45.833 24.44 12.27 44.09 4.00
544 545 1.429930 TGCAACCCCAGTCACTTAGA 58.570 50.000 0.00 0.00 0.00 2.10
545 546 2.496899 ATGCAACCCCAGTCACTTAG 57.503 50.000 0.00 0.00 0.00 2.18
546 547 2.969821 AATGCAACCCCAGTCACTTA 57.030 45.000 0.00 0.00 0.00 2.24
547 548 2.086610 AAATGCAACCCCAGTCACTT 57.913 45.000 0.00 0.00 0.00 3.16
548 549 2.086610 AAAATGCAACCCCAGTCACT 57.913 45.000 0.00 0.00 0.00 3.41
549 550 2.365293 AGAAAAATGCAACCCCAGTCAC 59.635 45.455 0.00 0.00 0.00 3.67
561 562 9.290483 GCCATAGTAGTTAAAAGAGAAAAATGC 57.710 33.333 0.00 0.00 0.00 3.56
582 583 3.129638 GCGATTTTTAAGTGGGTGCCATA 59.870 43.478 0.00 0.00 35.28 2.74
610 611 7.275183 TGGTGACTGGAGATGATTGTAATAAG 58.725 38.462 0.00 0.00 0.00 1.73
612 613 6.806668 TGGTGACTGGAGATGATTGTAATA 57.193 37.500 0.00 0.00 0.00 0.98
615 616 5.189539 TCAATGGTGACTGGAGATGATTGTA 59.810 40.000 0.00 0.00 0.00 2.41
616 617 4.019051 TCAATGGTGACTGGAGATGATTGT 60.019 41.667 0.00 0.00 0.00 2.71
618 619 4.849813 TCAATGGTGACTGGAGATGATT 57.150 40.909 0.00 0.00 0.00 2.57
649 650 0.108804 GAGGGCGTTCGTGAAGATGA 60.109 55.000 0.00 0.00 0.00 2.92
652 653 1.176619 TCAGAGGGCGTTCGTGAAGA 61.177 55.000 0.00 0.00 0.00 2.87
653 654 1.009389 GTCAGAGGGCGTTCGTGAAG 61.009 60.000 0.00 0.00 0.00 3.02
654 655 1.006571 GTCAGAGGGCGTTCGTGAA 60.007 57.895 0.00 0.00 0.00 3.18
655 656 1.901948 AGTCAGAGGGCGTTCGTGA 60.902 57.895 0.00 0.00 0.00 4.35
656 657 1.734477 CAGTCAGAGGGCGTTCGTG 60.734 63.158 0.00 0.00 0.00 4.35
657 658 2.651361 CAGTCAGAGGGCGTTCGT 59.349 61.111 0.00 0.00 0.00 3.85
658 659 2.125912 CCAGTCAGAGGGCGTTCG 60.126 66.667 0.00 0.00 0.00 3.95
659 660 0.390472 CTTCCAGTCAGAGGGCGTTC 60.390 60.000 0.00 0.00 0.00 3.95
660 661 1.674057 CTTCCAGTCAGAGGGCGTT 59.326 57.895 0.00 0.00 0.00 4.84
661 662 2.286523 CCTTCCAGTCAGAGGGCGT 61.287 63.158 0.00 0.00 0.00 5.68
662 663 1.954362 CTCCTTCCAGTCAGAGGGCG 61.954 65.000 0.00 0.00 33.12 6.13
663 664 1.621672 CCTCCTTCCAGTCAGAGGGC 61.622 65.000 0.00 0.00 41.90 5.19
664 665 2.601664 CCTCCTTCCAGTCAGAGGG 58.398 63.158 0.00 0.00 41.90 4.30
665 666 0.252467 ACCCTCCTTCCAGTCAGAGG 60.252 60.000 0.00 0.00 44.65 3.69
666 667 1.650528 AACCCTCCTTCCAGTCAGAG 58.349 55.000 0.00 0.00 0.00 3.35
667 668 3.269592 TTAACCCTCCTTCCAGTCAGA 57.730 47.619 0.00 0.00 0.00 3.27
668 669 3.328050 ACTTTAACCCTCCTTCCAGTCAG 59.672 47.826 0.00 0.00 0.00 3.51
669 670 3.072476 CACTTTAACCCTCCTTCCAGTCA 59.928 47.826 0.00 0.00 0.00 3.41
670 671 3.676093 CACTTTAACCCTCCTTCCAGTC 58.324 50.000 0.00 0.00 0.00 3.51
671 672 2.224793 GCACTTTAACCCTCCTTCCAGT 60.225 50.000 0.00 0.00 0.00 4.00
672 673 2.224769 TGCACTTTAACCCTCCTTCCAG 60.225 50.000 0.00 0.00 0.00 3.86
673 674 1.777878 TGCACTTTAACCCTCCTTCCA 59.222 47.619 0.00 0.00 0.00 3.53
857 870 4.314440 AGCGTGTGATGGTGCGGT 62.314 61.111 0.00 0.00 0.00 5.68
992 1005 3.310727 CACAGAGGCATGTGTCACA 57.689 52.632 8.40 8.40 44.49 3.58
1131 1146 1.377202 GAGCTTTGATGGCGGGTCA 60.377 57.895 0.00 0.00 34.52 4.02
1189 1204 1.864669 AGCAGAGGAGGGAGAAGAAG 58.135 55.000 0.00 0.00 0.00 2.85
1214 1229 1.079336 GGAAAGTAGAAGCCGCCGT 60.079 57.895 0.00 0.00 0.00 5.68
1260 1275 2.093973 GGAGAGATGGTTCAAAGCGAGA 60.094 50.000 0.00 0.00 0.00 4.04
1287 1302 8.042515 CCAATTCAATACAATCCAATCCAAACT 58.957 33.333 0.00 0.00 0.00 2.66
1342 1357 1.620323 GCAGGGCAACTCCAAAGATTT 59.380 47.619 0.00 0.00 36.21 2.17
1486 1502 4.519437 CCAGGCTCATCTGCGCGA 62.519 66.667 12.10 3.27 33.64 5.87
1489 1505 2.437180 TTGCCAGGCTCATCTGCG 60.437 61.111 14.15 0.00 33.64 5.18
1527 1543 4.260170 GGACTTGCTGATGTTCTTGATCT 58.740 43.478 0.00 0.00 0.00 2.75
1538 1554 0.682209 GCCACATGGGACTTGCTGAT 60.682 55.000 0.00 0.00 40.01 2.90
1587 1603 8.924511 TTCCCTAATTTAATGAAGATAGCAGG 57.075 34.615 0.00 0.00 0.00 4.85
1649 1930 4.286032 ACCACTAGCATTCAAGGTCAAGTA 59.714 41.667 0.00 0.00 0.00 2.24
1726 2009 2.870411 GGACATGCGTTCCATTAGTACC 59.130 50.000 0.00 0.00 29.71 3.34
1856 2139 5.733620 ATGCACATCAAAGGTTGAAATCT 57.266 34.783 0.00 0.00 43.95 2.40
1925 2208 3.278574 CTCCACAAACTTGAACACTGGA 58.721 45.455 0.00 0.00 30.58 3.86
2055 2338 1.036707 CGGTTTCAAGGGGCAAAAGA 58.963 50.000 0.00 0.00 0.00 2.52
2070 2353 1.002773 ACTTTAGGCGATTGGACGGTT 59.997 47.619 0.00 0.00 0.00 4.44
2141 2456 4.016113 TCATCGAACTGTGACATACGAG 57.984 45.455 12.40 6.97 33.58 4.18
2142 2457 3.730963 GCTCATCGAACTGTGACATACGA 60.731 47.826 10.14 10.14 0.00 3.43
2143 2458 2.531912 GCTCATCGAACTGTGACATACG 59.468 50.000 0.00 0.00 0.00 3.06
2144 2459 3.511699 TGCTCATCGAACTGTGACATAC 58.488 45.455 0.00 0.00 0.00 2.39
2145 2460 3.443681 TCTGCTCATCGAACTGTGACATA 59.556 43.478 0.00 0.00 0.00 2.29
2146 2461 2.232208 TCTGCTCATCGAACTGTGACAT 59.768 45.455 0.00 0.00 0.00 3.06
2187 2502 5.722021 AGAAAATAACCCGCAGAATTTGT 57.278 34.783 0.00 0.00 0.00 2.83
2275 2590 3.392947 TCCCCAGAATTGTGTTGTACTCA 59.607 43.478 1.49 0.00 0.00 3.41
2284 2599 0.609957 TGCTGCTCCCCAGAATTGTG 60.610 55.000 0.00 0.00 44.64 3.33
2420 2735 0.178068 CACCAACGATAGGGGGACTG 59.822 60.000 0.00 0.00 43.77 3.51
2519 2834 2.352915 GACGCATCTCGGCTCTCG 60.353 66.667 0.00 0.00 44.55 4.04
2525 2840 2.125952 TGCACAGACGCATCTCGG 60.126 61.111 0.00 0.00 43.86 4.63
2699 3015 9.905713 ATCTTAATTACACAAAGCCTCATCTTA 57.094 29.630 0.00 0.00 0.00 2.10
2739 3055 3.296854 TGGCTATCTACATATAGGGCCG 58.703 50.000 0.00 0.00 39.54 6.13
2747 3063 4.474394 AGCACTGACTGGCTATCTACATA 58.526 43.478 0.00 0.00 38.90 2.29
2836 3152 0.958822 GAAACAGCGGTGGGAAATGT 59.041 50.000 20.20 0.00 0.00 2.71
2844 3160 0.583438 CACTGACTGAAACAGCGGTG 59.417 55.000 14.13 14.13 37.95 4.94
2897 3213 7.410120 AAACACCTTGAAGAGTGATTTTTCT 57.590 32.000 16.89 0.00 37.43 2.52
2949 3265 6.321181 GCCTAAACATGTTGATCCAGGAAATA 59.679 38.462 12.82 0.00 0.00 1.40
2981 3297 4.880759 TGACAAAAAGTATGGCCACAATG 58.119 39.130 8.16 3.09 0.00 2.82
3040 3356 9.541884 ACTATTTTGTTGGGGAAAACATATACT 57.458 29.630 0.00 0.00 39.68 2.12
3077 3398 9.784680 CATGAAAGATATCATTATTAGCAAGGC 57.215 33.333 5.32 0.00 37.96 4.35
3215 3536 9.023962 AGCAAAGGAACAAGAACAATTATATCA 57.976 29.630 0.00 0.00 0.00 2.15
3256 3577 9.197306 TCTTCCAGCTCAACAGTTATATTAGTA 57.803 33.333 0.00 0.00 0.00 1.82
3257 3578 8.079211 TCTTCCAGCTCAACAGTTATATTAGT 57.921 34.615 0.00 0.00 0.00 2.24
3258 3579 8.948631 TTCTTCCAGCTCAACAGTTATATTAG 57.051 34.615 0.00 0.00 0.00 1.73
3357 3678 1.338020 GTTGTTCTGAGCCACAAAGGG 59.662 52.381 0.00 0.00 34.70 3.95
3435 3756 1.501582 AGTCAAGGGTCTATCTGGCC 58.498 55.000 0.00 0.00 40.45 5.36
3456 3777 2.821969 AGTTGCACCCATTCAGCTTTAG 59.178 45.455 0.00 0.00 0.00 1.85
3480 3801 1.141657 ACAAGTGGCAGAAGCTTCTCA 59.858 47.619 26.18 18.70 41.70 3.27
3481 3802 1.889545 ACAAGTGGCAGAAGCTTCTC 58.110 50.000 26.18 19.05 41.70 2.87
3482 3803 2.370189 AGTACAAGTGGCAGAAGCTTCT 59.630 45.455 23.49 23.49 41.70 2.85
3483 3804 2.739379 GAGTACAAGTGGCAGAAGCTTC 59.261 50.000 19.11 19.11 41.70 3.86
3507 3828 1.418637 ACACCGCCCGGAAATGTATAT 59.581 47.619 14.44 0.00 38.96 0.86
3569 3890 2.477189 GGTCACGCCAAATGGAAATACG 60.477 50.000 2.98 0.00 37.39 3.06
3583 3904 5.408604 CCTCCACATATAATAAAGGTCACGC 59.591 44.000 0.00 0.00 0.00 5.34
3599 3920 0.772124 AAGACCACCACCCTCCACAT 60.772 55.000 0.00 0.00 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.