Multiple sequence alignment - TraesCS7A01G306400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G306400 chr7A 100.000 7982 0 0 1 7982 432681123 432689104 0.000000e+00 14741.0
1 TraesCS7A01G306400 chr7A 89.630 270 21 4 3823 4092 725737099 725737361 3.570000e-88 337.0
2 TraesCS7A01G306400 chr7A 97.222 180 3 2 5368 5545 432686328 432686507 3.620000e-78 303.0
3 TraesCS7A01G306400 chr7A 97.222 180 3 2 5206 5385 432686490 432686667 3.620000e-78 303.0
4 TraesCS7A01G306400 chr7A 72.517 604 98 38 2762 3322 371776827 371776249 5.030000e-27 134.0
5 TraesCS7A01G306400 chr7A 72.451 461 71 43 2762 3195 89653807 89654238 6.590000e-16 97.1
6 TraesCS7A01G306400 chr7B 96.299 3053 49 19 614 3645 378352015 378355024 0.000000e+00 4953.0
7 TraesCS7A01G306400 chr7B 95.725 2199 46 12 5368 7550 378356660 378358826 0.000000e+00 3496.0
8 TraesCS7A01G306400 chr7B 94.055 1514 44 14 3639 5127 378355056 378356548 0.000000e+00 2255.0
9 TraesCS7A01G306400 chr7B 88.225 586 62 1 1 586 378342661 378343239 0.000000e+00 693.0
10 TraesCS7A01G306400 chr7B 94.643 336 6 4 5060 5385 378356514 378356847 1.990000e-140 510.0
11 TraesCS7A01G306400 chr7B 79.167 720 100 32 2792 3478 637033841 637033139 3.400000e-123 453.0
12 TraesCS7A01G306400 chr7B 90.580 276 26 0 7707 7982 378359218 378359493 4.550000e-97 366.0
13 TraesCS7A01G306400 chr7B 94.545 165 6 1 7547 7711 378358948 378359109 1.330000e-62 252.0
14 TraesCS7A01G306400 chr7B 93.269 104 5 2 3541 3642 50982272 50982375 1.390000e-32 152.0
15 TraesCS7A01G306400 chr7B 100.000 37 0 0 580 616 378343253 378343289 1.440000e-07 69.4
16 TraesCS7A01G306400 chr7D 97.077 2463 49 10 592 3048 383896260 383898705 0.000000e+00 4128.0
17 TraesCS7A01G306400 chr7D 96.365 1953 45 10 5368 7305 383901135 383903076 0.000000e+00 3190.0
18 TraesCS7A01G306400 chr7D 94.543 1301 43 5 3820 5094 383899758 383901056 0.000000e+00 1984.0
19 TraesCS7A01G306400 chr7D 91.702 470 37 2 98 566 383867976 383868444 0.000000e+00 651.0
20 TraesCS7A01G306400 chr7D 94.139 273 15 1 7707 7979 383904214 383904485 1.600000e-111 414.0
21 TraesCS7A01G306400 chr7D 93.796 274 13 2 7288 7559 383903564 383903835 7.460000e-110 409.0
22 TraesCS7A01G306400 chr7D 90.759 303 8 5 5093 5385 383901022 383901314 3.490000e-103 387.0
23 TraesCS7A01G306400 chr7D 88.390 267 25 1 3824 4090 631965122 631964862 4.650000e-82 316.0
24 TraesCS7A01G306400 chr7D 92.040 201 5 4 3639 3828 383899225 383899425 1.020000e-68 272.0
25 TraesCS7A01G306400 chr7D 98.601 143 2 0 3089 3231 383898909 383899051 3.700000e-63 254.0
26 TraesCS7A01G306400 chr7D 97.241 145 2 2 3503 3645 383899049 383899193 2.230000e-60 244.0
27 TraesCS7A01G306400 chr7D 94.904 157 7 1 7556 7711 383903993 383904149 2.230000e-60 244.0
28 TraesCS7A01G306400 chr7D 96.850 127 3 1 4819 4945 567733312 567733437 2.260000e-50 211.0
29 TraesCS7A01G306400 chr7D 82.796 186 18 12 3611 3782 22976543 22976358 3.860000e-33 154.0
30 TraesCS7A01G306400 chr7D 91.818 110 6 3 3536 3642 92765342 92765451 4.990000e-32 150.0
31 TraesCS7A01G306400 chr7D 88.000 100 9 1 2763 2859 514070020 514070119 1.820000e-21 115.0
32 TraesCS7A01G306400 chr1B 84.375 928 85 22 2633 3539 287011375 287010487 0.000000e+00 856.0
33 TraesCS7A01G306400 chr1B 81.489 470 58 9 4237 4705 287010375 287009934 7.620000e-95 359.0
34 TraesCS7A01G306400 chr1B 95.455 66 1 2 4695 4760 269039102 269039039 3.940000e-18 104.0
35 TraesCS7A01G306400 chr1B 89.157 83 8 1 3349 3430 466671542 466671624 1.420000e-17 102.0
36 TraesCS7A01G306400 chr4A 83.843 916 87 20 2648 3539 317036854 317035976 0.000000e+00 815.0
37 TraesCS7A01G306400 chr4A 96.825 126 4 0 4819 4944 681712975 681713100 2.260000e-50 211.0
38 TraesCS7A01G306400 chr4A 75.521 384 50 19 2641 2990 70384520 70384893 1.790000e-31 148.0
39 TraesCS7A01G306400 chrUn 98.182 385 7 0 6572 6956 480729209 480729593 0.000000e+00 673.0
40 TraesCS7A01G306400 chrUn 100.000 59 0 0 4758 4816 53261589 53261531 8.470000e-20 110.0
41 TraesCS7A01G306400 chr6A 88.448 277 23 5 3813 4087 33303169 33302900 7.720000e-85 326.0
42 TraesCS7A01G306400 chr6A 85.417 144 18 3 3639 3780 426956176 426956034 6.450000e-31 147.0
43 TraesCS7A01G306400 chr4B 89.354 263 22 2 3823 4085 22579908 22580164 7.720000e-85 326.0
44 TraesCS7A01G306400 chr4B 81.852 270 23 12 3538 3782 17238862 17238594 3.780000e-48 204.0
45 TraesCS7A01G306400 chr4B 91.860 86 6 1 3349 3433 167716457 167716372 1.410000e-22 119.0
46 TraesCS7A01G306400 chr4B 88.372 86 9 1 3349 3433 442235314 442235229 1.420000e-17 102.0
47 TraesCS7A01G306400 chr2D 89.098 266 22 2 3823 4087 124879013 124878754 2.780000e-84 324.0
48 TraesCS7A01G306400 chr2D 98.347 121 2 0 4819 4939 491950065 491950185 6.270000e-51 213.0
49 TraesCS7A01G306400 chr2D 94.231 104 4 2 3541 3642 330149928 330149825 2.980000e-34 158.0
50 TraesCS7A01G306400 chr2D 100.000 59 0 0 4758 4816 334225970 334226028 8.470000e-20 110.0
51 TraesCS7A01G306400 chr2D 100.000 59 0 0 4758 4816 577463677 577463735 8.470000e-20 110.0
52 TraesCS7A01G306400 chr2D 100.000 59 0 0 4758 4816 577468747 577468805 8.470000e-20 110.0
53 TraesCS7A01G306400 chr2D 100.000 59 0 0 4758 4816 577471670 577471728 8.470000e-20 110.0
54 TraesCS7A01G306400 chr6B 89.057 265 22 2 3823 4087 692232031 692232288 9.990000e-84 322.0
55 TraesCS7A01G306400 chr6B 100.000 30 0 0 2646 2675 717605585 717605556 1.000000e-03 56.5
56 TraesCS7A01G306400 chr4D 88.087 277 23 6 3813 4087 182180427 182180695 3.590000e-83 320.0
57 TraesCS7A01G306400 chr4D 98.347 121 2 0 4819 4939 482703564 482703444 6.270000e-51 213.0
58 TraesCS7A01G306400 chr4D 89.076 119 10 3 3527 3642 481577874 481577992 2.320000e-30 145.0
59 TraesCS7A01G306400 chr4D 77.093 227 33 17 6 223 99271258 99271474 6.550000e-21 113.0
60 TraesCS7A01G306400 chr4D 83.929 56 8 1 367 422 350513188 350513134 1.400000e-02 52.8
61 TraesCS7A01G306400 chr3D 86.806 288 28 6 3813 4098 178366684 178366405 6.010000e-81 313.0
62 TraesCS7A01G306400 chr3D 95.192 104 3 2 3541 3642 195644770 195644873 6.410000e-36 163.0
63 TraesCS7A01G306400 chr3A 98.374 123 2 0 4819 4941 602021402 602021524 4.850000e-52 217.0
64 TraesCS7A01G306400 chr3A 78.333 240 27 9 2644 2865 707917790 707917558 1.810000e-26 132.0
65 TraesCS7A01G306400 chr5D 98.361 122 2 0 4818 4939 299073460 299073581 1.740000e-51 215.0
66 TraesCS7A01G306400 chr5D 100.000 59 0 0 4758 4816 6207772 6207714 8.470000e-20 110.0
67 TraesCS7A01G306400 chr5D 96.923 65 2 0 4699 4763 563758955 563759019 8.470000e-20 110.0
68 TraesCS7A01G306400 chr5D 92.500 40 2 1 2646 2685 406391538 406391500 1.000000e-03 56.5
69 TraesCS7A01G306400 chr6D 79.706 340 25 14 3230 3535 203859000 203858671 1.050000e-48 206.0
70 TraesCS7A01G306400 chr6D 85.616 146 17 4 3639 3782 293808832 293808975 4.990000e-32 150.0
71 TraesCS7A01G306400 chr6D 100.000 59 0 0 4758 4816 429815375 429815433 8.470000e-20 110.0
72 TraesCS7A01G306400 chr6D 92.754 69 3 2 4692 4760 419274035 419274101 1.830000e-16 99.0
73 TraesCS7A01G306400 chr3B 94.656 131 7 0 4819 4949 578772994 578772864 3.780000e-48 204.0
74 TraesCS7A01G306400 chr3B 85.430 151 15 4 3639 3782 490634207 490634057 4.990000e-32 150.0
75 TraesCS7A01G306400 chr3B 90.698 86 7 1 3349 3433 603290792 603290707 6.550000e-21 113.0
76 TraesCS7A01G306400 chr3B 96.825 63 2 0 4698 4760 784595701 784595639 1.100000e-18 106.0
77 TraesCS7A01G306400 chr3B 93.617 47 3 0 479 525 786684933 786684979 4.000000e-08 71.3
78 TraesCS7A01G306400 chr5B 83.333 186 22 6 3606 3782 470407405 470407590 6.410000e-36 163.0
79 TraesCS7A01G306400 chr5B 90.698 86 7 1 3349 3433 161659436 161659521 6.550000e-21 113.0
80 TraesCS7A01G306400 chr2A 93.458 107 5 2 3538 3642 442379977 442379871 2.980000e-34 158.0
81 TraesCS7A01G306400 chr2A 95.385 65 1 2 4696 4760 17206981 17206919 1.420000e-17 102.0
82 TraesCS7A01G306400 chr1D 95.000 100 4 1 3541 3639 62867233 62867134 1.070000e-33 156.0
83 TraesCS7A01G306400 chr5A 84.868 152 15 7 3639 3782 620397782 620397933 6.450000e-31 147.0
84 TraesCS7A01G306400 chr5A 95.312 64 3 0 4697 4760 664553032 664552969 1.420000e-17 102.0
85 TraesCS7A01G306400 chr5A 90.541 74 3 4 4687 4760 9851779 9851710 2.370000e-15 95.3
86 TraesCS7A01G306400 chr2B 76.639 244 39 8 2762 2991 43277613 43277374 1.410000e-22 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G306400 chr7A 432681123 432689104 7981 False 5115.666667 14741 98.148000 1 7982 3 chr7A.!!$F3 7981
1 TraesCS7A01G306400 chr7B 378352015 378359493 7478 False 1972.000000 4953 94.307833 614 7982 6 chr7B.!!$F3 7368
2 TraesCS7A01G306400 chr7B 637033139 637033841 702 True 453.000000 453 79.167000 2792 3478 1 chr7B.!!$R1 686
3 TraesCS7A01G306400 chr7B 378342661 378343289 628 False 381.200000 693 94.112500 1 616 2 chr7B.!!$F2 615
4 TraesCS7A01G306400 chr7D 383896260 383904485 8225 False 1152.600000 4128 94.946500 592 7979 10 chr7D.!!$F5 7387
5 TraesCS7A01G306400 chr1B 287009934 287011375 1441 True 607.500000 856 82.932000 2633 4705 2 chr1B.!!$R2 2072
6 TraesCS7A01G306400 chr4A 317035976 317036854 878 True 815.000000 815 83.843000 2648 3539 1 chr4A.!!$R1 891

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
422 423 0.035439 TCCAGGTTGCGGGAGAAATC 60.035 55.000 0.00 0.00 0.00 2.17 F
1195 1224 0.107945 GGAGACAGAGGCGCTCATTT 60.108 55.000 7.64 0.00 32.06 2.32 F
1683 1712 2.512286 ATCACTGGCATCCACGCG 60.512 61.111 3.53 3.53 0.00 6.01 F
1872 1901 2.607750 AAGGAAGCCGCAGAGGGA 60.608 61.111 0.00 0.00 41.48 4.20 F
3684 4005 1.338674 TGGGCGTTGACCAGAACATAG 60.339 52.381 0.00 0.00 34.69 2.23 F
5064 5767 0.035056 ATTCAACGGGCCAAGAGGAG 60.035 55.000 4.39 0.00 36.89 3.69 F
5085 5788 0.101579 GCGCTTAGTGAGAGGAGGTC 59.898 60.000 0.00 0.00 0.00 3.85 F
5096 5799 0.336737 GAGGAGGTCAAGGAGGAGGA 59.663 60.000 0.00 0.00 0.00 3.71 F
5376 6155 0.520404 GGCAGGATAATGCTGATGCG 59.480 55.000 0.00 0.00 45.75 4.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1878 1907 0.252974 TTTCGATCCCTTCCCCCAGA 60.253 55.000 0.00 0.0 0.0 3.86 R
2394 2423 0.678048 AGAATTCCCCACGCTTGCTC 60.678 55.000 0.65 0.0 0.0 4.26 R
3550 3791 2.567497 TTCCGTCCGTTTCCGCTCT 61.567 57.895 0.00 0.0 0.0 4.09 R
3779 4108 3.323691 AGGCCCAAATTGTCCAAAAGTAC 59.676 43.478 0.00 0.0 0.0 2.73 R
5066 5769 0.101579 GACCTCCTCTCACTAAGCGC 59.898 60.000 0.00 0.0 0.0 5.92 R
6630 7411 1.347707 GGTGTCATGGAGGAGAACACA 59.652 52.381 12.09 0.0 0.0 3.72 R
6762 7543 2.254546 TGGCGGCATATAAGTGGAAG 57.745 50.000 7.97 0.0 0.0 3.46 R
6822 7603 3.118482 ACTCTAACCTACCTCGATCGTCA 60.118 47.826 15.94 0.0 0.0 4.35 R
7269 8054 3.247648 CCCGTCTGAAATTATTAGCCACG 59.752 47.826 0.00 0.0 0.0 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 3.547613 GCGATGCTCAATCACTTTGGATC 60.548 47.826 0.00 0.00 35.92 3.36
126 127 9.844790 CTCTAAATGAAACTTGTCATGCAATAA 57.155 29.630 0.00 0.00 38.28 1.40
137 138 7.121759 ACTTGTCATGCAATAATTTAGAGCAGT 59.878 33.333 10.20 1.75 38.75 4.40
175 176 5.041015 TGGACAGGGGTGGTTATTTATAGT 58.959 41.667 0.00 0.00 0.00 2.12
196 197 1.988406 GGTAGCAACCCGAGGTCCT 60.988 63.158 0.00 0.00 40.21 3.85
248 249 3.937814 AGACAATTATTGTGAGCGGTCA 58.062 40.909 15.83 14.39 45.52 4.02
249 250 4.517285 AGACAATTATTGTGAGCGGTCAT 58.483 39.130 21.66 7.55 45.52 3.06
253 254 3.610040 TTATTGTGAGCGGTCATGTCT 57.390 42.857 21.66 8.65 34.36 3.41
254 255 1.730501 ATTGTGAGCGGTCATGTCTG 58.269 50.000 21.66 0.00 34.36 3.51
262 263 0.734889 CGGTCATGTCTGATTTGGCC 59.265 55.000 0.00 0.00 32.98 5.36
265 266 0.617935 TCATGTCTGATTTGGCCGGA 59.382 50.000 5.05 0.00 0.00 5.14
273 274 3.118075 TCTGATTTGGCCGGACATGAATA 60.118 43.478 13.08 0.00 0.00 1.75
275 276 2.498644 TTTGGCCGGACATGAATACA 57.501 45.000 13.08 0.00 0.00 2.29
276 277 2.727123 TTGGCCGGACATGAATACAT 57.273 45.000 13.08 0.00 37.19 2.29
303 304 3.184683 CTCTGAAGCGGCGCTGAC 61.185 66.667 37.09 29.82 39.62 3.51
304 305 4.742201 TCTGAAGCGGCGCTGACC 62.742 66.667 37.09 25.94 39.62 4.02
320 321 4.294523 CCGAAAACATGCGGGAGA 57.705 55.556 1.89 0.00 43.67 3.71
350 351 3.494254 TGGTGGGCCAAGTCGGTT 61.494 61.111 8.40 0.00 42.83 4.44
360 361 1.810755 CCAAGTCGGTTAAAAGAGGGC 59.189 52.381 0.00 0.00 0.00 5.19
364 365 1.199327 GTCGGTTAAAAGAGGGCTTGC 59.801 52.381 0.00 0.00 33.79 4.01
368 369 2.152016 GTTAAAAGAGGGCTTGCGAGT 58.848 47.619 2.14 0.00 33.79 4.18
369 370 1.808411 TAAAAGAGGGCTTGCGAGTG 58.192 50.000 2.14 0.00 33.79 3.51
382 383 2.283676 GAGTGGTCCGGACTCCCA 60.284 66.667 32.52 20.75 34.84 4.37
390 391 2.750350 CGGACTCCCACAAAGCCT 59.250 61.111 0.00 0.00 0.00 4.58
395 396 1.303643 CTCCCACAAAGCCTCCCAC 60.304 63.158 0.00 0.00 0.00 4.61
406 407 1.752198 CCTCCCACGTTTGTCTCCA 59.248 57.895 0.00 0.00 0.00 3.86
408 409 0.320771 CTCCCACGTTTGTCTCCAGG 60.321 60.000 0.00 0.00 0.00 4.45
411 412 0.944386 CCACGTTTGTCTCCAGGTTG 59.056 55.000 0.00 0.00 0.00 3.77
412 413 0.307760 CACGTTTGTCTCCAGGTTGC 59.692 55.000 0.00 0.00 0.00 4.17
422 423 0.035439 TCCAGGTTGCGGGAGAAATC 60.035 55.000 0.00 0.00 0.00 2.17
423 424 0.322456 CCAGGTTGCGGGAGAAATCA 60.322 55.000 0.00 0.00 27.73 2.57
425 426 0.673644 AGGTTGCGGGAGAAATCACG 60.674 55.000 0.00 0.00 27.73 4.35
428 429 1.265905 GTTGCGGGAGAAATCACGTTT 59.734 47.619 1.53 0.00 0.00 3.60
429 430 1.600023 TGCGGGAGAAATCACGTTTT 58.400 45.000 1.53 0.00 0.00 2.43
433 434 4.216687 TGCGGGAGAAATCACGTTTTAATT 59.783 37.500 1.53 0.00 0.00 1.40
439 440 6.243811 AGAAATCACGTTTTAATTACGCCA 57.756 33.333 9.70 0.00 42.49 5.69
441 442 5.359716 AATCACGTTTTAATTACGCCACA 57.640 34.783 9.70 0.00 42.49 4.17
453 454 1.878522 CGCCACAGACCGATACAGC 60.879 63.158 0.00 0.00 0.00 4.40
456 457 1.144057 CACAGACCGATACAGCCCC 59.856 63.158 0.00 0.00 0.00 5.80
458 459 2.043248 AGACCGATACAGCCCCGT 60.043 61.111 0.00 0.00 0.00 5.28
462 463 0.971959 ACCGATACAGCCCCGTGTTA 60.972 55.000 0.00 0.00 31.46 2.41
467 468 0.828022 TACAGCCCCGTGTTAGATGG 59.172 55.000 0.00 0.00 31.46 3.51
497 498 2.173669 CGGACGCATGCGGAAGATT 61.174 57.895 39.95 21.22 44.69 2.40
500 501 0.863119 GACGCATGCGGAAGATTTGC 60.863 55.000 39.95 15.65 44.69 3.68
527 528 5.069516 GTCGGTGTTGGAGATACCCTTATAA 59.930 44.000 0.00 0.00 36.23 0.98
618 639 5.181056 TGCTCTTTATTTGCATTCTTCACGA 59.819 36.000 0.00 0.00 0.00 4.35
682 704 2.355108 CCCACGTCATGACTCCATTCTT 60.355 50.000 22.95 0.00 0.00 2.52
724 746 5.106475 GGCACATGACATTGATGCAATTTTT 60.106 36.000 14.78 0.00 38.05 1.94
725 747 6.092396 GGCACATGACATTGATGCAATTTTTA 59.908 34.615 14.78 0.00 38.05 1.52
726 748 6.957077 GCACATGACATTGATGCAATTTTTAC 59.043 34.615 0.00 0.00 36.30 2.01
727 749 7.360185 GCACATGACATTGATGCAATTTTTACA 60.360 33.333 0.00 0.00 36.30 2.41
729 751 7.332430 ACATGACATTGATGCAATTTTTACAGG 59.668 33.333 0.00 0.00 31.05 4.00
911 937 7.434492 TCAAACGCATTAAAGTATTTTTCCCA 58.566 30.769 0.00 0.00 40.09 4.37
912 938 7.596995 TCAAACGCATTAAAGTATTTTTCCCAG 59.403 33.333 0.00 0.00 40.09 4.45
949 975 1.228429 CCCCGAAAGCCCAAACTGA 60.228 57.895 0.00 0.00 0.00 3.41
982 1008 2.784654 CCCAAACCCCAACTCCCCA 61.785 63.158 0.00 0.00 0.00 4.96
983 1009 1.533033 CCAAACCCCAACTCCCCAC 60.533 63.158 0.00 0.00 0.00 4.61
984 1010 1.231641 CAAACCCCAACTCCCCACA 59.768 57.895 0.00 0.00 0.00 4.17
985 1011 1.112916 CAAACCCCAACTCCCCACAC 61.113 60.000 0.00 0.00 0.00 3.82
986 1012 2.634193 AAACCCCAACTCCCCACACG 62.634 60.000 0.00 0.00 0.00 4.49
987 1013 3.246112 CCCCAACTCCCCACACGA 61.246 66.667 0.00 0.00 0.00 4.35
988 1014 2.032071 CCCAACTCCCCACACGAC 59.968 66.667 0.00 0.00 0.00 4.34
989 1015 2.032071 CCAACTCCCCACACGACC 59.968 66.667 0.00 0.00 0.00 4.79
990 1016 2.032071 CAACTCCCCACACGACCC 59.968 66.667 0.00 0.00 0.00 4.46
993 1019 0.472352 AACTCCCCACACGACCCTTA 60.472 55.000 0.00 0.00 0.00 2.69
1195 1224 0.107945 GGAGACAGAGGCGCTCATTT 60.108 55.000 7.64 0.00 32.06 2.32
1683 1712 2.512286 ATCACTGGCATCCACGCG 60.512 61.111 3.53 3.53 0.00 6.01
1872 1901 2.607750 AAGGAAGCCGCAGAGGGA 60.608 61.111 0.00 0.00 41.48 4.20
2394 2423 3.670625 TGGGTGTTTGAATAAGGAGTCG 58.329 45.455 0.00 0.00 0.00 4.18
2500 2529 3.181476 GGCTGCTTTGGAGTTTGAAAAGA 60.181 43.478 0.00 0.00 33.63 2.52
2661 2690 5.784023 TGTAAGAACTAGATGATACCCCCA 58.216 41.667 0.00 0.00 0.00 4.96
2865 2899 6.592798 ATTTTTGTGATTTGTGCACTCTTG 57.407 33.333 19.41 0.00 37.18 3.02
2951 2985 7.715249 TGGAGTTGTTTCATGCTATTATCTACC 59.285 37.037 0.00 0.00 0.00 3.18
2992 3026 6.094048 TGAACAATCTTAGCAAAGGTATCTGC 59.906 38.462 0.00 0.00 38.91 4.26
3072 3112 7.672983 TTGAGGCATAAAACTTACTTGAGAG 57.327 36.000 0.00 0.00 0.00 3.20
3329 3551 8.701908 ATCTGTATACAACGGAATAGGTTAGA 57.298 34.615 7.06 0.00 46.57 2.10
3550 3791 7.334421 GCTTACATCAGAAGTAGGATGAAAACA 59.666 37.037 8.47 0.00 42.73 2.83
3684 4005 1.338674 TGGGCGTTGACCAGAACATAG 60.339 52.381 0.00 0.00 34.69 2.23
3779 4108 7.694388 TGATTATGTTAGCAACTTAGCGTAG 57.306 36.000 0.00 0.00 40.15 3.51
3782 4111 7.975866 TTATGTTAGCAACTTAGCGTAGTAC 57.024 36.000 0.00 0.00 40.15 2.73
3784 4113 6.017400 TGTTAGCAACTTAGCGTAGTACTT 57.983 37.500 0.00 0.00 40.15 2.24
3802 4139 3.582164 ACTTTTGGACAATTTGGGCCTA 58.418 40.909 4.53 0.00 0.00 3.93
3899 4576 6.459573 CGGAAATTCCATATTCACGGAAACAT 60.460 38.462 13.04 0.00 44.25 2.71
3916 4593 6.068473 GAAACATAAAGTTCCGTTTCCACT 57.932 37.500 11.11 0.00 40.73 4.00
3918 4595 4.969484 ACATAAAGTTCCGTTTCCACTCT 58.031 39.130 0.00 0.00 0.00 3.24
4002 4679 4.903016 CCATTTTCGTTTTGCAAATTTCCG 59.097 37.500 13.65 12.73 0.00 4.30
4006 4683 6.642683 TTTCGTTTTGCAAATTTCCGTTTA 57.357 29.167 13.65 0.00 0.00 2.01
4088 4765 4.855340 TCCACTCCATTTTCATCCCTAAC 58.145 43.478 0.00 0.00 0.00 2.34
4301 4979 0.532573 CACATCCCGAGATATCCCGG 59.467 60.000 18.11 18.11 44.94 5.73
4316 4994 1.664321 CCCGGAAAGTCGTCGGAGAT 61.664 60.000 0.73 0.00 45.96 2.75
4327 5005 0.755698 GTCGGAGATGAGGTGGGCTA 60.756 60.000 0.00 0.00 40.67 3.93
4331 5009 1.075970 AGATGAGGTGGGCTAGCGA 60.076 57.895 9.00 0.00 0.00 4.93
4436 5114 1.223487 GCCACATCCCATACGGTGT 59.777 57.895 0.00 0.00 0.00 4.16
4553 5231 3.901844 TGGATCTAGAATAAAGGACCCGG 59.098 47.826 0.00 0.00 0.00 5.73
4658 5360 3.153919 GGCCATACTTTTGTCTTCCACA 58.846 45.455 0.00 0.00 0.00 4.17
4956 5659 3.125316 CCTTCCTTTCACGCACAATAGAC 59.875 47.826 0.00 0.00 0.00 2.59
4959 5662 2.159841 CCTTTCACGCACAATAGACACG 60.160 50.000 0.00 0.00 0.00 4.49
5024 5727 4.765339 GCTAATTCCGGTAATTATTGCCCT 59.235 41.667 15.12 0.00 38.93 5.19
5064 5767 0.035056 ATTCAACGGGCCAAGAGGAG 60.035 55.000 4.39 0.00 36.89 3.69
5065 5768 1.415672 TTCAACGGGCCAAGAGGAGT 61.416 55.000 4.39 0.00 36.89 3.85
5066 5769 1.672356 CAACGGGCCAAGAGGAGTG 60.672 63.158 4.39 0.00 36.89 3.51
5067 5770 3.553095 AACGGGCCAAGAGGAGTGC 62.553 63.158 4.39 0.00 36.89 4.40
5070 5773 4.400961 GGCCAAGAGGAGTGCGCT 62.401 66.667 9.73 0.00 36.89 5.92
5071 5774 2.359230 GCCAAGAGGAGTGCGCTT 60.359 61.111 9.73 0.00 36.89 4.68
5072 5775 1.079127 GCCAAGAGGAGTGCGCTTA 60.079 57.895 9.73 0.00 36.89 3.09
5073 5776 1.086634 GCCAAGAGGAGTGCGCTTAG 61.087 60.000 9.73 0.00 36.89 2.18
5074 5777 0.247736 CCAAGAGGAGTGCGCTTAGT 59.752 55.000 9.73 0.00 36.89 2.24
5075 5778 1.354040 CAAGAGGAGTGCGCTTAGTG 58.646 55.000 9.73 0.00 0.00 2.74
5076 5779 1.067565 CAAGAGGAGTGCGCTTAGTGA 60.068 52.381 9.73 0.00 0.00 3.41
5077 5780 0.814457 AGAGGAGTGCGCTTAGTGAG 59.186 55.000 9.73 0.00 0.00 3.51
5078 5781 0.811915 GAGGAGTGCGCTTAGTGAGA 59.188 55.000 9.73 0.00 0.00 3.27
5079 5782 0.814457 AGGAGTGCGCTTAGTGAGAG 59.186 55.000 9.73 0.00 0.00 3.20
5080 5783 0.179124 GGAGTGCGCTTAGTGAGAGG 60.179 60.000 9.73 0.00 0.00 3.69
5081 5784 0.811915 GAGTGCGCTTAGTGAGAGGA 59.188 55.000 9.73 0.00 0.00 3.71
5082 5785 0.814457 AGTGCGCTTAGTGAGAGGAG 59.186 55.000 9.73 0.00 0.00 3.69
5083 5786 0.179124 GTGCGCTTAGTGAGAGGAGG 60.179 60.000 9.73 0.00 0.00 4.30
5084 5787 0.612174 TGCGCTTAGTGAGAGGAGGT 60.612 55.000 9.73 0.00 0.00 3.85
5085 5788 0.101579 GCGCTTAGTGAGAGGAGGTC 59.898 60.000 0.00 0.00 0.00 3.85
5086 5789 1.464734 CGCTTAGTGAGAGGAGGTCA 58.535 55.000 0.00 0.00 0.00 4.02
5087 5790 1.819288 CGCTTAGTGAGAGGAGGTCAA 59.181 52.381 0.00 0.00 0.00 3.18
5088 5791 2.159310 CGCTTAGTGAGAGGAGGTCAAG 60.159 54.545 0.00 0.00 0.00 3.02
5089 5792 2.167487 GCTTAGTGAGAGGAGGTCAAGG 59.833 54.545 0.00 0.00 0.00 3.61
5090 5793 3.702792 CTTAGTGAGAGGAGGTCAAGGA 58.297 50.000 0.00 0.00 0.00 3.36
5091 5794 2.230130 AGTGAGAGGAGGTCAAGGAG 57.770 55.000 0.00 0.00 0.00 3.69
5092 5795 1.190643 GTGAGAGGAGGTCAAGGAGG 58.809 60.000 0.00 0.00 0.00 4.30
5093 5796 1.084866 TGAGAGGAGGTCAAGGAGGA 58.915 55.000 0.00 0.00 0.00 3.71
5094 5797 1.006519 TGAGAGGAGGTCAAGGAGGAG 59.993 57.143 0.00 0.00 0.00 3.69
5095 5798 0.338120 AGAGGAGGTCAAGGAGGAGG 59.662 60.000 0.00 0.00 0.00 4.30
5096 5799 0.336737 GAGGAGGTCAAGGAGGAGGA 59.663 60.000 0.00 0.00 0.00 3.71
5360 6139 2.864114 GCAATGAGCAAGAGAGGCA 58.136 52.632 0.00 0.00 44.79 4.75
5361 6140 0.733729 GCAATGAGCAAGAGAGGCAG 59.266 55.000 0.00 0.00 44.79 4.85
5362 6141 1.380524 CAATGAGCAAGAGAGGCAGG 58.619 55.000 0.00 0.00 0.00 4.85
5363 6142 1.065636 CAATGAGCAAGAGAGGCAGGA 60.066 52.381 0.00 0.00 0.00 3.86
5364 6143 1.509373 ATGAGCAAGAGAGGCAGGAT 58.491 50.000 0.00 0.00 0.00 3.24
5365 6144 2.165357 TGAGCAAGAGAGGCAGGATA 57.835 50.000 0.00 0.00 0.00 2.59
5366 6145 2.470990 TGAGCAAGAGAGGCAGGATAA 58.529 47.619 0.00 0.00 0.00 1.75
5367 6146 3.044156 TGAGCAAGAGAGGCAGGATAAT 58.956 45.455 0.00 0.00 0.00 1.28
5368 6147 3.181457 TGAGCAAGAGAGGCAGGATAATG 60.181 47.826 0.00 0.00 0.00 1.90
5369 6148 1.878734 GCAAGAGAGGCAGGATAATGC 59.121 52.381 0.00 0.00 45.74 3.56
5370 6149 2.486907 GCAAGAGAGGCAGGATAATGCT 60.487 50.000 0.00 0.00 45.75 3.79
5371 6150 3.139850 CAAGAGAGGCAGGATAATGCTG 58.860 50.000 0.00 0.00 45.75 4.41
5372 6151 2.687297 AGAGAGGCAGGATAATGCTGA 58.313 47.619 0.00 0.00 45.75 4.26
5373 6152 3.249752 AGAGAGGCAGGATAATGCTGAT 58.750 45.455 0.00 0.00 45.75 2.90
5374 6153 3.008157 AGAGAGGCAGGATAATGCTGATG 59.992 47.826 0.00 0.00 45.75 3.07
5375 6154 1.811359 GAGGCAGGATAATGCTGATGC 59.189 52.381 0.00 0.00 45.75 3.91
5376 6155 0.520404 GGCAGGATAATGCTGATGCG 59.480 55.000 0.00 0.00 45.75 4.73
5377 6156 0.520404 GCAGGATAATGCTGATGCGG 59.480 55.000 0.00 0.00 43.07 5.69
5378 6157 1.879372 GCAGGATAATGCTGATGCGGA 60.879 52.381 0.00 0.00 43.07 5.54
5379 6158 2.708051 CAGGATAATGCTGATGCGGAT 58.292 47.619 0.00 0.00 38.14 4.18
5380 6159 3.865446 CAGGATAATGCTGATGCGGATA 58.135 45.455 0.00 0.00 38.14 2.59
5381 6160 3.869832 CAGGATAATGCTGATGCGGATAG 59.130 47.826 0.00 0.00 38.14 2.08
5382 6161 5.738324 CAGGATAATGCTGATGCGGATAGC 61.738 50.000 10.07 10.07 41.68 2.97
5383 6162 7.870174 CAGGATAATGCTGATGCGGATAGCT 62.870 48.000 15.38 0.00 41.79 3.32
5391 6170 3.006706 GCGGATAGCTTGCGTGTC 58.993 61.111 0.00 0.00 41.84 3.67
5392 6171 1.809619 GCGGATAGCTTGCGTGTCA 60.810 57.895 0.00 0.00 41.84 3.58
5393 6172 1.358725 GCGGATAGCTTGCGTGTCAA 61.359 55.000 0.00 0.00 41.84 3.18
5407 6186 7.525688 TTGCGTGTCAAGAGAAATAAGATAG 57.474 36.000 0.00 0.00 0.00 2.08
5408 6187 6.631016 TGCGTGTCAAGAGAAATAAGATAGT 58.369 36.000 0.00 0.00 0.00 2.12
5409 6188 7.097192 TGCGTGTCAAGAGAAATAAGATAGTT 58.903 34.615 0.00 0.00 0.00 2.24
5410 6189 7.063426 TGCGTGTCAAGAGAAATAAGATAGTTG 59.937 37.037 0.00 0.00 0.00 3.16
5411 6190 7.464710 GCGTGTCAAGAGAAATAAGATAGTTGG 60.465 40.741 0.00 0.00 0.00 3.77
5412 6191 7.010552 CGTGTCAAGAGAAATAAGATAGTTGGG 59.989 40.741 0.00 0.00 0.00 4.12
5413 6192 8.041323 GTGTCAAGAGAAATAAGATAGTTGGGA 58.959 37.037 0.00 0.00 0.00 4.37
5414 6193 8.772250 TGTCAAGAGAAATAAGATAGTTGGGAT 58.228 33.333 0.00 0.00 0.00 3.85
5415 6194 9.050601 GTCAAGAGAAATAAGATAGTTGGGATG 57.949 37.037 0.00 0.00 0.00 3.51
5416 6195 8.992349 TCAAGAGAAATAAGATAGTTGGGATGA 58.008 33.333 0.00 0.00 0.00 2.92
5417 6196 9.618890 CAAGAGAAATAAGATAGTTGGGATGAA 57.381 33.333 0.00 0.00 0.00 2.57
5418 6197 9.620259 AAGAGAAATAAGATAGTTGGGATGAAC 57.380 33.333 0.00 0.00 0.00 3.18
5419 6198 8.997734 AGAGAAATAAGATAGTTGGGATGAACT 58.002 33.333 0.00 0.00 39.54 3.01
5420 6199 9.267084 GAGAAATAAGATAGTTGGGATGAACTC 57.733 37.037 0.00 0.00 37.38 3.01
5421 6200 8.997734 AGAAATAAGATAGTTGGGATGAACTCT 58.002 33.333 0.00 0.00 37.38 3.24
5422 6201 9.620259 GAAATAAGATAGTTGGGATGAACTCTT 57.380 33.333 0.00 0.00 37.38 2.85
5423 6202 9.981460 AAATAAGATAGTTGGGATGAACTCTTT 57.019 29.630 0.00 0.00 37.38 2.52
5426 6205 7.130681 AGATAGTTGGGATGAACTCTTTAGG 57.869 40.000 0.00 0.00 37.38 2.69
5427 6206 6.674419 AGATAGTTGGGATGAACTCTTTAGGT 59.326 38.462 0.00 0.00 37.38 3.08
5428 6207 7.844779 AGATAGTTGGGATGAACTCTTTAGGTA 59.155 37.037 0.00 0.00 37.38 3.08
5429 6208 6.893020 AGTTGGGATGAACTCTTTAGGTAT 57.107 37.500 0.00 0.00 29.85 2.73
5430 6209 7.272144 AGTTGGGATGAACTCTTTAGGTATT 57.728 36.000 0.00 0.00 29.85 1.89
5431 6210 8.388656 AGTTGGGATGAACTCTTTAGGTATTA 57.611 34.615 0.00 0.00 29.85 0.98
5432 6211 9.004231 AGTTGGGATGAACTCTTTAGGTATTAT 57.996 33.333 0.00 0.00 29.85 1.28
5435 6214 9.892444 TGGGATGAACTCTTTAGGTATTATAGA 57.108 33.333 0.00 0.00 0.00 1.98
5443 6222 9.696572 ACTCTTTAGGTATTATAGATATGCGGA 57.303 33.333 0.00 0.00 0.00 5.54
5448 6227 6.583562 AGGTATTATAGATATGCGGAAAGGC 58.416 40.000 0.00 0.00 0.00 4.35
5479 6258 4.164843 ACTACATGAAGTGGTTTGTGGT 57.835 40.909 0.00 0.00 39.06 4.16
5480 6259 3.882888 ACTACATGAAGTGGTTTGTGGTG 59.117 43.478 0.00 0.00 39.06 4.17
5481 6260 2.733956 ACATGAAGTGGTTTGTGGTGT 58.266 42.857 0.00 0.00 0.00 4.16
5482 6261 3.096092 ACATGAAGTGGTTTGTGGTGTT 58.904 40.909 0.00 0.00 0.00 3.32
5483 6262 3.513515 ACATGAAGTGGTTTGTGGTGTTT 59.486 39.130 0.00 0.00 0.00 2.83
5484 6263 3.584406 TGAAGTGGTTTGTGGTGTTTG 57.416 42.857 0.00 0.00 0.00 2.93
5485 6264 2.232452 TGAAGTGGTTTGTGGTGTTTGG 59.768 45.455 0.00 0.00 0.00 3.28
5486 6265 1.190643 AGTGGTTTGTGGTGTTTGGG 58.809 50.000 0.00 0.00 0.00 4.12
5487 6266 0.899019 GTGGTTTGTGGTGTTTGGGT 59.101 50.000 0.00 0.00 0.00 4.51
5488 6267 2.100989 GTGGTTTGTGGTGTTTGGGTA 58.899 47.619 0.00 0.00 0.00 3.69
5489 6268 2.496470 GTGGTTTGTGGTGTTTGGGTAA 59.504 45.455 0.00 0.00 0.00 2.85
5490 6269 3.056035 GTGGTTTGTGGTGTTTGGGTAAA 60.056 43.478 0.00 0.00 0.00 2.01
5491 6270 3.056035 TGGTTTGTGGTGTTTGGGTAAAC 60.056 43.478 0.00 0.00 45.04 2.01
5757 6537 5.806286 TGTCGTTTTGTCTTGATTTGAGTC 58.194 37.500 0.00 0.00 0.00 3.36
5886 6666 4.589908 AGTAGCCATTACCTGTTTCTTGG 58.410 43.478 0.00 0.00 32.37 3.61
6030 6811 4.917385 TGCTTATATGGGTGTTTGTGAGT 58.083 39.130 0.00 0.00 0.00 3.41
6097 6878 7.732222 TTGGCCATTTCTGGATTAGTTTATT 57.268 32.000 6.09 0.00 46.37 1.40
6630 7411 7.698506 TCTTGAATTCAGCAGATTCTCATTT 57.301 32.000 8.41 0.00 0.00 2.32
6879 7660 3.873910 TCTTAGTGTAAAGCTGATGGGC 58.126 45.455 0.00 0.00 0.00 5.36
6903 7684 3.762288 ACGACAGTACATGTGATACAGGT 59.238 43.478 9.11 4.64 45.71 4.00
6905 7686 5.066117 ACGACAGTACATGTGATACAGGTAG 59.934 44.000 9.11 4.92 44.58 3.18
6987 7768 4.899502 AGGACTTCAAATTCTGACATCGT 58.100 39.130 0.00 0.00 32.21 3.73
7006 7787 3.003897 TCGTTTTGTGTTACCAGATTGCC 59.996 43.478 0.00 0.00 0.00 4.52
7125 7910 2.616458 GGGCCATCCAAGACCCTGT 61.616 63.158 4.39 0.00 39.42 4.00
7245 8030 3.520696 AGGGGTATATGCACTGCAGATA 58.479 45.455 23.35 13.25 43.65 1.98
7269 8054 5.983118 AGTAATGTTTGCTTTGCCTGTTAAC 59.017 36.000 0.00 0.00 0.00 2.01
7321 8611 3.963687 CTGACCATGAGCAGCCGCA 62.964 63.158 0.00 0.00 42.27 5.69
7322 8612 2.515523 GACCATGAGCAGCCGCAT 60.516 61.111 0.00 0.00 42.27 4.73
7635 9213 3.516300 TCTTTTGCCATGAATGAAGCCAT 59.484 39.130 0.00 0.00 33.66 4.40
7718 9410 2.503158 CGCAACGTCGGATGTCGA 60.503 61.111 2.85 0.00 46.77 4.20
7890 9582 3.393941 CTCTCTAGCCAAATCTTCCCCAT 59.606 47.826 0.00 0.00 0.00 4.00
7900 9592 4.664688 AATCTTCCCCATTGTTGACTCT 57.335 40.909 0.00 0.00 0.00 3.24
7906 9598 4.739793 TCCCCATTGTTGACTCTGATTTT 58.260 39.130 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 0.826062 TGATTGAGCATCGCTGGAGA 59.174 50.000 0.00 0.00 39.88 3.71
73 74 4.935205 CCCATCGTCTGAAACATTTGACTA 59.065 41.667 0.00 0.00 0.00 2.59
126 127 3.710209 AGTTGGCTGACTGCTCTAAAT 57.290 42.857 4.20 0.00 42.39 1.40
127 128 4.617253 TTAGTTGGCTGACTGCTCTAAA 57.383 40.909 4.20 0.00 42.39 1.85
156 157 5.137551 CCCAACTATAAATAACCACCCCTG 58.862 45.833 0.00 0.00 0.00 4.45
224 225 5.086104 ACCGCTCACAATAATTGTCTAGT 57.914 39.130 0.00 0.00 43.23 2.57
248 249 0.327924 TGTCCGGCCAAATCAGACAT 59.672 50.000 2.24 0.00 32.75 3.06
249 250 0.327924 ATGTCCGGCCAAATCAGACA 59.672 50.000 2.24 5.88 41.35 3.41
253 254 2.142356 ATTCATGTCCGGCCAAATCA 57.858 45.000 2.24 0.00 0.00 2.57
254 255 2.948979 TGTATTCATGTCCGGCCAAATC 59.051 45.455 2.24 0.00 0.00 2.17
297 298 1.509787 CGCATGTTTTCGGTCAGCG 60.510 57.895 0.00 0.00 37.68 5.18
298 299 1.154225 CCGCATGTTTTCGGTCAGC 60.154 57.895 1.71 0.00 40.72 4.26
302 303 0.953960 GTCTCCCGCATGTTTTCGGT 60.954 55.000 8.41 0.00 43.87 4.69
303 304 0.953471 TGTCTCCCGCATGTTTTCGG 60.953 55.000 2.80 2.80 44.89 4.30
304 305 0.443869 CTGTCTCCCGCATGTTTTCG 59.556 55.000 0.00 0.00 0.00 3.46
305 306 1.734465 CTCTGTCTCCCGCATGTTTTC 59.266 52.381 0.00 0.00 0.00 2.29
306 307 1.611673 CCTCTGTCTCCCGCATGTTTT 60.612 52.381 0.00 0.00 0.00 2.43
307 308 0.036010 CCTCTGTCTCCCGCATGTTT 60.036 55.000 0.00 0.00 0.00 2.83
308 309 1.599047 CCTCTGTCTCCCGCATGTT 59.401 57.895 0.00 0.00 0.00 2.71
320 321 0.105709 CCCACCAAAAACCCCTCTGT 60.106 55.000 0.00 0.00 0.00 3.41
343 344 2.779506 CAAGCCCTCTTTTAACCGACT 58.220 47.619 0.00 0.00 0.00 4.18
345 346 1.530323 GCAAGCCCTCTTTTAACCGA 58.470 50.000 0.00 0.00 0.00 4.69
350 351 1.610624 CCACTCGCAAGCCCTCTTTTA 60.611 52.381 0.00 0.00 37.18 1.52
360 361 2.432628 GTCCGGACCACTCGCAAG 60.433 66.667 24.75 0.00 0.00 4.01
364 365 3.450115 GGGAGTCCGGACCACTCG 61.450 72.222 30.82 0.00 41.20 4.18
368 369 1.764571 CTTTGTGGGAGTCCGGACCA 61.765 60.000 30.82 19.48 35.24 4.02
369 370 1.003718 CTTTGTGGGAGTCCGGACC 60.004 63.158 30.82 21.02 35.24 4.46
374 375 1.002011 GGAGGCTTTGTGGGAGTCC 60.002 63.158 0.00 0.00 0.00 3.85
382 383 0.395173 ACAAACGTGGGAGGCTTTGT 60.395 50.000 0.00 0.00 33.07 2.83
390 391 1.052124 ACCTGGAGACAAACGTGGGA 61.052 55.000 0.00 0.00 42.06 4.37
395 396 1.569493 CGCAACCTGGAGACAAACG 59.431 57.895 0.00 0.00 42.06 3.60
406 407 0.673644 CGTGATTTCTCCCGCAACCT 60.674 55.000 0.00 0.00 0.00 3.50
408 409 0.872388 AACGTGATTTCTCCCGCAAC 59.128 50.000 0.00 0.00 0.00 4.17
411 412 3.817148 TTAAAACGTGATTTCTCCCGC 57.183 42.857 0.00 0.00 0.00 6.13
412 413 5.955496 CGTAATTAAAACGTGATTTCTCCCG 59.045 40.000 0.00 0.00 35.66 5.14
422 423 4.145997 GTCTGTGGCGTAATTAAAACGTG 58.854 43.478 13.28 2.88 42.26 4.49
423 424 3.187022 GGTCTGTGGCGTAATTAAAACGT 59.813 43.478 13.28 0.00 42.26 3.99
425 426 3.432933 TCGGTCTGTGGCGTAATTAAAAC 59.567 43.478 0.00 0.00 0.00 2.43
428 429 3.530265 ATCGGTCTGTGGCGTAATTAA 57.470 42.857 0.00 0.00 0.00 1.40
429 430 3.380954 TGTATCGGTCTGTGGCGTAATTA 59.619 43.478 0.00 0.00 0.00 1.40
433 434 0.736636 CTGTATCGGTCTGTGGCGTA 59.263 55.000 0.00 0.00 0.00 4.42
439 440 2.423898 CGGGGCTGTATCGGTCTGT 61.424 63.158 0.00 0.00 0.00 3.41
441 442 2.043248 ACGGGGCTGTATCGGTCT 60.043 61.111 0.00 0.00 0.00 3.85
453 454 1.379527 GAAAGCCATCTAACACGGGG 58.620 55.000 0.00 0.00 0.00 5.73
492 493 0.536460 AACACCGACCCGCAAATCTT 60.536 50.000 0.00 0.00 0.00 2.40
495 496 2.265182 CCAACACCGACCCGCAAAT 61.265 57.895 0.00 0.00 0.00 2.32
497 498 3.818121 CTCCAACACCGACCCGCAA 62.818 63.158 0.00 0.00 0.00 4.85
500 501 0.179119 GTATCTCCAACACCGACCCG 60.179 60.000 0.00 0.00 0.00 5.28
618 639 4.498520 CGGCAGCGTCATCGGAGT 62.499 66.667 0.00 0.00 37.56 3.85
724 746 5.067283 GCAAAAGGAAGTTGACTTTCCTGTA 59.933 40.000 7.26 0.00 35.99 2.74
725 747 4.142160 GCAAAAGGAAGTTGACTTTCCTGT 60.142 41.667 7.26 0.00 35.99 4.00
726 748 4.363138 GCAAAAGGAAGTTGACTTTCCTG 58.637 43.478 7.26 0.00 35.99 3.86
727 749 3.066760 CGCAAAAGGAAGTTGACTTTCCT 59.933 43.478 0.80 0.80 35.99 3.36
729 751 2.789339 GCGCAAAAGGAAGTTGACTTTC 59.211 45.455 0.30 0.00 35.99 2.62
982 1008 4.060038 CGCCGGTAAGGGTCGTGT 62.060 66.667 1.90 0.00 41.48 4.49
983 1009 3.072486 ATCGCCGGTAAGGGTCGTG 62.072 63.158 1.90 0.00 41.48 4.35
984 1010 2.757099 ATCGCCGGTAAGGGTCGT 60.757 61.111 1.90 0.00 41.48 4.34
985 1011 2.279252 CATCGCCGGTAAGGGTCG 60.279 66.667 1.90 0.00 41.48 4.79
986 1012 1.227176 GACATCGCCGGTAAGGGTC 60.227 63.158 1.90 1.28 41.48 4.46
987 1013 2.897972 GACATCGCCGGTAAGGGT 59.102 61.111 1.90 0.00 41.48 4.34
988 1014 2.279252 CGACATCGCCGGTAAGGG 60.279 66.667 1.90 0.00 41.48 3.95
1195 1224 3.077556 GAAGCCCAGGGAGAGCGA 61.078 66.667 10.89 0.00 0.00 4.93
1872 1901 0.725133 TCCCTTCCCCCAGAGAGATT 59.275 55.000 0.00 0.00 0.00 2.40
1878 1907 0.252974 TTTCGATCCCTTCCCCCAGA 60.253 55.000 0.00 0.00 0.00 3.86
2394 2423 0.678048 AGAATTCCCCACGCTTGCTC 60.678 55.000 0.65 0.00 0.00 4.26
2500 2529 6.092670 CGATGAAGTGTAACAACAGGATCAAT 59.907 38.462 0.00 0.00 41.43 2.57
2743 2775 6.392625 TGTAGTCCATGCAACTACTAGATC 57.607 41.667 24.97 6.74 46.03 2.75
2865 2899 6.966534 AATAAATGGAATGACACATCTCCC 57.033 37.500 0.00 0.00 0.00 4.30
2951 2985 7.651808 AGATTGTTCATAGGTGAAACAACAAG 58.348 34.615 2.35 0.00 45.38 3.16
2992 3026 7.793902 AGCGTTTACGATAAAATAATAGGCAG 58.206 34.615 6.44 0.00 43.02 4.85
3086 3126 3.303881 TGTCCACGATTCTGAGTTCTG 57.696 47.619 0.00 0.00 0.00 3.02
3087 3127 4.707448 ACTATGTCCACGATTCTGAGTTCT 59.293 41.667 0.00 0.00 0.00 3.01
3329 3551 9.104965 CCATCATGCTTTTTGTTTTGATATCAT 57.895 29.630 6.17 0.00 0.00 2.45
3550 3791 2.567497 TTCCGTCCGTTTCCGCTCT 61.567 57.895 0.00 0.00 0.00 4.09
3779 4108 3.323691 AGGCCCAAATTGTCCAAAAGTAC 59.676 43.478 0.00 0.00 0.00 2.73
3782 4111 4.615588 TTAGGCCCAAATTGTCCAAAAG 57.384 40.909 0.00 0.00 0.00 2.27
3784 4113 5.072329 TGATTTTAGGCCCAAATTGTCCAAA 59.928 36.000 11.03 0.00 0.00 3.28
3802 4139 6.883217 ACACACTGAGCAGAATAGATGATTTT 59.117 34.615 4.21 0.00 0.00 1.82
3899 4576 4.773013 ACAAGAGTGGAAACGGAACTTTA 58.227 39.130 0.00 0.00 0.00 1.85
3916 4593 2.018515 GTGTTTTCCGGTGGAACAAGA 58.981 47.619 17.16 0.00 44.16 3.02
3918 4595 1.104630 GGTGTTTTCCGGTGGAACAA 58.895 50.000 17.16 0.00 44.16 2.83
4002 4679 9.634163 AGGAAATATGAAAATGGAAACGTAAAC 57.366 29.630 0.00 0.00 0.00 2.01
4006 4683 7.148069 GGAGAGGAAATATGAAAATGGAAACGT 60.148 37.037 0.00 0.00 0.00 3.99
4088 4765 5.293079 GCTAGCTTTACTGAATCACTTCTGG 59.707 44.000 7.70 0.00 35.33 3.86
4301 4979 1.473278 ACCTCATCTCCGACGACTTTC 59.527 52.381 0.00 0.00 0.00 2.62
4316 4994 0.618458 AAAATCGCTAGCCCACCTCA 59.382 50.000 9.66 0.00 0.00 3.86
4327 5005 3.134127 GGCTCCGGCAAAATCGCT 61.134 61.111 0.00 0.00 40.87 4.93
4331 5009 1.002624 TCTTCGGCTCCGGCAAAAT 60.003 52.632 8.59 0.00 40.87 1.82
4382 5060 3.412386 CTCCGGTTGAGAACAATCCTTT 58.588 45.455 0.00 0.00 44.42 3.11
4436 5114 0.618458 CCAGAACATCCTTTCCCCGA 59.382 55.000 0.00 0.00 0.00 5.14
4658 5360 4.413520 ACTGATGGCCTCACCTATTTGTAT 59.586 41.667 3.32 0.00 40.22 2.29
4815 5517 3.181479 TGCGTACTATAGACCCAAAGCAG 60.181 47.826 6.78 0.00 0.00 4.24
4905 5608 3.361443 CGCAGCGGTAAAGTTGTTC 57.639 52.632 7.00 0.00 0.00 3.18
4956 5659 5.296531 TGGATTGGATGATTTATGTCACGTG 59.703 40.000 9.94 9.94 0.00 4.49
4959 5662 6.015688 AGCATGGATTGGATGATTTATGTCAC 60.016 38.462 0.00 0.00 0.00 3.67
5006 5709 3.655615 ACAGGGCAATAATTACCGGAA 57.344 42.857 9.46 0.00 0.00 4.30
5024 5727 3.760738 TGCATGTGGAGGTCAATAAACA 58.239 40.909 0.00 0.00 0.00 2.83
5064 5767 0.179124 CCTCCTCTCACTAAGCGCAC 60.179 60.000 11.47 0.00 0.00 5.34
5065 5768 0.612174 ACCTCCTCTCACTAAGCGCA 60.612 55.000 11.47 0.00 0.00 6.09
5066 5769 0.101579 GACCTCCTCTCACTAAGCGC 59.898 60.000 0.00 0.00 0.00 5.92
5067 5770 1.464734 TGACCTCCTCTCACTAAGCG 58.535 55.000 0.00 0.00 0.00 4.68
5068 5771 2.167487 CCTTGACCTCCTCTCACTAAGC 59.833 54.545 0.00 0.00 0.00 3.09
5069 5772 3.699038 CTCCTTGACCTCCTCTCACTAAG 59.301 52.174 0.00 0.00 0.00 2.18
5070 5773 3.564571 CCTCCTTGACCTCCTCTCACTAA 60.565 52.174 0.00 0.00 0.00 2.24
5071 5774 2.024846 CCTCCTTGACCTCCTCTCACTA 60.025 54.545 0.00 0.00 0.00 2.74
5072 5775 1.272985 CCTCCTTGACCTCCTCTCACT 60.273 57.143 0.00 0.00 0.00 3.41
5073 5776 1.190643 CCTCCTTGACCTCCTCTCAC 58.809 60.000 0.00 0.00 0.00 3.51
5074 5777 1.006519 CTCCTCCTTGACCTCCTCTCA 59.993 57.143 0.00 0.00 0.00 3.27
5075 5778 1.687996 CCTCCTCCTTGACCTCCTCTC 60.688 61.905 0.00 0.00 0.00 3.20
5076 5779 0.338120 CCTCCTCCTTGACCTCCTCT 59.662 60.000 0.00 0.00 0.00 3.69
5077 5780 0.336737 TCCTCCTCCTTGACCTCCTC 59.663 60.000 0.00 0.00 0.00 3.71
5078 5781 0.793617 TTCCTCCTCCTTGACCTCCT 59.206 55.000 0.00 0.00 0.00 3.69
5079 5782 1.488393 CATTCCTCCTCCTTGACCTCC 59.512 57.143 0.00 0.00 0.00 4.30
5080 5783 1.134250 GCATTCCTCCTCCTTGACCTC 60.134 57.143 0.00 0.00 0.00 3.85
5081 5784 0.915364 GCATTCCTCCTCCTTGACCT 59.085 55.000 0.00 0.00 0.00 3.85
5082 5785 0.462759 CGCATTCCTCCTCCTTGACC 60.463 60.000 0.00 0.00 0.00 4.02
5083 5786 1.092345 GCGCATTCCTCCTCCTTGAC 61.092 60.000 0.30 0.00 0.00 3.18
5084 5787 1.221840 GCGCATTCCTCCTCCTTGA 59.778 57.895 0.30 0.00 0.00 3.02
5085 5788 0.393537 AAGCGCATTCCTCCTCCTTG 60.394 55.000 11.47 0.00 0.00 3.61
5086 5789 1.139853 CTAAGCGCATTCCTCCTCCTT 59.860 52.381 11.47 0.00 0.00 3.36
5087 5790 0.755686 CTAAGCGCATTCCTCCTCCT 59.244 55.000 11.47 0.00 0.00 3.69
5088 5791 0.466124 ACTAAGCGCATTCCTCCTCC 59.534 55.000 11.47 0.00 0.00 4.30
5089 5792 1.137086 TCACTAAGCGCATTCCTCCTC 59.863 52.381 11.47 0.00 0.00 3.71
5090 5793 1.137872 CTCACTAAGCGCATTCCTCCT 59.862 52.381 11.47 0.00 0.00 3.69
5091 5794 1.137086 TCTCACTAAGCGCATTCCTCC 59.863 52.381 11.47 0.00 0.00 4.30
5092 5795 2.468831 CTCTCACTAAGCGCATTCCTC 58.531 52.381 11.47 0.00 0.00 3.71
5093 5796 1.137872 CCTCTCACTAAGCGCATTCCT 59.862 52.381 11.47 0.00 0.00 3.36
5094 5797 1.137086 TCCTCTCACTAAGCGCATTCC 59.863 52.381 11.47 0.00 0.00 3.01
5095 5798 2.468831 CTCCTCTCACTAAGCGCATTC 58.531 52.381 11.47 0.00 0.00 2.67
5096 5799 1.137872 CCTCCTCTCACTAAGCGCATT 59.862 52.381 11.47 3.50 0.00 3.56
5213 5982 0.647410 CTTGACACGCAAGCTATCCG 59.353 55.000 0.00 0.00 46.67 4.18
5225 5994 8.041323 TCCCAACTATCTTATTTCTCTTGACAC 58.959 37.037 0.00 0.00 0.00 3.67
5354 6133 2.552591 GCATCAGCATTATCCTGCCTCT 60.553 50.000 0.00 0.00 43.33 3.69
5355 6134 1.811359 GCATCAGCATTATCCTGCCTC 59.189 52.381 0.00 0.00 43.33 4.70
5356 6135 1.881072 CGCATCAGCATTATCCTGCCT 60.881 52.381 0.00 0.00 43.33 4.75
5357 6136 0.520404 CGCATCAGCATTATCCTGCC 59.480 55.000 0.00 0.00 43.33 4.85
5358 6137 0.520404 CCGCATCAGCATTATCCTGC 59.480 55.000 0.00 0.00 42.27 4.85
5359 6138 2.174363 TCCGCATCAGCATTATCCTG 57.826 50.000 0.00 0.00 42.27 3.86
5360 6139 3.681034 GCTATCCGCATCAGCATTATCCT 60.681 47.826 0.00 0.00 42.27 3.24
5361 6140 2.611292 GCTATCCGCATCAGCATTATCC 59.389 50.000 0.00 0.00 42.27 2.59
5362 6141 3.529533 AGCTATCCGCATCAGCATTATC 58.470 45.455 0.00 0.00 42.61 1.75
5363 6142 3.623906 AGCTATCCGCATCAGCATTAT 57.376 42.857 0.00 0.00 42.61 1.28
5364 6143 3.069289 CAAGCTATCCGCATCAGCATTA 58.931 45.455 0.00 0.00 42.61 1.90
5365 6144 1.878088 CAAGCTATCCGCATCAGCATT 59.122 47.619 0.00 0.00 42.61 3.56
5366 6145 1.520494 CAAGCTATCCGCATCAGCAT 58.480 50.000 0.00 0.00 42.61 3.79
5367 6146 1.162181 GCAAGCTATCCGCATCAGCA 61.162 55.000 0.00 0.00 42.61 4.41
5368 6147 1.573436 GCAAGCTATCCGCATCAGC 59.427 57.895 0.00 0.00 42.61 4.26
5369 6148 0.877649 ACGCAAGCTATCCGCATCAG 60.878 55.000 0.00 0.00 42.61 2.90
5370 6149 1.143838 ACGCAAGCTATCCGCATCA 59.856 52.632 0.00 0.00 42.61 3.07
5371 6150 1.154205 ACACGCAAGCTATCCGCATC 61.154 55.000 0.00 0.00 42.61 3.91
5372 6151 1.153369 ACACGCAAGCTATCCGCAT 60.153 52.632 0.00 0.00 42.61 4.73
5373 6152 1.809619 GACACGCAAGCTATCCGCA 60.810 57.895 0.00 0.00 42.61 5.69
5374 6153 1.358725 TTGACACGCAAGCTATCCGC 61.359 55.000 0.00 0.00 45.62 5.54
5375 6154 0.647410 CTTGACACGCAAGCTATCCG 59.353 55.000 0.00 0.00 46.67 4.18
5383 6162 7.097192 ACTATCTTATTTCTCTTGACACGCAA 58.903 34.615 0.00 0.00 34.73 4.85
5384 6163 6.631016 ACTATCTTATTTCTCTTGACACGCA 58.369 36.000 0.00 0.00 0.00 5.24
5385 6164 7.394872 CAACTATCTTATTTCTCTTGACACGC 58.605 38.462 0.00 0.00 0.00 5.34
5386 6165 7.010552 CCCAACTATCTTATTTCTCTTGACACG 59.989 40.741 0.00 0.00 0.00 4.49
5387 6166 8.041323 TCCCAACTATCTTATTTCTCTTGACAC 58.959 37.037 0.00 0.00 0.00 3.67
5388 6167 8.146053 TCCCAACTATCTTATTTCTCTTGACA 57.854 34.615 0.00 0.00 0.00 3.58
5389 6168 9.050601 CATCCCAACTATCTTATTTCTCTTGAC 57.949 37.037 0.00 0.00 0.00 3.18
5390 6169 8.992349 TCATCCCAACTATCTTATTTCTCTTGA 58.008 33.333 0.00 0.00 0.00 3.02
5391 6170 9.618890 TTCATCCCAACTATCTTATTTCTCTTG 57.381 33.333 0.00 0.00 0.00 3.02
5392 6171 9.620259 GTTCATCCCAACTATCTTATTTCTCTT 57.380 33.333 0.00 0.00 0.00 2.85
5393 6172 8.997734 AGTTCATCCCAACTATCTTATTTCTCT 58.002 33.333 0.00 0.00 34.70 3.10
5394 6173 9.267084 GAGTTCATCCCAACTATCTTATTTCTC 57.733 37.037 0.00 0.00 36.71 2.87
5395 6174 8.997734 AGAGTTCATCCCAACTATCTTATTTCT 58.002 33.333 0.00 0.00 36.71 2.52
5396 6175 9.620259 AAGAGTTCATCCCAACTATCTTATTTC 57.380 33.333 0.00 0.00 36.71 2.17
5397 6176 9.981460 AAAGAGTTCATCCCAACTATCTTATTT 57.019 29.630 0.00 0.00 36.71 1.40
5400 6179 8.705594 CCTAAAGAGTTCATCCCAACTATCTTA 58.294 37.037 0.00 0.00 36.71 2.10
5401 6180 7.182930 ACCTAAAGAGTTCATCCCAACTATCTT 59.817 37.037 0.00 0.00 36.71 2.40
5402 6181 6.674419 ACCTAAAGAGTTCATCCCAACTATCT 59.326 38.462 0.00 0.00 36.71 1.98
5403 6182 6.890293 ACCTAAAGAGTTCATCCCAACTATC 58.110 40.000 0.00 0.00 36.71 2.08
5404 6183 6.893020 ACCTAAAGAGTTCATCCCAACTAT 57.107 37.500 0.00 0.00 36.71 2.12
5405 6184 7.989947 ATACCTAAAGAGTTCATCCCAACTA 57.010 36.000 0.00 0.00 36.71 2.24
5406 6185 6.893020 ATACCTAAAGAGTTCATCCCAACT 57.107 37.500 0.00 0.00 39.43 3.16
5409 6188 9.892444 TCTATAATACCTAAAGAGTTCATCCCA 57.108 33.333 0.00 0.00 0.00 4.37
5417 6196 9.696572 TCCGCATATCTATAATACCTAAAGAGT 57.303 33.333 0.00 0.00 0.00 3.24
5422 6201 8.202137 GCCTTTCCGCATATCTATAATACCTAA 58.798 37.037 0.00 0.00 0.00 2.69
5423 6202 7.343574 TGCCTTTCCGCATATCTATAATACCTA 59.656 37.037 0.00 0.00 32.62 3.08
5424 6203 6.156256 TGCCTTTCCGCATATCTATAATACCT 59.844 38.462 0.00 0.00 32.62 3.08
5425 6204 6.346096 TGCCTTTCCGCATATCTATAATACC 58.654 40.000 0.00 0.00 32.62 2.73
5454 6233 6.071051 ACCACAAACCACTTCATGTAGTTTTT 60.071 34.615 1.68 3.11 38.17 1.94
5455 6234 5.420739 ACCACAAACCACTTCATGTAGTTTT 59.579 36.000 1.68 0.00 38.17 2.43
5456 6235 4.953579 ACCACAAACCACTTCATGTAGTTT 59.046 37.500 1.68 0.00 40.20 2.66
5457 6236 4.338118 CACCACAAACCACTTCATGTAGTT 59.662 41.667 1.68 0.00 32.09 2.24
5458 6237 3.882888 CACCACAAACCACTTCATGTAGT 59.117 43.478 0.00 0.00 0.00 2.73
5459 6238 3.882888 ACACCACAAACCACTTCATGTAG 59.117 43.478 0.00 0.00 0.00 2.74
5460 6239 3.892284 ACACCACAAACCACTTCATGTA 58.108 40.909 0.00 0.00 0.00 2.29
5461 6240 2.733956 ACACCACAAACCACTTCATGT 58.266 42.857 0.00 0.00 0.00 3.21
5462 6241 3.799281 AACACCACAAACCACTTCATG 57.201 42.857 0.00 0.00 0.00 3.07
5463 6242 3.118811 CCAAACACCACAAACCACTTCAT 60.119 43.478 0.00 0.00 0.00 2.57
5464 6243 2.232452 CCAAACACCACAAACCACTTCA 59.768 45.455 0.00 0.00 0.00 3.02
5465 6244 2.418060 CCCAAACACCACAAACCACTTC 60.418 50.000 0.00 0.00 0.00 3.01
5466 6245 1.552792 CCCAAACACCACAAACCACTT 59.447 47.619 0.00 0.00 0.00 3.16
5467 6246 1.190643 CCCAAACACCACAAACCACT 58.809 50.000 0.00 0.00 0.00 4.00
5468 6247 0.899019 ACCCAAACACCACAAACCAC 59.101 50.000 0.00 0.00 0.00 4.16
5469 6248 2.526888 TACCCAAACACCACAAACCA 57.473 45.000 0.00 0.00 0.00 3.67
5470 6249 3.523547 GTTTACCCAAACACCACAAACC 58.476 45.455 0.00 0.00 43.02 3.27
5480 6259 6.035220 GCACTTTGTTTAGTGTTTACCCAAAC 59.965 38.462 5.75 0.00 45.76 2.93
5481 6260 6.100668 GCACTTTGTTTAGTGTTTACCCAAA 58.899 36.000 5.75 0.00 45.76 3.28
5482 6261 5.185249 TGCACTTTGTTTAGTGTTTACCCAA 59.815 36.000 5.75 0.00 45.76 4.12
5483 6262 4.705507 TGCACTTTGTTTAGTGTTTACCCA 59.294 37.500 5.75 0.00 45.76 4.51
5484 6263 5.251601 TGCACTTTGTTTAGTGTTTACCC 57.748 39.130 5.75 0.00 45.76 3.69
5485 6264 6.975772 TCATTGCACTTTGTTTAGTGTTTACC 59.024 34.615 5.75 0.00 45.76 2.85
5486 6265 7.305993 GCTCATTGCACTTTGTTTAGTGTTTAC 60.306 37.037 5.75 0.00 45.76 2.01
5487 6266 6.695278 GCTCATTGCACTTTGTTTAGTGTTTA 59.305 34.615 5.75 0.00 45.76 2.01
5488 6267 5.519927 GCTCATTGCACTTTGTTTAGTGTTT 59.480 36.000 5.75 0.00 45.76 2.83
5489 6268 5.043248 GCTCATTGCACTTTGTTTAGTGTT 58.957 37.500 5.75 0.00 45.76 3.32
5490 6269 4.610945 GCTCATTGCACTTTGTTTAGTGT 58.389 39.130 5.75 0.00 45.76 3.55
5504 6283 0.733729 CTGCCTCTCTTGCTCATTGC 59.266 55.000 0.00 0.00 43.25 3.56
5505 6284 1.065636 TCCTGCCTCTCTTGCTCATTG 60.066 52.381 0.00 0.00 0.00 2.82
5506 6285 1.283347 TCCTGCCTCTCTTGCTCATT 58.717 50.000 0.00 0.00 0.00 2.57
5507 6286 1.509373 ATCCTGCCTCTCTTGCTCAT 58.491 50.000 0.00 0.00 0.00 2.90
5508 6287 2.165357 TATCCTGCCTCTCTTGCTCA 57.835 50.000 0.00 0.00 0.00 4.26
5509 6288 3.181456 ACATTATCCTGCCTCTCTTGCTC 60.181 47.826 0.00 0.00 0.00 4.26
5510 6289 2.776536 ACATTATCCTGCCTCTCTTGCT 59.223 45.455 0.00 0.00 0.00 3.91
5511 6290 3.205784 ACATTATCCTGCCTCTCTTGC 57.794 47.619 0.00 0.00 0.00 4.01
5512 6291 4.774124 TCAACATTATCCTGCCTCTCTTG 58.226 43.478 0.00 0.00 0.00 3.02
5513 6292 4.472833 ACTCAACATTATCCTGCCTCTCTT 59.527 41.667 0.00 0.00 0.00 2.85
5514 6293 4.036518 ACTCAACATTATCCTGCCTCTCT 58.963 43.478 0.00 0.00 0.00 3.10
5515 6294 4.125703 CACTCAACATTATCCTGCCTCTC 58.874 47.826 0.00 0.00 0.00 3.20
5615 6395 6.097839 TCCACCAAGGAATACAGAGTGTATAC 59.902 42.308 0.07 0.00 45.65 1.47
6030 6811 4.076394 GGTAGTTAAATGCTCCCACACAA 58.924 43.478 0.00 0.00 0.00 3.33
6097 6878 9.890629 GTTACCATATCATTAAGCATCCATCTA 57.109 33.333 0.00 0.00 0.00 1.98
6137 6918 4.762251 CCCCCTAATAAGCTTCTATTGCAC 59.238 45.833 0.00 0.00 0.00 4.57
6227 7008 8.970020 AGATACCTGCAAACAAATCATGAATAA 58.030 29.630 0.00 0.00 0.00 1.40
6630 7411 1.347707 GGTGTCATGGAGGAGAACACA 59.652 52.381 12.09 0.00 0.00 3.72
6762 7543 2.254546 TGGCGGCATATAAGTGGAAG 57.745 50.000 7.97 0.00 0.00 3.46
6822 7603 3.118482 ACTCTAACCTACCTCGATCGTCA 60.118 47.826 15.94 0.00 0.00 4.35
6879 7660 5.066117 ACCTGTATCACATGTACTGTCGTAG 59.934 44.000 0.00 0.00 35.29 3.51
6903 7684 6.239217 TGGATGCTTAAAATCAGAGAGCTA 57.761 37.500 0.00 0.00 34.56 3.32
6905 7686 5.824904 TTGGATGCTTAAAATCAGAGAGC 57.175 39.130 0.00 0.00 0.00 4.09
6963 7744 5.180117 ACGATGTCAGAATTTGAAGTCCTTG 59.820 40.000 0.00 0.00 37.61 3.61
6987 7768 3.572255 GGAGGCAATCTGGTAACACAAAA 59.428 43.478 0.00 0.00 46.17 2.44
7245 8030 4.670896 AACAGGCAAAGCAAACATTACT 57.329 36.364 0.00 0.00 0.00 2.24
7269 8054 3.247648 CCCGTCTGAAATTATTAGCCACG 59.752 47.826 0.00 0.00 0.00 4.94
7321 8611 8.195436 CCTGCATTTTCTAACAGAAATCATCAT 58.805 33.333 2.40 0.00 43.06 2.45
7322 8612 7.541162 CCTGCATTTTCTAACAGAAATCATCA 58.459 34.615 2.40 0.00 43.06 3.07
7718 9410 6.474630 CCTATAGTACGGTGGATCTTCTACT 58.525 44.000 0.00 0.00 0.00 2.57
7727 9419 4.406326 TCATTTTGCCTATAGTACGGTGGA 59.594 41.667 0.00 0.00 0.00 4.02
7840 9532 3.010420 GGGTGCTTGAATAGGAAGTCAC 58.990 50.000 0.00 0.00 31.88 3.67
7890 9582 5.357878 ACTTGCAGAAAATCAGAGTCAACAA 59.642 36.000 0.00 0.00 0.00 2.83
7955 9647 4.908601 TCCTAGGCTCTTTGTTGAATCA 57.091 40.909 2.96 0.00 0.00 2.57
7959 9651 4.335416 CCATTTCCTAGGCTCTTTGTTGA 58.665 43.478 2.96 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.