Multiple sequence alignment - TraesCS7A01G304200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G304200 chr7A 100.000 4170 0 0 1 4170 428341698 428337529 0.000000e+00 7701.0
1 TraesCS7A01G304200 chr7A 98.246 114 2 0 1527 1640 428340058 428339945 2.540000e-47 200.0
2 TraesCS7A01G304200 chr7A 98.246 114 2 0 1641 1754 428340172 428340059 2.540000e-47 200.0
3 TraesCS7A01G304200 chr7B 90.252 1826 89 31 1846 3627 374775923 374774143 0.000000e+00 2303.0
4 TraesCS7A01G304200 chr7B 95.038 524 24 2 227 748 374983219 374982696 0.000000e+00 822.0
5 TraesCS7A01G304200 chr7B 95.079 508 24 1 883 1389 374802783 374802276 0.000000e+00 798.0
6 TraesCS7A01G304200 chr7B 94.208 259 13 2 1384 1640 374776345 374776087 1.090000e-105 394.0
7 TraesCS7A01G304200 chr7B 86.851 289 16 13 1 267 374983503 374983215 1.880000e-78 303.0
8 TraesCS7A01G304200 chr7B 90.541 222 11 3 1642 1853 374776200 374775979 6.820000e-73 285.0
9 TraesCS7A01G304200 chr7B 84.663 163 23 1 3907 4069 271070769 271070929 1.200000e-35 161.0
10 TraesCS7A01G304200 chr7B 89.362 94 6 2 3818 3908 374773624 374773532 9.470000e-22 115.0
11 TraesCS7A01G304200 chr7D 94.234 1318 42 5 2189 3501 379768811 379767523 0.000000e+00 1982.0
12 TraesCS7A01G304200 chr7D 95.405 740 29 2 879 1617 379770322 379769587 0.000000e+00 1173.0
13 TraesCS7A01G304200 chr7D 93.353 662 26 7 227 887 379826059 379825415 0.000000e+00 963.0
14 TraesCS7A01G304200 chr7D 93.678 348 13 4 1846 2190 379769311 379768970 2.880000e-141 512.0
15 TraesCS7A01G304200 chr7D 85.763 295 14 6 1 267 379826349 379826055 1.900000e-73 287.0
16 TraesCS7A01G304200 chr7D 84.806 283 27 8 3539 3808 379767521 379767242 1.910000e-68 270.0
17 TraesCS7A01G304200 chr7D 83.436 163 27 0 3907 4069 269697077 269697239 7.220000e-33 152.0
18 TraesCS7A01G304200 chr7D 95.652 92 3 1 1641 1731 379769678 379769587 3.360000e-31 147.0
19 TraesCS7A01G304200 chr7D 93.000 100 6 1 1753 1851 379769474 379769375 1.210000e-30 145.0
20 TraesCS7A01G304200 chr3D 86.792 159 21 0 3911 4069 332508107 332507949 1.190000e-40 178.0
21 TraesCS7A01G304200 chr3D 85.276 163 24 0 3907 4069 388511691 388511853 7.170000e-38 169.0
22 TraesCS7A01G304200 chr3D 95.192 104 5 0 4067 4170 85882741 85882844 9.270000e-37 165.0
23 TraesCS7A01G304200 chr1B 89.362 141 14 1 3911 4051 544448272 544448133 4.280000e-40 176.0
24 TraesCS7A01G304200 chr1B 86.364 154 20 1 3898 4051 394894096 394894248 2.580000e-37 167.0
25 TraesCS7A01G304200 chr1A 96.154 104 4 0 4067 4170 533705522 533705625 1.990000e-38 171.0
26 TraesCS7A01G304200 chr1A 88.608 79 7 2 3731 3808 156671204 156671281 1.230000e-15 95.3
27 TraesCS7A01G304200 chr4B 87.586 145 18 0 3907 4051 445262140 445262284 7.170000e-38 169.0
28 TraesCS7A01G304200 chr4B 84.615 91 12 2 3715 3804 665061716 665061627 5.740000e-14 89.8
29 TraesCS7A01G304200 chr2D 96.117 103 4 0 4068 4170 466693145 466693247 7.170000e-38 169.0
30 TraesCS7A01G304200 chr2D 92.241 116 9 0 4055 4170 554434293 554434408 9.270000e-37 165.0
31 TraesCS7A01G304200 chr2D 86.093 151 20 1 3904 4053 34965562 34965412 1.200000e-35 161.0
32 TraesCS7A01G304200 chrUn 95.192 104 5 0 4067 4170 32189692 32189795 9.270000e-37 165.0
33 TraesCS7A01G304200 chrUn 83.871 93 13 2 3717 3808 87230874 87230783 2.070000e-13 87.9
34 TraesCS7A01G304200 chr5D 95.192 104 5 0 4067 4170 425853854 425853751 9.270000e-37 165.0
35 TraesCS7A01G304200 chr5D 85.714 91 9 4 3715 3803 437356708 437356620 4.440000e-15 93.5
36 TraesCS7A01G304200 chr5B 95.192 104 5 0 4067 4170 692123613 692123716 9.270000e-37 165.0
37 TraesCS7A01G304200 chr4D 95.192 104 5 0 4067 4170 44834025 44833922 9.270000e-37 165.0
38 TraesCS7A01G304200 chr1D 95.192 104 5 0 4067 4170 339104417 339104314 9.270000e-37 165.0
39 TraesCS7A01G304200 chr2A 84.049 163 25 1 3907 4069 149056823 149056662 5.580000e-34 156.0
40 TraesCS7A01G304200 chr2B 83.750 160 24 2 3907 4066 494261161 494261318 2.600000e-32 150.0
41 TraesCS7A01G304200 chr6D 82.203 118 17 4 3692 3808 162264234 162264120 9.540000e-17 99.0
42 TraesCS7A01G304200 chr6D 85.263 95 12 2 3715 3808 450470329 450470422 3.430000e-16 97.1
43 TraesCS7A01G304200 chr6B 87.952 83 7 3 3731 3812 87040509 87040429 1.230000e-15 95.3
44 TraesCS7A01G304200 chr6A 80.508 118 17 6 3692 3808 615728940 615729052 7.430000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G304200 chr7A 428337529 428341698 4169 True 2700.333333 7701 98.830667 1 4170 3 chr7A.!!$R1 4169
1 TraesCS7A01G304200 chr7B 374802276 374802783 507 True 798.000000 798 95.079000 883 1389 1 chr7B.!!$R1 506
2 TraesCS7A01G304200 chr7B 374773532 374776345 2813 True 774.250000 2303 91.090750 1384 3908 4 chr7B.!!$R2 2524
3 TraesCS7A01G304200 chr7B 374982696 374983503 807 True 562.500000 822 90.944500 1 748 2 chr7B.!!$R3 747
4 TraesCS7A01G304200 chr7D 379767242 379770322 3080 True 704.833333 1982 92.795833 879 3808 6 chr7D.!!$R1 2929
5 TraesCS7A01G304200 chr7D 379825415 379826349 934 True 625.000000 963 89.558000 1 887 2 chr7D.!!$R2 886

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
240 275 0.038709 ACTCGTGCTGCTCTTGTCTC 60.039 55.0 0.00 0.0 0.00 3.36 F
757 830 0.040646 TCCCTTCCTCGCCTTCTACA 59.959 55.0 0.00 0.0 0.00 2.74 F
836 909 0.108281 GTAAAGCCCAGTCCGTCTCC 60.108 60.0 0.00 0.0 0.00 3.71 F
1646 1805 0.886563 AAGCTGCAGAATGGTTGCTC 59.113 50.0 20.43 0.0 42.02 4.26 F
2523 2918 0.835941 AATGCAACAAAGGTGGCCAA 59.164 45.0 7.24 0.0 43.75 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1774 1933 0.465097 CCTGTCATCTGGTGCCCATC 60.465 60.0 0.00 0.00 30.82 3.51 R
2422 2817 0.462937 TGCCGCTTGGTAATATGCGT 60.463 50.0 0.00 0.00 45.90 5.24 R
2423 2818 0.874390 ATGCCGCTTGGTAATATGCG 59.126 50.0 0.00 0.00 46.74 4.73 R
3076 3501 0.321122 CTCCAACACAGACTCCCAGC 60.321 60.0 0.00 0.00 0.00 4.85 R
3983 4766 0.037975 TCTAAAACAGGGCGGACGTC 60.038 55.0 7.13 7.13 0.00 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
149 169 4.706842 AAAGAAGAACCACCTGCTCTTA 57.293 40.909 0.00 0.00 29.59 2.10
212 244 2.163412 CAGTTCCAGTCTCTCTTCCTCG 59.837 54.545 0.00 0.00 0.00 4.63
224 259 0.658897 CTTCCTCGTCCTCGCTACTC 59.341 60.000 0.00 0.00 36.96 2.59
226 261 1.814586 CCTCGTCCTCGCTACTCGT 60.815 63.158 0.00 0.00 39.67 4.18
240 275 0.038709 ACTCGTGCTGCTCTTGTCTC 60.039 55.000 0.00 0.00 0.00 3.36
242 277 1.739562 CGTGCTGCTCTTGTCTCCC 60.740 63.158 0.00 0.00 0.00 4.30
251 286 2.093711 GCTCTTGTCTCCCTCTTCCTTC 60.094 54.545 0.00 0.00 0.00 3.46
395 466 1.251527 GCACCCTCGTCTCCTTCTCA 61.252 60.000 0.00 0.00 0.00 3.27
581 652 0.250295 CCAGTGCAAGAGGGTTCGAA 60.250 55.000 0.00 0.00 0.00 3.71
591 662 4.430765 GGTTCGAAGCGGCGGAGA 62.431 66.667 12.13 0.00 0.00 3.71
629 700 1.075659 GGAGTTGGCCTGGAGCTTT 59.924 57.895 3.32 0.00 43.05 3.51
632 703 0.329596 AGTTGGCCTGGAGCTTTAGG 59.670 55.000 3.32 11.72 43.05 2.69
644 715 1.810030 CTTTAGGAGCACGGCGTCC 60.810 63.158 10.85 9.20 0.00 4.79
753 826 3.493767 AATATTCCCTTCCTCGCCTTC 57.506 47.619 0.00 0.00 0.00 3.46
754 827 2.176247 TATTCCCTTCCTCGCCTTCT 57.824 50.000 0.00 0.00 0.00 2.85
755 828 2.176247 ATTCCCTTCCTCGCCTTCTA 57.824 50.000 0.00 0.00 0.00 2.10
756 829 1.192428 TTCCCTTCCTCGCCTTCTAC 58.808 55.000 0.00 0.00 0.00 2.59
757 830 0.040646 TCCCTTCCTCGCCTTCTACA 59.959 55.000 0.00 0.00 0.00 2.74
758 831 0.461961 CCCTTCCTCGCCTTCTACAG 59.538 60.000 0.00 0.00 0.00 2.74
759 832 1.475403 CCTTCCTCGCCTTCTACAGA 58.525 55.000 0.00 0.00 0.00 3.41
788 861 2.032528 TGGGTTCTGCCTTCTGCG 59.967 61.111 0.00 0.00 45.60 5.18
789 862 2.032681 GGGTTCTGCCTTCTGCGT 59.967 61.111 0.00 0.00 45.60 5.24
790 863 1.295423 GGGTTCTGCCTTCTGCGTA 59.705 57.895 0.00 0.00 45.60 4.42
834 907 0.320697 GTGTAAAGCCCAGTCCGTCT 59.679 55.000 0.00 0.00 0.00 4.18
836 909 0.108281 GTAAAGCCCAGTCCGTCTCC 60.108 60.000 0.00 0.00 0.00 3.71
837 910 1.601419 TAAAGCCCAGTCCGTCTCCG 61.601 60.000 0.00 0.00 0.00 4.63
840 913 3.450115 CCCAGTCCGTCTCCGTCC 61.450 72.222 0.00 0.00 0.00 4.79
841 914 3.450115 CCAGTCCGTCTCCGTCCC 61.450 72.222 0.00 0.00 0.00 4.46
842 915 2.675423 CAGTCCGTCTCCGTCCCA 60.675 66.667 0.00 0.00 0.00 4.37
843 916 2.361357 AGTCCGTCTCCGTCCCAG 60.361 66.667 0.00 0.00 0.00 4.45
844 917 2.675772 GTCCGTCTCCGTCCCAGT 60.676 66.667 0.00 0.00 0.00 4.00
845 918 2.360852 TCCGTCTCCGTCCCAGTC 60.361 66.667 0.00 0.00 0.00 3.51
846 919 2.361357 CCGTCTCCGTCCCAGTCT 60.361 66.667 0.00 0.00 0.00 3.24
847 920 1.077930 CCGTCTCCGTCCCAGTCTA 60.078 63.158 0.00 0.00 0.00 2.59
848 921 1.096386 CCGTCTCCGTCCCAGTCTAG 61.096 65.000 0.00 0.00 0.00 2.43
854 927 1.762460 CGTCCCAGTCTAGGCCCAT 60.762 63.158 0.00 0.00 0.00 4.00
862 935 2.975489 CAGTCTAGGCCCATCCATTAGT 59.025 50.000 0.00 0.00 37.29 2.24
872 945 5.510179 GGCCCATCCATTAGTGATCAATTTG 60.510 44.000 0.00 0.00 34.01 2.32
1203 1277 1.749638 CGAGGCCACCTACGTCTCT 60.750 63.158 5.01 0.00 31.76 3.10
1291 1365 2.602267 TCCGAGGCACCCTTCGAA 60.602 61.111 0.00 0.00 31.76 3.71
1322 1396 2.677228 CAAGGCCGATTCCCCTGT 59.323 61.111 0.00 0.00 0.00 4.00
1422 1496 4.699522 GGTGAGCCCGCCGTTCTT 62.700 66.667 0.00 0.00 32.63 2.52
1467 1541 4.087892 GAAGAGGCTGCTGGCGGA 62.088 66.667 11.49 0.00 44.18 5.54
1644 1803 2.805845 CATAAGCTGCAGAATGGTTGC 58.194 47.619 20.43 0.00 41.86 4.17
1645 1804 2.205022 TAAGCTGCAGAATGGTTGCT 57.795 45.000 20.43 1.69 42.02 3.91
1646 1805 0.886563 AAGCTGCAGAATGGTTGCTC 59.113 50.000 20.43 0.00 42.02 4.26
1647 1806 0.964358 AGCTGCAGAATGGTTGCTCC 60.964 55.000 20.43 0.00 42.02 4.70
1659 1818 4.574674 TGGTTGCTCCATCTTACTGATT 57.425 40.909 0.00 0.00 41.93 2.57
1660 1819 5.692115 TGGTTGCTCCATCTTACTGATTA 57.308 39.130 0.00 0.00 41.93 1.75
1661 1820 5.674525 TGGTTGCTCCATCTTACTGATTAG 58.325 41.667 0.00 0.00 41.93 1.73
1662 1821 5.189736 TGGTTGCTCCATCTTACTGATTAGT 59.810 40.000 0.00 0.00 41.93 2.24
1663 1822 6.382859 TGGTTGCTCCATCTTACTGATTAGTA 59.617 38.462 0.00 0.00 41.93 1.82
1664 1823 6.702282 GGTTGCTCCATCTTACTGATTAGTAC 59.298 42.308 0.00 0.00 36.31 2.73
1665 1824 6.073327 TGCTCCATCTTACTGATTAGTACG 57.927 41.667 0.00 0.00 39.06 3.67
1666 1825 5.826208 TGCTCCATCTTACTGATTAGTACGA 59.174 40.000 6.35 6.35 40.56 3.43
1667 1826 6.144175 GCTCCATCTTACTGATTAGTACGAC 58.856 44.000 6.06 0.00 39.55 4.34
1668 1827 6.630444 TCCATCTTACTGATTAGTACGACC 57.370 41.667 6.06 0.00 39.55 4.79
1669 1828 6.363065 TCCATCTTACTGATTAGTACGACCT 58.637 40.000 6.06 0.00 39.55 3.85
1670 1829 7.512130 TCCATCTTACTGATTAGTACGACCTA 58.488 38.462 6.06 0.00 39.55 3.08
1671 1830 7.443575 TCCATCTTACTGATTAGTACGACCTAC 59.556 40.741 6.06 0.00 39.55 3.18
1672 1831 7.228108 CCATCTTACTGATTAGTACGACCTACA 59.772 40.741 6.06 0.00 39.55 2.74
1673 1832 8.618677 CATCTTACTGATTAGTACGACCTACAA 58.381 37.037 6.06 0.00 39.55 2.41
1674 1833 8.206325 TCTTACTGATTAGTACGACCTACAAG 57.794 38.462 0.00 0.00 39.06 3.16
1675 1834 5.831702 ACTGATTAGTACGACCTACAAGG 57.168 43.478 0.00 0.00 37.03 3.61
1676 1835 4.643784 ACTGATTAGTACGACCTACAAGGG 59.356 45.833 0.00 0.00 35.86 3.95
1677 1836 4.858850 TGATTAGTACGACCTACAAGGGA 58.141 43.478 0.00 0.00 40.58 4.20
1678 1837 5.452255 TGATTAGTACGACCTACAAGGGAT 58.548 41.667 0.00 0.00 40.58 3.85
1679 1838 5.301045 TGATTAGTACGACCTACAAGGGATG 59.699 44.000 0.00 0.00 40.58 3.51
1680 1839 3.097342 AGTACGACCTACAAGGGATGT 57.903 47.619 0.00 0.00 46.36 3.06
1681 1840 4.240881 AGTACGACCTACAAGGGATGTA 57.759 45.455 0.00 0.00 43.63 2.29
1682 1841 4.801164 AGTACGACCTACAAGGGATGTAT 58.199 43.478 0.00 0.00 43.42 2.29
1683 1842 4.826183 AGTACGACCTACAAGGGATGTATC 59.174 45.833 0.00 0.00 43.42 2.24
1684 1843 3.912248 ACGACCTACAAGGGATGTATCT 58.088 45.455 0.00 0.00 43.42 1.98
1685 1844 4.287552 ACGACCTACAAGGGATGTATCTT 58.712 43.478 0.00 0.00 43.42 2.40
1686 1845 4.715297 ACGACCTACAAGGGATGTATCTTT 59.285 41.667 0.00 0.00 43.42 2.52
1687 1846 5.050490 CGACCTACAAGGGATGTATCTTTG 58.950 45.833 0.00 7.57 43.42 2.77
1688 1847 4.781934 ACCTACAAGGGATGTATCTTTGC 58.218 43.478 0.00 0.00 43.42 3.68
1689 1848 4.475016 ACCTACAAGGGATGTATCTTTGCT 59.525 41.667 0.00 0.00 43.42 3.91
1690 1849 5.665812 ACCTACAAGGGATGTATCTTTGCTA 59.334 40.000 0.00 0.00 43.42 3.49
1691 1850 6.330250 ACCTACAAGGGATGTATCTTTGCTAT 59.670 38.462 0.00 0.00 43.42 2.97
1692 1851 7.512746 ACCTACAAGGGATGTATCTTTGCTATA 59.487 37.037 0.00 0.00 43.42 1.31
1693 1852 8.543774 CCTACAAGGGATGTATCTTTGCTATAT 58.456 37.037 8.50 0.00 43.42 0.86
1694 1853 9.376075 CTACAAGGGATGTATCTTTGCTATATG 57.624 37.037 8.50 0.00 43.42 1.78
1695 1854 7.977818 ACAAGGGATGTATCTTTGCTATATGA 58.022 34.615 8.50 0.00 41.63 2.15
1696 1855 8.439971 ACAAGGGATGTATCTTTGCTATATGAA 58.560 33.333 8.50 0.00 41.63 2.57
1697 1856 8.725148 CAAGGGATGTATCTTTGCTATATGAAC 58.275 37.037 0.00 0.00 0.00 3.18
1698 1857 7.977818 AGGGATGTATCTTTGCTATATGAACA 58.022 34.615 0.00 0.00 0.00 3.18
1699 1858 8.439971 AGGGATGTATCTTTGCTATATGAACAA 58.560 33.333 0.00 0.00 0.00 2.83
1700 1859 9.236006 GGGATGTATCTTTGCTATATGAACAAT 57.764 33.333 0.00 0.00 0.00 2.71
1705 1864 9.669353 GTATCTTTGCTATATGAACAATTGTGG 57.331 33.333 12.82 0.00 0.00 4.17
1706 1865 6.563422 TCTTTGCTATATGAACAATTGTGGC 58.437 36.000 12.82 8.26 0.00 5.01
1707 1866 5.911378 TTGCTATATGAACAATTGTGGCA 57.089 34.783 12.82 13.83 0.00 4.92
1708 1867 5.911378 TGCTATATGAACAATTGTGGCAA 57.089 34.783 12.82 5.66 0.00 4.52
1709 1868 5.649557 TGCTATATGAACAATTGTGGCAAC 58.350 37.500 12.82 2.85 0.00 4.17
1726 1885 5.731957 GGCAACAAAAAGGGTCCTAATAA 57.268 39.130 0.00 0.00 0.00 1.40
1727 1886 6.294361 GGCAACAAAAAGGGTCCTAATAAT 57.706 37.500 0.00 0.00 0.00 1.28
1728 1887 6.106003 GGCAACAAAAAGGGTCCTAATAATG 58.894 40.000 0.00 0.00 0.00 1.90
1729 1888 6.295632 GGCAACAAAAAGGGTCCTAATAATGT 60.296 38.462 0.00 0.00 0.00 2.71
1730 1889 7.093684 GGCAACAAAAAGGGTCCTAATAATGTA 60.094 37.037 0.00 0.00 0.00 2.29
1731 1890 7.973944 GCAACAAAAAGGGTCCTAATAATGTAG 59.026 37.037 0.00 0.00 0.00 2.74
1732 1891 9.020731 CAACAAAAAGGGTCCTAATAATGTAGT 57.979 33.333 0.00 0.00 0.00 2.73
1739 1898 8.911018 AGGGTCCTAATAATGTAGTATATGCA 57.089 34.615 0.00 0.00 0.00 3.96
1740 1899 8.759782 AGGGTCCTAATAATGTAGTATATGCAC 58.240 37.037 0.00 0.00 0.00 4.57
1741 1900 8.537016 GGGTCCTAATAATGTAGTATATGCACA 58.463 37.037 0.00 0.00 0.00 4.57
1742 1901 9.938280 GGTCCTAATAATGTAGTATATGCACAA 57.062 33.333 0.00 0.00 0.00 3.33
1744 1903 9.653287 TCCTAATAATGTAGTATATGCACAAGC 57.347 33.333 0.00 0.00 42.57 4.01
1745 1904 9.658799 CCTAATAATGTAGTATATGCACAAGCT 57.341 33.333 0.00 0.00 42.74 3.74
1774 1933 5.940192 TGTGCCTACTTGTTTGAACTATG 57.060 39.130 0.00 0.00 0.00 2.23
1775 1934 5.616270 TGTGCCTACTTGTTTGAACTATGA 58.384 37.500 0.00 0.00 0.00 2.15
1776 1935 6.237901 TGTGCCTACTTGTTTGAACTATGAT 58.762 36.000 0.00 0.00 0.00 2.45
1777 1936 6.149308 TGTGCCTACTTGTTTGAACTATGATG 59.851 38.462 0.00 0.00 0.00 3.07
1781 1941 4.406456 ACTTGTTTGAACTATGATGGGCA 58.594 39.130 0.00 0.00 0.00 5.36
1898 2129 2.623878 TTGCTCGTTCAGGGTGTTTA 57.376 45.000 0.00 0.00 0.00 2.01
1989 2222 6.690194 ATGGAAAGCTGCTTTAGATGTTAG 57.310 37.500 26.08 0.00 33.49 2.34
1990 2223 5.804639 TGGAAAGCTGCTTTAGATGTTAGA 58.195 37.500 26.08 1.89 33.49 2.10
2008 2241 2.267192 AGACCCTCCCTGTAACTTTCC 58.733 52.381 0.00 0.00 0.00 3.13
2244 2639 8.671384 ATTATTTATTTCTGCGTTGGCTAGTA 57.329 30.769 0.00 0.00 40.82 1.82
2415 2810 8.314751 TGCTATTATCCTTTAGTAGCCTGATTC 58.685 37.037 0.00 0.00 37.54 2.52
2417 2812 7.633018 ATTATCCTTTAGTAGCCTGATTCCA 57.367 36.000 0.00 0.00 0.00 3.53
2418 2813 7.633018 TTATCCTTTAGTAGCCTGATTCCAT 57.367 36.000 0.00 0.00 0.00 3.41
2419 2814 8.736097 TTATCCTTTAGTAGCCTGATTCCATA 57.264 34.615 0.00 0.00 0.00 2.74
2420 2815 7.633018 ATCCTTTAGTAGCCTGATTCCATAA 57.367 36.000 0.00 0.00 0.00 1.90
2421 2816 7.633018 TCCTTTAGTAGCCTGATTCCATAAT 57.367 36.000 0.00 0.00 0.00 1.28
2422 2817 8.736097 TCCTTTAGTAGCCTGATTCCATAATA 57.264 34.615 0.00 0.00 0.00 0.98
2423 2818 8.594550 TCCTTTAGTAGCCTGATTCCATAATAC 58.405 37.037 0.00 0.00 0.00 1.89
2424 2819 7.545965 CCTTTAGTAGCCTGATTCCATAATACG 59.454 40.741 0.00 0.00 0.00 3.06
2425 2820 4.822026 AGTAGCCTGATTCCATAATACGC 58.178 43.478 0.00 0.00 0.00 4.42
2426 2821 3.769739 AGCCTGATTCCATAATACGCA 57.230 42.857 0.00 0.00 0.00 5.24
2427 2822 4.292186 AGCCTGATTCCATAATACGCAT 57.708 40.909 0.00 0.00 0.00 4.73
2428 2823 5.420725 AGCCTGATTCCATAATACGCATA 57.579 39.130 0.00 0.00 0.00 3.14
2429 2824 5.994250 AGCCTGATTCCATAATACGCATAT 58.006 37.500 0.00 0.00 0.00 1.78
2430 2825 6.418101 AGCCTGATTCCATAATACGCATATT 58.582 36.000 0.00 0.00 35.16 1.28
2431 2826 7.564793 AGCCTGATTCCATAATACGCATATTA 58.435 34.615 0.00 0.00 37.60 0.98
2432 2827 7.495934 AGCCTGATTCCATAATACGCATATTAC 59.504 37.037 0.00 0.00 36.34 1.89
2433 2828 7.254795 GCCTGATTCCATAATACGCATATTACC 60.255 40.741 0.00 0.00 36.34 2.85
2434 2829 7.768582 CCTGATTCCATAATACGCATATTACCA 59.231 37.037 0.00 0.00 36.34 3.25
2435 2830 9.161629 CTGATTCCATAATACGCATATTACCAA 57.838 33.333 0.00 0.00 36.34 3.67
2436 2831 9.161629 TGATTCCATAATACGCATATTACCAAG 57.838 33.333 0.00 0.00 36.34 3.61
2437 2832 6.978343 TCCATAATACGCATATTACCAAGC 57.022 37.500 0.00 0.00 36.34 4.01
2441 2836 2.316237 CGCATATTACCAAGCGGCA 58.684 52.632 1.45 0.00 45.83 5.69
2442 2837 0.874390 CGCATATTACCAAGCGGCAT 59.126 50.000 1.45 0.00 45.83 4.40
2443 2838 2.073056 CGCATATTACCAAGCGGCATA 58.927 47.619 1.45 0.00 45.83 3.14
2472 2867 4.531732 CCCCCTCTTCAAAATTGGATCAAA 59.468 41.667 0.00 0.00 0.00 2.69
2523 2918 0.835941 AATGCAACAAAGGTGGCCAA 59.164 45.000 7.24 0.00 43.75 4.52
2527 2922 2.296792 GCAACAAAGGTGGCCAAATTT 58.703 42.857 7.24 9.04 38.06 1.82
2717 3141 9.406828 GTATTAGGTTCCATGAGTTTTTGTTTC 57.593 33.333 0.00 0.00 0.00 2.78
2760 3184 4.331968 TCTTGTTGTGTTCAAGGTTCAGT 58.668 39.130 5.95 0.00 41.52 3.41
2787 3212 4.892934 AGTGGGAAATTGTTGCTAAGTCAA 59.107 37.500 0.00 0.00 0.00 3.18
2797 3222 7.667043 TTGTTGCTAAGTCAAGGTATTACAG 57.333 36.000 0.00 0.00 0.00 2.74
2831 3256 6.583050 GCCGTGTCTATTACTGACATTATCTC 59.417 42.308 0.00 0.00 44.74 2.75
3076 3501 3.131478 GTTGGCGTCGGGATTGGG 61.131 66.667 0.00 0.00 0.00 4.12
3211 3643 2.308690 GGACGGCCAGTAAGTAGAGAT 58.691 52.381 0.00 0.00 0.00 2.75
3234 3666 1.560004 CCATCCGATGATGTTCCGCG 61.560 60.000 10.12 0.00 45.78 6.46
3235 3667 1.956170 ATCCGATGATGTTCCGCGC 60.956 57.895 0.00 0.00 0.00 6.86
3297 3729 4.847255 GCATTGTTGCTGGTCGTC 57.153 55.556 0.00 0.00 45.77 4.20
3326 3758 7.217200 AGTTTTTGACTTGTGTAGCTCTCATA 58.783 34.615 0.00 0.00 33.92 2.15
3385 3817 3.037549 TGGAAGTGGCAAAAATGGACTT 58.962 40.909 0.00 0.00 0.00 3.01
3421 3853 3.057876 CGCACTGTGGCCTTATTTTGTAA 60.058 43.478 10.21 0.00 0.00 2.41
3439 3871 5.862924 TGTAAGCTTCAGAATTGTGCTAC 57.137 39.130 0.00 0.00 35.44 3.58
3513 3945 3.057104 TGTCGGATGTATGTTTCGTCAGT 60.057 43.478 0.00 0.00 0.00 3.41
3535 3967 7.976175 TCAGTGTTTAGAAGCACATGATAGTAG 59.024 37.037 11.18 0.00 41.82 2.57
3537 3969 8.967918 AGTGTTTAGAAGCACATGATAGTAGTA 58.032 33.333 11.18 0.00 41.82 1.82
3546 3981 7.942990 AGCACATGATAGTAGTAGGTAAAGAC 58.057 38.462 0.00 0.00 0.00 3.01
3586 4021 1.069823 CTATGATGAGCCGTTCTGCCT 59.930 52.381 0.00 0.00 0.00 4.75
3628 4064 2.488153 GTGTTGTAGATGGGAACTTGGC 59.512 50.000 0.00 0.00 0.00 4.52
3653 4089 1.667154 GGGGGAAAAGAATGCTCGGC 61.667 60.000 0.00 0.00 0.00 5.54
3683 4391 7.543172 GGATCGTGTACAGTAGTTGATAAAACA 59.457 37.037 0.00 0.00 0.00 2.83
3689 4397 9.048446 TGTACAGTAGTTGATAAAACAAAGGTC 57.952 33.333 0.00 0.00 0.00 3.85
3690 4398 9.048446 GTACAGTAGTTGATAAAACAAAGGTCA 57.952 33.333 0.00 0.00 0.00 4.02
3703 4413 5.931441 ACAAAGGTCAAAGAGAGAAATCG 57.069 39.130 0.00 0.00 0.00 3.34
3755 4474 6.349300 TCTCTTAGCATAAATTGTCTCACCC 58.651 40.000 0.00 0.00 0.00 4.61
3756 4475 6.061022 TCTTAGCATAAATTGTCTCACCCA 57.939 37.500 0.00 0.00 0.00 4.51
3758 4477 6.599244 TCTTAGCATAAATTGTCTCACCCAAG 59.401 38.462 0.00 0.00 0.00 3.61
3759 4478 3.445096 AGCATAAATTGTCTCACCCAAGC 59.555 43.478 0.00 0.00 0.00 4.01
3763 4482 6.458210 CATAAATTGTCTCACCCAAGCTTTT 58.542 36.000 0.00 0.00 0.00 2.27
3764 4483 7.601856 CATAAATTGTCTCACCCAAGCTTTTA 58.398 34.615 0.00 0.00 0.00 1.52
3766 4485 3.140325 TGTCTCACCCAAGCTTTTAGG 57.860 47.619 0.00 0.07 0.00 2.69
3768 4487 3.137544 TGTCTCACCCAAGCTTTTAGGAA 59.862 43.478 12.74 1.76 0.00 3.36
3804 4523 5.986501 AGATAAGGCTAAGAGATAACCCG 57.013 43.478 0.00 0.00 0.00 5.28
3809 4528 3.967987 AGGCTAAGAGATAACCCGTTGAT 59.032 43.478 0.00 0.00 0.00 2.57
3810 4529 5.145564 AGGCTAAGAGATAACCCGTTGATA 58.854 41.667 0.00 0.00 0.00 2.15
3812 4531 5.927115 GGCTAAGAGATAACCCGTTGATAAG 59.073 44.000 0.00 0.00 0.00 1.73
3813 4532 5.927115 GCTAAGAGATAACCCGTTGATAAGG 59.073 44.000 0.00 0.00 0.00 2.69
3814 4533 4.338379 AGAGATAACCCGTTGATAAGGC 57.662 45.455 0.00 0.00 0.00 4.35
3815 4534 3.967987 AGAGATAACCCGTTGATAAGGCT 59.032 43.478 0.00 0.00 0.00 4.58
3816 4535 4.409247 AGAGATAACCCGTTGATAAGGCTT 59.591 41.667 4.58 4.58 0.00 4.35
3852 4632 9.971922 CTATCTTATCAATCACTGTACATGTCA 57.028 33.333 0.00 0.00 0.00 3.58
3903 4686 8.937207 TCTTCTTATCTGTAACTAGATACCCC 57.063 38.462 7.62 0.00 38.90 4.95
3904 4687 8.734763 TCTTCTTATCTGTAACTAGATACCCCT 58.265 37.037 7.62 0.00 38.90 4.79
3909 4692 9.804977 TTATCTGTAACTAGATACCCCTAAGAC 57.195 37.037 7.62 0.00 38.90 3.01
3910 4693 6.608922 TCTGTAACTAGATACCCCTAAGACC 58.391 44.000 7.62 0.00 0.00 3.85
3911 4694 6.160992 TCTGTAACTAGATACCCCTAAGACCA 59.839 42.308 7.62 0.00 0.00 4.02
3912 4695 6.744822 TGTAACTAGATACCCCTAAGACCAA 58.255 40.000 7.62 0.00 0.00 3.67
3913 4696 6.608808 TGTAACTAGATACCCCTAAGACCAAC 59.391 42.308 7.62 0.00 0.00 3.77
3914 4697 5.484734 ACTAGATACCCCTAAGACCAACT 57.515 43.478 0.00 0.00 0.00 3.16
3915 4698 5.851418 ACTAGATACCCCTAAGACCAACTT 58.149 41.667 0.00 0.00 42.04 2.66
3916 4699 5.898397 ACTAGATACCCCTAAGACCAACTTC 59.102 44.000 0.00 0.00 39.72 3.01
3917 4700 4.695606 AGATACCCCTAAGACCAACTTCA 58.304 43.478 0.00 0.00 39.72 3.02
3918 4701 5.098663 AGATACCCCTAAGACCAACTTCAA 58.901 41.667 0.00 0.00 39.72 2.69
3919 4702 5.731678 AGATACCCCTAAGACCAACTTCAAT 59.268 40.000 0.00 0.00 39.72 2.57
3920 4703 4.034285 ACCCCTAAGACCAACTTCAATG 57.966 45.455 0.00 0.00 39.72 2.82
3921 4704 3.245264 ACCCCTAAGACCAACTTCAATGG 60.245 47.826 0.00 0.00 43.84 3.16
3922 4705 3.356290 CCCTAAGACCAACTTCAATGGG 58.644 50.000 0.00 0.00 42.48 4.00
3923 4706 3.356290 CCTAAGACCAACTTCAATGGGG 58.644 50.000 0.00 0.00 42.48 4.96
3924 4707 1.632589 AAGACCAACTTCAATGGGGC 58.367 50.000 0.00 0.00 42.48 5.80
3925 4708 0.609131 AGACCAACTTCAATGGGGCG 60.609 55.000 0.00 0.00 42.48 6.13
3926 4709 0.608035 GACCAACTTCAATGGGGCGA 60.608 55.000 0.00 0.00 42.48 5.54
3927 4710 0.893727 ACCAACTTCAATGGGGCGAC 60.894 55.000 0.00 0.00 42.48 5.19
3978 4761 2.735857 CGTTTGGGTCGGACGTCC 60.736 66.667 25.28 25.28 32.52 4.79
3998 4781 4.675029 CCGACGTCCGCCCTGTTT 62.675 66.667 10.58 0.00 36.84 2.83
3999 4782 2.663852 CGACGTCCGCCCTGTTTT 60.664 61.111 10.58 0.00 0.00 2.43
4000 4783 1.373246 CGACGTCCGCCCTGTTTTA 60.373 57.895 10.58 0.00 0.00 1.52
4001 4784 1.349259 CGACGTCCGCCCTGTTTTAG 61.349 60.000 10.58 0.00 0.00 1.85
4002 4785 0.037975 GACGTCCGCCCTGTTTTAGA 60.038 55.000 3.51 0.00 0.00 2.10
4003 4786 0.611714 ACGTCCGCCCTGTTTTAGAT 59.388 50.000 0.00 0.00 0.00 1.98
4004 4787 1.826720 ACGTCCGCCCTGTTTTAGATA 59.173 47.619 0.00 0.00 0.00 1.98
4005 4788 2.433239 ACGTCCGCCCTGTTTTAGATAT 59.567 45.455 0.00 0.00 0.00 1.63
4006 4789 2.800544 CGTCCGCCCTGTTTTAGATATG 59.199 50.000 0.00 0.00 0.00 1.78
4007 4790 3.139077 GTCCGCCCTGTTTTAGATATGG 58.861 50.000 0.00 0.00 0.00 2.74
4008 4791 2.105821 TCCGCCCTGTTTTAGATATGGG 59.894 50.000 0.00 0.00 37.76 4.00
4009 4792 2.158667 CCGCCCTGTTTTAGATATGGGT 60.159 50.000 0.00 0.00 37.09 4.51
4010 4793 3.139077 CGCCCTGTTTTAGATATGGGTC 58.861 50.000 0.00 0.00 37.09 4.46
4011 4794 3.433031 CGCCCTGTTTTAGATATGGGTCA 60.433 47.826 0.00 0.00 37.09 4.02
4012 4795 4.137543 GCCCTGTTTTAGATATGGGTCAG 58.862 47.826 0.00 0.00 37.09 3.51
4013 4796 4.385310 GCCCTGTTTTAGATATGGGTCAGT 60.385 45.833 0.00 0.00 37.09 3.41
4014 4797 5.163237 GCCCTGTTTTAGATATGGGTCAGTA 60.163 44.000 0.00 0.00 37.09 2.74
4015 4798 6.525629 CCCTGTTTTAGATATGGGTCAGTAG 58.474 44.000 0.00 0.00 0.00 2.57
4016 4799 5.992217 CCTGTTTTAGATATGGGTCAGTAGC 59.008 44.000 0.00 0.00 0.00 3.58
4017 4800 5.597806 TGTTTTAGATATGGGTCAGTAGCG 58.402 41.667 0.00 0.00 0.00 4.26
4018 4801 3.936372 TTAGATATGGGTCAGTAGCGC 57.064 47.619 0.00 0.00 0.00 5.92
4019 4802 1.704641 AGATATGGGTCAGTAGCGCA 58.295 50.000 11.47 0.00 0.00 6.09
4020 4803 1.341531 AGATATGGGTCAGTAGCGCAC 59.658 52.381 11.47 5.97 0.00 5.34
4021 4804 1.341531 GATATGGGTCAGTAGCGCACT 59.658 52.381 11.47 8.55 38.32 4.40
4022 4805 0.744874 TATGGGTCAGTAGCGCACTC 59.255 55.000 11.47 0.00 34.26 3.51
4023 4806 1.257750 ATGGGTCAGTAGCGCACTCA 61.258 55.000 11.47 4.68 34.26 3.41
4024 4807 1.292223 GGGTCAGTAGCGCACTCAA 59.708 57.895 11.47 0.00 34.26 3.02
4025 4808 0.108138 GGGTCAGTAGCGCACTCAAT 60.108 55.000 11.47 0.00 34.26 2.57
4026 4809 1.002366 GGTCAGTAGCGCACTCAATG 58.998 55.000 11.47 0.89 34.26 2.82
4027 4810 1.673033 GGTCAGTAGCGCACTCAATGT 60.673 52.381 11.47 0.00 34.26 2.71
4035 4818 3.578456 CACTCAATGTGCCGACCC 58.422 61.111 0.00 0.00 40.06 4.46
4036 4819 1.302431 CACTCAATGTGCCGACCCA 60.302 57.895 0.00 0.00 40.06 4.51
4037 4820 0.677731 CACTCAATGTGCCGACCCAT 60.678 55.000 0.00 0.00 40.06 4.00
4038 4821 0.677731 ACTCAATGTGCCGACCCATG 60.678 55.000 0.00 0.00 0.00 3.66
4039 4822 0.677731 CTCAATGTGCCGACCCATGT 60.678 55.000 0.00 0.00 0.00 3.21
4040 4823 0.959867 TCAATGTGCCGACCCATGTG 60.960 55.000 0.00 0.00 0.00 3.21
4041 4824 1.074775 AATGTGCCGACCCATGTGT 59.925 52.632 0.00 0.00 0.00 3.72
4042 4825 1.243342 AATGTGCCGACCCATGTGTG 61.243 55.000 0.00 0.00 0.00 3.82
4043 4826 3.737172 GTGCCGACCCATGTGTGC 61.737 66.667 0.00 0.00 0.00 4.57
4052 4835 4.088762 CATGTGTGCCGGCGTGAC 62.089 66.667 23.90 18.05 0.00 3.67
4067 4850 3.766691 GACGAGTTGGCCGCCCTA 61.767 66.667 7.03 0.00 0.00 3.53
4068 4851 3.081409 ACGAGTTGGCCGCCCTAT 61.081 61.111 7.03 0.00 0.00 2.57
4069 4852 2.280186 CGAGTTGGCCGCCCTATC 60.280 66.667 7.03 0.79 0.00 2.08
4070 4853 2.797278 CGAGTTGGCCGCCCTATCT 61.797 63.158 7.03 0.00 0.00 1.98
4071 4854 1.461091 CGAGTTGGCCGCCCTATCTA 61.461 60.000 7.03 0.00 0.00 1.98
4072 4855 0.977395 GAGTTGGCCGCCCTATCTAT 59.023 55.000 7.03 0.00 0.00 1.98
4073 4856 2.176889 GAGTTGGCCGCCCTATCTATA 58.823 52.381 7.03 0.00 0.00 1.31
4074 4857 1.900486 AGTTGGCCGCCCTATCTATAC 59.100 52.381 7.03 0.00 0.00 1.47
4075 4858 1.066358 GTTGGCCGCCCTATCTATACC 60.066 57.143 7.03 0.00 0.00 2.73
4076 4859 0.115547 TGGCCGCCCTATCTATACCA 59.884 55.000 7.03 0.00 0.00 3.25
4077 4860 1.272807 GGCCGCCCTATCTATACCAA 58.727 55.000 0.00 0.00 0.00 3.67
4078 4861 1.838077 GGCCGCCCTATCTATACCAAT 59.162 52.381 0.00 0.00 0.00 3.16
4079 4862 3.036091 GGCCGCCCTATCTATACCAATA 58.964 50.000 0.00 0.00 0.00 1.90
4080 4863 3.646637 GGCCGCCCTATCTATACCAATAT 59.353 47.826 0.00 0.00 0.00 1.28
4081 4864 4.836736 GGCCGCCCTATCTATACCAATATA 59.163 45.833 0.00 0.00 0.00 0.86
4082 4865 5.306160 GGCCGCCCTATCTATACCAATATAA 59.694 44.000 0.00 0.00 0.00 0.98
4083 4866 6.183361 GGCCGCCCTATCTATACCAATATAAA 60.183 42.308 0.00 0.00 0.00 1.40
4084 4867 7.277396 GCCGCCCTATCTATACCAATATAAAA 58.723 38.462 0.00 0.00 0.00 1.52
4085 4868 7.771826 GCCGCCCTATCTATACCAATATAAAAA 59.228 37.037 0.00 0.00 0.00 1.94
4086 4869 9.326413 CCGCCCTATCTATACCAATATAAAAAG 57.674 37.037 0.00 0.00 0.00 2.27
4108 4891 2.678471 CCAAATGGGCAGATCCAAAC 57.322 50.000 0.00 0.00 40.62 2.93
4109 4892 1.207811 CCAAATGGGCAGATCCAAACC 59.792 52.381 0.00 0.00 40.62 3.27
4110 4893 1.901159 CAAATGGGCAGATCCAAACCA 59.099 47.619 0.00 0.00 40.62 3.67
4111 4894 2.502538 CAAATGGGCAGATCCAAACCAT 59.497 45.455 3.70 3.70 43.39 3.55
4112 4895 2.077687 ATGGGCAGATCCAAACCATC 57.922 50.000 3.70 0.00 37.35 3.51
4113 4896 1.002069 TGGGCAGATCCAAACCATCT 58.998 50.000 0.00 0.00 36.21 2.90
4114 4897 1.064463 TGGGCAGATCCAAACCATCTC 60.064 52.381 0.00 0.00 36.21 2.75
4115 4898 1.064463 GGGCAGATCCAAACCATCTCA 60.064 52.381 0.00 0.00 36.21 3.27
4116 4899 2.621407 GGGCAGATCCAAACCATCTCAA 60.621 50.000 0.00 0.00 36.21 3.02
4117 4900 2.424956 GGCAGATCCAAACCATCTCAAC 59.575 50.000 0.00 0.00 34.01 3.18
4118 4901 2.424956 GCAGATCCAAACCATCTCAACC 59.575 50.000 0.00 0.00 0.00 3.77
4119 4902 2.679837 CAGATCCAAACCATCTCAACCG 59.320 50.000 0.00 0.00 0.00 4.44
4120 4903 2.305927 AGATCCAAACCATCTCAACCGT 59.694 45.455 0.00 0.00 0.00 4.83
4121 4904 2.178912 TCCAAACCATCTCAACCGTC 57.821 50.000 0.00 0.00 0.00 4.79
4122 4905 1.418264 TCCAAACCATCTCAACCGTCA 59.582 47.619 0.00 0.00 0.00 4.35
4123 4906 2.158740 TCCAAACCATCTCAACCGTCAA 60.159 45.455 0.00 0.00 0.00 3.18
4124 4907 2.621055 CCAAACCATCTCAACCGTCAAA 59.379 45.455 0.00 0.00 0.00 2.69
4125 4908 3.255642 CCAAACCATCTCAACCGTCAAAT 59.744 43.478 0.00 0.00 0.00 2.32
4126 4909 4.475944 CAAACCATCTCAACCGTCAAATC 58.524 43.478 0.00 0.00 0.00 2.17
4127 4910 3.417069 ACCATCTCAACCGTCAAATCA 57.583 42.857 0.00 0.00 0.00 2.57
4128 4911 3.955471 ACCATCTCAACCGTCAAATCAT 58.045 40.909 0.00 0.00 0.00 2.45
4129 4912 4.335416 ACCATCTCAACCGTCAAATCATT 58.665 39.130 0.00 0.00 0.00 2.57
4130 4913 4.766891 ACCATCTCAACCGTCAAATCATTT 59.233 37.500 0.00 0.00 0.00 2.32
4131 4914 5.243730 ACCATCTCAACCGTCAAATCATTTT 59.756 36.000 0.00 0.00 0.00 1.82
4132 4915 6.432783 ACCATCTCAACCGTCAAATCATTTTA 59.567 34.615 0.00 0.00 0.00 1.52
4133 4916 7.122650 ACCATCTCAACCGTCAAATCATTTTAT 59.877 33.333 0.00 0.00 0.00 1.40
4134 4917 7.645340 CCATCTCAACCGTCAAATCATTTTATC 59.355 37.037 0.00 0.00 0.00 1.75
4135 4918 7.921786 TCTCAACCGTCAAATCATTTTATCT 57.078 32.000 0.00 0.00 0.00 1.98
4136 4919 9.613428 ATCTCAACCGTCAAATCATTTTATCTA 57.387 29.630 0.00 0.00 0.00 1.98
4137 4920 9.098355 TCTCAACCGTCAAATCATTTTATCTAG 57.902 33.333 0.00 0.00 0.00 2.43
4138 4921 7.693952 TCAACCGTCAAATCATTTTATCTAGC 58.306 34.615 0.00 0.00 0.00 3.42
4139 4922 6.287107 ACCGTCAAATCATTTTATCTAGCG 57.713 37.500 0.00 0.00 0.00 4.26
4140 4923 5.236478 ACCGTCAAATCATTTTATCTAGCGG 59.764 40.000 0.00 0.00 38.92 5.52
4141 4924 5.236478 CCGTCAAATCATTTTATCTAGCGGT 59.764 40.000 0.00 0.00 0.00 5.68
4142 4925 6.238374 CCGTCAAATCATTTTATCTAGCGGTT 60.238 38.462 0.00 0.00 0.00 4.44
4143 4926 7.186804 CGTCAAATCATTTTATCTAGCGGTTT 58.813 34.615 0.00 0.00 0.00 3.27
4144 4927 8.332464 CGTCAAATCATTTTATCTAGCGGTTTA 58.668 33.333 0.00 0.00 0.00 2.01
4145 4928 9.997482 GTCAAATCATTTTATCTAGCGGTTTAA 57.003 29.630 0.00 0.00 0.00 1.52
4149 4932 9.878599 AATCATTTTATCTAGCGGTTTAAATCG 57.121 29.630 16.49 16.49 35.16 3.34
4162 4945 7.594824 CGGTTTAAATCGCTTCAATATTGAG 57.405 36.000 17.28 12.75 38.61 3.02
4163 4946 6.140737 CGGTTTAAATCGCTTCAATATTGAGC 59.859 38.462 17.28 19.37 38.61 4.26
4164 4947 6.972328 GGTTTAAATCGCTTCAATATTGAGCA 59.028 34.615 25.76 18.16 38.61 4.26
4165 4948 7.044052 GGTTTAAATCGCTTCAATATTGAGCAC 60.044 37.037 25.76 18.43 38.61 4.40
4166 4949 4.558538 AATCGCTTCAATATTGAGCACC 57.441 40.909 25.76 14.10 38.61 5.01
4167 4950 2.984562 TCGCTTCAATATTGAGCACCA 58.015 42.857 25.76 11.56 38.61 4.17
4168 4951 3.342719 TCGCTTCAATATTGAGCACCAA 58.657 40.909 25.76 11.02 38.61 3.67
4169 4952 3.755905 TCGCTTCAATATTGAGCACCAAA 59.244 39.130 25.76 10.48 38.61 3.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 9.775854 AGTGAATCCAATCAGATTATCTGTAAG 57.224 33.333 20.09 11.40 44.58 2.34
122 142 3.823304 GCAGGTGGTTCTTCTTTTGATCT 59.177 43.478 0.00 0.00 0.00 2.75
149 169 2.645838 TGAGCAAGAAGAACAAGGCT 57.354 45.000 0.00 0.00 0.00 4.58
212 244 1.226435 CAGCACGAGTAGCGAGGAC 60.226 63.158 0.00 0.00 44.57 3.85
224 259 1.739562 GGGAGACAAGAGCAGCACG 60.740 63.158 0.00 0.00 0.00 5.34
226 261 0.543883 AGAGGGAGACAAGAGCAGCA 60.544 55.000 0.00 0.00 0.00 4.41
240 275 1.681486 GCCGAGGAGAAGGAAGAGGG 61.681 65.000 0.00 0.00 0.00 4.30
242 277 1.316706 ACGCCGAGGAGAAGGAAGAG 61.317 60.000 0.00 0.00 0.00 2.85
563 634 1.151668 CTTCGAACCCTCTTGCACTG 58.848 55.000 0.00 0.00 0.00 3.66
566 637 1.667830 CGCTTCGAACCCTCTTGCA 60.668 57.895 0.00 0.00 0.00 4.08
591 662 1.958205 ACCTCGTCTCGTCGTCGTT 60.958 57.895 1.33 0.00 38.33 3.85
629 700 3.449227 CAGGACGCCGTGCTCCTA 61.449 66.667 8.76 0.00 35.55 2.94
753 826 2.755655 CCCAGTGGACTGTAGTCTGTAG 59.244 54.545 11.95 1.35 44.20 2.74
754 827 2.109480 ACCCAGTGGACTGTAGTCTGTA 59.891 50.000 11.95 0.00 44.20 2.74
755 828 1.133136 ACCCAGTGGACTGTAGTCTGT 60.133 52.381 11.95 0.00 44.20 3.41
756 829 1.633774 ACCCAGTGGACTGTAGTCTG 58.366 55.000 11.95 2.99 44.20 3.51
757 830 2.158295 AGAACCCAGTGGACTGTAGTCT 60.158 50.000 11.95 0.00 44.20 3.24
758 831 2.028930 CAGAACCCAGTGGACTGTAGTC 60.029 54.545 11.95 3.43 42.27 2.59
759 832 1.971357 CAGAACCCAGTGGACTGTAGT 59.029 52.381 11.95 0.00 42.27 2.73
788 861 2.934553 GTTCGCCCTAGTCACCAAATAC 59.065 50.000 0.00 0.00 0.00 1.89
789 862 2.417651 CGTTCGCCCTAGTCACCAAATA 60.418 50.000 0.00 0.00 0.00 1.40
790 863 1.674817 CGTTCGCCCTAGTCACCAAAT 60.675 52.381 0.00 0.00 0.00 2.32
815 888 0.320697 AGACGGACTGGGCTTTACAC 59.679 55.000 0.00 0.00 0.00 2.90
834 907 2.043248 GGCCTAGACTGGGACGGA 60.043 66.667 9.44 0.00 38.67 4.69
836 909 1.749334 GATGGGCCTAGACTGGGACG 61.749 65.000 9.44 0.00 31.27 4.79
837 910 1.411651 GGATGGGCCTAGACTGGGAC 61.412 65.000 9.44 5.39 0.00 4.46
840 913 1.143813 AATGGATGGGCCTAGACTGG 58.856 55.000 4.53 0.00 37.63 4.00
841 914 2.975489 ACTAATGGATGGGCCTAGACTG 59.025 50.000 4.53 0.00 37.63 3.51
842 915 2.975489 CACTAATGGATGGGCCTAGACT 59.025 50.000 4.53 0.00 37.63 3.24
843 916 2.972713 TCACTAATGGATGGGCCTAGAC 59.027 50.000 4.53 0.00 37.63 2.59
844 917 3.344535 TCACTAATGGATGGGCCTAGA 57.655 47.619 4.53 0.00 37.63 2.43
845 918 3.584406 TGATCACTAATGGATGGGCCTAG 59.416 47.826 4.53 0.00 37.63 3.02
846 919 3.597182 TGATCACTAATGGATGGGCCTA 58.403 45.455 4.53 0.00 37.63 3.93
847 920 2.421725 TGATCACTAATGGATGGGCCT 58.578 47.619 4.53 0.00 37.63 5.19
848 921 2.957402 TGATCACTAATGGATGGGCC 57.043 50.000 0.00 0.00 37.10 5.80
914 988 4.517832 GGTGGGGATGAATACGGTTAATTC 59.482 45.833 0.00 0.00 34.55 2.17
929 1003 1.288037 GGGAAGCTTAAAGGTGGGGAT 59.712 52.381 0.00 0.00 0.00 3.85
1322 1396 4.193334 CGCAGTCGATCGCCCAGA 62.193 66.667 11.09 0.00 38.10 3.86
1407 1481 2.263540 GTAAGAACGGCGGGCTCA 59.736 61.111 13.24 0.00 0.00 4.26
1628 1787 0.964358 GGAGCAACCATTCTGCAGCT 60.964 55.000 9.47 0.00 42.48 4.24
1640 1799 6.418226 CGTACTAATCAGTAAGATGGAGCAAC 59.582 42.308 0.00 0.00 38.98 4.17
1641 1800 6.320418 TCGTACTAATCAGTAAGATGGAGCAA 59.680 38.462 0.00 0.00 39.76 3.91
1642 1801 5.826208 TCGTACTAATCAGTAAGATGGAGCA 59.174 40.000 0.00 0.00 39.76 4.26
1643 1802 6.144175 GTCGTACTAATCAGTAAGATGGAGC 58.856 44.000 0.00 0.00 44.21 4.70
1644 1803 6.487331 AGGTCGTACTAATCAGTAAGATGGAG 59.513 42.308 0.00 0.00 44.21 3.86
1645 1804 6.363065 AGGTCGTACTAATCAGTAAGATGGA 58.637 40.000 0.00 0.00 44.21 3.41
1646 1805 6.636562 AGGTCGTACTAATCAGTAAGATGG 57.363 41.667 0.00 0.00 44.21 3.51
1647 1806 8.151141 TGTAGGTCGTACTAATCAGTAAGATG 57.849 38.462 0.00 0.00 44.21 2.90
1648 1807 8.743085 TTGTAGGTCGTACTAATCAGTAAGAT 57.257 34.615 0.00 0.00 44.21 2.40
1649 1808 7.281774 CCTTGTAGGTCGTACTAATCAGTAAGA 59.718 40.741 4.45 0.00 41.56 2.10
1650 1809 7.416022 CCTTGTAGGTCGTACTAATCAGTAAG 58.584 42.308 4.45 0.00 38.98 2.34
1651 1810 6.319658 CCCTTGTAGGTCGTACTAATCAGTAA 59.680 42.308 4.45 0.00 34.65 2.24
1652 1811 5.824624 CCCTTGTAGGTCGTACTAATCAGTA 59.175 44.000 4.45 0.00 32.80 2.74
1653 1812 4.643784 CCCTTGTAGGTCGTACTAATCAGT 59.356 45.833 4.45 0.00 34.37 3.41
1654 1813 4.885907 TCCCTTGTAGGTCGTACTAATCAG 59.114 45.833 4.45 0.00 31.93 2.90
1655 1814 4.858850 TCCCTTGTAGGTCGTACTAATCA 58.141 43.478 4.45 0.00 31.93 2.57
1656 1815 5.301298 ACATCCCTTGTAGGTCGTACTAATC 59.699 44.000 4.45 0.00 36.57 1.75
1657 1816 5.206587 ACATCCCTTGTAGGTCGTACTAAT 58.793 41.667 4.45 0.00 36.57 1.73
1658 1817 4.603131 ACATCCCTTGTAGGTCGTACTAA 58.397 43.478 4.45 0.00 36.57 2.24
1659 1818 4.240881 ACATCCCTTGTAGGTCGTACTA 57.759 45.455 4.45 0.00 36.57 1.82
1660 1819 3.097342 ACATCCCTTGTAGGTCGTACT 57.903 47.619 4.45 0.00 36.57 2.73
1661 1820 4.826183 AGATACATCCCTTGTAGGTCGTAC 59.174 45.833 0.00 0.00 43.87 3.67
1662 1821 5.057843 AGATACATCCCTTGTAGGTCGTA 57.942 43.478 0.00 0.00 43.87 3.43
1663 1822 3.912248 AGATACATCCCTTGTAGGTCGT 58.088 45.455 0.00 0.00 43.87 4.34
1664 1823 4.939052 AAGATACATCCCTTGTAGGTCG 57.061 45.455 0.00 0.00 43.87 4.79
1665 1824 4.816925 GCAAAGATACATCCCTTGTAGGTC 59.183 45.833 0.00 0.00 43.87 3.85
1666 1825 4.475016 AGCAAAGATACATCCCTTGTAGGT 59.525 41.667 0.00 0.00 43.87 3.08
1667 1826 5.041191 AGCAAAGATACATCCCTTGTAGG 57.959 43.478 0.00 0.00 43.87 3.18
1668 1827 9.376075 CATATAGCAAAGATACATCCCTTGTAG 57.624 37.037 0.00 0.00 43.87 2.74
1669 1828 9.100197 TCATATAGCAAAGATACATCCCTTGTA 57.900 33.333 0.00 0.00 44.71 2.41
1670 1829 7.977818 TCATATAGCAAAGATACATCCCTTGT 58.022 34.615 0.00 0.00 42.62 3.16
1671 1830 8.725148 GTTCATATAGCAAAGATACATCCCTTG 58.275 37.037 0.00 0.00 0.00 3.61
1672 1831 8.439971 TGTTCATATAGCAAAGATACATCCCTT 58.560 33.333 0.00 0.00 0.00 3.95
1673 1832 7.977818 TGTTCATATAGCAAAGATACATCCCT 58.022 34.615 0.00 0.00 0.00 4.20
1674 1833 8.621532 TTGTTCATATAGCAAAGATACATCCC 57.378 34.615 0.00 0.00 0.00 3.85
1679 1838 9.669353 CCACAATTGTTCATATAGCAAAGATAC 57.331 33.333 8.77 0.00 31.56 2.24
1680 1839 8.352201 GCCACAATTGTTCATATAGCAAAGATA 58.648 33.333 8.77 0.00 31.56 1.98
1681 1840 7.147863 TGCCACAATTGTTCATATAGCAAAGAT 60.148 33.333 8.77 0.00 31.56 2.40
1682 1841 6.152492 TGCCACAATTGTTCATATAGCAAAGA 59.848 34.615 8.77 0.00 31.56 2.52
1683 1842 6.331845 TGCCACAATTGTTCATATAGCAAAG 58.668 36.000 8.77 0.00 31.56 2.77
1684 1843 6.278172 TGCCACAATTGTTCATATAGCAAA 57.722 33.333 8.77 0.00 31.56 3.68
1685 1844 5.911378 TGCCACAATTGTTCATATAGCAA 57.089 34.783 8.77 0.00 32.41 3.91
1686 1845 5.184671 TGTTGCCACAATTGTTCATATAGCA 59.815 36.000 8.77 6.78 0.00 3.49
1687 1846 5.649557 TGTTGCCACAATTGTTCATATAGC 58.350 37.500 8.77 4.30 0.00 2.97
1688 1847 8.531622 TTTTGTTGCCACAATTGTTCATATAG 57.468 30.769 8.77 0.00 42.66 1.31
1689 1848 8.893219 TTTTTGTTGCCACAATTGTTCATATA 57.107 26.923 8.77 0.00 42.66 0.86
1690 1849 7.041235 CCTTTTTGTTGCCACAATTGTTCATAT 60.041 33.333 8.77 0.00 42.66 1.78
1691 1850 6.259608 CCTTTTTGTTGCCACAATTGTTCATA 59.740 34.615 8.77 0.49 42.66 2.15
1692 1851 5.066246 CCTTTTTGTTGCCACAATTGTTCAT 59.934 36.000 8.77 0.00 42.66 2.57
1693 1852 4.394300 CCTTTTTGTTGCCACAATTGTTCA 59.606 37.500 8.77 7.27 42.66 3.18
1694 1853 4.201901 CCCTTTTTGTTGCCACAATTGTTC 60.202 41.667 8.77 4.50 42.66 3.18
1695 1854 3.693578 CCCTTTTTGTTGCCACAATTGTT 59.306 39.130 8.77 0.00 42.66 2.83
1696 1855 3.277715 CCCTTTTTGTTGCCACAATTGT 58.722 40.909 4.92 4.92 42.66 2.71
1697 1856 3.277715 ACCCTTTTTGTTGCCACAATTG 58.722 40.909 3.93 3.24 42.66 2.32
1698 1857 3.540617 GACCCTTTTTGTTGCCACAATT 58.459 40.909 3.93 0.00 42.66 2.32
1699 1858 2.158827 GGACCCTTTTTGTTGCCACAAT 60.159 45.455 3.93 0.00 42.66 2.71
1700 1859 1.208293 GGACCCTTTTTGTTGCCACAA 59.792 47.619 0.00 0.00 41.39 3.33
1701 1860 0.827368 GGACCCTTTTTGTTGCCACA 59.173 50.000 0.00 0.00 0.00 4.17
1702 1861 1.119684 AGGACCCTTTTTGTTGCCAC 58.880 50.000 0.00 0.00 0.00 5.01
1703 1862 2.757894 TAGGACCCTTTTTGTTGCCA 57.242 45.000 0.00 0.00 0.00 4.92
1704 1863 5.731957 TTATTAGGACCCTTTTTGTTGCC 57.268 39.130 0.00 0.00 0.00 4.52
1705 1864 6.697395 ACATTATTAGGACCCTTTTTGTTGC 58.303 36.000 0.00 0.00 0.00 4.17
1706 1865 9.020731 ACTACATTATTAGGACCCTTTTTGTTG 57.979 33.333 0.00 0.00 0.00 3.33
1713 1872 9.333961 TGCATATACTACATTATTAGGACCCTT 57.666 33.333 0.00 0.00 0.00 3.95
1714 1873 8.759782 GTGCATATACTACATTATTAGGACCCT 58.240 37.037 0.00 0.00 0.00 4.34
1715 1874 8.537016 TGTGCATATACTACATTATTAGGACCC 58.463 37.037 0.00 0.00 0.00 4.46
1716 1875 9.938280 TTGTGCATATACTACATTATTAGGACC 57.062 33.333 0.00 0.00 0.00 4.46
1718 1877 9.653287 GCTTGTGCATATACTACATTATTAGGA 57.347 33.333 0.00 0.00 39.41 2.94
1719 1878 9.658799 AGCTTGTGCATATACTACATTATTAGG 57.341 33.333 0.00 0.00 42.74 2.69
1738 1897 3.102515 GCACATTCTGCAGCTTGTG 57.897 52.632 29.59 29.59 46.29 3.33
1746 1905 3.253188 TCAAACAAGTAGGCACATTCTGC 59.747 43.478 0.00 0.00 46.31 4.26
1747 1906 5.009010 AGTTCAAACAAGTAGGCACATTCTG 59.991 40.000 0.00 0.00 0.00 3.02
1748 1907 5.133221 AGTTCAAACAAGTAGGCACATTCT 58.867 37.500 0.00 0.00 0.00 2.40
1749 1908 5.438761 AGTTCAAACAAGTAGGCACATTC 57.561 39.130 0.00 0.00 0.00 2.67
1750 1909 6.714810 TCATAGTTCAAACAAGTAGGCACATT 59.285 34.615 0.00 0.00 0.00 2.71
1751 1910 6.237901 TCATAGTTCAAACAAGTAGGCACAT 58.762 36.000 0.00 0.00 0.00 3.21
1774 1933 0.465097 CCTGTCATCTGGTGCCCATC 60.465 60.000 0.00 0.00 30.82 3.51
1775 1934 1.611419 CCTGTCATCTGGTGCCCAT 59.389 57.895 0.00 0.00 30.82 4.00
1776 1935 3.080641 CCTGTCATCTGGTGCCCA 58.919 61.111 0.00 0.00 0.00 5.36
1777 1936 2.439156 GCCTGTCATCTGGTGCCC 60.439 66.667 0.00 0.00 35.49 5.36
1781 1941 1.180029 GCATTTGCCTGTCATCTGGT 58.820 50.000 0.00 0.00 35.49 4.00
1786 1946 2.502142 TCAGAGCATTTGCCTGTCAT 57.498 45.000 15.77 0.00 43.38 3.06
1816 1976 2.771943 ACTGGAAGAGAAGTCCACACAA 59.228 45.455 0.00 0.00 40.33 3.33
1864 2095 5.880054 ACGAGCAAAGCAGTTACAATAAT 57.120 34.783 0.00 0.00 0.00 1.28
1989 2222 1.066358 CGGAAAGTTACAGGGAGGGTC 60.066 57.143 0.00 0.00 0.00 4.46
1990 2223 0.981943 CGGAAAGTTACAGGGAGGGT 59.018 55.000 0.00 0.00 0.00 4.34
2008 2241 6.721571 ACCAGTCATAATCAGTTAACAACG 57.278 37.500 8.61 0.00 36.23 4.10
2340 2735 6.163476 TCTTACTACATAATATGCCGCTTGG 58.837 40.000 0.00 0.00 0.00 3.61
2415 2810 5.220586 CCGCTTGGTAATATGCGTATTATGG 60.221 44.000 18.91 11.42 45.90 2.74
2417 2812 4.331717 GCCGCTTGGTAATATGCGTATTAT 59.668 41.667 18.91 0.00 45.90 1.28
2418 2813 3.680937 GCCGCTTGGTAATATGCGTATTA 59.319 43.478 13.32 13.32 45.90 0.98
2419 2814 2.482721 GCCGCTTGGTAATATGCGTATT 59.517 45.455 15.30 15.30 45.90 1.89
2420 2815 2.073816 GCCGCTTGGTAATATGCGTAT 58.926 47.619 0.00 0.00 45.90 3.06
2421 2816 1.202545 TGCCGCTTGGTAATATGCGTA 60.203 47.619 0.00 0.00 45.90 4.42
2422 2817 0.462937 TGCCGCTTGGTAATATGCGT 60.463 50.000 0.00 0.00 45.90 5.24
2423 2818 0.874390 ATGCCGCTTGGTAATATGCG 59.126 50.000 0.00 0.00 46.74 4.73
2424 2819 4.082787 ACATTATGCCGCTTGGTAATATGC 60.083 41.667 0.00 0.00 30.51 3.14
2425 2820 5.393124 CACATTATGCCGCTTGGTAATATG 58.607 41.667 0.00 0.00 32.34 1.78
2426 2821 5.627499 CACATTATGCCGCTTGGTAATAT 57.373 39.130 0.00 0.00 34.16 1.28
2428 2823 3.988379 CACATTATGCCGCTTGGTAAT 57.012 42.857 0.00 0.00 34.16 1.89
2440 2835 2.734755 TGAAGAGGGGGCACATTATG 57.265 50.000 0.00 0.00 0.00 1.90
2441 2836 3.756082 TTTGAAGAGGGGGCACATTAT 57.244 42.857 0.00 0.00 0.00 1.28
2442 2837 3.534357 TTTTGAAGAGGGGGCACATTA 57.466 42.857 0.00 0.00 0.00 1.90
2443 2838 2.397044 TTTTGAAGAGGGGGCACATT 57.603 45.000 0.00 0.00 0.00 2.71
2523 2918 6.040842 ACATGAGTCTGGTTGCAAAGTAAATT 59.959 34.615 0.00 0.00 0.00 1.82
2527 2922 4.065088 GACATGAGTCTGGTTGCAAAGTA 58.935 43.478 0.00 0.00 41.64 2.24
2717 3141 8.242053 ACAAGATTATCTGAAACAGCAAGATTG 58.758 33.333 0.00 0.00 0.00 2.67
2760 3184 2.665165 AGCAACAATTTCCCACTGTCA 58.335 42.857 0.00 0.00 0.00 3.58
2797 3222 9.765166 GTCAGTAATAGACACGGCATCAAATGC 62.765 44.444 3.31 3.31 44.04 3.56
2831 3256 1.883275 TGTGACAAAGCAAATACCCCG 59.117 47.619 0.00 0.00 0.00 5.73
2940 3365 4.118410 GTCTTCATCACACATAGCCTGAG 58.882 47.826 0.00 0.00 0.00 3.35
2941 3366 3.429410 CGTCTTCATCACACATAGCCTGA 60.429 47.826 0.00 0.00 0.00 3.86
3076 3501 0.321122 CTCCAACACAGACTCCCAGC 60.321 60.000 0.00 0.00 0.00 4.85
3234 3666 1.743995 ATACGGCGGTTGGTTCAGC 60.744 57.895 13.24 0.00 0.00 4.26
3235 3667 0.672401 ACATACGGCGGTTGGTTCAG 60.672 55.000 13.24 0.00 0.00 3.02
3297 3729 4.576463 AGCTACACAAGTCAAAAACTCCAG 59.424 41.667 0.00 0.00 37.17 3.86
3326 3758 7.044181 CACCTTCACAGATTACATACACAGAT 58.956 38.462 0.00 0.00 0.00 2.90
3385 3817 4.019312 TGCGTCTGCTCCATGCCA 62.019 61.111 0.00 0.00 43.34 4.92
3398 3830 1.269448 CAAAATAAGGCCACAGTGCGT 59.731 47.619 5.01 0.00 0.00 5.24
3421 3853 4.392940 ACTTGTAGCACAATTCTGAAGCT 58.607 39.130 7.01 7.01 37.48 3.74
3439 3871 7.635973 CGCACTTGTATACACATTATTGACTTG 59.364 37.037 4.68 0.00 33.76 3.16
3513 3945 8.414003 CCTACTACTATCATGTGCTTCTAAACA 58.586 37.037 0.00 0.00 0.00 2.83
3535 3967 4.861462 GCCTAACGAACAGTCTTTACCTAC 59.139 45.833 0.00 0.00 0.00 3.18
3537 3969 3.322828 TGCCTAACGAACAGTCTTTACCT 59.677 43.478 0.00 0.00 0.00 3.08
3546 3981 3.131396 AGACAAGTTGCCTAACGAACAG 58.869 45.455 1.81 0.00 41.71 3.16
3567 4002 3.686622 GGCAGAACGGCTCATCATA 57.313 52.632 0.00 0.00 37.17 2.15
3586 4021 5.873712 ACACATTGACAATTTTGTTCTGCAA 59.126 32.000 0.00 0.00 42.43 4.08
3628 4064 2.562738 AGCATTCTTTTCCCCCTTTTCG 59.437 45.455 0.00 0.00 0.00 3.46
3683 4391 7.442656 TCTTACGATTTCTCTCTTTGACCTTT 58.557 34.615 0.00 0.00 0.00 3.11
3689 4397 9.587461 GACTTTTTCTTACGATTTCTCTCTTTG 57.413 33.333 0.00 0.00 0.00 2.77
3690 4398 9.549078 AGACTTTTTCTTACGATTTCTCTCTTT 57.451 29.630 0.00 0.00 0.00 2.52
3724 4443 8.928448 AGACAATTTATGCTAAGAGATGACCTA 58.072 33.333 0.00 0.00 0.00 3.08
3727 4446 8.547069 GTGAGACAATTTATGCTAAGAGATGAC 58.453 37.037 0.00 0.00 0.00 3.06
3729 4448 7.041508 GGGTGAGACAATTTATGCTAAGAGATG 60.042 40.741 0.00 0.00 0.00 2.90
3741 4460 6.208599 CCTAAAAGCTTGGGTGAGACAATTTA 59.791 38.462 0.00 0.00 0.00 1.40
3744 4463 4.082125 CCTAAAAGCTTGGGTGAGACAAT 58.918 43.478 0.00 0.00 0.00 2.71
3780 4499 6.326843 ACGGGTTATCTCTTAGCCTTATCTTT 59.673 38.462 0.00 0.00 32.03 2.52
3789 4508 5.927115 CCTTATCAACGGGTTATCTCTTAGC 59.073 44.000 0.00 0.00 0.00 3.09
3897 4680 5.340027 CCATTGAAGTTGGTCTTAGGGGTAT 60.340 44.000 0.00 0.00 36.40 2.73
3898 4681 4.018779 CCATTGAAGTTGGTCTTAGGGGTA 60.019 45.833 0.00 0.00 36.40 3.69
3899 4682 3.245264 CCATTGAAGTTGGTCTTAGGGGT 60.245 47.826 0.00 0.00 36.40 4.95
3903 4686 2.755103 GCCCCATTGAAGTTGGTCTTAG 59.245 50.000 0.00 0.00 36.40 2.18
3904 4687 2.802719 GCCCCATTGAAGTTGGTCTTA 58.197 47.619 0.00 0.00 36.40 2.10
3906 4689 0.609131 CGCCCCATTGAAGTTGGTCT 60.609 55.000 0.00 0.00 31.99 3.85
3907 4690 0.608035 TCGCCCCATTGAAGTTGGTC 60.608 55.000 0.00 0.00 31.99 4.02
3908 4691 0.893727 GTCGCCCCATTGAAGTTGGT 60.894 55.000 0.00 0.00 31.99 3.67
3909 4692 1.595093 GGTCGCCCCATTGAAGTTGG 61.595 60.000 0.00 0.00 0.00 3.77
3910 4693 1.883021 GGTCGCCCCATTGAAGTTG 59.117 57.895 0.00 0.00 0.00 3.16
3911 4694 4.415783 GGTCGCCCCATTGAAGTT 57.584 55.556 0.00 0.00 0.00 2.66
3922 4705 4.668118 TCGTCCGTTTGGGTCGCC 62.668 66.667 0.00 0.00 45.32 5.54
3923 4706 3.408851 GTCGTCCGTTTGGGTCGC 61.409 66.667 0.00 0.00 45.32 5.19
3924 4707 2.807631 ATCGTCGTCCGTTTGGGTCG 62.808 60.000 0.00 0.00 46.78 4.79
3925 4708 0.668401 AATCGTCGTCCGTTTGGGTC 60.668 55.000 0.00 0.00 37.94 4.46
3926 4709 0.249996 AAATCGTCGTCCGTTTGGGT 60.250 50.000 0.00 0.00 37.94 4.51
3927 4710 0.441145 GAAATCGTCGTCCGTTTGGG 59.559 55.000 0.00 0.00 37.94 4.12
3928 4711 0.092351 CGAAATCGTCGTCCGTTTGG 59.908 55.000 0.00 0.00 45.09 3.28
3929 4712 3.538346 CGAAATCGTCGTCCGTTTG 57.462 52.632 0.00 0.00 45.09 2.93
3961 4744 2.735857 GGACGTCCGACCCAAACG 60.736 66.667 20.85 0.00 41.93 3.60
3981 4764 2.768503 TAAAACAGGGCGGACGTCGG 62.769 60.000 17.98 17.98 39.69 4.79
3982 4765 1.349259 CTAAAACAGGGCGGACGTCG 61.349 60.000 9.92 6.26 42.76 5.12
3983 4766 0.037975 TCTAAAACAGGGCGGACGTC 60.038 55.000 7.13 7.13 0.00 4.34
3984 4767 0.611714 ATCTAAAACAGGGCGGACGT 59.388 50.000 0.00 0.00 0.00 4.34
3985 4768 2.589798 TATCTAAAACAGGGCGGACG 57.410 50.000 0.00 0.00 0.00 4.79
3986 4769 3.139077 CCATATCTAAAACAGGGCGGAC 58.861 50.000 0.00 0.00 0.00 4.79
3987 4770 2.105821 CCCATATCTAAAACAGGGCGGA 59.894 50.000 0.00 0.00 0.00 5.54
3988 4771 2.158667 ACCCATATCTAAAACAGGGCGG 60.159 50.000 0.00 0.00 39.97 6.13
3989 4772 3.139077 GACCCATATCTAAAACAGGGCG 58.861 50.000 0.00 0.00 39.97 6.13
3990 4773 4.137543 CTGACCCATATCTAAAACAGGGC 58.862 47.826 0.00 0.00 39.97 5.19
3991 4774 5.373812 ACTGACCCATATCTAAAACAGGG 57.626 43.478 0.00 0.00 42.07 4.45
3992 4775 5.992217 GCTACTGACCCATATCTAAAACAGG 59.008 44.000 0.00 0.00 0.00 4.00
3993 4776 5.692204 CGCTACTGACCCATATCTAAAACAG 59.308 44.000 0.00 0.00 0.00 3.16
3994 4777 5.597806 CGCTACTGACCCATATCTAAAACA 58.402 41.667 0.00 0.00 0.00 2.83
3995 4778 4.448060 GCGCTACTGACCCATATCTAAAAC 59.552 45.833 0.00 0.00 0.00 2.43
3996 4779 4.100344 TGCGCTACTGACCCATATCTAAAA 59.900 41.667 9.73 0.00 0.00 1.52
3997 4780 3.639561 TGCGCTACTGACCCATATCTAAA 59.360 43.478 9.73 0.00 0.00 1.85
3998 4781 3.005472 GTGCGCTACTGACCCATATCTAA 59.995 47.826 9.73 0.00 0.00 2.10
3999 4782 2.557056 GTGCGCTACTGACCCATATCTA 59.443 50.000 9.73 0.00 0.00 1.98
4000 4783 1.341531 GTGCGCTACTGACCCATATCT 59.658 52.381 9.73 0.00 0.00 1.98
4001 4784 1.341531 AGTGCGCTACTGACCCATATC 59.658 52.381 9.73 0.00 38.49 1.63
4002 4785 1.341531 GAGTGCGCTACTGACCCATAT 59.658 52.381 15.61 0.00 40.53 1.78
4003 4786 0.744874 GAGTGCGCTACTGACCCATA 59.255 55.000 15.61 0.00 40.53 2.74
4004 4787 1.257750 TGAGTGCGCTACTGACCCAT 61.258 55.000 15.61 0.00 40.53 4.00
4005 4788 1.468506 TTGAGTGCGCTACTGACCCA 61.469 55.000 15.61 6.22 40.53 4.51
4006 4789 0.108138 ATTGAGTGCGCTACTGACCC 60.108 55.000 15.61 4.02 40.53 4.46
4007 4790 1.002366 CATTGAGTGCGCTACTGACC 58.998 55.000 15.61 4.32 40.53 4.02
4008 4791 1.391485 CACATTGAGTGCGCTACTGAC 59.609 52.381 15.61 1.98 42.15 3.51
4009 4792 1.713597 CACATTGAGTGCGCTACTGA 58.286 50.000 15.61 6.19 42.15 3.41
4019 4802 0.677731 CATGGGTCGGCACATTGAGT 60.678 55.000 0.00 0.00 36.41 3.41
4020 4803 0.677731 ACATGGGTCGGCACATTGAG 60.678 55.000 0.00 0.00 36.41 3.02
4021 4804 0.959867 CACATGGGTCGGCACATTGA 60.960 55.000 0.00 0.00 36.41 2.57
4022 4805 1.243342 ACACATGGGTCGGCACATTG 61.243 55.000 0.00 7.46 36.41 2.82
4023 4806 1.074775 ACACATGGGTCGGCACATT 59.925 52.632 0.00 0.00 36.41 2.71
4024 4807 1.675310 CACACATGGGTCGGCACAT 60.675 57.895 0.00 0.00 39.81 3.21
4025 4808 2.281414 CACACATGGGTCGGCACA 60.281 61.111 0.00 0.00 0.00 4.57
4026 4809 3.737172 GCACACATGGGTCGGCAC 61.737 66.667 0.00 0.00 0.00 5.01
4035 4818 4.088762 GTCACGCCGGCACACATG 62.089 66.667 28.98 15.66 0.00 3.21
4050 4833 2.973180 GATAGGGCGGCCAACTCGTC 62.973 65.000 31.59 13.79 0.00 4.20
4051 4834 3.081409 ATAGGGCGGCCAACTCGT 61.081 61.111 31.59 10.89 0.00 4.18
4052 4835 1.461091 TAGATAGGGCGGCCAACTCG 61.461 60.000 31.59 0.00 0.00 4.18
4053 4836 0.977395 ATAGATAGGGCGGCCAACTC 59.023 55.000 31.59 21.65 0.00 3.01
4054 4837 1.900486 GTATAGATAGGGCGGCCAACT 59.100 52.381 31.59 25.04 0.00 3.16
4055 4838 1.066358 GGTATAGATAGGGCGGCCAAC 60.066 57.143 31.59 19.59 0.00 3.77
4056 4839 1.272807 GGTATAGATAGGGCGGCCAA 58.727 55.000 31.59 8.70 0.00 4.52
4057 4840 0.115547 TGGTATAGATAGGGCGGCCA 59.884 55.000 31.59 16.58 0.00 5.36
4058 4841 1.272807 TTGGTATAGATAGGGCGGCC 58.727 55.000 22.67 22.67 0.00 6.13
4059 4842 4.957684 ATATTGGTATAGATAGGGCGGC 57.042 45.455 0.00 0.00 0.00 6.53
4060 4843 9.326413 CTTTTTATATTGGTATAGATAGGGCGG 57.674 37.037 0.00 0.00 0.00 6.13
4089 4872 1.207811 GGTTTGGATCTGCCCATTTGG 59.792 52.381 0.00 0.00 35.87 3.28
4090 4873 1.901159 TGGTTTGGATCTGCCCATTTG 59.099 47.619 0.00 0.00 35.87 2.32
4091 4874 2.323999 TGGTTTGGATCTGCCCATTT 57.676 45.000 0.00 0.00 35.87 2.32
4092 4875 2.023695 AGATGGTTTGGATCTGCCCATT 60.024 45.455 7.74 0.00 36.08 3.16
4093 4876 1.572415 AGATGGTTTGGATCTGCCCAT 59.428 47.619 6.49 6.49 38.58 4.00
4094 4877 1.002069 AGATGGTTTGGATCTGCCCA 58.998 50.000 0.00 0.00 34.97 5.36
4095 4878 1.064463 TGAGATGGTTTGGATCTGCCC 60.064 52.381 0.00 0.00 34.97 5.36
4096 4879 2.424956 GTTGAGATGGTTTGGATCTGCC 59.575 50.000 0.00 0.00 29.97 4.85
4097 4880 2.424956 GGTTGAGATGGTTTGGATCTGC 59.575 50.000 0.00 0.00 29.97 4.26
4098 4881 2.679837 CGGTTGAGATGGTTTGGATCTG 59.320 50.000 0.00 0.00 29.97 2.90
4099 4882 2.305927 ACGGTTGAGATGGTTTGGATCT 59.694 45.455 0.00 0.00 32.63 2.75
4100 4883 2.678336 GACGGTTGAGATGGTTTGGATC 59.322 50.000 0.00 0.00 0.00 3.36
4101 4884 2.039746 TGACGGTTGAGATGGTTTGGAT 59.960 45.455 0.00 0.00 0.00 3.41
4102 4885 1.418264 TGACGGTTGAGATGGTTTGGA 59.582 47.619 0.00 0.00 0.00 3.53
4103 4886 1.890876 TGACGGTTGAGATGGTTTGG 58.109 50.000 0.00 0.00 0.00 3.28
4104 4887 3.980646 TTTGACGGTTGAGATGGTTTG 57.019 42.857 0.00 0.00 0.00 2.93
4105 4888 4.141287 TGATTTGACGGTTGAGATGGTTT 58.859 39.130 0.00 0.00 0.00 3.27
4106 4889 3.750371 TGATTTGACGGTTGAGATGGTT 58.250 40.909 0.00 0.00 0.00 3.67
4107 4890 3.417069 TGATTTGACGGTTGAGATGGT 57.583 42.857 0.00 0.00 0.00 3.55
4108 4891 4.970662 AATGATTTGACGGTTGAGATGG 57.029 40.909 0.00 0.00 0.00 3.51
4109 4892 8.400947 AGATAAAATGATTTGACGGTTGAGATG 58.599 33.333 0.00 0.00 0.00 2.90
4110 4893 8.511604 AGATAAAATGATTTGACGGTTGAGAT 57.488 30.769 0.00 0.00 0.00 2.75
4111 4894 7.921786 AGATAAAATGATTTGACGGTTGAGA 57.078 32.000 0.00 0.00 0.00 3.27
4112 4895 7.852945 GCTAGATAAAATGATTTGACGGTTGAG 59.147 37.037 0.00 0.00 0.00 3.02
4113 4896 7.465379 CGCTAGATAAAATGATTTGACGGTTGA 60.465 37.037 0.00 0.00 0.00 3.18
4114 4897 6.628856 CGCTAGATAAAATGATTTGACGGTTG 59.371 38.462 0.00 0.00 0.00 3.77
4115 4898 6.238374 CCGCTAGATAAAATGATTTGACGGTT 60.238 38.462 0.00 0.00 0.00 4.44
4116 4899 5.236478 CCGCTAGATAAAATGATTTGACGGT 59.764 40.000 0.00 0.00 0.00 4.83
4117 4900 5.236478 ACCGCTAGATAAAATGATTTGACGG 59.764 40.000 0.00 0.00 40.13 4.79
4118 4901 6.287107 ACCGCTAGATAAAATGATTTGACG 57.713 37.500 0.00 0.00 0.00 4.35
4119 4902 9.997482 TTAAACCGCTAGATAAAATGATTTGAC 57.003 29.630 0.00 0.00 0.00 3.18
4123 4906 9.878599 CGATTTAAACCGCTAGATAAAATGATT 57.121 29.630 0.00 0.00 0.00 2.57
4124 4907 8.015658 GCGATTTAAACCGCTAGATAAAATGAT 58.984 33.333 19.76 0.00 46.96 2.45
4125 4908 7.349711 GCGATTTAAACCGCTAGATAAAATGA 58.650 34.615 19.76 0.00 46.96 2.57
4126 4909 7.534848 GCGATTTAAACCGCTAGATAAAATG 57.465 36.000 19.76 0.00 46.96 2.32
4137 4920 5.968848 TCAATATTGAAGCGATTTAAACCGC 59.031 36.000 19.44 19.44 41.00 5.68
4138 4921 6.140737 GCTCAATATTGAAGCGATTTAAACCG 59.859 38.462 18.47 0.00 36.64 4.44
4139 4922 6.972328 TGCTCAATATTGAAGCGATTTAAACC 59.028 34.615 18.47 0.00 36.64 3.27
4140 4923 7.044052 GGTGCTCAATATTGAAGCGATTTAAAC 60.044 37.037 18.47 14.05 36.64 2.01
4141 4924 6.972328 GGTGCTCAATATTGAAGCGATTTAAA 59.028 34.615 18.47 5.13 36.64 1.52
4142 4925 6.094742 TGGTGCTCAATATTGAAGCGATTTAA 59.905 34.615 18.47 0.00 36.64 1.52
4143 4926 5.588246 TGGTGCTCAATATTGAAGCGATTTA 59.412 36.000 18.47 6.28 36.64 1.40
4144 4927 4.398988 TGGTGCTCAATATTGAAGCGATTT 59.601 37.500 18.47 0.00 36.64 2.17
4145 4928 3.947196 TGGTGCTCAATATTGAAGCGATT 59.053 39.130 18.47 0.00 36.64 3.34
4146 4929 3.544684 TGGTGCTCAATATTGAAGCGAT 58.455 40.909 18.47 0.00 36.64 4.58
4147 4930 2.984562 TGGTGCTCAATATTGAAGCGA 58.015 42.857 18.47 11.57 36.64 4.93
4148 4931 3.763097 TTGGTGCTCAATATTGAAGCG 57.237 42.857 18.47 8.89 36.64 4.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.