Multiple sequence alignment - TraesCS7A01G306100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G306100 chr7A 100.000 4441 0 0 1 4441 431043669 431039229 0.000000e+00 8202.0
1 TraesCS7A01G306100 chr7D 95.792 1830 38 8 711 2515 382946266 382944451 0.000000e+00 2916.0
2 TraesCS7A01G306100 chr7D 96.807 1190 31 4 2615 3802 382944452 382943268 0.000000e+00 1980.0
3 TraesCS7A01G306100 chr7D 92.742 248 12 3 448 694 382946493 382946251 1.970000e-93 353.0
4 TraesCS7A01G306100 chr7D 92.821 195 12 2 94 287 382946684 382946491 9.400000e-72 281.0
5 TraesCS7A01G306100 chr7D 90.000 210 21 0 4228 4437 295352302 295352511 5.660000e-69 272.0
6 TraesCS7A01G306100 chr7D 90.751 173 16 0 284 456 184381391 184381219 9.610000e-57 231.0
7 TraesCS7A01G306100 chr7D 89.720 107 10 1 3941 4046 295351872 295351978 7.750000e-28 135.0
8 TraesCS7A01G306100 chr7D 98.000 50 1 0 1766 1815 424708818 424708867 2.200000e-13 87.9
9 TraesCS7A01G306100 chr7B 96.471 1190 32 5 2615 3802 377322289 377321108 0.000000e+00 1956.0
10 TraesCS7A01G306100 chr7B 96.531 1182 25 11 711 1888 377324021 377322852 0.000000e+00 1941.0
11 TraesCS7A01G306100 chr7B 93.934 544 8 9 1997 2515 377322831 377322288 0.000000e+00 798.0
12 TraesCS7A01G306100 chr7B 90.769 195 16 2 94 287 377326185 377325992 4.410000e-65 259.0
13 TraesCS7A01G306100 chr7B 88.263 213 25 0 4228 4440 642467580 642467368 5.700000e-64 255.0
14 TraesCS7A01G306100 chr7B 92.727 165 12 0 285 449 517104969 517104805 5.740000e-59 239.0
15 TraesCS7A01G306100 chr7B 92.810 153 4 5 547 697 377324150 377324003 9.670000e-52 215.0
16 TraesCS7A01G306100 chr7B 96.262 107 4 0 2516 2622 559142295 559142189 4.570000e-40 176.0
17 TraesCS7A01G306100 chr7B 88.889 135 9 3 2489 2617 78552027 78552161 1.280000e-35 161.0
18 TraesCS7A01G306100 chr5B 82.563 671 64 21 3821 4440 128214501 128213833 3.910000e-150 542.0
19 TraesCS7A01G306100 chr5B 94.643 112 5 1 2516 2626 515669465 515669576 5.910000e-39 172.0
20 TraesCS7A01G306100 chr5B 88.793 116 10 3 3832 3944 128209575 128209460 5.990000e-29 139.0
21 TraesCS7A01G306100 chr5B 92.308 65 5 0 1769 1833 162947412 162947348 4.730000e-15 93.5
22 TraesCS7A01G306100 chr5B 97.778 45 1 0 3941 3985 128209426 128209382 1.320000e-10 78.7
23 TraesCS7A01G306100 chr5B 75.817 153 27 8 136 279 491100170 491100019 7.970000e-08 69.4
24 TraesCS7A01G306100 chr5B 100.000 28 0 0 251 278 494018861 494018834 8.000000e-03 52.8
25 TraesCS7A01G306100 chr6D 91.908 173 14 0 285 457 346251546 346251374 4.440000e-60 243.0
26 TraesCS7A01G306100 chr3B 86.854 213 28 0 4228 4440 809368855 809368643 5.740000e-59 239.0
27 TraesCS7A01G306100 chr1D 92.683 164 12 0 283 446 414878244 414878407 2.060000e-58 237.0
28 TraesCS7A01G306100 chr1D 75.000 148 23 11 143 279 381308409 381308265 6.210000e-04 56.5
29 TraesCS7A01G306100 chr5A 91.329 173 13 2 277 449 389723266 389723436 7.430000e-58 235.0
30 TraesCS7A01G306100 chr5A 98.000 50 1 0 1769 1818 700441681 700441632 2.200000e-13 87.9
31 TraesCS7A01G306100 chr3A 90.503 179 15 2 285 462 514625354 514625531 7.430000e-58 235.0
32 TraesCS7A01G306100 chr3D 90.805 174 15 1 285 457 550509596 550509423 9.610000e-57 231.0
33 TraesCS7A01G306100 chr3D 91.667 60 5 0 1756 1815 324311067 324311126 2.850000e-12 84.2
34 TraesCS7A01G306100 chr1A 90.341 176 17 0 285 460 480758913 480758738 9.610000e-57 231.0
35 TraesCS7A01G306100 chr1A 99.020 102 1 0 2516 2617 481291513 481291412 2.730000e-42 183.0
36 TraesCS7A01G306100 chr1A 75.974 154 25 9 136 279 481925717 481925566 7.970000e-08 69.4
37 TraesCS7A01G306100 chr5D 89.944 179 17 1 284 461 60139910 60139732 3.460000e-56 230.0
38 TraesCS7A01G306100 chr4B 99.020 102 1 0 2516 2617 522533495 522533596 2.730000e-42 183.0
39 TraesCS7A01G306100 chr4B 86.111 72 6 3 1759 1827 567176578 567176508 1.710000e-09 75.0
40 TraesCS7A01G306100 chr4D 97.143 105 3 0 2516 2620 211385431 211385327 1.270000e-40 178.0
41 TraesCS7A01G306100 chr2D 96.296 108 4 0 2516 2623 349931338 349931231 1.270000e-40 178.0
42 TraesCS7A01G306100 chr2D 96.262 107 4 0 2516 2622 530300983 530301089 4.570000e-40 176.0
43 TraesCS7A01G306100 chr2D 89.394 66 3 4 1769 1833 52850619 52850681 3.680000e-11 80.5
44 TraesCS7A01G306100 chr6A 93.805 113 7 0 2516 2628 250834616 250834504 2.120000e-38 171.0
45 TraesCS7A01G306100 chr4A 92.308 65 5 0 1769 1833 724213288 724213224 4.730000e-15 93.5
46 TraesCS7A01G306100 chr2A 95.652 46 2 0 3941 3986 714733540 714733585 1.710000e-09 75.0
47 TraesCS7A01G306100 chr1B 76.712 146 24 7 143 279 511445632 511445488 6.160000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G306100 chr7A 431039229 431043669 4440 True 8202.0 8202 100.0000 1 4441 1 chr7A.!!$R1 4440
1 TraesCS7A01G306100 chr7D 382943268 382946684 3416 True 1382.5 2916 94.5405 94 3802 4 chr7D.!!$R2 3708
2 TraesCS7A01G306100 chr7D 295351872 295352511 639 False 203.5 272 89.8600 3941 4437 2 chr7D.!!$F2 496
3 TraesCS7A01G306100 chr7B 377321108 377326185 5077 True 1033.8 1956 94.1030 94 3802 5 chr7B.!!$R4 3708
4 TraesCS7A01G306100 chr5B 128213833 128214501 668 True 542.0 542 82.5630 3821 4440 1 chr5B.!!$R1 619

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
299 301 0.033306 GGAGTACTCCCTCCGTTCCT 60.033 60.000 28.87 0.0 43.94 3.36 F
875 2625 0.320374 TACTGCTTACACGCTTGCCT 59.680 50.000 0.00 0.0 0.00 4.75 F
878 2628 0.670546 TGCTTACACGCTTGCCTCTC 60.671 55.000 0.00 0.0 0.00 3.20 F
1313 3063 0.906775 TCCCCTGTTTTAGCCTACGG 59.093 55.000 0.00 0.0 0.00 4.02 F
2537 4314 1.060122 CCGTTCCGAATTACTTGTCGC 59.940 52.381 0.00 0.0 35.93 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1603 3354 1.134907 ACCACTAGGCATCGTAAACCG 60.135 52.381 0.0 0.0 39.06 4.44 R
2599 4376 0.252103 AGCTACTCCCTCCGTTCCAA 60.252 55.000 0.0 0.0 0.00 3.53 R
2605 4382 0.386113 GCTAACAGCTACTCCCTCCG 59.614 60.000 0.0 0.0 38.45 4.63 R
2606 4383 1.486211 TGCTAACAGCTACTCCCTCC 58.514 55.000 0.0 0.0 42.97 4.30 R
3921 5703 0.036483 ATCGTGTGCCACTACATGCA 60.036 50.000 0.0 0.0 37.47 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 7.716799 ACCTTTTAATATGAGAACAATGCCA 57.283 32.000 0.00 0.00 0.00 4.92
37 38 8.133024 ACCTTTTAATATGAGAACAATGCCAA 57.867 30.769 0.00 0.00 0.00 4.52
38 39 8.034804 ACCTTTTAATATGAGAACAATGCCAAC 58.965 33.333 0.00 0.00 0.00 3.77
39 40 8.253113 CCTTTTAATATGAGAACAATGCCAACT 58.747 33.333 0.00 0.00 0.00 3.16
40 41 9.643693 CTTTTAATATGAGAACAATGCCAACTT 57.356 29.630 0.00 0.00 0.00 2.66
43 44 4.708726 ATGAGAACAATGCCAACTTAGC 57.291 40.909 0.00 0.00 0.00 3.09
44 45 3.485394 TGAGAACAATGCCAACTTAGCA 58.515 40.909 0.00 0.00 45.94 3.49
51 52 2.945447 TGCCAACTTAGCATGCAATC 57.055 45.000 21.98 0.37 34.69 2.67
52 53 2.449464 TGCCAACTTAGCATGCAATCT 58.551 42.857 21.98 0.61 34.69 2.40
53 54 2.827322 TGCCAACTTAGCATGCAATCTT 59.173 40.909 21.98 0.16 34.69 2.40
54 55 3.184541 GCCAACTTAGCATGCAATCTTG 58.815 45.455 21.98 14.60 0.00 3.02
55 56 3.367703 GCCAACTTAGCATGCAATCTTGT 60.368 43.478 21.98 6.71 0.00 3.16
56 57 4.142403 GCCAACTTAGCATGCAATCTTGTA 60.142 41.667 21.98 0.00 0.00 2.41
57 58 5.450965 GCCAACTTAGCATGCAATCTTGTAT 60.451 40.000 21.98 0.00 33.65 2.29
70 71 9.754382 ATGCAATCTTGTATGAAAAATACCATC 57.246 29.630 0.00 0.00 32.15 3.51
71 72 8.970020 TGCAATCTTGTATGAAAAATACCATCT 58.030 29.630 0.00 0.00 0.00 2.90
72 73 9.455847 GCAATCTTGTATGAAAAATACCATCTC 57.544 33.333 0.00 0.00 0.00 2.75
105 106 2.525368 CGGGGGAAGAAAAAGACCATT 58.475 47.619 0.00 0.00 0.00 3.16
124 125 8.840321 AGACCATTTCAATATGCAACTATACAC 58.160 33.333 0.00 0.00 0.00 2.90
127 128 7.041440 CCATTTCAATATGCAACTATACACGGA 60.041 37.037 0.00 0.00 0.00 4.69
284 286 2.579201 CGATTCCCGCAGTGGAGT 59.421 61.111 0.00 0.00 42.00 3.85
285 287 1.672854 CCGATTCCCGCAGTGGAGTA 61.673 60.000 0.00 0.00 42.00 2.59
286 288 0.527817 CGATTCCCGCAGTGGAGTAC 60.528 60.000 0.00 0.00 42.00 2.73
287 289 0.824759 GATTCCCGCAGTGGAGTACT 59.175 55.000 0.00 0.00 42.00 2.73
288 290 0.824759 ATTCCCGCAGTGGAGTACTC 59.175 55.000 14.87 14.87 42.00 2.59
298 300 2.502633 GGAGTACTCCCTCCGTTCC 58.497 63.158 28.87 3.41 43.94 3.62
299 301 0.033306 GGAGTACTCCCTCCGTTCCT 60.033 60.000 28.87 0.00 43.94 3.36
300 302 1.213926 GGAGTACTCCCTCCGTTCCTA 59.786 57.143 28.87 0.00 43.94 2.94
301 303 2.296792 GAGTACTCCCTCCGTTCCTAC 58.703 57.143 12.13 0.00 0.00 3.18
302 304 1.637553 AGTACTCCCTCCGTTCCTACA 59.362 52.381 0.00 0.00 0.00 2.74
303 305 2.244252 AGTACTCCCTCCGTTCCTACAT 59.756 50.000 0.00 0.00 0.00 2.29
304 306 3.461085 AGTACTCCCTCCGTTCCTACATA 59.539 47.826 0.00 0.00 0.00 2.29
305 307 3.614568 ACTCCCTCCGTTCCTACATAT 57.385 47.619 0.00 0.00 0.00 1.78
306 308 4.736611 ACTCCCTCCGTTCCTACATATA 57.263 45.455 0.00 0.00 0.00 0.86
307 309 5.272405 ACTCCCTCCGTTCCTACATATAT 57.728 43.478 0.00 0.00 0.00 0.86
308 310 5.017490 ACTCCCTCCGTTCCTACATATATG 58.983 45.833 11.29 11.29 0.00 1.78
309 311 5.006896 TCCCTCCGTTCCTACATATATGT 57.993 43.478 21.57 21.57 44.48 2.29
310 312 5.014858 TCCCTCCGTTCCTACATATATGTC 58.985 45.833 21.49 6.54 41.97 3.06
311 313 5.017490 CCCTCCGTTCCTACATATATGTCT 58.983 45.833 21.49 1.29 41.97 3.41
312 314 5.480772 CCCTCCGTTCCTACATATATGTCTT 59.519 44.000 21.49 0.54 41.97 3.01
313 315 6.014499 CCCTCCGTTCCTACATATATGTCTTT 60.014 42.308 21.49 0.16 41.97 2.52
314 316 7.091443 CCTCCGTTCCTACATATATGTCTTTC 58.909 42.308 21.49 9.12 41.97 2.62
315 317 7.039644 CCTCCGTTCCTACATATATGTCTTTCT 60.040 40.741 21.49 0.00 41.97 2.52
316 318 8.929260 TCCGTTCCTACATATATGTCTTTCTA 57.071 34.615 21.49 2.74 41.97 2.10
317 319 9.529823 TCCGTTCCTACATATATGTCTTTCTAT 57.470 33.333 21.49 0.00 41.97 1.98
333 335 9.996554 TGTCTTTCTATAGATTTCAACAAGTGA 57.003 29.630 2.58 0.00 0.00 3.41
342 344 7.582435 AGATTTCAACAAGTGACTACATACG 57.418 36.000 0.00 0.00 35.39 3.06
343 345 7.375834 AGATTTCAACAAGTGACTACATACGA 58.624 34.615 0.00 0.00 35.39 3.43
344 346 7.870954 AGATTTCAACAAGTGACTACATACGAA 59.129 33.333 0.00 0.00 35.39 3.85
345 347 7.773864 TTTCAACAAGTGACTACATACGAAA 57.226 32.000 0.00 0.00 35.39 3.46
346 348 6.758593 TCAACAAGTGACTACATACGAAAC 57.241 37.500 0.00 0.00 0.00 2.78
347 349 6.274579 TCAACAAGTGACTACATACGAAACA 58.725 36.000 0.00 0.00 0.00 2.83
348 350 6.757478 TCAACAAGTGACTACATACGAAACAA 59.243 34.615 0.00 0.00 0.00 2.83
349 351 7.278203 TCAACAAGTGACTACATACGAAACAAA 59.722 33.333 0.00 0.00 0.00 2.83
350 352 7.542534 ACAAGTGACTACATACGAAACAAAA 57.457 32.000 0.00 0.00 0.00 2.44
351 353 8.149973 ACAAGTGACTACATACGAAACAAAAT 57.850 30.769 0.00 0.00 0.00 1.82
352 354 8.067784 ACAAGTGACTACATACGAAACAAAATG 58.932 33.333 0.00 0.00 0.00 2.32
353 355 7.956420 AGTGACTACATACGAAACAAAATGA 57.044 32.000 0.00 0.00 0.00 2.57
354 356 8.018677 AGTGACTACATACGAAACAAAATGAG 57.981 34.615 0.00 0.00 0.00 2.90
355 357 7.656137 AGTGACTACATACGAAACAAAATGAGT 59.344 33.333 0.00 0.00 0.00 3.41
356 358 7.740346 GTGACTACATACGAAACAAAATGAGTG 59.260 37.037 0.00 0.00 0.00 3.51
357 359 7.654116 TGACTACATACGAAACAAAATGAGTGA 59.346 33.333 0.00 0.00 0.00 3.41
358 360 8.373048 ACTACATACGAAACAAAATGAGTGAA 57.627 30.769 0.00 0.00 0.00 3.18
359 361 8.999431 ACTACATACGAAACAAAATGAGTGAAT 58.001 29.630 0.00 0.00 0.00 2.57
360 362 9.478019 CTACATACGAAACAAAATGAGTGAATC 57.522 33.333 0.00 0.00 0.00 2.52
361 363 8.099364 ACATACGAAACAAAATGAGTGAATCT 57.901 30.769 0.00 0.00 0.00 2.40
362 364 9.214957 ACATACGAAACAAAATGAGTGAATCTA 57.785 29.630 0.00 0.00 0.00 1.98
366 368 9.436957 ACGAAACAAAATGAGTGAATCTATACT 57.563 29.630 0.00 0.00 0.00 2.12
367 369 9.907576 CGAAACAAAATGAGTGAATCTATACTC 57.092 33.333 0.00 0.00 42.77 2.59
399 401 7.872113 TGTTTACATACATCCATATGTTGCA 57.128 32.000 1.24 0.00 44.07 4.08
400 402 8.286191 TGTTTACATACATCCATATGTTGCAA 57.714 30.769 0.00 0.00 44.07 4.08
401 403 8.911965 TGTTTACATACATCCATATGTTGCAAT 58.088 29.630 0.59 0.00 44.07 3.56
402 404 9.398170 GTTTACATACATCCATATGTTGCAATC 57.602 33.333 0.59 0.00 44.07 2.67
403 405 6.579666 ACATACATCCATATGTTGCAATCC 57.420 37.500 0.59 0.00 44.07 3.01
404 406 6.069994 ACATACATCCATATGTTGCAATCCA 58.930 36.000 0.59 0.00 44.07 3.41
405 407 6.722590 ACATACATCCATATGTTGCAATCCAT 59.277 34.615 0.59 5.01 44.07 3.41
406 408 7.233962 ACATACATCCATATGTTGCAATCCATT 59.766 33.333 0.59 0.00 44.07 3.16
407 409 6.488769 ACATCCATATGTTGCAATCCATTT 57.511 33.333 0.59 0.00 44.07 2.32
408 410 6.285224 ACATCCATATGTTGCAATCCATTTG 58.715 36.000 0.59 7.84 44.07 2.32
409 411 6.098552 ACATCCATATGTTGCAATCCATTTGA 59.901 34.615 16.73 8.93 44.07 2.69
410 412 6.541934 TCCATATGTTGCAATCCATTTGAA 57.458 33.333 16.73 0.44 37.53 2.69
411 413 6.944096 TCCATATGTTGCAATCCATTTGAAA 58.056 32.000 16.73 6.70 37.53 2.69
412 414 7.566569 TCCATATGTTGCAATCCATTTGAAAT 58.433 30.769 16.73 1.16 35.27 2.17
413 415 7.496263 TCCATATGTTGCAATCCATTTGAAATG 59.504 33.333 16.73 10.84 35.27 2.32
414 416 7.281324 CCATATGTTGCAATCCATTTGAAATGT 59.719 33.333 15.93 0.00 35.27 2.71
415 417 6.730960 ATGTTGCAATCCATTTGAAATGTC 57.269 33.333 15.93 1.95 35.27 3.06
416 418 5.856156 TGTTGCAATCCATTTGAAATGTCT 58.144 33.333 15.93 0.99 35.27 3.41
417 419 6.990798 TGTTGCAATCCATTTGAAATGTCTA 58.009 32.000 15.93 2.79 35.27 2.59
418 420 7.440198 TGTTGCAATCCATTTGAAATGTCTAA 58.560 30.769 15.93 0.53 35.27 2.10
419 421 7.930325 TGTTGCAATCCATTTGAAATGTCTAAA 59.070 29.630 15.93 1.64 35.27 1.85
420 422 8.772705 GTTGCAATCCATTTGAAATGTCTAAAA 58.227 29.630 15.93 2.12 35.27 1.52
421 423 8.899427 TGCAATCCATTTGAAATGTCTAAAAA 57.101 26.923 15.93 0.00 37.53 1.94
422 424 8.991026 TGCAATCCATTTGAAATGTCTAAAAAG 58.009 29.630 15.93 0.00 37.53 2.27
423 425 9.206870 GCAATCCATTTGAAATGTCTAAAAAGA 57.793 29.630 15.93 4.75 37.53 2.52
444 446 9.907229 AAAAGACTTATATTTAGGAACAGAGGG 57.093 33.333 0.00 0.00 0.00 4.30
445 447 8.855804 AAGACTTATATTTAGGAACAGAGGGA 57.144 34.615 0.00 0.00 0.00 4.20
446 448 8.855804 AGACTTATATTTAGGAACAGAGGGAA 57.144 34.615 0.00 0.00 0.00 3.97
462 464 8.000780 ACAGAGGGAATACATTCTAATTTTGC 57.999 34.615 2.19 0.00 37.00 3.68
558 2307 6.826668 ACGGATACAAAGAATCCACATCATA 58.173 36.000 3.24 0.00 42.69 2.15
608 2357 7.096884 TCTTATACAGATACGCATCCATACC 57.903 40.000 0.00 0.00 0.00 2.73
609 2358 6.661805 TCTTATACAGATACGCATCCATACCA 59.338 38.462 0.00 0.00 0.00 3.25
610 2359 3.667497 ACAGATACGCATCCATACCAG 57.333 47.619 0.00 0.00 0.00 4.00
613 2362 4.218635 ACAGATACGCATCCATACCAGTAG 59.781 45.833 0.00 0.00 0.00 2.57
691 2441 8.641541 CCAAATAAAATCCAGGCTGTACAATAT 58.358 33.333 14.43 3.90 0.00 1.28
692 2442 9.683069 CAAATAAAATCCAGGCTGTACAATATC 57.317 33.333 14.43 0.00 0.00 1.63
693 2443 9.646522 AAATAAAATCCAGGCTGTACAATATCT 57.353 29.630 14.43 0.00 0.00 1.98
694 2444 9.646522 AATAAAATCCAGGCTGTACAATATCTT 57.353 29.630 14.43 0.00 0.00 2.40
695 2445 7.573968 AAAATCCAGGCTGTACAATATCTTC 57.426 36.000 14.43 0.00 0.00 2.87
696 2446 6.506538 AATCCAGGCTGTACAATATCTTCT 57.493 37.500 14.43 0.00 0.00 2.85
697 2447 5.957771 TCCAGGCTGTACAATATCTTCTT 57.042 39.130 14.43 0.00 0.00 2.52
698 2448 6.313519 TCCAGGCTGTACAATATCTTCTTT 57.686 37.500 14.43 0.00 0.00 2.52
699 2449 6.721318 TCCAGGCTGTACAATATCTTCTTTT 58.279 36.000 14.43 0.00 0.00 2.27
700 2450 7.175104 TCCAGGCTGTACAATATCTTCTTTTT 58.825 34.615 14.43 0.00 0.00 1.94
720 2470 4.997545 TTTTTAGGGGTAGGCTGTACAA 57.002 40.909 0.00 0.00 0.00 2.41
865 2615 2.547211 TCTCTCGCCGTATACTGCTTAC 59.453 50.000 15.99 0.00 0.00 2.34
872 2622 2.534349 CCGTATACTGCTTACACGCTTG 59.466 50.000 0.56 0.00 0.00 4.01
873 2623 2.034842 CGTATACTGCTTACACGCTTGC 60.035 50.000 0.56 0.00 0.00 4.01
875 2625 0.320374 TACTGCTTACACGCTTGCCT 59.680 50.000 0.00 0.00 0.00 4.75
876 2626 0.951040 ACTGCTTACACGCTTGCCTC 60.951 55.000 0.00 0.00 0.00 4.70
877 2627 0.671781 CTGCTTACACGCTTGCCTCT 60.672 55.000 0.00 0.00 0.00 3.69
878 2628 0.670546 TGCTTACACGCTTGCCTCTC 60.671 55.000 0.00 0.00 0.00 3.20
1104 2854 4.947147 GGGCACAACTCCCGCACA 62.947 66.667 0.00 0.00 33.43 4.57
1276 3026 4.021925 ACAGGAAGCGAGGTGGGC 62.022 66.667 0.00 0.00 0.00 5.36
1313 3063 0.906775 TCCCCTGTTTTAGCCTACGG 59.093 55.000 0.00 0.00 0.00 4.02
1354 3105 3.153369 TGTTGCATGTGTATGGAGGTT 57.847 42.857 0.00 0.00 35.96 3.50
1603 3354 4.979815 CGGTGTTAGTTGGGATTTTTGTTC 59.020 41.667 0.00 0.00 0.00 3.18
1660 3411 7.390718 AGCAAACTACTCCAACTTAATACTTGG 59.609 37.037 0.00 0.00 38.70 3.61
1667 3418 6.935208 ACTCCAACTTAATACTTGGTTGAGAC 59.065 38.462 0.00 0.00 40.74 3.36
1670 3421 6.149474 CCAACTTAATACTTGGTTGAGACCTG 59.851 42.308 0.00 0.00 46.66 4.00
1782 3533 2.117051 AGAATTTACTCCCTCCGTCCC 58.883 52.381 0.00 0.00 0.00 4.46
1816 3567 8.723942 AGATCGTTTTTCAAGCTATGTTAGAT 57.276 30.769 0.00 0.00 0.00 1.98
1832 3584 4.604490 TGTTAGATGGAGGGGGTACTTTTT 59.396 41.667 0.00 0.00 0.00 1.94
2077 3829 7.656412 TGCAACTTCATGCTTGTTCTTTATTA 58.344 30.769 0.00 0.00 46.54 0.98
2426 4203 2.558359 GCAACCAGGTTTAGCTGATTGT 59.442 45.455 15.37 1.73 0.00 2.71
2513 4290 6.276832 TGTTGCCTTAGTAAGTTCTCGTAT 57.723 37.500 9.05 0.00 0.00 3.06
2514 4291 7.395190 TGTTGCCTTAGTAAGTTCTCGTATA 57.605 36.000 9.05 0.00 0.00 1.47
2515 4292 7.253422 TGTTGCCTTAGTAAGTTCTCGTATAC 58.747 38.462 9.05 0.00 0.00 1.47
2516 4293 7.121759 TGTTGCCTTAGTAAGTTCTCGTATACT 59.878 37.037 9.05 0.00 33.45 2.12
2517 4294 7.256756 TGCCTTAGTAAGTTCTCGTATACTC 57.743 40.000 9.05 0.00 31.46 2.59
2518 4295 6.261826 TGCCTTAGTAAGTTCTCGTATACTCC 59.738 42.308 9.05 0.00 31.46 3.85
2519 4296 6.565623 GCCTTAGTAAGTTCTCGTATACTCCG 60.566 46.154 9.05 0.00 31.46 4.63
2520 4297 6.481644 CCTTAGTAAGTTCTCGTATACTCCGT 59.518 42.308 9.05 0.00 31.46 4.69
2521 4298 7.011857 CCTTAGTAAGTTCTCGTATACTCCGTT 59.988 40.741 9.05 0.00 31.46 4.44
2522 4299 6.356757 AGTAAGTTCTCGTATACTCCGTTC 57.643 41.667 0.56 0.00 0.00 3.95
2523 4300 4.629251 AAGTTCTCGTATACTCCGTTCC 57.371 45.455 0.56 0.00 0.00 3.62
2524 4301 2.611292 AGTTCTCGTATACTCCGTTCCG 59.389 50.000 0.56 0.00 0.00 4.30
2525 4302 2.602257 TCTCGTATACTCCGTTCCGA 57.398 50.000 0.56 0.00 0.00 4.55
2526 4303 2.905075 TCTCGTATACTCCGTTCCGAA 58.095 47.619 0.56 0.00 0.00 4.30
2527 4304 3.470709 TCTCGTATACTCCGTTCCGAAT 58.529 45.455 0.56 0.00 0.00 3.34
2528 4305 3.879295 TCTCGTATACTCCGTTCCGAATT 59.121 43.478 0.56 0.00 0.00 2.17
2529 4306 5.056480 TCTCGTATACTCCGTTCCGAATTA 58.944 41.667 0.56 0.00 0.00 1.40
2530 4307 5.050091 TCTCGTATACTCCGTTCCGAATTAC 60.050 44.000 0.56 0.00 0.00 1.89
2531 4308 4.816385 TCGTATACTCCGTTCCGAATTACT 59.184 41.667 0.56 0.00 0.00 2.24
2532 4309 5.296780 TCGTATACTCCGTTCCGAATTACTT 59.703 40.000 0.56 0.00 0.00 2.24
2533 4310 5.397534 CGTATACTCCGTTCCGAATTACTTG 59.602 44.000 0.56 0.00 0.00 3.16
2534 4311 3.672767 ACTCCGTTCCGAATTACTTGT 57.327 42.857 0.00 0.00 0.00 3.16
2535 4312 3.582780 ACTCCGTTCCGAATTACTTGTC 58.417 45.455 0.00 0.00 0.00 3.18
2536 4313 2.597305 CTCCGTTCCGAATTACTTGTCG 59.403 50.000 0.00 0.00 37.01 4.35
2537 4314 1.060122 CCGTTCCGAATTACTTGTCGC 59.940 52.381 0.00 0.00 35.93 5.19
2538 4315 1.722464 CGTTCCGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 35.93 5.10
2539 4316 2.347452 CGTTCCGAATTACTTGTCGCAT 59.653 45.455 0.00 0.00 35.93 4.73
2540 4317 3.670203 GTTCCGAATTACTTGTCGCATG 58.330 45.455 0.00 0.00 35.93 4.06
2541 4318 2.967362 TCCGAATTACTTGTCGCATGT 58.033 42.857 0.00 4.39 35.93 3.21
2542 4319 4.112716 TCCGAATTACTTGTCGCATGTA 57.887 40.909 0.00 2.87 35.93 2.29
2543 4320 4.689071 TCCGAATTACTTGTCGCATGTAT 58.311 39.130 0.00 0.00 35.93 2.29
2544 4321 4.506288 TCCGAATTACTTGTCGCATGTATG 59.494 41.667 0.00 0.00 35.93 2.39
2545 4322 4.318760 CCGAATTACTTGTCGCATGTATGG 60.319 45.833 0.00 4.42 35.93 2.74
2546 4323 4.270084 CGAATTACTTGTCGCATGTATGGT 59.730 41.667 0.00 0.00 0.00 3.55
2547 4324 5.220586 CGAATTACTTGTCGCATGTATGGTT 60.221 40.000 0.00 4.03 0.00 3.67
2548 4325 4.937696 TTACTTGTCGCATGTATGGTTG 57.062 40.909 0.00 0.00 0.00 3.77
2549 4326 2.778299 ACTTGTCGCATGTATGGTTGT 58.222 42.857 0.00 0.00 0.00 3.32
2550 4327 3.932822 ACTTGTCGCATGTATGGTTGTA 58.067 40.909 0.00 0.00 0.00 2.41
2551 4328 4.513442 ACTTGTCGCATGTATGGTTGTAT 58.487 39.130 0.00 0.00 0.00 2.29
2552 4329 4.570772 ACTTGTCGCATGTATGGTTGTATC 59.429 41.667 0.00 0.00 0.00 2.24
2553 4330 4.400529 TGTCGCATGTATGGTTGTATCT 57.599 40.909 0.00 0.00 0.00 1.98
2554 4331 5.523438 TGTCGCATGTATGGTTGTATCTA 57.477 39.130 0.00 0.00 0.00 1.98
2555 4332 5.528870 TGTCGCATGTATGGTTGTATCTAG 58.471 41.667 0.00 0.00 0.00 2.43
2556 4333 5.300792 TGTCGCATGTATGGTTGTATCTAGA 59.699 40.000 0.00 0.00 0.00 2.43
2557 4334 6.015434 TGTCGCATGTATGGTTGTATCTAGAT 60.015 38.462 10.73 10.73 0.00 1.98
2558 4335 6.309009 GTCGCATGTATGGTTGTATCTAGATG 59.691 42.308 15.79 0.00 0.00 2.90
2559 4336 6.015434 TCGCATGTATGGTTGTATCTAGATGT 60.015 38.462 15.79 0.00 0.00 3.06
2560 4337 7.175990 TCGCATGTATGGTTGTATCTAGATGTA 59.824 37.037 15.79 1.12 0.00 2.29
2561 4338 7.976175 CGCATGTATGGTTGTATCTAGATGTAT 59.024 37.037 15.79 3.61 0.00 2.29
2562 4339 9.658799 GCATGTATGGTTGTATCTAGATGTATT 57.341 33.333 15.79 0.00 0.00 1.89
2588 4365 9.547753 TTTAGTTCTAGATACATCCATTTCTGC 57.452 33.333 0.00 0.00 0.00 4.26
2589 4366 6.219473 AGTTCTAGATACATCCATTTCTGCG 58.781 40.000 0.00 0.00 0.00 5.18
2590 4367 6.040955 AGTTCTAGATACATCCATTTCTGCGA 59.959 38.462 0.00 0.00 0.00 5.10
2591 4368 5.773575 TCTAGATACATCCATTTCTGCGAC 58.226 41.667 0.00 0.00 0.00 5.19
2592 4369 4.406648 AGATACATCCATTTCTGCGACA 57.593 40.909 0.00 0.00 0.00 4.35
2593 4370 4.769688 AGATACATCCATTTCTGCGACAA 58.230 39.130 0.00 0.00 0.00 3.18
2594 4371 4.813161 AGATACATCCATTTCTGCGACAAG 59.187 41.667 0.00 0.00 0.00 3.16
2595 4372 2.783135 ACATCCATTTCTGCGACAAGT 58.217 42.857 0.00 0.00 0.00 3.16
2596 4373 3.937814 ACATCCATTTCTGCGACAAGTA 58.062 40.909 0.00 0.00 0.00 2.24
2597 4374 4.323417 ACATCCATTTCTGCGACAAGTAA 58.677 39.130 0.00 0.00 0.00 2.24
2598 4375 4.943705 ACATCCATTTCTGCGACAAGTAAT 59.056 37.500 0.00 0.00 0.00 1.89
2599 4376 5.415701 ACATCCATTTCTGCGACAAGTAATT 59.584 36.000 0.00 0.00 0.00 1.40
2600 4377 5.957842 TCCATTTCTGCGACAAGTAATTT 57.042 34.783 0.00 0.00 0.00 1.82
2601 4378 5.698832 TCCATTTCTGCGACAAGTAATTTG 58.301 37.500 0.00 0.00 42.68 2.32
2602 4379 4.858692 CCATTTCTGCGACAAGTAATTTGG 59.141 41.667 0.00 0.00 41.25 3.28
2603 4380 5.335583 CCATTTCTGCGACAAGTAATTTGGA 60.336 40.000 0.00 0.00 41.25 3.53
2604 4381 5.759506 TTTCTGCGACAAGTAATTTGGAA 57.240 34.783 0.00 0.00 41.25 3.53
2605 4382 4.742438 TCTGCGACAAGTAATTTGGAAC 57.258 40.909 0.00 0.00 41.25 3.62
2606 4383 3.185594 TCTGCGACAAGTAATTTGGAACG 59.814 43.478 0.00 0.00 41.25 3.95
2607 4384 2.224549 TGCGACAAGTAATTTGGAACGG 59.775 45.455 0.00 0.00 41.25 4.44
2608 4385 2.481185 GCGACAAGTAATTTGGAACGGA 59.519 45.455 0.00 0.00 41.25 4.69
2609 4386 3.424433 GCGACAAGTAATTTGGAACGGAG 60.424 47.826 0.00 0.00 41.25 4.63
2610 4387 3.124636 CGACAAGTAATTTGGAACGGAGG 59.875 47.826 0.00 0.00 41.25 4.30
2611 4388 3.418047 ACAAGTAATTTGGAACGGAGGG 58.582 45.455 0.00 0.00 41.25 4.30
2612 4389 3.073356 ACAAGTAATTTGGAACGGAGGGA 59.927 43.478 0.00 0.00 41.25 4.20
2613 4390 3.629142 AGTAATTTGGAACGGAGGGAG 57.371 47.619 0.00 0.00 0.00 4.30
2636 4413 4.078639 AGCTGTTAGCATAGAATCACCC 57.921 45.455 3.43 0.00 45.56 4.61
3199 4976 2.139323 ATGCAAGCATCATCACCAGT 57.861 45.000 0.86 0.00 29.42 4.00
3239 5016 2.433446 CCTGTCAGGCCTGTTGCT 59.567 61.111 31.58 0.00 40.92 3.91
3319 5096 2.632996 TGAAGGGTGACTCAAGTACCAG 59.367 50.000 0.00 0.00 36.19 4.00
3359 5136 1.934849 GCGTTGCCTCCAAATCCAAAC 60.935 52.381 0.00 0.00 31.68 2.93
3399 5176 1.551883 CTGCTTTCCATGGAAAAGGGG 59.448 52.381 33.74 24.69 42.61 4.79
3472 5249 8.322828 TGGCTAGACCTTTAATGTGTATGTAAA 58.677 33.333 0.00 0.00 40.22 2.01
3524 5303 7.792374 TGATATAGCTTTCTTGGTCATGTTC 57.208 36.000 0.00 0.00 0.00 3.18
3614 5393 7.350467 CCAAATTCACATCGATTCTCATACAG 58.650 38.462 0.00 0.00 0.00 2.74
3628 5407 5.766590 TCTCATACAGGACAGAGTTGGATA 58.233 41.667 0.00 0.00 0.00 2.59
3640 5419 4.327357 CAGAGTTGGATAGTTGCACTTACG 59.673 45.833 0.00 0.00 0.00 3.18
3666 5445 2.992543 TGCACATAATTTTTGCGCCTTC 59.007 40.909 4.18 0.00 39.22 3.46
3673 5452 2.264005 TTTTTGCGCCTTCCTGAGTA 57.736 45.000 4.18 0.00 0.00 2.59
3674 5453 2.489938 TTTTGCGCCTTCCTGAGTAT 57.510 45.000 4.18 0.00 0.00 2.12
3675 5454 3.620427 TTTTGCGCCTTCCTGAGTATA 57.380 42.857 4.18 0.00 0.00 1.47
3707 5486 5.010719 TCACAGGTTACCTCTACAACAGAAG 59.989 44.000 0.00 0.00 31.12 2.85
3718 5497 6.829298 CCTCTACAACAGAAGTAGTATCAGGA 59.171 42.308 0.00 0.00 39.86 3.86
3729 5508 5.580998 AGTAGTATCAGGACCACTCTTTCA 58.419 41.667 0.00 0.00 0.00 2.69
3745 5524 3.907474 TCTTTCATGTGGTTGAGGTAGGA 59.093 43.478 0.00 0.00 0.00 2.94
3765 5544 6.349243 AGGATTGAGCTATCTTGATCAGAG 57.651 41.667 0.00 0.00 33.87 3.35
3803 5582 9.996554 TTATGTATTGTTTCTTCAGAGTTCAGA 57.003 29.630 0.00 0.00 0.00 3.27
3804 5583 7.953158 TGTATTGTTTCTTCAGAGTTCAGAG 57.047 36.000 0.00 0.00 0.00 3.35
3805 5584 7.500992 TGTATTGTTTCTTCAGAGTTCAGAGT 58.499 34.615 0.00 0.00 0.00 3.24
3806 5585 6.857777 ATTGTTTCTTCAGAGTTCAGAGTG 57.142 37.500 0.00 0.00 0.00 3.51
3807 5586 4.122776 TGTTTCTTCAGAGTTCAGAGTGC 58.877 43.478 0.00 0.00 0.00 4.40
3808 5587 4.122776 GTTTCTTCAGAGTTCAGAGTGCA 58.877 43.478 0.00 0.00 0.00 4.57
3809 5588 4.613925 TTCTTCAGAGTTCAGAGTGCAT 57.386 40.909 0.00 0.00 0.00 3.96
3810 5589 4.613925 TCTTCAGAGTTCAGAGTGCATT 57.386 40.909 0.00 0.00 0.00 3.56
3811 5590 4.564041 TCTTCAGAGTTCAGAGTGCATTC 58.436 43.478 0.00 0.00 0.00 2.67
3812 5591 4.039609 TCTTCAGAGTTCAGAGTGCATTCA 59.960 41.667 12.16 0.00 0.00 2.57
3813 5592 3.922910 TCAGAGTTCAGAGTGCATTCAG 58.077 45.455 12.16 3.44 0.00 3.02
3814 5593 3.323115 TCAGAGTTCAGAGTGCATTCAGT 59.677 43.478 12.16 0.00 0.00 3.41
3815 5594 4.524328 TCAGAGTTCAGAGTGCATTCAGTA 59.476 41.667 12.16 0.00 0.00 2.74
3816 5595 4.624882 CAGAGTTCAGAGTGCATTCAGTAC 59.375 45.833 12.16 7.55 0.00 2.73
3817 5596 4.281941 AGAGTTCAGAGTGCATTCAGTACA 59.718 41.667 12.16 0.00 35.00 2.90
3818 5597 4.960938 AGTTCAGAGTGCATTCAGTACAA 58.039 39.130 12.16 0.00 35.00 2.41
3819 5598 4.752101 AGTTCAGAGTGCATTCAGTACAAC 59.248 41.667 12.16 4.57 35.00 3.32
3839 5618 9.649167 GTACAACCTGTTAGAGTGTATGTATTT 57.351 33.333 0.00 0.00 0.00 1.40
3840 5619 8.773404 ACAACCTGTTAGAGTGTATGTATTTC 57.227 34.615 0.00 0.00 0.00 2.17
3843 5622 6.672657 ACCTGTTAGAGTGTATGTATTTCCCT 59.327 38.462 0.00 0.00 0.00 4.20
3846 5625 8.598202 TGTTAGAGTGTATGTATTTCCCTGTA 57.402 34.615 0.00 0.00 0.00 2.74
3847 5626 9.038072 TGTTAGAGTGTATGTATTTCCCTGTAA 57.962 33.333 0.00 0.00 0.00 2.41
3859 5641 4.330944 TTCCCTGTAATACAGCGTATGG 57.669 45.455 14.60 10.04 44.63 2.74
3868 5650 1.878522 CAGCGTATGGAGCACGACC 60.879 63.158 0.00 0.00 41.91 4.79
3919 5701 3.031417 ATGTAGCCAGCCCACGTCC 62.031 63.158 0.00 0.00 0.00 4.79
3920 5702 4.468689 GTAGCCAGCCCACGTCCC 62.469 72.222 0.00 0.00 0.00 4.46
3921 5703 4.715130 TAGCCAGCCCACGTCCCT 62.715 66.667 0.00 0.00 0.00 4.20
3925 5707 4.415150 CAGCCCACGTCCCTGCAT 62.415 66.667 0.00 0.00 0.00 3.96
3926 5708 4.415150 AGCCCACGTCCCTGCATG 62.415 66.667 0.00 0.00 0.00 4.06
4016 5836 1.892391 GCCGACCGGATCAATTCCC 60.892 63.158 9.46 0.00 42.06 3.97
4028 5848 2.917897 AATTCCCTTGCTCCGGCCA 61.918 57.895 2.24 0.00 37.74 5.36
4089 5909 3.559597 CCCCTATCTACTACCTCTGACGG 60.560 56.522 0.00 0.00 0.00 4.79
4091 5911 1.984066 ATCTACTACCTCTGACGGCC 58.016 55.000 0.00 0.00 0.00 6.13
4093 5913 1.076485 TACTACCTCTGACGGCCCC 60.076 63.158 0.00 0.00 0.00 5.80
4108 5928 2.436646 CCCGGCGCTTCTGATGTT 60.437 61.111 7.64 0.00 0.00 2.71
4113 5933 0.109597 GGCGCTTCTGATGTTGTTGG 60.110 55.000 7.64 0.00 0.00 3.77
4115 5935 1.238439 CGCTTCTGATGTTGTTGGGT 58.762 50.000 0.00 0.00 0.00 4.51
4118 5938 1.197721 CTTCTGATGTTGTTGGGTCGC 59.802 52.381 0.00 0.00 0.00 5.19
4138 6078 1.610673 TCCACCACCTCCTGCTCTC 60.611 63.158 0.00 0.00 0.00 3.20
4164 6104 3.461773 CGCCCCTGTCTCCATCGT 61.462 66.667 0.00 0.00 0.00 3.73
4165 6105 2.501610 GCCCCTGTCTCCATCGTC 59.498 66.667 0.00 0.00 0.00 4.20
4166 6106 2.359169 GCCCCTGTCTCCATCGTCA 61.359 63.158 0.00 0.00 0.00 4.35
4193 6139 4.408821 CTGTTGCTGCCCGGCCTA 62.409 66.667 7.03 0.00 0.00 3.93
4251 6219 2.369629 CGACATTCGCCGTCACGTT 61.370 57.895 0.00 0.00 31.14 3.99
4314 6282 2.661537 CGCCACTTCGACACTGCA 60.662 61.111 0.00 0.00 0.00 4.41
4352 6320 3.630148 CGATCATGTGGACGCCGC 61.630 66.667 0.00 2.92 34.12 6.53
4353 6321 2.202932 GATCATGTGGACGCCGCT 60.203 61.111 10.13 0.00 34.70 5.52
4425 6393 1.149174 CCACTGGCTCAACACCACT 59.851 57.895 0.00 0.00 32.49 4.00
4427 6395 1.526917 ACTGGCTCAACACCACTGC 60.527 57.895 0.00 0.00 32.49 4.40
4440 6408 3.147595 ACTGCCGCGCCTGATCTA 61.148 61.111 0.00 0.00 0.00 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 9.420118 TGGCATTGTTCTCATATTAAAAGGTAT 57.580 29.630 0.00 0.00 0.00 2.73
11 12 8.815565 TGGCATTGTTCTCATATTAAAAGGTA 57.184 30.769 0.00 0.00 0.00 3.08
12 13 7.716799 TGGCATTGTTCTCATATTAAAAGGT 57.283 32.000 0.00 0.00 0.00 3.50
13 14 8.253113 AGTTGGCATTGTTCTCATATTAAAAGG 58.747 33.333 0.00 0.00 0.00 3.11
14 15 9.643693 AAGTTGGCATTGTTCTCATATTAAAAG 57.356 29.630 0.00 0.00 0.00 2.27
17 18 8.405531 GCTAAGTTGGCATTGTTCTCATATTAA 58.594 33.333 6.31 0.00 0.00 1.40
18 19 7.555914 TGCTAAGTTGGCATTGTTCTCATATTA 59.444 33.333 10.19 0.00 34.56 0.98
19 20 6.377996 TGCTAAGTTGGCATTGTTCTCATATT 59.622 34.615 10.19 0.00 34.56 1.28
20 21 5.887598 TGCTAAGTTGGCATTGTTCTCATAT 59.112 36.000 10.19 0.00 34.56 1.78
21 22 5.252547 TGCTAAGTTGGCATTGTTCTCATA 58.747 37.500 10.19 0.00 34.56 2.15
22 23 4.081406 TGCTAAGTTGGCATTGTTCTCAT 58.919 39.130 10.19 0.00 34.56 2.90
23 24 3.485394 TGCTAAGTTGGCATTGTTCTCA 58.515 40.909 10.19 0.00 34.56 3.27
24 25 4.418392 CATGCTAAGTTGGCATTGTTCTC 58.582 43.478 22.64 0.00 46.62 2.87
25 26 3.367703 GCATGCTAAGTTGGCATTGTTCT 60.368 43.478 22.64 0.33 46.62 3.01
26 27 2.925563 GCATGCTAAGTTGGCATTGTTC 59.074 45.455 22.64 9.64 46.62 3.18
27 28 2.299582 TGCATGCTAAGTTGGCATTGTT 59.700 40.909 22.64 1.48 46.62 2.83
28 29 1.894466 TGCATGCTAAGTTGGCATTGT 59.106 42.857 22.64 1.86 46.62 2.71
29 30 2.658373 TGCATGCTAAGTTGGCATTG 57.342 45.000 22.64 17.98 46.62 2.82
30 31 3.449737 AGATTGCATGCTAAGTTGGCATT 59.550 39.130 22.64 9.68 46.62 3.56
32 33 2.449464 AGATTGCATGCTAAGTTGGCA 58.551 42.857 20.33 16.79 44.05 4.92
33 34 3.184541 CAAGATTGCATGCTAAGTTGGC 58.815 45.455 20.33 3.92 0.00 4.52
34 35 4.445452 ACAAGATTGCATGCTAAGTTGG 57.555 40.909 20.33 5.76 0.00 3.77
35 36 6.788243 TCATACAAGATTGCATGCTAAGTTG 58.212 36.000 20.33 19.26 33.06 3.16
36 37 7.395190 TTCATACAAGATTGCATGCTAAGTT 57.605 32.000 20.33 6.39 33.06 2.66
37 38 7.395190 TTTCATACAAGATTGCATGCTAAGT 57.605 32.000 20.33 11.35 33.06 2.24
38 39 8.692110 TTTTTCATACAAGATTGCATGCTAAG 57.308 30.769 20.33 6.03 33.06 2.18
40 41 9.734620 GTATTTTTCATACAAGATTGCATGCTA 57.265 29.630 20.33 12.49 33.06 3.49
41 42 7.707893 GGTATTTTTCATACAAGATTGCATGCT 59.292 33.333 20.33 0.00 33.06 3.79
42 43 7.492020 TGGTATTTTTCATACAAGATTGCATGC 59.508 33.333 11.82 11.82 33.06 4.06
43 44 8.929827 TGGTATTTTTCATACAAGATTGCATG 57.070 30.769 0.15 0.15 34.07 4.06
44 45 9.754382 GATGGTATTTTTCATACAAGATTGCAT 57.246 29.630 0.00 0.00 0.00 3.96
45 46 8.970020 AGATGGTATTTTTCATACAAGATTGCA 58.030 29.630 0.00 0.00 0.00 4.08
46 47 9.455847 GAGATGGTATTTTTCATACAAGATTGC 57.544 33.333 0.00 0.00 0.00 3.56
79 80 2.766828 TCTTTTTCTTCCCCCGCAAAAA 59.233 40.909 0.00 0.00 0.00 1.94
80 81 2.101750 GTCTTTTTCTTCCCCCGCAAAA 59.898 45.455 0.00 0.00 0.00 2.44
81 82 1.684450 GTCTTTTTCTTCCCCCGCAAA 59.316 47.619 0.00 0.00 0.00 3.68
82 83 1.324383 GTCTTTTTCTTCCCCCGCAA 58.676 50.000 0.00 0.00 0.00 4.85
83 84 0.538746 GGTCTTTTTCTTCCCCCGCA 60.539 55.000 0.00 0.00 0.00 5.69
84 85 0.538746 TGGTCTTTTTCTTCCCCCGC 60.539 55.000 0.00 0.00 0.00 6.13
85 86 2.215942 ATGGTCTTTTTCTTCCCCCG 57.784 50.000 0.00 0.00 0.00 5.73
86 87 3.901222 TGAAATGGTCTTTTTCTTCCCCC 59.099 43.478 0.00 0.00 34.80 5.40
87 88 5.545063 TTGAAATGGTCTTTTTCTTCCCC 57.455 39.130 0.00 0.00 34.80 4.81
88 89 7.278646 GCATATTGAAATGGTCTTTTTCTTCCC 59.721 37.037 0.00 0.00 34.80 3.97
89 90 7.818930 TGCATATTGAAATGGTCTTTTTCTTCC 59.181 33.333 0.00 0.00 34.80 3.46
90 91 8.761575 TGCATATTGAAATGGTCTTTTTCTTC 57.238 30.769 0.00 0.00 34.80 2.87
91 92 8.992073 GTTGCATATTGAAATGGTCTTTTTCTT 58.008 29.630 0.00 0.00 34.80 2.52
92 93 8.370182 AGTTGCATATTGAAATGGTCTTTTTCT 58.630 29.630 0.00 0.00 34.80 2.52
105 106 7.851387 TTTCCGTGTATAGTTGCATATTGAA 57.149 32.000 0.00 0.00 0.00 2.69
245 247 7.151999 TCGGTTGCAATATATTTCAACTTGT 57.848 32.000 28.26 0.00 41.49 3.16
284 286 4.736611 ATATGTAGGAACGGAGGGAGTA 57.263 45.455 0.00 0.00 0.00 2.59
285 287 3.614568 ATATGTAGGAACGGAGGGAGT 57.385 47.619 0.00 0.00 0.00 3.85
286 288 5.017490 ACATATATGTAGGAACGGAGGGAG 58.983 45.833 16.85 0.00 39.68 4.30
287 289 5.006896 ACATATATGTAGGAACGGAGGGA 57.993 43.478 16.85 0.00 39.68 4.20
288 290 5.017490 AGACATATATGTAGGAACGGAGGG 58.983 45.833 18.28 0.00 41.95 4.30
289 291 6.591750 AAGACATATATGTAGGAACGGAGG 57.408 41.667 18.28 0.00 41.95 4.30
290 292 7.887381 AGAAAGACATATATGTAGGAACGGAG 58.113 38.462 18.28 0.00 41.95 4.63
291 293 7.834881 AGAAAGACATATATGTAGGAACGGA 57.165 36.000 18.28 0.00 41.95 4.69
307 309 9.996554 TCACTTGTTGAAATCTATAGAAAGACA 57.003 29.630 6.52 5.32 0.00 3.41
316 318 9.302345 CGTATGTAGTCACTTGTTGAAATCTAT 57.698 33.333 0.00 0.00 35.39 1.98
317 319 8.517056 TCGTATGTAGTCACTTGTTGAAATCTA 58.483 33.333 0.00 0.00 35.39 1.98
318 320 7.375834 TCGTATGTAGTCACTTGTTGAAATCT 58.624 34.615 0.00 0.00 35.39 2.40
319 321 7.576750 TCGTATGTAGTCACTTGTTGAAATC 57.423 36.000 0.00 0.00 35.39 2.17
320 322 7.956420 TTCGTATGTAGTCACTTGTTGAAAT 57.044 32.000 0.00 0.00 35.39 2.17
321 323 7.278203 TGTTTCGTATGTAGTCACTTGTTGAAA 59.722 33.333 0.00 0.00 35.39 2.69
322 324 6.757478 TGTTTCGTATGTAGTCACTTGTTGAA 59.243 34.615 0.00 0.00 35.39 2.69
323 325 6.274579 TGTTTCGTATGTAGTCACTTGTTGA 58.725 36.000 0.00 0.00 0.00 3.18
324 326 6.519353 TGTTTCGTATGTAGTCACTTGTTG 57.481 37.500 0.00 0.00 0.00 3.33
325 327 7.542534 TTTGTTTCGTATGTAGTCACTTGTT 57.457 32.000 0.00 0.00 0.00 2.83
326 328 7.542534 TTTTGTTTCGTATGTAGTCACTTGT 57.457 32.000 0.00 0.00 0.00 3.16
327 329 8.279800 TCATTTTGTTTCGTATGTAGTCACTTG 58.720 33.333 0.00 0.00 0.00 3.16
328 330 8.373048 TCATTTTGTTTCGTATGTAGTCACTT 57.627 30.769 0.00 0.00 0.00 3.16
329 331 7.656137 ACTCATTTTGTTTCGTATGTAGTCACT 59.344 33.333 0.00 0.00 0.00 3.41
330 332 7.740346 CACTCATTTTGTTTCGTATGTAGTCAC 59.260 37.037 0.00 0.00 0.00 3.67
331 333 7.654116 TCACTCATTTTGTTTCGTATGTAGTCA 59.346 33.333 0.00 0.00 0.00 3.41
332 334 8.014322 TCACTCATTTTGTTTCGTATGTAGTC 57.986 34.615 0.00 0.00 0.00 2.59
333 335 7.956420 TCACTCATTTTGTTTCGTATGTAGT 57.044 32.000 0.00 0.00 0.00 2.73
334 336 9.478019 GATTCACTCATTTTGTTTCGTATGTAG 57.522 33.333 0.00 0.00 0.00 2.74
335 337 9.214957 AGATTCACTCATTTTGTTTCGTATGTA 57.785 29.630 0.00 0.00 0.00 2.29
336 338 8.099364 AGATTCACTCATTTTGTTTCGTATGT 57.901 30.769 0.00 0.00 0.00 2.29
340 342 9.436957 AGTATAGATTCACTCATTTTGTTTCGT 57.563 29.630 0.00 0.00 0.00 3.85
341 343 9.907576 GAGTATAGATTCACTCATTTTGTTTCG 57.092 33.333 0.00 0.00 40.74 3.46
373 375 9.566432 TGCAACATATGGATGTATGTAAACATA 57.434 29.630 7.80 0.00 45.93 2.29
374 376 8.462589 TGCAACATATGGATGTATGTAAACAT 57.537 30.769 7.80 0.63 45.93 2.71
375 377 7.872113 TGCAACATATGGATGTATGTAAACA 57.128 32.000 7.80 0.00 45.93 2.83
376 378 9.398170 GATTGCAACATATGGATGTATGTAAAC 57.602 33.333 0.00 0.00 45.93 2.01
377 379 8.575589 GGATTGCAACATATGGATGTATGTAAA 58.424 33.333 0.00 0.00 45.93 2.01
378 380 7.723172 TGGATTGCAACATATGGATGTATGTAA 59.277 33.333 0.00 2.97 45.93 2.41
379 381 7.230027 TGGATTGCAACATATGGATGTATGTA 58.770 34.615 0.00 0.00 45.93 2.29
380 382 6.069994 TGGATTGCAACATATGGATGTATGT 58.930 36.000 0.00 0.00 45.93 2.29
381 383 6.578163 TGGATTGCAACATATGGATGTATG 57.422 37.500 0.00 0.00 45.93 2.39
382 384 7.786046 AATGGATTGCAACATATGGATGTAT 57.214 32.000 0.00 4.43 45.93 2.29
383 385 7.287235 TCAAATGGATTGCAACATATGGATGTA 59.713 33.333 0.00 2.68 41.00 2.29
384 386 6.098552 TCAAATGGATTGCAACATATGGATGT 59.901 34.615 0.00 0.00 42.37 3.06
385 387 6.517605 TCAAATGGATTGCAACATATGGATG 58.482 36.000 0.00 7.01 38.98 3.51
386 388 6.734502 TCAAATGGATTGCAACATATGGAT 57.265 33.333 0.00 0.00 38.98 3.41
387 389 6.541934 TTCAAATGGATTGCAACATATGGA 57.458 33.333 0.00 0.00 38.98 3.41
388 390 7.281324 ACATTTCAAATGGATTGCAACATATGG 59.719 33.333 14.70 0.00 38.98 2.74
389 391 8.203937 ACATTTCAAATGGATTGCAACATATG 57.796 30.769 14.70 0.00 38.98 1.78
390 392 8.262227 AGACATTTCAAATGGATTGCAACATAT 58.738 29.630 14.70 0.00 38.98 1.78
391 393 7.613585 AGACATTTCAAATGGATTGCAACATA 58.386 30.769 14.70 0.00 38.98 2.29
392 394 6.469410 AGACATTTCAAATGGATTGCAACAT 58.531 32.000 14.70 0.00 38.98 2.71
393 395 5.856156 AGACATTTCAAATGGATTGCAACA 58.144 33.333 14.70 0.00 38.98 3.33
394 396 7.887996 TTAGACATTTCAAATGGATTGCAAC 57.112 32.000 14.70 0.00 38.98 4.17
395 397 8.899427 TTTTAGACATTTCAAATGGATTGCAA 57.101 26.923 14.70 0.00 38.98 4.08
396 398 8.899427 TTTTTAGACATTTCAAATGGATTGCA 57.101 26.923 14.70 0.00 38.98 4.08
397 399 9.206870 TCTTTTTAGACATTTCAAATGGATTGC 57.793 29.630 14.70 0.00 38.98 3.56
418 420 9.907229 CCCTCTGTTCCTAAATATAAGTCTTTT 57.093 33.333 0.00 0.00 0.00 2.27
419 421 9.280456 TCCCTCTGTTCCTAAATATAAGTCTTT 57.720 33.333 0.00 0.00 0.00 2.52
420 422 8.855804 TCCCTCTGTTCCTAAATATAAGTCTT 57.144 34.615 0.00 0.00 0.00 3.01
421 423 8.855804 TTCCCTCTGTTCCTAAATATAAGTCT 57.144 34.615 0.00 0.00 0.00 3.24
428 430 9.225682 AGAATGTATTCCCTCTGTTCCTAAATA 57.774 33.333 1.16 0.00 37.51 1.40
429 431 8.107196 AGAATGTATTCCCTCTGTTCCTAAAT 57.893 34.615 1.16 0.00 37.51 1.40
430 432 7.510675 AGAATGTATTCCCTCTGTTCCTAAA 57.489 36.000 1.16 0.00 37.51 1.85
431 433 8.618240 TTAGAATGTATTCCCTCTGTTCCTAA 57.382 34.615 1.16 0.00 37.51 2.69
432 434 8.798975 ATTAGAATGTATTCCCTCTGTTCCTA 57.201 34.615 1.16 0.00 37.51 2.94
433 435 7.698163 ATTAGAATGTATTCCCTCTGTTCCT 57.302 36.000 1.16 0.00 37.51 3.36
434 436 8.753497 AAATTAGAATGTATTCCCTCTGTTCC 57.247 34.615 1.16 0.00 37.51 3.62
436 438 8.470002 GCAAAATTAGAATGTATTCCCTCTGTT 58.530 33.333 1.16 0.00 37.51 3.16
437 439 7.068716 GGCAAAATTAGAATGTATTCCCTCTGT 59.931 37.037 1.16 0.00 37.51 3.41
438 440 7.286316 AGGCAAAATTAGAATGTATTCCCTCTG 59.714 37.037 1.16 0.00 37.51 3.35
439 441 7.357471 AGGCAAAATTAGAATGTATTCCCTCT 58.643 34.615 1.16 0.00 37.51 3.69
440 442 7.588497 AGGCAAAATTAGAATGTATTCCCTC 57.412 36.000 1.16 0.00 37.51 4.30
441 443 9.660544 ATTAGGCAAAATTAGAATGTATTCCCT 57.339 29.630 1.16 1.72 37.51 4.20
462 464 6.364701 TGAGATTGGTGGTCCATTTATTAGG 58.635 40.000 0.00 0.00 43.91 2.69
536 538 9.950496 AGTATATGATGTGGATTCTTTGTATCC 57.050 33.333 0.00 0.00 41.63 2.59
597 2346 8.547967 AAATAAATACTACTGGTATGGATGCG 57.452 34.615 0.00 0.00 40.62 4.73
699 2449 4.997545 TTGTACAGCCTACCCCTAAAAA 57.002 40.909 0.00 0.00 0.00 1.94
700 2450 6.618196 AGATATTGTACAGCCTACCCCTAAAA 59.382 38.462 0.00 0.00 0.00 1.52
701 2451 6.042781 CAGATATTGTACAGCCTACCCCTAAA 59.957 42.308 0.00 0.00 0.00 1.85
702 2452 5.542635 CAGATATTGTACAGCCTACCCCTAA 59.457 44.000 0.00 0.00 0.00 2.69
703 2453 5.084519 CAGATATTGTACAGCCTACCCCTA 58.915 45.833 0.00 0.00 0.00 3.53
704 2454 3.904339 CAGATATTGTACAGCCTACCCCT 59.096 47.826 0.00 0.00 0.00 4.79
705 2455 3.008049 CCAGATATTGTACAGCCTACCCC 59.992 52.174 0.00 0.00 0.00 4.95
706 2456 3.646637 ACCAGATATTGTACAGCCTACCC 59.353 47.826 0.00 0.00 0.00 3.69
707 2457 4.503296 CCACCAGATATTGTACAGCCTACC 60.503 50.000 0.00 0.00 0.00 3.18
708 2458 4.632153 CCACCAGATATTGTACAGCCTAC 58.368 47.826 0.00 0.00 0.00 3.18
709 2459 3.071023 GCCACCAGATATTGTACAGCCTA 59.929 47.826 0.00 0.00 0.00 3.93
710 2460 2.158755 GCCACCAGATATTGTACAGCCT 60.159 50.000 0.00 0.00 0.00 4.58
711 2461 2.222027 GCCACCAGATATTGTACAGCC 58.778 52.381 0.00 0.00 0.00 4.85
712 2462 2.917933 TGCCACCAGATATTGTACAGC 58.082 47.619 0.00 0.00 0.00 4.40
713 2463 4.454678 ACATGCCACCAGATATTGTACAG 58.545 43.478 0.00 0.00 0.00 2.74
714 2464 4.164030 AGACATGCCACCAGATATTGTACA 59.836 41.667 0.00 0.00 0.00 2.90
715 2465 4.708177 AGACATGCCACCAGATATTGTAC 58.292 43.478 0.00 0.00 0.00 2.90
716 2466 5.104569 TCAAGACATGCCACCAGATATTGTA 60.105 40.000 0.00 0.00 0.00 2.41
717 2467 3.939740 AGACATGCCACCAGATATTGT 57.060 42.857 0.00 0.00 0.00 2.71
718 2468 4.036027 GTCAAGACATGCCACCAGATATTG 59.964 45.833 0.00 0.00 0.00 1.90
719 2469 4.080129 AGTCAAGACATGCCACCAGATATT 60.080 41.667 2.72 0.00 0.00 1.28
720 2470 3.457380 AGTCAAGACATGCCACCAGATAT 59.543 43.478 2.72 0.00 0.00 1.63
865 2615 2.125350 GAGGGAGAGGCAAGCGTG 60.125 66.667 0.00 0.00 0.00 5.34
1276 3026 6.721668 ACAGGGGAGAGAAGGAAAATAAAAAG 59.278 38.462 0.00 0.00 0.00 2.27
1313 3063 6.581171 ACAAAACAAAGAATCTCATCTCCC 57.419 37.500 0.00 0.00 0.00 4.30
1390 3141 2.370849 ACGTAAAGAACATCACAGGGGT 59.629 45.455 0.00 0.00 0.00 4.95
1393 3144 7.811236 TCTTAACTACGTAAAGAACATCACAGG 59.189 37.037 5.86 0.00 0.00 4.00
1603 3354 1.134907 ACCACTAGGCATCGTAAACCG 60.135 52.381 0.00 0.00 39.06 4.44
1660 3411 7.549615 ACTAAACACTAAAACAGGTCTCAAC 57.450 36.000 0.00 0.00 0.00 3.18
1667 3418 8.154649 AGTGATGAACTAAACACTAAAACAGG 57.845 34.615 0.00 0.00 40.96 4.00
1670 3421 9.783256 ACAAAGTGATGAACTAAACACTAAAAC 57.217 29.630 0.00 0.00 41.73 2.43
1853 3605 2.076863 ACAGCGGAATAGAAGCACAAC 58.923 47.619 0.00 0.00 0.00 3.32
2045 3797 4.250464 CAAGCATGAAGTTGCATGGAAAT 58.750 39.130 0.00 0.00 45.23 2.17
2054 3806 9.844790 TCATAATAAAGAACAAGCATGAAGTTG 57.155 29.630 0.00 0.00 0.00 3.16
2415 4192 6.234920 TGTTTGCCTAAGTACAATCAGCTAA 58.765 36.000 0.00 0.00 0.00 3.09
2416 4193 5.800296 TGTTTGCCTAAGTACAATCAGCTA 58.200 37.500 0.00 0.00 0.00 3.32
2426 4203 1.996898 CGCGACATGTTTGCCTAAGTA 59.003 47.619 15.73 0.00 0.00 2.24
2519 4296 3.124636 ACATGCGACAAGTAATTCGGAAC 59.875 43.478 0.00 0.00 39.13 3.62
2520 4297 3.331150 ACATGCGACAAGTAATTCGGAA 58.669 40.909 0.00 0.00 39.13 4.30
2521 4298 2.967362 ACATGCGACAAGTAATTCGGA 58.033 42.857 0.00 0.00 40.02 4.55
2522 4299 4.318760 CCATACATGCGACAAGTAATTCGG 60.319 45.833 0.00 0.00 35.73 4.30
2523 4300 4.270084 ACCATACATGCGACAAGTAATTCG 59.730 41.667 0.00 0.00 38.31 3.34
2524 4301 5.734855 ACCATACATGCGACAAGTAATTC 57.265 39.130 0.00 0.00 0.00 2.17
2525 4302 5.414454 ACAACCATACATGCGACAAGTAATT 59.586 36.000 0.00 0.00 0.00 1.40
2526 4303 4.941263 ACAACCATACATGCGACAAGTAAT 59.059 37.500 0.00 0.00 0.00 1.89
2527 4304 4.320023 ACAACCATACATGCGACAAGTAA 58.680 39.130 0.00 0.00 0.00 2.24
2528 4305 3.932822 ACAACCATACATGCGACAAGTA 58.067 40.909 0.00 0.00 0.00 2.24
2529 4306 2.778299 ACAACCATACATGCGACAAGT 58.222 42.857 0.00 0.00 0.00 3.16
2530 4307 4.811024 AGATACAACCATACATGCGACAAG 59.189 41.667 0.00 0.00 0.00 3.16
2531 4308 4.765273 AGATACAACCATACATGCGACAA 58.235 39.130 0.00 0.00 0.00 3.18
2532 4309 4.400529 AGATACAACCATACATGCGACA 57.599 40.909 0.00 0.00 0.00 4.35
2533 4310 5.769367 TCTAGATACAACCATACATGCGAC 58.231 41.667 0.00 0.00 0.00 5.19
2534 4311 6.015434 ACATCTAGATACAACCATACATGCGA 60.015 38.462 4.54 0.00 0.00 5.10
2535 4312 6.159293 ACATCTAGATACAACCATACATGCG 58.841 40.000 4.54 0.00 0.00 4.73
2536 4313 9.658799 AATACATCTAGATACAACCATACATGC 57.341 33.333 4.54 0.00 0.00 4.06
2562 4339 9.547753 GCAGAAATGGATGTATCTAGAACTAAA 57.452 33.333 0.00 0.00 0.00 1.85
2563 4340 7.867909 CGCAGAAATGGATGTATCTAGAACTAA 59.132 37.037 0.00 0.00 0.00 2.24
2564 4341 7.230712 TCGCAGAAATGGATGTATCTAGAACTA 59.769 37.037 0.00 0.00 0.00 2.24
2565 4342 6.040955 TCGCAGAAATGGATGTATCTAGAACT 59.959 38.462 0.00 0.00 0.00 3.01
2566 4343 6.144724 GTCGCAGAAATGGATGTATCTAGAAC 59.855 42.308 0.00 0.00 39.69 3.01
2567 4344 6.183360 TGTCGCAGAAATGGATGTATCTAGAA 60.183 38.462 0.00 0.00 39.69 2.10
2568 4345 5.301805 TGTCGCAGAAATGGATGTATCTAGA 59.698 40.000 0.00 0.00 39.69 2.43
2569 4346 5.532557 TGTCGCAGAAATGGATGTATCTAG 58.467 41.667 0.00 0.00 39.69 2.43
2570 4347 5.529581 TGTCGCAGAAATGGATGTATCTA 57.470 39.130 0.00 0.00 39.69 1.98
2571 4348 4.406648 TGTCGCAGAAATGGATGTATCT 57.593 40.909 0.00 0.00 39.69 1.98
2572 4349 4.572389 ACTTGTCGCAGAAATGGATGTATC 59.428 41.667 0.00 0.00 39.69 2.24
2573 4350 4.517285 ACTTGTCGCAGAAATGGATGTAT 58.483 39.130 0.00 0.00 39.69 2.29
2574 4351 3.937814 ACTTGTCGCAGAAATGGATGTA 58.062 40.909 0.00 0.00 39.69 2.29
2575 4352 2.783135 ACTTGTCGCAGAAATGGATGT 58.217 42.857 0.00 0.00 39.69 3.06
2576 4353 4.944962 TTACTTGTCGCAGAAATGGATG 57.055 40.909 0.00 0.00 39.69 3.51
2577 4354 6.324819 CAAATTACTTGTCGCAGAAATGGAT 58.675 36.000 0.00 0.00 39.69 3.41
2578 4355 5.335583 CCAAATTACTTGTCGCAGAAATGGA 60.336 40.000 0.00 0.00 39.69 3.41
2579 4356 4.858692 CCAAATTACTTGTCGCAGAAATGG 59.141 41.667 0.00 0.00 39.69 3.16
2580 4357 5.698832 TCCAAATTACTTGTCGCAGAAATG 58.301 37.500 0.00 0.00 39.69 2.32
2581 4358 5.957842 TCCAAATTACTTGTCGCAGAAAT 57.042 34.783 0.00 0.00 39.69 2.17
2582 4359 5.516090 GTTCCAAATTACTTGTCGCAGAAA 58.484 37.500 0.00 0.00 39.69 2.52
2583 4360 4.319190 CGTTCCAAATTACTTGTCGCAGAA 60.319 41.667 0.00 0.00 39.69 3.02
2584 4361 3.185594 CGTTCCAAATTACTTGTCGCAGA 59.814 43.478 0.00 0.00 32.65 4.26
2585 4362 3.479006 CGTTCCAAATTACTTGTCGCAG 58.521 45.455 0.00 0.00 32.65 5.18
2586 4363 2.224549 CCGTTCCAAATTACTTGTCGCA 59.775 45.455 0.00 0.00 32.65 5.10
2587 4364 2.481185 TCCGTTCCAAATTACTTGTCGC 59.519 45.455 0.00 0.00 32.65 5.19
2588 4365 3.124636 CCTCCGTTCCAAATTACTTGTCG 59.875 47.826 0.00 0.00 32.65 4.35
2589 4366 3.439129 CCCTCCGTTCCAAATTACTTGTC 59.561 47.826 0.00 0.00 32.65 3.18
2590 4367 3.073356 TCCCTCCGTTCCAAATTACTTGT 59.927 43.478 0.00 0.00 32.65 3.16
2591 4368 3.681593 TCCCTCCGTTCCAAATTACTTG 58.318 45.455 0.00 0.00 34.52 3.16
2592 4369 3.329814 ACTCCCTCCGTTCCAAATTACTT 59.670 43.478 0.00 0.00 0.00 2.24
2593 4370 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
2594 4371 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
2595 4372 3.118519 GCTACTCCCTCCGTTCCAAATTA 60.119 47.826 0.00 0.00 0.00 1.40
2596 4373 2.355818 GCTACTCCCTCCGTTCCAAATT 60.356 50.000 0.00 0.00 0.00 1.82
2597 4374 1.209747 GCTACTCCCTCCGTTCCAAAT 59.790 52.381 0.00 0.00 0.00 2.32
2598 4375 0.611714 GCTACTCCCTCCGTTCCAAA 59.388 55.000 0.00 0.00 0.00 3.28
2599 4376 0.252103 AGCTACTCCCTCCGTTCCAA 60.252 55.000 0.00 0.00 0.00 3.53
2600 4377 0.970937 CAGCTACTCCCTCCGTTCCA 60.971 60.000 0.00 0.00 0.00 3.53
2601 4378 0.971447 ACAGCTACTCCCTCCGTTCC 60.971 60.000 0.00 0.00 0.00 3.62
2602 4379 0.896226 AACAGCTACTCCCTCCGTTC 59.104 55.000 0.00 0.00 0.00 3.95
2603 4380 2.100989 CTAACAGCTACTCCCTCCGTT 58.899 52.381 0.00 0.00 0.00 4.44
2604 4381 1.765230 CTAACAGCTACTCCCTCCGT 58.235 55.000 0.00 0.00 0.00 4.69
2605 4382 0.386113 GCTAACAGCTACTCCCTCCG 59.614 60.000 0.00 0.00 38.45 4.63
2606 4383 1.486211 TGCTAACAGCTACTCCCTCC 58.514 55.000 0.00 0.00 42.97 4.30
2607 4384 4.145807 TCTATGCTAACAGCTACTCCCTC 58.854 47.826 0.00 0.00 42.97 4.30
2608 4385 4.186077 TCTATGCTAACAGCTACTCCCT 57.814 45.455 0.00 0.00 42.97 4.20
2609 4386 4.939052 TTCTATGCTAACAGCTACTCCC 57.061 45.455 0.00 0.00 42.97 4.30
2610 4387 5.923684 GTGATTCTATGCTAACAGCTACTCC 59.076 44.000 0.00 0.00 42.97 3.85
2611 4388 5.923684 GGTGATTCTATGCTAACAGCTACTC 59.076 44.000 0.00 0.00 42.97 2.59
2612 4389 5.221541 GGGTGATTCTATGCTAACAGCTACT 60.222 44.000 0.00 0.00 42.97 2.57
2613 4390 4.991687 GGGTGATTCTATGCTAACAGCTAC 59.008 45.833 0.00 0.00 42.97 3.58
2681 4458 5.963865 ACTGGGGGACAAGCAATAAATATTT 59.036 36.000 5.89 5.89 0.00 1.40
3199 4976 4.631377 GCTCATGTGATGCTTGTACTGTAA 59.369 41.667 0.00 0.00 0.00 2.41
3239 5016 2.607750 GGGGGAGCTGAGTGGACA 60.608 66.667 0.00 0.00 0.00 4.02
3359 5136 1.333636 ATTGCCTCTCTGGTCTCCCG 61.334 60.000 0.00 0.00 38.35 5.14
3524 5303 7.597743 ACAGACTAACAGTAAATTTACTCACGG 59.402 37.037 24.77 16.93 41.82 4.94
3614 5393 3.003480 GTGCAACTATCCAACTCTGTCC 58.997 50.000 0.00 0.00 0.00 4.02
3674 5453 9.483489 TGTAGAGGTAACCTGTGAGATTTATTA 57.517 33.333 0.00 0.00 31.76 0.98
3675 5454 8.375493 TGTAGAGGTAACCTGTGAGATTTATT 57.625 34.615 0.00 0.00 31.76 1.40
3707 5486 5.916661 TGAAAGAGTGGTCCTGATACTAC 57.083 43.478 0.00 0.00 0.00 2.73
3729 5508 3.370953 GCTCAATCCTACCTCAACCACAT 60.371 47.826 0.00 0.00 0.00 3.21
3735 5514 5.899547 TCAAGATAGCTCAATCCTACCTCAA 59.100 40.000 0.00 0.00 0.00 3.02
3745 5524 8.484575 TCTTTTCTCTGATCAAGATAGCTCAAT 58.515 33.333 0.00 0.00 33.29 2.57
3799 5578 3.324846 AGGTTGTACTGAATGCACTCTGA 59.675 43.478 9.13 0.00 0.00 3.27
3802 5581 3.403038 ACAGGTTGTACTGAATGCACTC 58.597 45.455 0.00 0.00 40.97 3.51
3803 5582 3.492102 ACAGGTTGTACTGAATGCACT 57.508 42.857 0.00 0.00 40.97 4.40
3804 5583 4.994852 TCTAACAGGTTGTACTGAATGCAC 59.005 41.667 0.00 0.00 40.97 4.57
3805 5584 5.221641 ACTCTAACAGGTTGTACTGAATGCA 60.222 40.000 0.00 0.00 40.97 3.96
3806 5585 5.120830 CACTCTAACAGGTTGTACTGAATGC 59.879 44.000 0.00 0.00 40.97 3.56
3807 5586 6.223852 ACACTCTAACAGGTTGTACTGAATG 58.776 40.000 0.00 0.00 40.97 2.67
3808 5587 6.420913 ACACTCTAACAGGTTGTACTGAAT 57.579 37.500 0.00 0.00 40.97 2.57
3809 5588 5.864418 ACACTCTAACAGGTTGTACTGAA 57.136 39.130 0.00 0.00 40.97 3.02
3810 5589 6.492429 ACATACACTCTAACAGGTTGTACTGA 59.508 38.462 0.00 0.00 40.97 3.41
3811 5590 6.688578 ACATACACTCTAACAGGTTGTACTG 58.311 40.000 0.00 0.00 44.03 2.74
3812 5591 6.912951 ACATACACTCTAACAGGTTGTACT 57.087 37.500 0.00 0.00 0.00 2.73
3813 5592 9.649167 AAATACATACACTCTAACAGGTTGTAC 57.351 33.333 0.00 0.00 0.00 2.90
3814 5593 9.865321 GAAATACATACACTCTAACAGGTTGTA 57.135 33.333 0.00 0.00 0.00 2.41
3815 5594 7.822822 GGAAATACATACACTCTAACAGGTTGT 59.177 37.037 0.00 0.00 0.00 3.32
3816 5595 7.280205 GGGAAATACATACACTCTAACAGGTTG 59.720 40.741 0.00 0.00 0.00 3.77
3817 5596 7.182206 AGGGAAATACATACACTCTAACAGGTT 59.818 37.037 0.00 0.00 0.00 3.50
3818 5597 6.672657 AGGGAAATACATACACTCTAACAGGT 59.327 38.462 0.00 0.00 0.00 4.00
3819 5598 6.986817 CAGGGAAATACATACACTCTAACAGG 59.013 42.308 0.00 0.00 0.00 4.00
3843 5622 3.713288 GTGCTCCATACGCTGTATTACA 58.287 45.455 0.00 0.00 0.00 2.41
3846 5625 1.407618 TCGTGCTCCATACGCTGTATT 59.592 47.619 0.00 0.00 41.08 1.89
3847 5626 1.029681 TCGTGCTCCATACGCTGTAT 58.970 50.000 0.00 0.00 41.08 2.29
3868 5650 3.792047 CGCGTGCACTGACCATGG 61.792 66.667 16.19 11.19 0.00 3.66
3919 5701 1.638388 CGTGTGCCACTACATGCAGG 61.638 60.000 0.00 0.00 38.34 4.85
3920 5702 0.670239 TCGTGTGCCACTACATGCAG 60.670 55.000 0.00 0.00 38.34 4.41
3921 5703 0.036483 ATCGTGTGCCACTACATGCA 60.036 50.000 0.00 0.00 37.47 3.96
3922 5704 1.934589 TATCGTGTGCCACTACATGC 58.065 50.000 0.00 0.00 37.47 4.06
3923 5705 3.303329 GCATTATCGTGTGCCACTACATG 60.303 47.826 0.00 0.00 38.60 3.21
3924 5706 2.872245 GCATTATCGTGTGCCACTACAT 59.128 45.455 0.00 0.00 35.35 2.29
3925 5707 2.276201 GCATTATCGTGTGCCACTACA 58.724 47.619 0.00 0.00 35.35 2.74
3926 5708 2.276201 TGCATTATCGTGTGCCACTAC 58.724 47.619 0.00 0.00 40.56 2.73
4070 5890 3.075884 GGCCGTCAGAGGTAGTAGATAG 58.924 54.545 0.00 0.00 0.00 2.08
4071 5891 2.224719 GGGCCGTCAGAGGTAGTAGATA 60.225 54.545 0.00 0.00 0.00 1.98
4072 5892 1.479021 GGGCCGTCAGAGGTAGTAGAT 60.479 57.143 0.00 0.00 0.00 1.98
4073 5893 0.106819 GGGCCGTCAGAGGTAGTAGA 60.107 60.000 0.00 0.00 0.00 2.59
4091 5911 2.436646 AACATCAGAAGCGCCGGG 60.437 61.111 2.29 0.00 0.00 5.73
4093 5913 0.453282 CAACAACATCAGAAGCGCCG 60.453 55.000 2.29 0.00 0.00 6.46
4100 5920 0.605319 GGCGACCCAACAACATCAGA 60.605 55.000 0.00 0.00 0.00 3.27
4102 5922 0.605319 GAGGCGACCCAACAACATCA 60.605 55.000 0.00 0.00 0.00 3.07
4103 5923 1.305930 GGAGGCGACCCAACAACATC 61.306 60.000 0.00 0.00 0.00 3.06
4104 5924 1.303317 GGAGGCGACCCAACAACAT 60.303 57.895 0.00 0.00 0.00 2.71
4105 5925 2.112297 GGAGGCGACCCAACAACA 59.888 61.111 0.00 0.00 0.00 3.33
4108 5928 3.948719 GGTGGAGGCGACCCAACA 61.949 66.667 8.78 0.00 41.00 3.33
4113 5933 4.083862 GAGGTGGTGGAGGCGACC 62.084 72.222 0.00 0.00 37.49 4.79
4115 5935 4.316823 AGGAGGTGGTGGAGGCGA 62.317 66.667 0.00 0.00 0.00 5.54
4118 5938 2.608988 AGCAGGAGGTGGTGGAGG 60.609 66.667 0.00 0.00 34.82 4.30
4157 6097 4.451150 GCCAGCCGTGACGATGGA 62.451 66.667 26.10 0.00 36.24 3.41
4160 6100 3.071206 AGAGCCAGCCGTGACGAT 61.071 61.111 6.54 0.00 0.00 3.73
4161 6101 4.056125 CAGAGCCAGCCGTGACGA 62.056 66.667 6.54 0.00 0.00 4.20
4164 6104 2.031012 CAACAGAGCCAGCCGTGA 59.969 61.111 0.00 0.00 0.00 4.35
4165 6105 3.730761 GCAACAGAGCCAGCCGTG 61.731 66.667 0.00 0.00 0.00 4.94
4166 6106 3.946201 AGCAACAGAGCCAGCCGT 61.946 61.111 0.00 0.00 34.23 5.68
4296 6264 3.414700 GCAGTGTCGAAGTGGCGG 61.415 66.667 0.00 0.00 0.00 6.13
4311 6279 2.112198 GCCGAACATCCCGATTGCA 61.112 57.895 0.00 0.00 0.00 4.08
4314 6282 1.146263 GAGGCCGAACATCCCGATT 59.854 57.895 0.00 0.00 0.00 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.