Multiple sequence alignment - TraesCS7A01G305200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G305200 chr7A 100.000 4683 0 0 1 4683 430239069 430243751 0.000000e+00 8648.0
1 TraesCS7A01G305200 chr7A 83.556 225 32 4 1670 1890 489163240 489163463 6.140000e-49 206.0
2 TraesCS7A01G305200 chr7B 91.961 2973 114 54 909 3814 376430817 376433731 0.000000e+00 4050.0
3 TraesCS7A01G305200 chr7B 90.642 748 53 9 158 892 376429993 376430736 0.000000e+00 977.0
4 TraesCS7A01G305200 chr7B 86.834 319 24 10 4014 4326 376436044 376436350 1.610000e-89 340.0
5 TraesCS7A01G305200 chr7B 78.824 340 63 5 4343 4678 424574465 424574799 2.190000e-53 220.0
6 TraesCS7A01G305200 chr7B 84.000 225 31 4 1670 1890 455272016 455271793 1.320000e-50 211.0
7 TraesCS7A01G305200 chr7B 84.211 190 24 4 4341 4528 74813206 74813391 3.720000e-41 180.0
8 TraesCS7A01G305200 chr7D 92.002 2013 103 26 2359 4326 382256811 382258810 0.000000e+00 2772.0
9 TraesCS7A01G305200 chr7D 90.412 1043 57 23 1352 2362 382255729 382256760 0.000000e+00 1332.0
10 TraesCS7A01G305200 chr7D 91.868 455 9 4 908 1338 382255227 382255677 1.110000e-170 610.0
11 TraesCS7A01G305200 chr7D 79.012 810 110 25 9 791 382254209 382254985 2.520000e-137 499.0
12 TraesCS7A01G305200 chr7D 84.000 225 31 4 1670 1890 438368655 438368878 1.320000e-50 211.0
13 TraesCS7A01G305200 chr7D 78.884 251 38 12 1647 1888 215096309 215096065 6.270000e-34 156.0
14 TraesCS7A01G305200 chr2A 95.627 343 12 1 4341 4683 713017335 713017674 8.860000e-152 547.0
15 TraesCS7A01G305200 chr2A 87.649 251 26 4 1644 1890 708059137 708059386 2.130000e-73 287.0
16 TraesCS7A01G305200 chr6A 95.601 341 12 2 4343 4683 36082944 36082607 1.150000e-150 544.0
17 TraesCS7A01G305200 chr2B 94.203 345 16 3 4339 4683 120569280 120568940 1.490000e-144 523.0
18 TraesCS7A01G305200 chr2B 87.251 251 27 4 1644 1890 681409271 681409520 9.920000e-72 281.0
19 TraesCS7A01G305200 chr2B 82.873 181 26 4 1074 1250 681408801 681408980 1.740000e-34 158.0
20 TraesCS7A01G305200 chr1D 88.304 342 34 4 4343 4683 114135903 114135567 5.640000e-109 405.0
21 TraesCS7A01G305200 chr2D 88.048 251 25 4 1644 1890 568801800 568802049 4.580000e-75 292.0
22 TraesCS7A01G305200 chr2D 80.423 189 25 3 1074 1250 568801320 568801508 2.940000e-27 134.0
23 TraesCS7A01G305200 chr2D 75.221 226 43 13 1671 1891 398087116 398086899 1.390000e-15 95.3
24 TraesCS7A01G305200 chr3A 77.746 346 63 11 4343 4682 85379694 85379357 2.860000e-47 200.0
25 TraesCS7A01G305200 chr6B 98.214 112 2 0 4572 4683 135384686 135384797 3.700000e-46 196.0
26 TraesCS7A01G305200 chr6B 77.011 348 64 13 4343 4683 26406061 26405723 8.000000e-43 185.0
27 TraesCS7A01G305200 chr4D 77.108 166 31 7 1088 1251 46293024 46292864 6.450000e-14 89.8
28 TraesCS7A01G305200 chr4B 77.246 167 29 9 1085 1248 67771414 67771574 6.450000e-14 89.8
29 TraesCS7A01G305200 chr4A 77.108 166 31 7 1085 1248 552698531 552698691 6.450000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G305200 chr7A 430239069 430243751 4682 False 8648.00 8648 100.000000 1 4683 1 chr7A.!!$F1 4682
1 TraesCS7A01G305200 chr7B 376429993 376436350 6357 False 1789.00 4050 89.812333 158 4326 3 chr7B.!!$F3 4168
2 TraesCS7A01G305200 chr7D 382254209 382258810 4601 False 1303.25 2772 88.323500 9 4326 4 chr7D.!!$F2 4317
3 TraesCS7A01G305200 chr2B 681408801 681409520 719 False 219.50 281 85.062000 1074 1890 2 chr2B.!!$F1 816
4 TraesCS7A01G305200 chr2D 568801320 568802049 729 False 213.00 292 84.235500 1074 1890 2 chr2D.!!$F1 816

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
676 703 0.030235 GGTGTTTCTTGCGTGGGTTC 59.970 55.0 0.00 0.00 0.00 3.62 F
1062 1243 0.661552 TAGCAGTGTAGCGATCCGAC 59.338 55.0 0.00 0.00 40.15 4.79 F
1969 2351 0.806492 GCCAGCTCAAGGTACGTAGC 60.806 60.0 16.85 16.85 35.16 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1630 1997 0.035881 CCTCTGCACAAGGAGAAGCA 59.964 55.0 4.62 0.0 41.98 3.91 R
2473 2918 0.527817 GGGCTGACACGAGGAATACG 60.528 60.0 0.00 0.0 0.00 3.06 R
3880 5855 0.512952 GCCAGTCATCGTGTGTTGTC 59.487 55.0 0.00 0.0 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.314534 TTGCATGATTGGCTCACCGG 61.315 55.000 0.00 0.00 39.70 5.28
24 25 0.392461 TGATTGGCTCACCGGTTAGC 60.392 55.000 28.94 28.94 39.70 3.09
26 27 0.037590 ATTGGCTCACCGGTTAGCAA 59.962 50.000 34.96 26.04 40.61 3.91
32 33 0.958382 TCACCGGTTAGCAATGTGGC 60.958 55.000 2.97 0.00 0.00 5.01
34 35 2.414785 CCGGTTAGCAATGTGGCCC 61.415 63.158 0.00 0.00 0.00 5.80
35 36 2.414785 CGGTTAGCAATGTGGCCCC 61.415 63.158 0.00 0.00 0.00 5.80
36 37 1.304879 GGTTAGCAATGTGGCCCCA 60.305 57.895 0.00 0.00 0.00 4.96
39 40 1.554617 GTTAGCAATGTGGCCCCATTT 59.445 47.619 11.12 0.37 32.81 2.32
59 60 3.126001 TGTTGCTACTCCTCTTGGTTG 57.874 47.619 0.00 0.00 34.23 3.77
65 66 1.507140 ACTCCTCTTGGTTGTGTGGA 58.493 50.000 0.00 0.00 34.23 4.02
68 69 2.038952 CTCCTCTTGGTTGTGTGGATGA 59.961 50.000 0.00 0.00 34.23 2.92
72 73 1.800586 CTTGGTTGTGTGGATGACGAG 59.199 52.381 0.00 0.00 0.00 4.18
79 80 0.251877 TGTGGATGACGAGGGGTGTA 60.252 55.000 0.00 0.00 0.00 2.90
81 82 1.068741 GTGGATGACGAGGGGTGTATC 59.931 57.143 0.00 0.00 0.00 2.24
95 96 3.220110 GGTGTATCGACTGGTGATCCTA 58.780 50.000 0.00 0.00 34.23 2.94
97 98 3.253677 GTGTATCGACTGGTGATCCTAGG 59.746 52.174 0.82 0.82 34.23 3.02
104 105 2.316372 ACTGGTGATCCTAGGAAGGTCT 59.684 50.000 17.30 0.00 44.09 3.85
113 114 4.351127 TCCTAGGAAGGTCTTTGTAGTCC 58.649 47.826 9.71 0.00 44.09 3.85
133 134 1.205417 CACAATGGTGGAGCCCAAATC 59.795 52.381 0.00 0.00 41.45 2.17
141 142 3.117888 GGTGGAGCCCAAATCTCAATCTA 60.118 47.826 0.00 0.00 34.18 1.98
149 150 4.594920 CCCAAATCTCAATCTAGAGGCCTA 59.405 45.833 4.42 0.00 36.30 3.93
150 151 5.279910 CCCAAATCTCAATCTAGAGGCCTAG 60.280 48.000 4.42 0.00 42.92 3.02
207 208 0.260816 ATGGCCTAGGTACCTCGACA 59.739 55.000 20.32 18.68 0.00 4.35
242 243 0.897863 ACTGAGCCTCGAAGCAGTCT 60.898 55.000 9.03 0.00 36.98 3.24
261 262 3.225061 TGGTGACGCGTGTGGGTA 61.225 61.111 20.70 0.00 41.99 3.69
264 265 1.080366 GTGACGCGTGTGGGTATCA 60.080 57.895 20.70 1.74 41.99 2.15
267 268 1.762222 GACGCGTGTGGGTATCATGC 61.762 60.000 20.70 0.00 41.99 4.06
275 276 2.324541 GTGGGTATCATGCCTCTCTCT 58.675 52.381 0.00 0.00 0.00 3.10
277 278 2.091111 TGGGTATCATGCCTCTCTCTGA 60.091 50.000 0.00 0.00 0.00 3.27
278 279 2.968574 GGGTATCATGCCTCTCTCTGAA 59.031 50.000 0.00 0.00 0.00 3.02
286 287 0.734253 CCTCTCTCTGAAACGGCGTG 60.734 60.000 15.70 0.00 0.00 5.34
287 288 0.039074 CTCTCTCTGAAACGGCGTGT 60.039 55.000 15.70 8.40 0.00 4.49
288 289 1.199327 CTCTCTCTGAAACGGCGTGTA 59.801 52.381 15.70 1.62 0.00 2.90
290 291 1.719780 CTCTCTGAAACGGCGTGTAAC 59.280 52.381 15.70 6.18 0.00 2.50
346 348 1.880027 AGTCCATCTTGTTGGTTTCGC 59.120 47.619 0.00 0.00 38.01 4.70
352 354 2.343163 CTTGTTGGTTTCGCCGGCAA 62.343 55.000 28.98 16.98 41.21 4.52
365 368 0.239879 CCGGCAACAATGTGTGGTAC 59.760 55.000 0.00 0.00 0.00 3.34
368 371 2.226330 GGCAACAATGTGTGGTACTGA 58.774 47.619 0.00 0.00 0.00 3.41
455 482 0.595095 CTTCAGCTTTGGTGTGAGGC 59.405 55.000 0.00 0.00 32.43 4.70
503 530 1.002366 GTGACTGCATCGTCCACATC 58.998 55.000 3.85 0.00 32.97 3.06
504 531 0.607620 TGACTGCATCGTCCACATCA 59.392 50.000 3.85 0.00 32.97 3.07
511 538 1.402896 ATCGTCCACATCATCGGCCT 61.403 55.000 0.00 0.00 0.00 5.19
543 570 2.236382 GCAAGATCAGCGCTCCTCG 61.236 63.158 7.13 0.00 42.12 4.63
602 629 1.336755 GTTTGGTCGAGGTTGTGCAAT 59.663 47.619 0.00 0.00 0.00 3.56
611 638 1.164411 GGTTGTGCAATGATGTCCGA 58.836 50.000 0.00 0.00 0.00 4.55
647 674 5.389830 CGAGATGCAAATTCGTTCTTCTTCA 60.390 40.000 9.02 0.00 0.00 3.02
656 683 1.541233 CGTTCTTCTTCAGTGGCCACT 60.541 52.381 33.20 33.20 43.61 4.00
669 696 1.008538 GCCACTGGTGTTTCTTGCG 60.009 57.895 0.00 0.00 0.00 4.85
676 703 0.030235 GGTGTTTCTTGCGTGGGTTC 59.970 55.000 0.00 0.00 0.00 3.62
720 747 1.667724 GATGGCAAGTTGATGGAGTCG 59.332 52.381 7.16 0.00 0.00 4.18
754 782 1.288350 TGTGCATTGCTTTGTGTTGC 58.712 45.000 10.49 0.00 0.00 4.17
759 787 2.347846 GCATTGCTTTGTGTTGCTTTCG 60.348 45.455 0.16 0.00 0.00 3.46
769 797 2.845967 GTGTTGCTTTCGTTGTTGTCTG 59.154 45.455 0.00 0.00 0.00 3.51
773 801 4.630894 TGCTTTCGTTGTTGTCTGATTT 57.369 36.364 0.00 0.00 0.00 2.17
939 1096 3.207474 GCAGGTTGCATTGTTCACTAG 57.793 47.619 0.00 0.00 44.26 2.57
940 1097 2.669391 GCAGGTTGCATTGTTCACTAGC 60.669 50.000 0.00 0.00 44.26 3.42
1006 1183 1.325355 TCGTCCCGTCTCAAAACTCT 58.675 50.000 0.00 0.00 0.00 3.24
1062 1243 0.661552 TAGCAGTGTAGCGATCCGAC 59.338 55.000 0.00 0.00 40.15 4.79
1269 1462 2.614779 GTACCCAAGCGTTCCTACTTC 58.385 52.381 0.00 0.00 0.00 3.01
1325 1525 2.669364 TCGTAGCAACCTTTCTTCGTC 58.331 47.619 0.00 0.00 0.00 4.20
1502 1776 1.263356 AACAATCCGGAGACCTTCGA 58.737 50.000 11.34 0.00 0.00 3.71
1569 1931 8.420374 TCATACTTTCTGCTAATTTACCGAAG 57.580 34.615 0.00 0.00 0.00 3.79
1572 1934 5.122396 ACTTTCTGCTAATTTACCGAAGCTG 59.878 40.000 0.00 0.00 35.95 4.24
1577 1939 7.667557 TCTGCTAATTTACCGAAGCTGTATAT 58.332 34.615 0.00 0.00 35.93 0.86
1578 1940 8.148351 TCTGCTAATTTACCGAAGCTGTATATT 58.852 33.333 0.00 0.00 35.93 1.28
1579 1941 8.671384 TGCTAATTTACCGAAGCTGTATATTT 57.329 30.769 0.00 0.00 35.95 1.40
1580 1942 8.556194 TGCTAATTTACCGAAGCTGTATATTTG 58.444 33.333 0.00 0.00 35.95 2.32
1581 1943 8.015658 GCTAATTTACCGAAGCTGTATATTTGG 58.984 37.037 0.00 0.00 36.23 3.28
1582 1944 9.268268 CTAATTTACCGAAGCTGTATATTTGGA 57.732 33.333 0.00 0.00 34.52 3.53
1583 1945 8.691661 AATTTACCGAAGCTGTATATTTGGAT 57.308 30.769 0.00 0.00 34.52 3.41
1630 1997 5.982890 AAATGTTTGGATGGATTCGTCTT 57.017 34.783 0.00 0.00 0.00 3.01
1631 1998 4.970662 ATGTTTGGATGGATTCGTCTTG 57.029 40.909 0.00 0.00 0.00 3.02
1923 2299 2.034687 CCACCACCAGCAGAAGGG 59.965 66.667 0.00 0.00 0.00 3.95
1969 2351 0.806492 GCCAGCTCAAGGTACGTAGC 60.806 60.000 16.85 16.85 35.16 3.58
2108 2494 7.342581 AGAGAAGAGAGTTTGTCTTTCCTTTT 58.657 34.615 0.00 0.00 34.71 2.27
2155 2543 9.926158 TTTCATTACATGTGAAAATTGCATACT 57.074 25.926 9.11 0.00 41.23 2.12
2229 2620 8.652290 AGATAGATATCACTACCTGTTTTTCCC 58.348 37.037 5.32 0.00 35.17 3.97
2415 2860 8.527810 TGAATCTATTACCCGCAAAAGAAAAAT 58.472 29.630 0.00 0.00 0.00 1.82
2473 2918 6.565999 GCGTGTATTTTAGAATGAGGGCATAC 60.566 42.308 0.00 0.00 33.44 2.39
2487 2932 2.391879 GGCATACGTATTCCTCGTGTC 58.608 52.381 15.96 0.00 41.62 3.67
2504 2949 5.302360 TCGTGTCAGCCCATTTATATAACC 58.698 41.667 0.00 0.00 0.00 2.85
2533 2978 2.174107 CGTCGTCGTCGCCTTGTA 59.826 61.111 0.00 0.00 36.96 2.41
2534 2979 1.226211 CGTCGTCGTCGCCTTGTAT 60.226 57.895 0.00 0.00 36.96 2.29
2535 2980 1.461317 CGTCGTCGTCGCCTTGTATG 61.461 60.000 0.00 0.00 36.96 2.39
2536 2981 0.455633 GTCGTCGTCGCCTTGTATGT 60.456 55.000 0.00 0.00 36.96 2.29
2537 2982 0.179181 TCGTCGTCGCCTTGTATGTC 60.179 55.000 0.00 0.00 36.96 3.06
2539 2984 0.179181 GTCGTCGCCTTGTATGTCGA 60.179 55.000 0.00 0.00 0.00 4.20
2543 2991 1.065102 GTCGCCTTGTATGTCGAGCTA 59.935 52.381 0.00 0.00 0.00 3.32
2599 3047 2.357637 GAGTGATCTTCTCTGACTCGGG 59.642 54.545 9.94 0.00 0.00 5.14
2670 3118 1.000843 TCAACTCCACAGTCCATGTCG 59.999 52.381 0.00 0.00 41.41 4.35
2943 3392 5.045578 TCAATGAAGCCTTCTTAGCCTAACT 60.046 40.000 5.96 0.00 31.48 2.24
2945 3394 6.561519 ATGAAGCCTTCTTAGCCTAACTTA 57.438 37.500 5.96 0.00 31.48 2.24
2946 3395 5.731591 TGAAGCCTTCTTAGCCTAACTTAC 58.268 41.667 5.96 0.00 31.48 2.34
2947 3396 5.484290 TGAAGCCTTCTTAGCCTAACTTACT 59.516 40.000 5.96 0.00 31.48 2.24
2948 3397 6.666546 TGAAGCCTTCTTAGCCTAACTTACTA 59.333 38.462 5.96 0.00 31.48 1.82
3034 3491 6.655078 AGATGAACTTGCACTTACCATTTT 57.345 33.333 0.00 0.00 0.00 1.82
3141 3598 1.366319 AGGCCACCATCTGAAGAAGT 58.634 50.000 5.01 0.00 0.00 3.01
3181 3641 0.616395 TGGACCTTCCGACTATGCCA 60.616 55.000 0.00 0.00 40.17 4.92
3283 3743 4.803908 GGCCTGCCAGCACTACCC 62.804 72.222 2.58 0.00 35.81 3.69
3466 3926 5.306678 ACCCCTCTGAATCTTGATATGAGAC 59.693 44.000 0.00 0.00 0.00 3.36
3476 3936 8.604640 AATCTTGATATGAGACTATTGTGCTG 57.395 34.615 0.00 0.00 0.00 4.41
3497 3962 2.494059 CTAGTTGAAGTGTGGTGGTGG 58.506 52.381 0.00 0.00 0.00 4.61
3578 4043 2.498167 GTTGATGCAGTGTCTGTTCCT 58.502 47.619 0.00 0.00 33.43 3.36
3739 4204 6.877322 TGTAACCTCCAGCTGAAAGTAAATAC 59.123 38.462 17.39 8.84 35.30 1.89
3740 4205 5.763876 ACCTCCAGCTGAAAGTAAATACT 57.236 39.130 17.39 0.00 38.39 2.12
3741 4206 6.869206 ACCTCCAGCTGAAAGTAAATACTA 57.131 37.500 17.39 0.00 34.99 1.82
3742 4207 7.439108 ACCTCCAGCTGAAAGTAAATACTAT 57.561 36.000 17.39 0.00 34.99 2.12
3744 4209 7.092846 ACCTCCAGCTGAAAGTAAATACTATGT 60.093 37.037 17.39 0.00 34.99 2.29
3771 4240 7.229506 GGATAACCCCTATTTGTCATTCTGAAG 59.770 40.741 0.00 0.00 0.00 3.02
3789 4258 4.746729 TGAAGCATGGTGTGATAAATTGC 58.253 39.130 0.00 0.00 0.00 3.56
3816 4285 4.694982 TCAGTGCGATAAACATGTTGTGAT 59.305 37.500 12.82 6.23 0.00 3.06
3817 4286 5.872070 TCAGTGCGATAAACATGTTGTGATA 59.128 36.000 12.82 0.61 0.00 2.15
3819 4288 7.020602 CAGTGCGATAAACATGTTGTGATAAA 58.979 34.615 12.82 0.00 0.00 1.40
3820 4289 7.697710 CAGTGCGATAAACATGTTGTGATAAAT 59.302 33.333 12.82 0.00 0.00 1.40
3821 4290 8.243426 AGTGCGATAAACATGTTGTGATAAATT 58.757 29.630 12.82 0.00 0.00 1.82
3822 4291 8.313227 GTGCGATAAACATGTTGTGATAAATTG 58.687 33.333 12.82 3.32 0.00 2.32
3823 4292 7.009083 TGCGATAAACATGTTGTGATAAATTGC 59.991 33.333 12.82 12.05 0.00 3.56
3830 4311 8.565896 ACATGTTGTGATAAATTGCTCTAAGA 57.434 30.769 0.00 0.00 0.00 2.10
3880 5855 7.558604 ACTTGATTCCCCACAATAAATTGATG 58.441 34.615 9.60 4.51 40.14 3.07
3902 5877 1.536766 CAACACACGATGACTGGCAAT 59.463 47.619 0.00 0.00 0.00 3.56
3913 5888 3.146066 TGACTGGCAATTTAAACGCTCT 58.854 40.909 10.37 0.00 0.00 4.09
3965 5940 2.638480 TGCTTGGCTGTTCAACTACT 57.362 45.000 0.00 0.00 0.00 2.57
3966 5941 2.494059 TGCTTGGCTGTTCAACTACTC 58.506 47.619 0.00 0.00 0.00 2.59
3969 5944 3.476552 CTTGGCTGTTCAACTACTCCAA 58.523 45.455 0.00 0.00 33.57 3.53
3970 5945 3.126001 TGGCTGTTCAACTACTCCAAG 57.874 47.619 0.00 0.00 0.00 3.61
4074 6702 7.636359 GCAAAATCTAGTACAGAAAATAGCACG 59.364 37.037 0.00 0.00 36.67 5.34
4106 6734 4.853924 AGACATTTGCTGGTCGAATTTT 57.146 36.364 0.00 0.00 39.01 1.82
4151 6779 1.818642 ACAGCATTCCAGAACTCAGC 58.181 50.000 0.00 0.00 0.00 4.26
4156 6784 2.354503 GCATTCCAGAACTCAGCTCAGA 60.355 50.000 0.00 0.00 0.00 3.27
4210 6838 1.300481 CATGCACTGCTCCTCATGAG 58.700 55.000 16.24 16.24 44.47 2.90
4240 6868 2.171448 AGAGAACACCACAAGCTTCAGT 59.829 45.455 0.00 0.00 0.00 3.41
4241 6869 3.388024 AGAGAACACCACAAGCTTCAGTA 59.612 43.478 0.00 0.00 0.00 2.74
4300 6930 6.246420 ACAAGCAAACACATCTACTGATTC 57.754 37.500 0.00 0.00 0.00 2.52
4319 6949 3.928727 TCACCAGTACTAACAAGTCGG 57.071 47.619 0.00 0.00 0.00 4.79
4333 6963 3.321967 TCGGTGCCGAAACGAAAC 58.678 55.556 11.22 0.00 46.01 2.78
4334 6964 2.127906 CGGTGCCGAAACGAAACG 60.128 61.111 4.35 0.00 42.83 3.60
4335 6965 2.587679 CGGTGCCGAAACGAAACGA 61.588 57.895 4.35 0.00 42.83 3.85
4336 6966 1.203313 GGTGCCGAAACGAAACGAG 59.797 57.895 0.00 0.00 0.00 4.18
4337 6967 1.203313 GTGCCGAAACGAAACGAGG 59.797 57.895 0.00 0.00 0.00 4.63
4338 6968 1.067749 TGCCGAAACGAAACGAGGA 59.932 52.632 0.00 0.00 0.00 3.71
4339 6969 0.942410 TGCCGAAACGAAACGAGGAG 60.942 55.000 0.00 0.00 0.00 3.69
4340 6970 1.623973 GCCGAAACGAAACGAGGAGG 61.624 60.000 0.00 0.00 0.00 4.30
4341 6971 0.038892 CCGAAACGAAACGAGGAGGA 60.039 55.000 0.00 0.00 0.00 3.71
4342 6972 1.337821 CGAAACGAAACGAGGAGGAG 58.662 55.000 0.00 0.00 0.00 3.69
4343 6973 1.711206 GAAACGAAACGAGGAGGAGG 58.289 55.000 0.00 0.00 0.00 4.30
4344 6974 0.320697 AAACGAAACGAGGAGGAGGG 59.679 55.000 0.00 0.00 0.00 4.30
4345 6975 0.830866 AACGAAACGAGGAGGAGGGT 60.831 55.000 0.00 0.00 0.00 4.34
4346 6976 1.249469 ACGAAACGAGGAGGAGGGTC 61.249 60.000 0.00 0.00 0.00 4.46
4347 6977 1.898885 GAAACGAGGAGGAGGGTCC 59.101 63.158 0.00 0.00 36.58 4.46
4348 6978 0.903454 GAAACGAGGAGGAGGGTCCA 60.903 60.000 0.00 0.00 39.61 4.02
4349 6979 1.192803 AAACGAGGAGGAGGGTCCAC 61.193 60.000 0.00 0.00 39.61 4.02
4350 6980 2.760385 CGAGGAGGAGGGTCCACC 60.760 72.222 1.37 1.37 46.19 4.61
4353 6983 3.391382 GGAGGAGGGTCCACCACG 61.391 72.222 6.27 0.00 45.31 4.94
4354 6984 2.603776 GAGGAGGGTCCACCACGT 60.604 66.667 6.27 0.00 43.89 4.49
4355 6985 2.603776 AGGAGGGTCCACCACGTC 60.604 66.667 6.27 0.00 43.89 4.34
4356 6986 2.920912 GGAGGGTCCACCACGTCA 60.921 66.667 0.00 0.00 43.89 4.35
4357 6987 2.657237 GAGGGTCCACCACGTCAG 59.343 66.667 0.00 0.00 43.89 3.51
4358 6988 2.923035 AGGGTCCACCACGTCAGG 60.923 66.667 0.00 0.00 43.89 3.86
4359 6989 2.920912 GGGTCCACCACGTCAGGA 60.921 66.667 0.00 0.00 39.85 3.86
4360 6990 2.513259 GGGTCCACCACGTCAGGAA 61.513 63.158 0.00 0.00 39.85 3.36
4361 6991 1.677552 GGTCCACCACGTCAGGAAT 59.322 57.895 0.00 0.00 35.64 3.01
4362 6992 0.899720 GGTCCACCACGTCAGGAATA 59.100 55.000 0.00 0.00 35.64 1.75
4363 6993 1.405121 GGTCCACCACGTCAGGAATAC 60.405 57.143 0.00 0.00 35.64 1.89
4364 6994 0.899720 TCCACCACGTCAGGAATACC 59.100 55.000 0.00 0.00 0.00 2.73
4366 6996 2.104967 CCACCACGTCAGGAATACCTA 58.895 52.381 0.00 0.00 45.94 3.08
4367 6997 2.498481 CCACCACGTCAGGAATACCTAA 59.502 50.000 0.00 0.00 45.94 2.69
4368 6998 3.430374 CCACCACGTCAGGAATACCTAAG 60.430 52.174 0.00 0.00 45.94 2.18
4369 6999 2.764572 ACCACGTCAGGAATACCTAAGG 59.235 50.000 0.00 0.00 45.94 2.69
4370 7000 2.102588 CCACGTCAGGAATACCTAAGGG 59.897 54.545 0.00 0.00 45.94 3.95
4371 7001 1.761198 ACGTCAGGAATACCTAAGGGC 59.239 52.381 0.00 0.00 45.94 5.19
4372 7002 1.269621 CGTCAGGAATACCTAAGGGCG 60.270 57.143 0.00 0.00 45.94 6.13
4373 7003 2.037144 GTCAGGAATACCTAAGGGCGA 58.963 52.381 0.00 0.00 45.94 5.54
4374 7004 2.037144 TCAGGAATACCTAAGGGCGAC 58.963 52.381 0.00 0.00 45.94 5.19
4375 7005 1.038280 AGGAATACCTAAGGGCGACG 58.962 55.000 0.00 0.00 45.83 5.12
4376 7006 0.033090 GGAATACCTAAGGGCGACGG 59.967 60.000 0.00 0.00 35.63 4.79
4377 7007 0.033090 GAATACCTAAGGGCGACGGG 59.967 60.000 0.00 0.00 35.63 5.28
4378 7008 1.405272 AATACCTAAGGGCGACGGGG 61.405 60.000 0.00 0.00 35.63 5.73
4379 7009 2.302517 ATACCTAAGGGCGACGGGGA 62.303 60.000 0.00 0.00 35.63 4.81
4380 7010 2.512986 TACCTAAGGGCGACGGGGAA 62.513 60.000 0.00 0.00 35.63 3.97
4381 7011 2.499685 CTAAGGGCGACGGGGAAG 59.500 66.667 0.00 0.00 0.00 3.46
4382 7012 3.078836 TAAGGGCGACGGGGAAGG 61.079 66.667 0.00 0.00 0.00 3.46
4392 7022 4.951963 GGGGAAGGCGATCGCGAG 62.952 72.222 31.76 2.31 43.06 5.03
4393 7023 4.951963 GGGAAGGCGATCGCGAGG 62.952 72.222 31.76 10.48 43.06 4.63
4405 7035 3.341835 GCGAGGCGATTGCTAGGC 61.342 66.667 4.59 2.01 42.25 3.93
4412 7042 4.918201 GATTGCTAGGCCGCCGCT 62.918 66.667 3.05 0.00 34.44 5.52
4413 7043 3.515316 GATTGCTAGGCCGCCGCTA 62.515 63.158 3.05 0.00 34.44 4.26
4414 7044 3.521529 ATTGCTAGGCCGCCGCTAG 62.522 63.158 3.05 2.43 34.44 3.42
4419 7049 3.736996 TAGGCCGCCGCTAGGGTTA 62.737 63.158 3.05 0.00 38.44 2.85
4420 7050 4.603946 GGCCGCCGCTAGGGTTAG 62.604 72.222 6.02 0.00 38.44 2.34
4421 7051 4.603946 GCCGCCGCTAGGGTTAGG 62.604 72.222 6.02 7.01 38.44 2.69
4422 7052 3.152400 CCGCCGCTAGGGTTAGGT 61.152 66.667 6.02 0.00 38.44 3.08
4423 7053 2.728435 CCGCCGCTAGGGTTAGGTT 61.728 63.158 6.02 0.00 38.44 3.50
4424 7054 1.219935 CGCCGCTAGGGTTAGGTTT 59.780 57.895 6.02 0.00 38.44 3.27
4425 7055 0.392060 CGCCGCTAGGGTTAGGTTTT 60.392 55.000 6.02 0.00 38.44 2.43
4426 7056 1.830279 GCCGCTAGGGTTAGGTTTTT 58.170 50.000 6.02 0.00 38.44 1.94
4427 7057 1.741706 GCCGCTAGGGTTAGGTTTTTC 59.258 52.381 6.02 0.00 38.44 2.29
4428 7058 2.362736 CCGCTAGGGTTAGGTTTTTCC 58.637 52.381 6.02 0.00 0.00 3.13
4429 7059 2.004733 CGCTAGGGTTAGGTTTTTCCG 58.995 52.381 0.00 0.00 41.99 4.30
4430 7060 1.741706 GCTAGGGTTAGGTTTTTCCGC 59.258 52.381 0.00 0.00 41.99 5.54
4431 7061 2.876892 GCTAGGGTTAGGTTTTTCCGCA 60.877 50.000 0.00 0.00 41.99 5.69
4432 7062 1.612676 AGGGTTAGGTTTTTCCGCAC 58.387 50.000 0.00 0.00 41.99 5.34
4433 7063 0.239082 GGGTTAGGTTTTTCCGCACG 59.761 55.000 0.00 0.00 41.99 5.34
4434 7064 0.239082 GGTTAGGTTTTTCCGCACGG 59.761 55.000 1.73 1.73 41.99 4.94
4435 7065 0.239082 GTTAGGTTTTTCCGCACGGG 59.761 55.000 9.58 0.00 41.99 5.28
4436 7066 0.890090 TTAGGTTTTTCCGCACGGGG 60.890 55.000 9.58 0.00 41.99 5.73
4437 7067 2.751357 TAGGTTTTTCCGCACGGGGG 62.751 60.000 9.58 0.00 41.99 5.40
4438 7068 2.908428 GTTTTTCCGCACGGGGGT 60.908 61.111 9.58 0.00 36.95 4.95
4439 7069 2.907917 TTTTTCCGCACGGGGGTG 60.908 61.111 9.58 0.00 36.95 4.61
4440 7070 3.417167 TTTTTCCGCACGGGGGTGA 62.417 57.895 9.58 0.00 36.95 4.02
4441 7071 3.835790 TTTTCCGCACGGGGGTGAG 62.836 63.158 9.58 0.00 36.95 3.51
4444 7074 4.096003 CCGCACGGGGGTGAGATT 62.096 66.667 0.00 0.00 0.00 2.40
4445 7075 2.819595 CGCACGGGGGTGAGATTG 60.820 66.667 0.00 0.00 0.00 2.67
4446 7076 2.438434 GCACGGGGGTGAGATTGG 60.438 66.667 0.00 0.00 0.00 3.16
4447 7077 2.966732 GCACGGGGGTGAGATTGGA 61.967 63.158 0.00 0.00 0.00 3.53
4448 7078 1.915228 CACGGGGGTGAGATTGGAT 59.085 57.895 0.00 0.00 0.00 3.41
4449 7079 0.179045 CACGGGGGTGAGATTGGATC 60.179 60.000 0.00 0.00 0.00 3.36
4450 7080 0.326618 ACGGGGGTGAGATTGGATCT 60.327 55.000 0.00 0.00 43.70 2.75
4459 7089 2.166907 AGATTGGATCTCCGGTGACT 57.833 50.000 8.68 0.00 39.43 3.41
4460 7090 1.759445 AGATTGGATCTCCGGTGACTG 59.241 52.381 8.68 0.00 39.43 3.51
4461 7091 0.179000 ATTGGATCTCCGGTGACTGC 59.821 55.000 8.68 4.67 39.43 4.40
4462 7092 0.904865 TTGGATCTCCGGTGACTGCT 60.905 55.000 8.68 0.00 39.43 4.24
4463 7093 1.323271 TGGATCTCCGGTGACTGCTC 61.323 60.000 8.68 2.30 39.43 4.26
4464 7094 1.064946 GATCTCCGGTGACTGCTCG 59.935 63.158 8.68 0.00 0.00 5.03
4465 7095 1.377366 GATCTCCGGTGACTGCTCGA 61.377 60.000 8.68 0.00 0.00 4.04
4466 7096 0.965866 ATCTCCGGTGACTGCTCGAA 60.966 55.000 8.68 0.00 0.00 3.71
4467 7097 1.444553 CTCCGGTGACTGCTCGAAC 60.445 63.158 0.00 0.00 0.00 3.95
4468 7098 2.805353 CCGGTGACTGCTCGAACG 60.805 66.667 0.00 0.00 0.00 3.95
4469 7099 2.805353 CGGTGACTGCTCGAACGG 60.805 66.667 0.00 0.00 0.00 4.44
4470 7100 3.112709 GGTGACTGCTCGAACGGC 61.113 66.667 0.00 0.00 0.00 5.68
4471 7101 3.470567 GTGACTGCTCGAACGGCG 61.471 66.667 4.80 4.80 42.69 6.46
4473 7103 3.173240 GACTGCTCGAACGGCGAC 61.173 66.667 16.62 6.32 45.59 5.19
4494 7124 2.746277 GCTGTTCCCGCGGTTGAT 60.746 61.111 26.12 0.00 0.00 2.57
4495 7125 2.750888 GCTGTTCCCGCGGTTGATC 61.751 63.158 26.12 14.31 0.00 2.92
4496 7126 2.433491 TGTTCCCGCGGTTGATCG 60.433 61.111 26.12 7.54 0.00 3.69
4497 7127 3.192922 GTTCCCGCGGTTGATCGG 61.193 66.667 26.12 6.69 44.89 4.18
4503 7133 3.564027 GCGGTTGATCGGCGAAGG 61.564 66.667 15.93 0.58 33.07 3.46
4504 7134 2.125673 CGGTTGATCGGCGAAGGT 60.126 61.111 15.93 0.00 0.00 3.50
4505 7135 1.740296 CGGTTGATCGGCGAAGGTT 60.740 57.895 15.93 0.00 0.00 3.50
4506 7136 1.296056 CGGTTGATCGGCGAAGGTTT 61.296 55.000 15.93 0.00 0.00 3.27
4507 7137 0.879090 GGTTGATCGGCGAAGGTTTT 59.121 50.000 15.93 0.00 0.00 2.43
4508 7138 1.135774 GGTTGATCGGCGAAGGTTTTC 60.136 52.381 15.93 6.30 0.00 2.29
4509 7139 1.804748 GTTGATCGGCGAAGGTTTTCT 59.195 47.619 15.93 0.00 0.00 2.52
4510 7140 2.178912 TGATCGGCGAAGGTTTTCTT 57.821 45.000 15.93 0.00 38.65 2.52
4511 7141 2.073816 TGATCGGCGAAGGTTTTCTTC 58.926 47.619 15.93 3.78 46.33 2.87
4519 7149 1.239347 AAGGTTTTCTTCAGGAGCGC 58.761 50.000 0.00 0.00 0.00 5.92
4520 7150 0.398318 AGGTTTTCTTCAGGAGCGCT 59.602 50.000 11.27 11.27 0.00 5.92
4521 7151 0.799393 GGTTTTCTTCAGGAGCGCTC 59.201 55.000 29.38 29.38 0.00 5.03
4522 7152 0.440371 GTTTTCTTCAGGAGCGCTCG 59.560 55.000 29.81 17.93 0.00 5.03
4523 7153 0.033504 TTTTCTTCAGGAGCGCTCGT 59.966 50.000 29.81 27.91 0.00 4.18
4524 7154 0.667487 TTTCTTCAGGAGCGCTCGTG 60.667 55.000 40.51 40.51 44.29 4.35
4525 7155 1.806461 TTCTTCAGGAGCGCTCGTGT 61.806 55.000 42.15 24.87 43.62 4.49
4526 7156 2.049156 TTCAGGAGCGCTCGTGTG 60.049 61.111 42.15 31.98 43.62 3.82
4527 7157 3.573772 TTCAGGAGCGCTCGTGTGG 62.574 63.158 42.15 27.28 43.62 4.17
4528 7158 4.363990 CAGGAGCGCTCGTGTGGT 62.364 66.667 38.76 16.15 39.75 4.16
4529 7159 4.363990 AGGAGCGCTCGTGTGGTG 62.364 66.667 30.10 0.00 34.29 4.17
4530 7160 4.664677 GGAGCGCTCGTGTGGTGT 62.665 66.667 29.81 0.00 34.29 4.16
4531 7161 3.406361 GAGCGCTCGTGTGGTGTG 61.406 66.667 23.61 0.00 34.29 3.82
4532 7162 4.221422 AGCGCTCGTGTGGTGTGT 62.221 61.111 2.64 0.00 32.76 3.72
4533 7163 3.702555 GCGCTCGTGTGGTGTGTC 61.703 66.667 0.00 0.00 0.00 3.67
4534 7164 3.036084 CGCTCGTGTGGTGTGTCC 61.036 66.667 0.00 0.00 0.00 4.02
4535 7165 2.108157 GCTCGTGTGGTGTGTCCA 59.892 61.111 0.00 0.00 45.01 4.02
4545 7175 4.321966 TGTGTCCATGGCGGCGAA 62.322 61.111 12.98 0.00 33.14 4.70
4546 7176 3.799755 GTGTCCATGGCGGCGAAC 61.800 66.667 12.98 2.36 33.14 3.95
4557 7187 4.719997 GGCGAACGAGATCAGAGG 57.280 61.111 0.00 0.00 0.00 3.69
4558 7188 1.066587 GGCGAACGAGATCAGAGGG 59.933 63.158 0.00 0.00 0.00 4.30
4559 7189 1.066587 GCGAACGAGATCAGAGGGG 59.933 63.158 0.00 0.00 0.00 4.79
4560 7190 1.066587 CGAACGAGATCAGAGGGGC 59.933 63.158 0.00 0.00 0.00 5.80
4561 7191 1.066587 GAACGAGATCAGAGGGGCG 59.933 63.158 0.00 0.00 0.00 6.13
4562 7192 1.379977 AACGAGATCAGAGGGGCGA 60.380 57.895 0.00 0.00 0.00 5.54
4563 7193 1.668101 AACGAGATCAGAGGGGCGAC 61.668 60.000 0.00 0.00 0.00 5.19
4602 7232 2.895372 CCCCCGCAAGCATACGAC 60.895 66.667 0.00 0.00 0.00 4.34
4603 7233 3.261951 CCCCGCAAGCATACGACG 61.262 66.667 0.00 0.00 0.00 5.12
4604 7234 2.202690 CCCGCAAGCATACGACGA 60.203 61.111 0.00 0.00 0.00 4.20
4605 7235 2.514013 CCCGCAAGCATACGACGAC 61.514 63.158 0.00 0.00 0.00 4.34
4606 7236 2.608204 CGCAAGCATACGACGACG 59.392 61.111 5.58 5.58 45.75 5.12
4607 7237 2.845739 CGCAAGCATACGACGACGG 61.846 63.158 12.58 0.00 44.46 4.79
4608 7238 2.995482 CAAGCATACGACGACGGC 59.005 61.111 12.58 5.59 44.46 5.68
4609 7239 2.578713 AAGCATACGACGACGGCG 60.579 61.111 23.84 23.84 44.46 6.46
4636 7266 4.802051 GCGGCAGCAGGGGATTCA 62.802 66.667 3.18 0.00 44.35 2.57
4637 7267 2.045045 CGGCAGCAGGGGATTCAA 60.045 61.111 0.00 0.00 0.00 2.69
4638 7268 2.409870 CGGCAGCAGGGGATTCAAC 61.410 63.158 0.00 0.00 0.00 3.18
4639 7269 2.409870 GGCAGCAGGGGATTCAACG 61.410 63.158 0.00 0.00 0.00 4.10
4640 7270 2.409870 GCAGCAGGGGATTCAACGG 61.410 63.158 0.00 0.00 0.00 4.44
4641 7271 2.044946 AGCAGGGGATTCAACGGC 60.045 61.111 0.00 0.00 0.00 5.68
4642 7272 3.140814 GCAGGGGATTCAACGGCC 61.141 66.667 0.00 0.00 0.00 6.13
4643 7273 2.440247 CAGGGGATTCAACGGCCC 60.440 66.667 0.00 0.00 41.28 5.80
4644 7274 4.109675 AGGGGATTCAACGGCCCG 62.110 66.667 0.00 0.00 42.99 6.13
4648 7278 4.419921 GATTCAACGGCCCGGGGT 62.420 66.667 25.28 10.08 0.00 4.95
4649 7279 4.733542 ATTCAACGGCCCGGGGTG 62.734 66.667 25.28 5.03 0.00 4.61
4674 7304 4.424711 GTCCCCGGCTGATGGCAA 62.425 66.667 0.00 0.00 44.01 4.52
4675 7305 4.113815 TCCCCGGCTGATGGCAAG 62.114 66.667 0.00 0.00 44.01 4.01
4676 7306 4.113815 CCCCGGCTGATGGCAAGA 62.114 66.667 0.00 0.00 44.01 3.02
4677 7307 2.825836 CCCGGCTGATGGCAAGAC 60.826 66.667 0.00 0.00 44.01 3.01
4678 7308 2.270205 CCGGCTGATGGCAAGACT 59.730 61.111 0.00 0.00 44.01 3.24
4679 7309 1.522092 CCGGCTGATGGCAAGACTA 59.478 57.895 0.00 0.00 44.01 2.59
4680 7310 0.811616 CCGGCTGATGGCAAGACTAC 60.812 60.000 0.00 0.00 44.01 2.73
4681 7311 1.148157 CGGCTGATGGCAAGACTACG 61.148 60.000 0.00 0.00 44.01 3.51
4682 7312 0.811616 GGCTGATGGCAAGACTACGG 60.812 60.000 0.00 0.00 44.01 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.314534 CCGGTGAGCCAATCATGCAA 61.315 55.000 0.00 0.00 40.92 4.08
1 2 1.750018 CCGGTGAGCCAATCATGCA 60.750 57.895 0.00 0.00 40.92 3.96
2 3 1.315257 AACCGGTGAGCCAATCATGC 61.315 55.000 8.52 0.00 40.92 4.06
3 4 1.942657 CTAACCGGTGAGCCAATCATG 59.057 52.381 8.52 0.00 40.92 3.07
4 5 1.747206 GCTAACCGGTGAGCCAATCAT 60.747 52.381 31.18 2.70 40.92 2.45
5 6 0.392461 GCTAACCGGTGAGCCAATCA 60.392 55.000 31.18 0.00 34.79 2.57
6 7 0.392461 TGCTAACCGGTGAGCCAATC 60.392 55.000 36.22 13.43 37.94 2.67
7 8 0.037590 TTGCTAACCGGTGAGCCAAT 59.962 50.000 36.22 9.80 37.94 3.16
19 20 1.194218 AATGGGGCCACATTGCTAAC 58.806 50.000 32.47 0.00 39.47 2.34
24 25 1.810959 CAACAAATGGGGCCACATTG 58.189 50.000 33.54 26.40 40.71 2.82
26 27 0.837260 AGCAACAAATGGGGCCACAT 60.837 50.000 17.02 17.02 0.00 3.21
32 33 2.025887 AGAGGAGTAGCAACAAATGGGG 60.026 50.000 0.00 0.00 0.00 4.96
34 35 3.441572 CCAAGAGGAGTAGCAACAAATGG 59.558 47.826 0.00 0.00 36.89 3.16
35 36 4.074970 ACCAAGAGGAGTAGCAACAAATG 58.925 43.478 0.00 0.00 38.69 2.32
36 37 4.373156 ACCAAGAGGAGTAGCAACAAAT 57.627 40.909 0.00 0.00 38.69 2.32
39 40 2.438021 ACAACCAAGAGGAGTAGCAACA 59.562 45.455 0.00 0.00 38.69 3.33
59 60 1.079127 CACCCCTCGTCATCCACAC 60.079 63.158 0.00 0.00 0.00 3.82
65 66 1.030457 GTCGATACACCCCTCGTCAT 58.970 55.000 0.00 0.00 36.33 3.06
68 69 1.035932 CCAGTCGATACACCCCTCGT 61.036 60.000 0.00 0.00 36.33 4.18
72 73 1.068741 GATCACCAGTCGATACACCCC 59.931 57.143 0.00 0.00 0.00 4.95
79 80 3.226777 CTTCCTAGGATCACCAGTCGAT 58.773 50.000 13.57 0.00 38.94 3.59
81 82 1.683917 CCTTCCTAGGATCACCAGTCG 59.316 57.143 13.57 0.00 45.05 4.18
95 96 3.314693 TGTGGACTACAAAGACCTTCCT 58.685 45.455 0.00 0.00 38.26 3.36
113 114 1.205417 GATTTGGGCTCCACCATTGTG 59.795 52.381 0.00 0.00 40.91 3.33
141 142 1.501170 TGCCACTAGATCTAGGCCTCT 59.499 52.381 29.03 2.12 46.45 3.69
149 150 2.216148 GCCCACTGCCACTAGATCT 58.784 57.895 0.00 0.00 0.00 2.75
150 151 4.865865 GCCCACTGCCACTAGATC 57.134 61.111 0.00 0.00 0.00 2.75
207 208 0.031314 CAGTATCTCGCTCGTGCCAT 59.969 55.000 3.52 0.00 35.36 4.40
242 243 4.901123 CCCACACGCGTCACCACA 62.901 66.667 9.86 0.00 0.00 4.17
261 262 2.158986 CCGTTTCAGAGAGAGGCATGAT 60.159 50.000 0.00 0.00 0.00 2.45
264 265 0.107945 GCCGTTTCAGAGAGAGGCAT 60.108 55.000 0.00 0.00 43.65 4.40
267 268 0.734253 CACGCCGTTTCAGAGAGAGG 60.734 60.000 0.00 0.00 0.00 3.69
275 276 1.597578 GGGGTTACACGCCGTTTCA 60.598 57.895 0.00 0.00 41.48 2.69
346 348 0.239879 GTACCACACATTGTTGCCGG 59.760 55.000 0.00 0.00 0.00 6.13
352 354 3.118038 AGGTTGTCAGTACCACACATTGT 60.118 43.478 0.00 0.00 38.16 2.71
365 368 0.250901 CCACCCCAAGAGGTTGTCAG 60.251 60.000 0.00 0.00 38.39 3.51
368 371 1.075536 GATTCCACCCCAAGAGGTTGT 59.924 52.381 0.00 0.00 38.39 3.32
385 388 6.637657 CCTAAAGGTACTAAACTCCACGATT 58.362 40.000 0.00 0.00 38.49 3.34
440 467 0.250901 AATCGCCTCACACCAAAGCT 60.251 50.000 0.00 0.00 0.00 3.74
455 482 4.138487 AGGTAGGAGGCAAACTAAATCG 57.862 45.455 0.00 0.00 0.00 3.34
503 530 0.813184 ACAATCAGCAAAGGCCGATG 59.187 50.000 0.00 0.94 37.24 3.84
504 531 2.292267 CTACAATCAGCAAAGGCCGAT 58.708 47.619 0.00 0.00 38.80 4.18
511 538 4.334552 TGATCTTGCCTACAATCAGCAAA 58.665 39.130 0.00 0.00 45.20 3.68
543 570 0.676151 CTGCCCTCTTGCTCTGGTTC 60.676 60.000 0.00 0.00 0.00 3.62
602 629 3.678072 CGTTAAGAAAGCTTCGGACATCA 59.322 43.478 0.00 0.00 35.56 3.07
611 638 5.689383 TTTGCATCTCGTTAAGAAAGCTT 57.311 34.783 0.00 0.00 38.93 3.74
647 674 0.258774 AAGAAACACCAGTGGCCACT 59.741 50.000 33.20 33.20 43.61 4.00
656 683 0.681564 AACCCACGCAAGAAACACCA 60.682 50.000 0.00 0.00 43.62 4.17
669 696 2.161609 CACAAAGATTAGCCGAACCCAC 59.838 50.000 0.00 0.00 0.00 4.61
676 703 2.540361 GCATGAGCACAAAGATTAGCCG 60.540 50.000 0.00 0.00 41.58 5.52
908 1034 5.421056 ACAATGCAACCTGCTACTACTACTA 59.579 40.000 0.00 0.00 45.31 1.82
909 1035 4.223032 ACAATGCAACCTGCTACTACTACT 59.777 41.667 0.00 0.00 45.31 2.57
910 1036 4.504858 ACAATGCAACCTGCTACTACTAC 58.495 43.478 0.00 0.00 45.31 2.73
938 1095 0.946221 GTGCACGCTAGTCAACTGCT 60.946 55.000 0.00 0.00 0.00 4.24
939 1096 0.946221 AGTGCACGCTAGTCAACTGC 60.946 55.000 12.01 0.00 0.00 4.40
940 1097 2.347697 TAGTGCACGCTAGTCAACTG 57.652 50.000 12.01 0.00 0.00 3.16
1006 1183 0.856982 GAGAGATGGAGGGAGGGAGA 59.143 60.000 0.00 0.00 0.00 3.71
1062 1243 3.860378 GCCAATAGAGCTCATCTTCTCGG 60.860 52.174 17.77 6.12 39.64 4.63
1258 1451 1.468736 GGCACGTAGGAAGTAGGAACG 60.469 57.143 0.00 0.00 39.37 3.95
1269 1462 2.550606 GAGAGATGAGTAGGCACGTAGG 59.449 54.545 0.00 0.00 0.00 3.18
1411 1653 6.784473 ACCTTCCTTTCCTTGAAGAAATCATT 59.216 34.615 0.00 0.00 40.30 2.57
1565 1927 6.912591 GTCCAAAATCCAAATATACAGCTTCG 59.087 38.462 0.00 0.00 0.00 3.79
1569 1931 7.333528 TCTGTCCAAAATCCAAATATACAGC 57.666 36.000 0.00 0.00 33.54 4.40
1572 1934 8.695456 ACCAATCTGTCCAAAATCCAAATATAC 58.305 33.333 0.00 0.00 0.00 1.47
1577 1939 5.609423 CAACCAATCTGTCCAAAATCCAAA 58.391 37.500 0.00 0.00 0.00 3.28
1578 1940 4.502950 GCAACCAATCTGTCCAAAATCCAA 60.503 41.667 0.00 0.00 0.00 3.53
1579 1941 3.006752 GCAACCAATCTGTCCAAAATCCA 59.993 43.478 0.00 0.00 0.00 3.41
1580 1942 3.006752 TGCAACCAATCTGTCCAAAATCC 59.993 43.478 0.00 0.00 0.00 3.01
1581 1943 4.255833 TGCAACCAATCTGTCCAAAATC 57.744 40.909 0.00 0.00 0.00 2.17
1582 1944 4.571919 CATGCAACCAATCTGTCCAAAAT 58.428 39.130 0.00 0.00 0.00 1.82
1583 1945 3.803021 GCATGCAACCAATCTGTCCAAAA 60.803 43.478 14.21 0.00 0.00 2.44
1630 1997 0.035881 CCTCTGCACAAGGAGAAGCA 59.964 55.000 4.62 0.00 41.98 3.91
1631 1998 1.304509 GCCTCTGCACAAGGAGAAGC 61.305 60.000 13.50 1.30 41.98 3.86
1855 2231 1.302511 GTGCATGACCCACTCCGTT 60.303 57.895 0.00 0.00 0.00 4.44
1969 2351 7.766738 AGAGAAGAAGCAGATATGCATATGATG 59.233 37.037 23.76 20.41 37.25 3.07
2007 2391 1.535462 CGAACCAGATGAACCCAACAC 59.465 52.381 0.00 0.00 0.00 3.32
2068 2452 4.792068 TCTTCTCTCTCTCCTCCTCAATC 58.208 47.826 0.00 0.00 0.00 2.67
2108 2494 8.630278 TGAAATAACGAACCGAAAATGAAAAA 57.370 26.923 0.00 0.00 0.00 1.94
2375 2820 6.414408 AATAGATTCAGCTTTGACTGTTCG 57.586 37.500 0.00 0.00 38.84 3.95
2415 2860 9.142515 CAATAGATGCAGCTTTGATTGTTTTTA 57.857 29.630 11.02 0.00 0.00 1.52
2473 2918 0.527817 GGGCTGACACGAGGAATACG 60.528 60.000 0.00 0.00 0.00 3.06
2487 2932 5.937540 TGATGACGGTTATATAAATGGGCTG 59.062 40.000 0.00 0.00 0.00 4.85
2504 2949 1.577362 CGACGACGCGTATGATGACG 61.577 60.000 13.97 12.71 41.37 4.35
2527 2972 5.174035 CGAAATTCTAGCTCGACATACAAGG 59.826 44.000 0.00 0.00 34.52 3.61
2529 2974 5.647589 ACGAAATTCTAGCTCGACATACAA 58.352 37.500 3.62 0.00 36.45 2.41
2531 2976 7.076362 TCATACGAAATTCTAGCTCGACATAC 58.924 38.462 3.62 0.00 36.45 2.39
2532 2977 7.198306 TCATACGAAATTCTAGCTCGACATA 57.802 36.000 3.62 0.00 36.45 2.29
2533 2978 6.073327 TCATACGAAATTCTAGCTCGACAT 57.927 37.500 3.62 0.00 36.45 3.06
2534 2979 5.494632 TCATACGAAATTCTAGCTCGACA 57.505 39.130 3.62 0.00 36.45 4.35
2535 2980 6.375377 AGATCATACGAAATTCTAGCTCGAC 58.625 40.000 3.62 0.00 36.45 4.20
2536 2981 6.428465 AGAGATCATACGAAATTCTAGCTCGA 59.572 38.462 3.62 0.00 36.45 4.04
2537 2982 6.607689 AGAGATCATACGAAATTCTAGCTCG 58.392 40.000 0.00 0.00 38.53 5.03
2539 2984 8.511321 CAGTAGAGATCATACGAAATTCTAGCT 58.489 37.037 0.00 0.00 0.00 3.32
2543 2991 9.522804 GAAACAGTAGAGATCATACGAAATTCT 57.477 33.333 0.00 0.00 0.00 2.40
2599 3047 5.296035 AGGCTGTACAATTAATTAGAACGGC 59.704 40.000 21.24 21.24 0.00 5.68
2670 3118 2.744202 ACACTGGAACGATCATTTCAGC 59.256 45.455 9.75 0.00 0.00 4.26
2948 3397 9.593134 GAACTGTCAATCTCATATGAAGTACTT 57.407 33.333 8.13 8.13 0.00 2.24
3004 3457 8.700973 TGGTAAGTGCAAGTTCATCTATGTATA 58.299 33.333 0.00 0.00 0.00 1.47
3012 3465 7.328493 GGTTAAAATGGTAAGTGCAAGTTCATC 59.672 37.037 0.00 0.00 0.00 2.92
3066 3523 0.976641 TAGCACCCAGTCTTCCTGTG 59.023 55.000 0.00 0.00 39.74 3.66
3154 3611 2.415608 CGGAAGGTCCAGCTCGCTA 61.416 63.158 0.00 0.00 35.91 4.26
3283 3743 0.831288 AGCTCATCGATCCCCTGAGG 60.831 60.000 13.37 0.00 37.47 3.86
3353 3813 3.758755 ACTTGACATGTTGCTCAGAGA 57.241 42.857 0.00 0.00 0.00 3.10
3466 3926 4.692625 ACACTTCAACTAGCAGCACAATAG 59.307 41.667 0.00 0.00 0.00 1.73
3476 3936 1.873591 CACCACCACACTTCAACTAGC 59.126 52.381 0.00 0.00 0.00 3.42
3545 4010 4.400251 ACTGCATCAACCAATAGTCCAATG 59.600 41.667 0.00 0.00 0.00 2.82
3578 4043 4.042809 ACACACACTTCCATCAAATCCCTA 59.957 41.667 0.00 0.00 0.00 3.53
3739 4204 6.837312 TGACAAATAGGGGTTATCCACATAG 58.163 40.000 0.00 0.00 40.18 2.23
3740 4205 6.833346 TGACAAATAGGGGTTATCCACATA 57.167 37.500 0.00 0.00 40.18 2.29
3741 4206 5.725551 TGACAAATAGGGGTTATCCACAT 57.274 39.130 0.00 0.00 40.18 3.21
3742 4207 5.725551 ATGACAAATAGGGGTTATCCACA 57.274 39.130 0.00 0.00 40.18 4.17
3744 4209 6.159575 TCAGAATGACAAATAGGGGTTATCCA 59.840 38.462 0.00 0.00 42.56 3.41
3771 4240 4.644103 AGAGCAATTTATCACACCATGC 57.356 40.909 0.00 0.00 0.00 4.06
3789 4258 5.106948 ACAACATGTTTATCGCACTGAAGAG 60.107 40.000 8.77 0.00 0.00 2.85
3853 4334 7.610865 TCAATTTATTGTGGGGAATCAAGTTC 58.389 34.615 2.66 0.00 38.84 3.01
3854 4335 7.552050 TCAATTTATTGTGGGGAATCAAGTT 57.448 32.000 2.66 0.00 38.84 2.66
3880 5855 0.512952 GCCAGTCATCGTGTGTTGTC 59.487 55.000 0.00 0.00 0.00 3.18
3913 5888 2.055042 GCCGCTTCCTCTCTCCTGA 61.055 63.158 0.00 0.00 0.00 3.86
3940 5915 2.420628 TGAACAGCCAAGCAAAATCG 57.579 45.000 0.00 0.00 0.00 3.34
3965 5940 6.025749 AGACGATCGATTATAATGCTTGGA 57.974 37.500 24.34 0.00 0.00 3.53
3966 5941 7.515841 GCATAGACGATCGATTATAATGCTTGG 60.516 40.741 24.34 5.75 35.49 3.61
3969 5944 5.980116 GGCATAGACGATCGATTATAATGCT 59.020 40.000 24.34 6.76 37.81 3.79
3970 5945 5.748630 TGGCATAGACGATCGATTATAATGC 59.251 40.000 24.34 22.76 37.16 3.56
4061 6689 8.869897 TCTATAAAAGTCACGTGCTATTTTCTG 58.130 33.333 20.78 14.70 0.00 3.02
4069 6697 6.620733 GCAAATGTCTATAAAAGTCACGTGCT 60.621 38.462 11.67 8.74 35.42 4.40
4074 6702 7.145932 ACCAGCAAATGTCTATAAAAGTCAC 57.854 36.000 0.00 0.00 0.00 3.67
4106 6734 1.133915 GGTTGGTGACCTGAGTTTCCA 60.134 52.381 2.11 0.00 45.55 3.53
4151 6779 1.096386 GCCTGGAGCTGCAATCTGAG 61.096 60.000 9.92 0.00 38.99 3.35
4210 6838 3.531538 TGTGGTGTTCTCTTGTGACTTC 58.468 45.455 0.00 0.00 0.00 3.01
4216 6844 2.717639 AGCTTGTGGTGTTCTCTTGT 57.282 45.000 0.00 0.00 0.00 3.16
4281 6911 4.455533 TGGTGAATCAGTAGATGTGTTTGC 59.544 41.667 0.00 0.00 33.90 3.68
4300 6930 3.314553 CACCGACTTGTTAGTACTGGTG 58.685 50.000 5.39 7.96 41.66 4.17
4319 6949 1.203313 CCTCGTTTCGTTTCGGCAC 59.797 57.895 0.00 0.00 0.00 5.01
4326 6956 0.830866 ACCCTCCTCCTCGTTTCGTT 60.831 55.000 0.00 0.00 0.00 3.85
4327 6957 1.228800 ACCCTCCTCCTCGTTTCGT 60.229 57.895 0.00 0.00 0.00 3.85
4328 6958 1.511768 GACCCTCCTCCTCGTTTCG 59.488 63.158 0.00 0.00 0.00 3.46
4329 6959 0.903454 TGGACCCTCCTCCTCGTTTC 60.903 60.000 0.00 0.00 37.46 2.78
4330 6960 1.157751 TGGACCCTCCTCCTCGTTT 59.842 57.895 0.00 0.00 37.46 3.60
4331 6961 1.609794 GTGGACCCTCCTCCTCGTT 60.610 63.158 0.00 0.00 37.46 3.85
4332 6962 2.037527 GTGGACCCTCCTCCTCGT 59.962 66.667 0.00 0.00 37.46 4.18
4333 6963 2.760385 GGTGGACCCTCCTCCTCG 60.760 72.222 2.63 0.00 44.65 4.63
4337 6967 2.603776 ACGTGGTGGACCCTCCTC 60.604 66.667 8.43 4.34 37.46 3.71
4338 6968 2.603776 GACGTGGTGGACCCTCCT 60.604 66.667 0.00 0.00 37.46 3.69
4339 6969 2.920912 TGACGTGGTGGACCCTCC 60.921 66.667 0.00 0.34 36.96 4.30
4340 6970 2.657237 CTGACGTGGTGGACCCTC 59.343 66.667 0.00 0.00 34.29 4.30
4341 6971 2.923035 CCTGACGTGGTGGACCCT 60.923 66.667 0.00 0.00 34.29 4.34
4342 6972 1.838073 ATTCCTGACGTGGTGGACCC 61.838 60.000 0.00 0.00 34.29 4.46
4343 6973 0.899720 TATTCCTGACGTGGTGGACC 59.100 55.000 0.00 0.00 0.00 4.46
4344 6974 1.405121 GGTATTCCTGACGTGGTGGAC 60.405 57.143 0.00 0.00 0.00 4.02
4345 6975 0.899720 GGTATTCCTGACGTGGTGGA 59.100 55.000 0.00 0.00 0.00 4.02
4346 6976 0.902531 AGGTATTCCTGACGTGGTGG 59.097 55.000 0.00 0.00 43.33 4.61
4347 6977 3.430374 CCTTAGGTATTCCTGACGTGGTG 60.430 52.174 0.22 0.00 44.81 4.17
4348 6978 2.764572 CCTTAGGTATTCCTGACGTGGT 59.235 50.000 0.22 0.00 44.81 4.16
4349 6979 2.102588 CCCTTAGGTATTCCTGACGTGG 59.897 54.545 0.22 0.00 44.81 4.94
4350 6980 2.483188 GCCCTTAGGTATTCCTGACGTG 60.483 54.545 0.22 0.00 44.81 4.49
4351 6981 1.761198 GCCCTTAGGTATTCCTGACGT 59.239 52.381 0.22 0.00 44.81 4.34
4352 6982 1.269621 CGCCCTTAGGTATTCCTGACG 60.270 57.143 0.22 0.00 44.81 4.35
4353 6983 2.037144 TCGCCCTTAGGTATTCCTGAC 58.963 52.381 0.22 0.00 44.81 3.51
4354 6984 2.037144 GTCGCCCTTAGGTATTCCTGA 58.963 52.381 0.22 0.00 44.81 3.86
4355 6985 1.269621 CGTCGCCCTTAGGTATTCCTG 60.270 57.143 0.22 0.00 44.81 3.86
4357 6987 0.033090 CCGTCGCCCTTAGGTATTCC 59.967 60.000 0.00 0.00 34.57 3.01
4358 6988 0.033090 CCCGTCGCCCTTAGGTATTC 59.967 60.000 0.00 0.00 34.57 1.75
4359 6989 1.405272 CCCCGTCGCCCTTAGGTATT 61.405 60.000 0.00 0.00 34.57 1.89
4360 6990 1.835712 CCCCGTCGCCCTTAGGTAT 60.836 63.158 0.00 0.00 34.57 2.73
4361 6991 2.442643 CCCCGTCGCCCTTAGGTA 60.443 66.667 0.00 0.00 34.57 3.08
4362 6992 3.910784 TTCCCCGTCGCCCTTAGGT 62.911 63.158 0.00 0.00 34.57 3.08
4363 6993 3.078836 TTCCCCGTCGCCCTTAGG 61.079 66.667 0.00 0.00 0.00 2.69
4364 6994 2.499685 CTTCCCCGTCGCCCTTAG 59.500 66.667 0.00 0.00 0.00 2.18
4365 6995 3.078836 CCTTCCCCGTCGCCCTTA 61.079 66.667 0.00 0.00 0.00 2.69
4371 7001 4.925576 CGATCGCCTTCCCCGTCG 62.926 72.222 0.26 0.00 0.00 5.12
4375 7005 4.951963 CTCGCGATCGCCTTCCCC 62.952 72.222 32.63 5.53 37.98 4.81
4376 7006 4.951963 CCTCGCGATCGCCTTCCC 62.952 72.222 32.63 6.30 37.98 3.97
4388 7018 3.341835 GCCTAGCAATCGCCTCGC 61.342 66.667 0.00 0.00 39.83 5.03
4389 7019 2.663188 GGCCTAGCAATCGCCTCG 60.663 66.667 0.00 0.00 39.70 4.63
4390 7020 2.663188 CGGCCTAGCAATCGCCTC 60.663 66.667 0.00 0.00 40.70 4.70
4391 7021 4.918201 GCGGCCTAGCAATCGCCT 62.918 66.667 0.00 0.00 42.02 5.52
4395 7025 3.515316 TAGCGGCGGCCTAGCAATC 62.515 63.158 18.34 0.00 41.24 2.67
4396 7026 3.521529 CTAGCGGCGGCCTAGCAAT 62.522 63.158 18.34 1.80 41.24 3.56
4397 7027 4.221422 CTAGCGGCGGCCTAGCAA 62.221 66.667 18.34 0.00 41.24 3.91
4401 7031 3.736996 TAACCCTAGCGGCGGCCTA 62.737 63.158 18.34 2.39 41.24 3.93
4403 7033 4.603946 CTAACCCTAGCGGCGGCC 62.604 72.222 13.24 9.54 41.24 6.13
4404 7034 4.603946 CCTAACCCTAGCGGCGGC 62.604 72.222 9.78 8.43 40.37 6.53
4405 7035 2.248086 AAACCTAACCCTAGCGGCGG 62.248 60.000 9.78 0.00 33.26 6.13
4406 7036 0.392060 AAAACCTAACCCTAGCGGCG 60.392 55.000 0.51 0.51 33.26 6.46
4407 7037 1.741706 GAAAAACCTAACCCTAGCGGC 59.258 52.381 0.00 0.00 33.26 6.53
4408 7038 2.362736 GGAAAAACCTAACCCTAGCGG 58.637 52.381 0.00 0.00 35.41 5.52
4409 7039 2.004733 CGGAAAAACCTAACCCTAGCG 58.995 52.381 0.00 0.00 36.31 4.26
4410 7040 1.741706 GCGGAAAAACCTAACCCTAGC 59.258 52.381 0.00 0.00 36.31 3.42
4411 7041 2.745821 GTGCGGAAAAACCTAACCCTAG 59.254 50.000 0.00 0.00 36.31 3.02
4412 7042 2.781923 GTGCGGAAAAACCTAACCCTA 58.218 47.619 0.00 0.00 36.31 3.53
4413 7043 1.612676 GTGCGGAAAAACCTAACCCT 58.387 50.000 0.00 0.00 36.31 4.34
4414 7044 0.239082 CGTGCGGAAAAACCTAACCC 59.761 55.000 0.00 0.00 36.31 4.11
4415 7045 0.239082 CCGTGCGGAAAAACCTAACC 59.761 55.000 4.35 0.00 37.50 2.85
4416 7046 0.239082 CCCGTGCGGAAAAACCTAAC 59.761 55.000 12.71 0.00 37.50 2.34
4417 7047 0.890090 CCCCGTGCGGAAAAACCTAA 60.890 55.000 12.71 0.00 37.50 2.69
4418 7048 1.302671 CCCCGTGCGGAAAAACCTA 60.303 57.895 12.71 0.00 37.50 3.08
4419 7049 2.596338 CCCCGTGCGGAAAAACCT 60.596 61.111 12.71 0.00 37.50 3.50
4420 7050 3.676605 CCCCCGTGCGGAAAAACC 61.677 66.667 12.71 0.00 37.50 3.27
4421 7051 2.908428 ACCCCCGTGCGGAAAAAC 60.908 61.111 12.71 0.00 37.50 2.43
4422 7052 2.907917 CACCCCCGTGCGGAAAAA 60.908 61.111 12.71 0.00 37.50 1.94
4423 7053 3.835790 CTCACCCCCGTGCGGAAAA 62.836 63.158 12.71 0.00 40.04 2.29
4424 7054 4.323477 CTCACCCCCGTGCGGAAA 62.323 66.667 12.71 0.00 40.04 3.13
4427 7057 4.096003 AATCTCACCCCCGTGCGG 62.096 66.667 3.25 3.25 40.04 5.69
4428 7058 2.819595 CAATCTCACCCCCGTGCG 60.820 66.667 0.00 0.00 40.04 5.34
4429 7059 2.270874 ATCCAATCTCACCCCCGTGC 62.271 60.000 0.00 0.00 40.04 5.34
4430 7060 0.179045 GATCCAATCTCACCCCCGTG 60.179 60.000 0.00 0.00 41.72 4.94
4431 7061 0.326618 AGATCCAATCTCACCCCCGT 60.327 55.000 0.00 0.00 33.42 5.28
4432 7062 2.532854 AGATCCAATCTCACCCCCG 58.467 57.895 0.00 0.00 33.42 5.73
4440 7070 1.759445 CAGTCACCGGAGATCCAATCT 59.241 52.381 9.46 0.00 43.70 2.40
4441 7071 1.808133 GCAGTCACCGGAGATCCAATC 60.808 57.143 9.46 0.00 35.14 2.67
4442 7072 0.179000 GCAGTCACCGGAGATCCAAT 59.821 55.000 9.46 0.00 35.14 3.16
4443 7073 0.904865 AGCAGTCACCGGAGATCCAA 60.905 55.000 9.46 0.00 35.14 3.53
4444 7074 1.305297 AGCAGTCACCGGAGATCCA 60.305 57.895 9.46 0.00 35.14 3.41
4445 7075 1.439644 GAGCAGTCACCGGAGATCC 59.560 63.158 9.46 0.00 0.00 3.36
4446 7076 1.064946 CGAGCAGTCACCGGAGATC 59.935 63.158 9.46 0.00 0.00 2.75
4447 7077 0.965866 TTCGAGCAGTCACCGGAGAT 60.966 55.000 9.46 0.00 0.00 2.75
4448 7078 1.602605 TTCGAGCAGTCACCGGAGA 60.603 57.895 9.46 1.33 0.00 3.71
4449 7079 1.444553 GTTCGAGCAGTCACCGGAG 60.445 63.158 9.46 0.00 0.00 4.63
4450 7080 2.649034 GTTCGAGCAGTCACCGGA 59.351 61.111 9.46 0.00 0.00 5.14
4451 7081 2.805353 CGTTCGAGCAGTCACCGG 60.805 66.667 0.00 0.00 0.00 5.28
4452 7082 2.805353 CCGTTCGAGCAGTCACCG 60.805 66.667 0.00 0.00 0.00 4.94
4453 7083 3.112709 GCCGTTCGAGCAGTCACC 61.113 66.667 0.00 0.00 0.00 4.02
4454 7084 3.470567 CGCCGTTCGAGCAGTCAC 61.471 66.667 0.00 0.00 41.67 3.67
4455 7085 3.666253 TCGCCGTTCGAGCAGTCA 61.666 61.111 0.00 0.00 43.16 3.41
4477 7107 2.746277 ATCAACCGCGGGAACAGC 60.746 61.111 31.76 0.00 0.00 4.40
4478 7108 2.452813 CGATCAACCGCGGGAACAG 61.453 63.158 31.76 13.93 0.00 3.16
4479 7109 2.433491 CGATCAACCGCGGGAACA 60.433 61.111 31.76 10.69 0.00 3.18
4480 7110 3.192922 CCGATCAACCGCGGGAAC 61.193 66.667 31.76 15.49 43.67 3.62
4485 7115 3.913573 CTTCGCCGATCAACCGCG 61.914 66.667 0.00 0.00 0.00 6.46
4486 7116 3.564027 CCTTCGCCGATCAACCGC 61.564 66.667 0.00 0.00 0.00 5.68
4487 7117 1.296056 AAACCTTCGCCGATCAACCG 61.296 55.000 0.00 0.00 0.00 4.44
4488 7118 0.879090 AAAACCTTCGCCGATCAACC 59.121 50.000 0.00 0.00 0.00 3.77
4489 7119 1.804748 AGAAAACCTTCGCCGATCAAC 59.195 47.619 0.00 0.00 36.61 3.18
4490 7120 2.178912 AGAAAACCTTCGCCGATCAA 57.821 45.000 0.00 0.00 36.61 2.57
4491 7121 2.073816 GAAGAAAACCTTCGCCGATCA 58.926 47.619 0.00 0.00 41.54 2.92
4492 7122 2.808157 GAAGAAAACCTTCGCCGATC 57.192 50.000 0.00 0.00 41.54 3.69
4500 7130 1.202818 AGCGCTCCTGAAGAAAACCTT 60.203 47.619 2.64 0.00 37.93 3.50
4501 7131 0.398318 AGCGCTCCTGAAGAAAACCT 59.602 50.000 2.64 0.00 0.00 3.50
4502 7132 0.799393 GAGCGCTCCTGAAGAAAACC 59.201 55.000 27.22 0.00 0.00 3.27
4503 7133 0.440371 CGAGCGCTCCTGAAGAAAAC 59.560 55.000 30.66 2.88 0.00 2.43
4504 7134 0.033504 ACGAGCGCTCCTGAAGAAAA 59.966 50.000 30.66 0.00 0.00 2.29
4505 7135 0.667487 CACGAGCGCTCCTGAAGAAA 60.667 55.000 30.66 0.00 0.00 2.52
4506 7136 1.080501 CACGAGCGCTCCTGAAGAA 60.081 57.895 30.66 0.00 0.00 2.52
4507 7137 2.268802 ACACGAGCGCTCCTGAAGA 61.269 57.895 33.57 0.00 0.00 2.87
4508 7138 2.091112 CACACGAGCGCTCCTGAAG 61.091 63.158 33.57 23.45 0.00 3.02
4509 7139 2.049156 CACACGAGCGCTCCTGAA 60.049 61.111 33.57 0.00 0.00 3.02
4510 7140 4.056125 CCACACGAGCGCTCCTGA 62.056 66.667 33.57 0.00 0.00 3.86
4511 7141 4.363990 ACCACACGAGCGCTCCTG 62.364 66.667 30.66 29.07 0.00 3.86
4512 7142 4.363990 CACCACACGAGCGCTCCT 62.364 66.667 30.66 17.58 0.00 3.69
4513 7143 4.664677 ACACCACACGAGCGCTCC 62.665 66.667 30.66 13.79 0.00 4.70
4514 7144 3.406361 CACACCACACGAGCGCTC 61.406 66.667 27.64 27.64 0.00 5.03
4515 7145 4.221422 ACACACCACACGAGCGCT 62.221 61.111 11.27 11.27 0.00 5.92
4516 7146 3.702555 GACACACCACACGAGCGC 61.703 66.667 0.00 0.00 0.00 5.92
4517 7147 3.036084 GGACACACCACACGAGCG 61.036 66.667 0.00 0.00 38.79 5.03
4518 7148 2.108157 TGGACACACCACACGAGC 59.892 61.111 0.00 0.00 44.64 5.03
4528 7158 4.321966 TTCGCCGCCATGGACACA 62.322 61.111 18.40 0.00 42.00 3.72
4529 7159 3.799755 GTTCGCCGCCATGGACAC 61.800 66.667 18.40 1.62 42.00 3.67
4532 7162 4.812476 CTCGTTCGCCGCCATGGA 62.812 66.667 18.40 0.00 42.00 3.41
4533 7163 4.812476 TCTCGTTCGCCGCCATGG 62.812 66.667 7.63 7.63 42.50 3.66
4534 7164 2.586079 ATCTCGTTCGCCGCCATG 60.586 61.111 0.00 0.00 36.19 3.66
4535 7165 2.279517 GATCTCGTTCGCCGCCAT 60.280 61.111 0.00 0.00 36.19 4.40
4536 7166 3.699955 CTGATCTCGTTCGCCGCCA 62.700 63.158 0.00 0.00 36.19 5.69
4537 7167 2.956964 CTGATCTCGTTCGCCGCC 60.957 66.667 0.00 0.00 36.19 6.13
4538 7168 1.941734 CTCTGATCTCGTTCGCCGC 60.942 63.158 0.00 0.00 36.19 6.53
4539 7169 1.298713 CCTCTGATCTCGTTCGCCG 60.299 63.158 0.00 0.00 38.13 6.46
4540 7170 1.066587 CCCTCTGATCTCGTTCGCC 59.933 63.158 0.00 0.00 0.00 5.54
4541 7171 1.066587 CCCCTCTGATCTCGTTCGC 59.933 63.158 0.00 0.00 0.00 4.70
4542 7172 1.066587 GCCCCTCTGATCTCGTTCG 59.933 63.158 0.00 0.00 0.00 3.95
4543 7173 1.066587 CGCCCCTCTGATCTCGTTC 59.933 63.158 0.00 0.00 0.00 3.95
4544 7174 1.379977 TCGCCCCTCTGATCTCGTT 60.380 57.895 0.00 0.00 0.00 3.85
4545 7175 2.122167 GTCGCCCCTCTGATCTCGT 61.122 63.158 0.00 0.00 0.00 4.18
4546 7176 2.725008 GTCGCCCCTCTGATCTCG 59.275 66.667 0.00 0.00 0.00 4.04
4547 7177 1.758514 TGGTCGCCCCTCTGATCTC 60.759 63.158 0.00 0.00 0.00 2.75
4548 7178 2.060980 GTGGTCGCCCCTCTGATCT 61.061 63.158 0.00 0.00 0.00 2.75
4549 7179 2.501610 GTGGTCGCCCCTCTGATC 59.498 66.667 0.00 0.00 0.00 2.92
4550 7180 3.461773 CGTGGTCGCCCCTCTGAT 61.462 66.667 0.00 0.00 0.00 2.90
4585 7215 2.895372 GTCGTATGCTTGCGGGGG 60.895 66.667 10.03 0.00 0.00 5.40
4586 7216 3.261951 CGTCGTATGCTTGCGGGG 61.262 66.667 10.03 0.00 0.00 5.73
4587 7217 2.202690 TCGTCGTATGCTTGCGGG 60.203 61.111 10.03 3.52 0.00 6.13
4588 7218 2.845739 CGTCGTCGTATGCTTGCGG 61.846 63.158 10.03 0.00 0.00 5.69
4589 7219 2.608204 CGTCGTCGTATGCTTGCG 59.392 61.111 3.65 3.65 0.00 4.85
4590 7220 2.995482 CCGTCGTCGTATGCTTGC 59.005 61.111 0.71 0.00 35.01 4.01
4591 7221 2.845739 CGCCGTCGTCGTATGCTTG 61.846 63.158 0.71 0.00 35.01 4.01
4592 7222 2.578713 CGCCGTCGTCGTATGCTT 60.579 61.111 0.71 0.00 35.01 3.91
4619 7249 4.802051 TGAATCCCCTGCTGCCGC 62.802 66.667 0.00 0.00 0.00 6.53
4620 7250 2.045045 TTGAATCCCCTGCTGCCG 60.045 61.111 0.00 0.00 0.00 5.69
4621 7251 2.409870 CGTTGAATCCCCTGCTGCC 61.410 63.158 0.00 0.00 0.00 4.85
4622 7252 2.409870 CCGTTGAATCCCCTGCTGC 61.410 63.158 0.00 0.00 0.00 5.25
4623 7253 2.409870 GCCGTTGAATCCCCTGCTG 61.410 63.158 0.00 0.00 0.00 4.41
4624 7254 2.044946 GCCGTTGAATCCCCTGCT 60.045 61.111 0.00 0.00 0.00 4.24
4625 7255 3.140814 GGCCGTTGAATCCCCTGC 61.141 66.667 0.00 0.00 0.00 4.85
4626 7256 2.440247 GGGCCGTTGAATCCCCTG 60.440 66.667 0.00 0.00 34.59 4.45
4627 7257 4.109675 CGGGCCGTTGAATCCCCT 62.110 66.667 19.97 0.00 36.69 4.79
4631 7261 4.419921 ACCCCGGGCCGTTGAATC 62.420 66.667 26.32 0.00 0.00 2.52
4632 7262 4.733542 CACCCCGGGCCGTTGAAT 62.734 66.667 26.32 2.07 0.00 2.57
4657 7287 4.424711 TTGCCATCAGCCGGGGAC 62.425 66.667 2.18 0.00 42.71 4.46
4658 7288 4.113815 CTTGCCATCAGCCGGGGA 62.114 66.667 2.18 0.00 42.71 4.81
4659 7289 4.113815 TCTTGCCATCAGCCGGGG 62.114 66.667 2.18 0.00 42.71 5.73
4660 7290 1.971505 TAGTCTTGCCATCAGCCGGG 61.972 60.000 2.18 0.00 42.71 5.73
4661 7291 0.811616 GTAGTCTTGCCATCAGCCGG 60.812 60.000 0.00 0.00 42.71 6.13
4662 7292 1.148157 CGTAGTCTTGCCATCAGCCG 61.148 60.000 0.00 0.00 42.71 5.52
4663 7293 0.811616 CCGTAGTCTTGCCATCAGCC 60.812 60.000 0.00 0.00 42.71 4.85
4664 7294 2.682893 CCGTAGTCTTGCCATCAGC 58.317 57.895 0.00 0.00 44.14 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.