Multiple sequence alignment - TraesCS7A01G304100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G304100 chr7A 100.000 5230 0 0 1 5230 427822698 427817469 0.000000e+00 9659.0
1 TraesCS7A01G304100 chr7A 99.174 242 2 0 1979 2220 427820481 427820240 2.240000e-118 436.0
2 TraesCS7A01G304100 chr7A 99.174 242 2 0 2218 2459 427820720 427820479 2.240000e-118 436.0
3 TraesCS7A01G304100 chr7A 74.531 373 73 20 267 626 701441311 701440948 5.460000e-30 143.0
4 TraesCS7A01G304100 chr7B 94.507 2148 104 7 2680 4820 374725462 374723322 0.000000e+00 3301.0
5 TraesCS7A01G304100 chr7B 97.754 1380 26 3 842 2220 374727097 374725722 0.000000e+00 2372.0
6 TraesCS7A01G304100 chr7B 95.717 467 11 3 2218 2684 374725962 374725505 0.000000e+00 743.0
7 TraesCS7A01G304100 chr7B 83.811 593 75 13 225 801 374727684 374727097 1.280000e-150 544.0
8 TraesCS7A01G304100 chr7B 85.372 417 22 21 4818 5230 374723279 374722898 3.800000e-106 396.0
9 TraesCS7A01G304100 chr7D 91.289 1986 105 17 291 2220 379572037 379570064 0.000000e+00 2647.0
10 TraesCS7A01G304100 chr7D 89.877 1877 141 32 2680 4514 379569805 379567936 0.000000e+00 2368.0
11 TraesCS7A01G304100 chr7D 95.503 467 12 3 2218 2684 379570305 379569848 0.000000e+00 737.0
12 TraesCS7A01G304100 chr7D 82.569 327 54 3 131 455 46644076 46643751 8.570000e-73 285.0
13 TraesCS7A01G304100 chr7D 81.579 266 30 11 4949 5204 379330853 379330597 8.880000e-48 202.0
14 TraesCS7A01G304100 chr7D 100.000 32 0 0 1 32 185870156 185870125 5.660000e-05 60.2
15 TraesCS7A01G304100 chr2B 78.977 528 103 8 131 652 778452556 778452031 2.320000e-93 353.0
16 TraesCS7A01G304100 chr1D 78.505 535 99 16 125 652 472291944 472292469 2.330000e-88 337.0
17 TraesCS7A01G304100 chr1D 75.969 387 82 11 221 601 391957406 391957787 6.910000e-44 189.0
18 TraesCS7A01G304100 chr6A 76.389 504 86 21 132 627 473161807 473162285 1.880000e-59 241.0
19 TraesCS7A01G304100 chr1A 76.991 339 74 4 291 626 584529976 584530313 1.920000e-44 191.0
20 TraesCS7A01G304100 chr1A 74.400 250 54 8 126 372 13091054 13090812 1.200000e-16 99.0
21 TraesCS7A01G304100 chr5D 76.512 281 58 6 349 626 555200493 555200218 4.220000e-31 147.0
22 TraesCS7A01G304100 chr3D 75.945 291 64 4 349 637 147839110 147838824 1.520000e-30 145.0
23 TraesCS7A01G304100 chr2D 100.000 30 0 0 1 30 190788994 190789023 7.320000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G304100 chr7A 427817469 427822698 5229 True 3510.333333 9659 99.449333 1 5230 3 chr7A.!!$R2 5229
1 TraesCS7A01G304100 chr7B 374722898 374727684 4786 True 1471.200000 3301 91.432200 225 5230 5 chr7B.!!$R1 5005
2 TraesCS7A01G304100 chr7D 379567936 379572037 4101 True 1917.333333 2647 92.223000 291 4514 3 chr7D.!!$R4 4223
3 TraesCS7A01G304100 chr2B 778452031 778452556 525 True 353.000000 353 78.977000 131 652 1 chr2B.!!$R1 521
4 TraesCS7A01G304100 chr1D 472291944 472292469 525 False 337.000000 337 78.505000 125 652 1 chr1D.!!$F2 527

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
276 277 0.248784 CGTCTAATTCCCGTCCCGAC 60.249 60.0 0.00 0.0 0.00 4.79 F
476 480 0.321298 GGTGCGCTGGTTCTTTAGGA 60.321 55.0 9.73 0.0 0.00 2.94 F
2279 2347 0.459489 AGAGATCACTTGCTCTCCGC 59.541 55.0 6.49 0.0 37.87 5.54 F
2406 2474 0.175989 GGGACCTCGTCATCCACTTC 59.824 60.0 0.00 0.0 36.65 3.01 F
2407 2475 0.895530 GGACCTCGTCATCCACTTCA 59.104 55.0 0.00 0.0 34.87 3.02 F
4025 4146 0.657840 GAGAAATCATGGCCGGTTCG 59.342 55.0 1.90 0.0 0.00 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1306 1374 0.541998 TGGACTGGAAGAAGAGGCGA 60.542 55.0 0.00 0.00 37.43 5.54 R
2387 2455 0.175989 GAAGTGGATGACGAGGTCCC 59.824 60.0 0.00 0.00 33.45 4.46 R
3346 3464 0.028902 GGCGGGACATTTTATCGTGC 59.971 55.0 0.00 0.00 0.00 5.34 R
4025 4146 0.235926 GAGCTTGTTGAACTCACCGC 59.764 55.0 0.00 0.00 0.00 5.68 R
4139 4265 0.253044 GCCACAATGCTGGAGTCCTA 59.747 55.0 11.33 0.00 32.30 2.94 R
4854 5060 0.255604 TCATGATTGGGCCGTGTCAT 59.744 50.0 11.05 11.05 0.00 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.683475 GGGACCCCCATTCACAGG 59.317 66.667 0.00 0.00 44.65 4.00
20 21 1.928567 GGGACCCCCATTCACAGGA 60.929 63.158 0.00 0.00 44.65 3.86
21 22 1.303282 GGACCCCCATTCACAGGAC 59.697 63.158 0.00 0.00 0.00 3.85
22 23 1.078426 GACCCCCATTCACAGGACG 60.078 63.158 0.00 0.00 0.00 4.79
23 24 2.438434 CCCCCATTCACAGGACGC 60.438 66.667 0.00 0.00 0.00 5.19
24 25 2.438434 CCCCATTCACAGGACGCC 60.438 66.667 0.00 0.00 0.00 5.68
25 26 2.819595 CCCATTCACAGGACGCCG 60.820 66.667 0.00 0.00 0.00 6.46
26 27 2.264480 CCATTCACAGGACGCCGA 59.736 61.111 0.00 0.00 0.00 5.54
27 28 2.100631 CCATTCACAGGACGCCGAC 61.101 63.158 0.00 0.00 0.00 4.79
28 29 1.374125 CATTCACAGGACGCCGACA 60.374 57.895 0.00 0.00 0.00 4.35
29 30 1.079819 ATTCACAGGACGCCGACAG 60.080 57.895 0.00 0.00 0.00 3.51
30 31 1.816863 ATTCACAGGACGCCGACAGT 61.817 55.000 0.00 0.00 0.00 3.55
31 32 1.174078 TTCACAGGACGCCGACAGTA 61.174 55.000 0.00 0.00 0.00 2.74
32 33 0.963856 TCACAGGACGCCGACAGTAT 60.964 55.000 0.00 0.00 0.00 2.12
33 34 0.736636 CACAGGACGCCGACAGTATA 59.263 55.000 0.00 0.00 0.00 1.47
34 35 1.337071 CACAGGACGCCGACAGTATAT 59.663 52.381 0.00 0.00 0.00 0.86
35 36 2.029623 ACAGGACGCCGACAGTATATT 58.970 47.619 0.00 0.00 0.00 1.28
36 37 2.034305 ACAGGACGCCGACAGTATATTC 59.966 50.000 0.00 0.00 0.00 1.75
37 38 2.034179 CAGGACGCCGACAGTATATTCA 59.966 50.000 0.00 0.00 0.00 2.57
38 39 2.691526 AGGACGCCGACAGTATATTCAA 59.308 45.455 0.00 0.00 0.00 2.69
39 40 3.131577 AGGACGCCGACAGTATATTCAAA 59.868 43.478 0.00 0.00 0.00 2.69
40 41 3.866910 GGACGCCGACAGTATATTCAAAA 59.133 43.478 0.00 0.00 0.00 2.44
41 42 4.025979 GGACGCCGACAGTATATTCAAAAG 60.026 45.833 0.00 0.00 0.00 2.27
42 43 3.308866 ACGCCGACAGTATATTCAAAAGC 59.691 43.478 0.00 0.00 0.00 3.51
43 44 3.601586 CGCCGACAGTATATTCAAAAGCG 60.602 47.826 0.00 0.00 0.00 4.68
44 45 3.554324 GCCGACAGTATATTCAAAAGCGA 59.446 43.478 0.00 0.00 0.00 4.93
45 46 4.033587 GCCGACAGTATATTCAAAAGCGAA 59.966 41.667 0.00 0.00 0.00 4.70
46 47 5.446741 GCCGACAGTATATTCAAAAGCGAAA 60.447 40.000 0.00 0.00 0.00 3.46
47 48 6.539324 CCGACAGTATATTCAAAAGCGAAAA 58.461 36.000 0.00 0.00 0.00 2.29
48 49 7.018826 CCGACAGTATATTCAAAAGCGAAAAA 58.981 34.615 0.00 0.00 0.00 1.94
49 50 7.216317 CCGACAGTATATTCAAAAGCGAAAAAG 59.784 37.037 0.00 0.00 0.00 2.27
50 51 7.744715 CGACAGTATATTCAAAAGCGAAAAAGT 59.255 33.333 0.00 0.00 0.00 2.66
61 62 9.485206 TCAAAAGCGAAAAAGTATAGAAGTAGT 57.515 29.630 0.00 0.00 0.00 2.73
101 102 4.720046 AGAAAAGTCTTGTTCCTCCTTCC 58.280 43.478 0.00 0.00 0.00 3.46
102 103 2.841442 AAGTCTTGTTCCTCCTTCCG 57.159 50.000 0.00 0.00 0.00 4.30
103 104 1.718280 AGTCTTGTTCCTCCTTCCGT 58.282 50.000 0.00 0.00 0.00 4.69
104 105 2.047830 AGTCTTGTTCCTCCTTCCGTT 58.952 47.619 0.00 0.00 0.00 4.44
105 106 2.143925 GTCTTGTTCCTCCTTCCGTTG 58.856 52.381 0.00 0.00 0.00 4.10
106 107 1.071699 TCTTGTTCCTCCTTCCGTTGG 59.928 52.381 0.00 0.00 0.00 3.77
107 108 0.536460 TTGTTCCTCCTTCCGTTGGC 60.536 55.000 0.00 0.00 0.00 4.52
108 109 2.033194 GTTCCTCCTTCCGTTGGCG 61.033 63.158 0.00 0.00 37.95 5.69
109 110 3.894547 TTCCTCCTTCCGTTGGCGC 62.895 63.158 0.00 0.00 36.67 6.53
116 117 4.683721 TCCGTTGGCGCCGCTTTA 62.684 61.111 23.90 3.93 36.67 1.85
117 118 4.160635 CCGTTGGCGCCGCTTTAG 62.161 66.667 23.90 9.49 36.67 1.85
118 119 3.115892 CGTTGGCGCCGCTTTAGA 61.116 61.111 23.90 0.00 0.00 2.10
119 120 2.461110 CGTTGGCGCCGCTTTAGAT 61.461 57.895 23.90 0.00 0.00 1.98
120 121 1.352056 GTTGGCGCCGCTTTAGATC 59.648 57.895 23.90 0.00 0.00 2.75
121 122 1.817941 TTGGCGCCGCTTTAGATCC 60.818 57.895 23.90 0.00 0.00 3.36
122 123 3.338676 GGCGCCGCTTTAGATCCG 61.339 66.667 12.58 0.00 0.00 4.18
123 124 4.001784 GCGCCGCTTTAGATCCGC 62.002 66.667 0.00 0.00 34.50 5.54
124 125 3.692367 CGCCGCTTTAGATCCGCG 61.692 66.667 0.00 0.00 45.86 6.46
125 126 4.001784 GCCGCTTTAGATCCGCGC 62.002 66.667 0.00 0.00 45.02 6.86
126 127 3.338676 CCGCTTTAGATCCGCGCC 61.339 66.667 0.00 0.00 45.02 6.53
127 128 2.584970 CGCTTTAGATCCGCGCCA 60.585 61.111 0.00 0.00 40.42 5.69
128 129 1.956170 CGCTTTAGATCCGCGCCAT 60.956 57.895 0.00 0.00 40.42 4.40
129 130 1.862806 GCTTTAGATCCGCGCCATC 59.137 57.895 0.00 4.14 0.00 3.51
210 211 3.025322 TGGTTCAATGTCTTGGTTGGT 57.975 42.857 0.00 0.00 32.95 3.67
219 220 0.254462 TCTTGGTTGGTGCTGTGTGA 59.746 50.000 0.00 0.00 0.00 3.58
221 222 1.372838 TTGGTTGGTGCTGTGTGACG 61.373 55.000 0.00 0.00 0.00 4.35
237 238 4.838152 CGGTGGCGATGTCCCTGG 62.838 72.222 0.00 0.00 0.00 4.45
254 255 5.130477 GTCCCTGGGTAGAAATAATGTCTCA 59.870 44.000 13.56 0.00 0.00 3.27
276 277 0.248784 CGTCTAATTCCCGTCCCGAC 60.249 60.000 0.00 0.00 0.00 4.79
287 288 1.227176 GTCCCGACGGTGGAATAGC 60.227 63.158 13.94 0.00 32.59 2.97
325 328 0.898789 AGGTGTGTCTCCGTCGGATT 60.899 55.000 15.81 0.00 0.00 3.01
329 332 1.341852 TGTGTCTCCGTCGGATTTTGA 59.658 47.619 15.81 5.58 0.00 2.69
337 340 2.627945 CGTCGGATTTTGAGGGATTCA 58.372 47.619 0.00 0.00 0.00 2.57
355 358 1.618343 TCAGTCGATGCTGGTCTTTGA 59.382 47.619 3.46 0.00 37.12 2.69
392 395 5.356882 TCCAATTTGTGTTCATCTTCGTC 57.643 39.130 0.00 0.00 0.00 4.20
395 398 1.144969 TTGTGTTCATCTTCGTCCGC 58.855 50.000 0.00 0.00 0.00 5.54
405 408 0.940519 CTTCGTCCGCGTGGTTACAA 60.941 55.000 16.01 3.31 39.49 2.41
410 413 2.134346 GTCCGCGTGGTTACAAGTTTA 58.866 47.619 16.01 0.00 36.30 2.01
423 426 7.120138 TGGTTACAAGTTTAATCTTTCCGATCC 59.880 37.037 0.00 0.00 0.00 3.36
449 453 2.028876 TCTCTTCATCGGCGATGGTTA 58.971 47.619 39.82 26.86 40.15 2.85
455 459 0.530650 ATCGGCGATGGTTACTGCTG 60.531 55.000 23.36 0.00 35.04 4.41
468 472 4.873810 TGCTGTGGTGCGCTGGTT 62.874 61.111 9.73 0.00 35.36 3.67
476 480 0.321298 GGTGCGCTGGTTCTTTAGGA 60.321 55.000 9.73 0.00 0.00 2.94
484 488 4.267928 CGCTGGTTCTTTAGGATCTTAACG 59.732 45.833 0.00 0.00 0.00 3.18
491 495 7.012421 GGTTCTTTAGGATCTTAACGCAATGAT 59.988 37.037 0.00 0.00 0.00 2.45
497 501 6.115446 AGGATCTTAACGCAATGATTTCTCA 58.885 36.000 0.00 0.00 35.41 3.27
506 510 5.877012 ACGCAATGATTTCTCAACTGTCTAT 59.123 36.000 0.00 0.00 34.37 1.98
523 527 8.128322 ACTGTCTATCACAATAAAGTCTGTCT 57.872 34.615 0.00 0.00 33.31 3.41
526 530 7.178451 TGTCTATCACAATAAAGTCTGTCTGGA 59.822 37.037 0.00 0.00 29.30 3.86
532 536 2.777832 AAAGTCTGTCTGGATCCAGC 57.222 50.000 33.39 27.07 43.31 4.85
550 555 2.845550 CGAGGGATGGCGATGACGA 61.846 63.158 0.00 0.00 42.66 4.20
576 581 0.963856 TCCTTCGGCTCGCTTCAGTA 60.964 55.000 0.00 0.00 0.00 2.74
601 606 1.079336 GTCGTTGCTAGGTGGTCCC 60.079 63.158 0.00 0.00 0.00 4.46
650 662 3.758023 TCCAGTGTTTTATGGACTGCATG 59.242 43.478 0.00 0.00 40.70 4.06
651 663 3.758023 CCAGTGTTTTATGGACTGCATGA 59.242 43.478 0.00 0.00 39.02 3.07
653 671 5.105635 CCAGTGTTTTATGGACTGCATGAAT 60.106 40.000 0.00 0.00 39.02 2.57
655 673 7.191551 CAGTGTTTTATGGACTGCATGAATAG 58.808 38.462 0.00 0.00 31.31 1.73
710 732 3.818773 GCGTATAATATTGGCCCACAACT 59.181 43.478 0.00 0.00 42.94 3.16
727 749 8.512138 GCCCACAACTATTGGATGTATAATTAC 58.488 37.037 0.00 0.00 36.02 1.89
764 786 6.811253 ACATTTTGAACGGCTTAGATTACA 57.189 33.333 0.00 0.00 0.00 2.41
827 849 9.744468 CTAACCCCGGATTTAATTAAGAATTTG 57.256 33.333 0.73 0.00 32.38 2.32
933 1000 1.137697 AACCTGTTCGTTTCCCTCCT 58.862 50.000 0.00 0.00 0.00 3.69
1258 1326 2.034221 GGCGGCAAGAAGAAGGGT 59.966 61.111 3.07 0.00 0.00 4.34
1762 1830 5.007034 TGAATCGTGTTGGTAAATCATGGT 58.993 37.500 0.00 0.00 0.00 3.55
1890 1958 5.522456 AGTGTGCACAAATATCTGTGTTTG 58.478 37.500 23.59 0.00 46.93 2.93
2099 2167 4.536364 CATGTCGTTCATGTTGGGTATC 57.464 45.455 12.56 0.00 46.18 2.24
2239 2307 1.917872 GGTAACCATGGCAACCTTGA 58.082 50.000 23.04 0.00 31.33 3.02
2240 2308 1.818674 GGTAACCATGGCAACCTTGAG 59.181 52.381 23.04 0.00 31.33 3.02
2241 2309 2.554344 GGTAACCATGGCAACCTTGAGA 60.554 50.000 23.04 0.00 31.33 3.27
2242 2310 2.380064 AACCATGGCAACCTTGAGAA 57.620 45.000 13.04 0.00 31.33 2.87
2243 2311 2.610438 ACCATGGCAACCTTGAGAAT 57.390 45.000 13.04 0.00 31.33 2.40
2244 2312 2.173519 ACCATGGCAACCTTGAGAATG 58.826 47.619 13.04 0.00 31.33 2.67
2245 2313 1.134907 CCATGGCAACCTTGAGAATGC 60.135 52.381 0.00 0.00 38.06 3.56
2246 2314 1.822990 CATGGCAACCTTGAGAATGCT 59.177 47.619 0.00 0.00 38.79 3.79
2247 2315 1.250328 TGGCAACCTTGAGAATGCTG 58.750 50.000 0.00 0.00 38.79 4.41
2248 2316 1.251251 GGCAACCTTGAGAATGCTGT 58.749 50.000 0.00 0.00 38.79 4.40
2249 2317 1.615392 GGCAACCTTGAGAATGCTGTT 59.385 47.619 0.00 0.00 38.79 3.16
2250 2318 2.608752 GGCAACCTTGAGAATGCTGTTG 60.609 50.000 0.00 0.00 38.79 3.33
2251 2319 2.294233 GCAACCTTGAGAATGCTGTTGA 59.706 45.455 5.93 0.00 36.15 3.18
2252 2320 3.854784 GCAACCTTGAGAATGCTGTTGAC 60.855 47.826 5.93 0.00 36.15 3.18
2253 2321 2.146342 ACCTTGAGAATGCTGTTGACG 58.854 47.619 0.00 0.00 0.00 4.35
2254 2322 2.146342 CCTTGAGAATGCTGTTGACGT 58.854 47.619 0.00 0.00 0.00 4.34
2255 2323 2.158449 CCTTGAGAATGCTGTTGACGTC 59.842 50.000 9.11 9.11 0.00 4.34
2256 2324 1.795768 TGAGAATGCTGTTGACGTCC 58.204 50.000 14.12 0.00 0.00 4.79
2257 2325 1.344438 TGAGAATGCTGTTGACGTCCT 59.656 47.619 14.12 0.00 0.00 3.85
2258 2326 1.728971 GAGAATGCTGTTGACGTCCTG 59.271 52.381 14.12 3.75 0.00 3.86
2259 2327 1.344438 AGAATGCTGTTGACGTCCTGA 59.656 47.619 14.12 0.00 0.00 3.86
2260 2328 2.143122 GAATGCTGTTGACGTCCTGAA 58.857 47.619 14.12 0.00 0.00 3.02
2261 2329 1.800805 ATGCTGTTGACGTCCTGAAG 58.199 50.000 14.12 6.68 0.00 3.02
2262 2330 0.750249 TGCTGTTGACGTCCTGAAGA 59.250 50.000 14.12 0.00 0.00 2.87
2263 2331 1.269778 TGCTGTTGACGTCCTGAAGAG 60.270 52.381 14.12 9.79 0.00 2.85
2264 2332 1.000163 GCTGTTGACGTCCTGAAGAGA 60.000 52.381 14.12 0.00 0.00 3.10
2265 2333 2.353208 GCTGTTGACGTCCTGAAGAGAT 60.353 50.000 14.12 0.00 0.00 2.75
2266 2334 3.506810 CTGTTGACGTCCTGAAGAGATC 58.493 50.000 14.12 0.00 0.00 2.75
2267 2335 2.890945 TGTTGACGTCCTGAAGAGATCA 59.109 45.455 14.12 0.00 36.38 2.92
2268 2336 3.246619 GTTGACGTCCTGAAGAGATCAC 58.753 50.000 14.12 0.00 33.47 3.06
2269 2337 2.796557 TGACGTCCTGAAGAGATCACT 58.203 47.619 14.12 0.00 33.47 3.41
2270 2338 3.157881 TGACGTCCTGAAGAGATCACTT 58.842 45.455 14.12 4.97 33.47 3.16
2271 2339 3.057245 TGACGTCCTGAAGAGATCACTTG 60.057 47.826 14.12 0.00 33.47 3.16
2272 2340 2.266554 CGTCCTGAAGAGATCACTTGC 58.733 52.381 10.32 3.31 33.47 4.01
2273 2341 2.094286 CGTCCTGAAGAGATCACTTGCT 60.094 50.000 10.32 0.00 33.47 3.91
2274 2342 3.520569 GTCCTGAAGAGATCACTTGCTC 58.479 50.000 10.32 0.00 33.47 4.26
2275 2343 3.195396 GTCCTGAAGAGATCACTTGCTCT 59.805 47.826 10.32 0.00 43.00 4.09
2276 2344 3.446873 TCCTGAAGAGATCACTTGCTCTC 59.553 47.826 10.32 2.44 40.43 3.20
2277 2345 3.430651 CCTGAAGAGATCACTTGCTCTCC 60.431 52.174 10.32 0.00 40.43 3.71
2278 2346 2.165234 TGAAGAGATCACTTGCTCTCCG 59.835 50.000 10.32 0.00 40.43 4.63
2279 2347 0.459489 AGAGATCACTTGCTCTCCGC 59.541 55.000 6.49 0.00 37.87 5.54
2293 2361 5.084385 GCTCTCCGCAACAAGTATAATTC 57.916 43.478 0.00 0.00 38.92 2.17
2294 2362 4.811557 GCTCTCCGCAACAAGTATAATTCT 59.188 41.667 0.00 0.00 38.92 2.40
2295 2363 5.050702 GCTCTCCGCAACAAGTATAATTCTC 60.051 44.000 0.00 0.00 38.92 2.87
2296 2364 5.357257 TCTCCGCAACAAGTATAATTCTCC 58.643 41.667 0.00 0.00 0.00 3.71
2297 2365 5.092554 TCCGCAACAAGTATAATTCTCCA 57.907 39.130 0.00 0.00 0.00 3.86
2298 2366 5.680619 TCCGCAACAAGTATAATTCTCCAT 58.319 37.500 0.00 0.00 0.00 3.41
2299 2367 5.758296 TCCGCAACAAGTATAATTCTCCATC 59.242 40.000 0.00 0.00 0.00 3.51
2300 2368 5.527214 CCGCAACAAGTATAATTCTCCATCA 59.473 40.000 0.00 0.00 0.00 3.07
2301 2369 6.205464 CCGCAACAAGTATAATTCTCCATCAT 59.795 38.462 0.00 0.00 0.00 2.45
2302 2370 7.255242 CCGCAACAAGTATAATTCTCCATCATT 60.255 37.037 0.00 0.00 0.00 2.57
2303 2371 8.131100 CGCAACAAGTATAATTCTCCATCATTT 58.869 33.333 0.00 0.00 0.00 2.32
2304 2372 9.455847 GCAACAAGTATAATTCTCCATCATTTC 57.544 33.333 0.00 0.00 0.00 2.17
2305 2373 9.956720 CAACAAGTATAATTCTCCATCATTTCC 57.043 33.333 0.00 0.00 0.00 3.13
2306 2374 9.927081 AACAAGTATAATTCTCCATCATTTCCT 57.073 29.630 0.00 0.00 0.00 3.36
2307 2375 9.566432 ACAAGTATAATTCTCCATCATTTCCTC 57.434 33.333 0.00 0.00 0.00 3.71
2308 2376 9.565090 CAAGTATAATTCTCCATCATTTCCTCA 57.435 33.333 0.00 0.00 0.00 3.86
2310 2378 9.736414 AGTATAATTCTCCATCATTTCCTCATG 57.264 33.333 0.00 0.00 0.00 3.07
2311 2379 9.512588 GTATAATTCTCCATCATTTCCTCATGT 57.487 33.333 0.00 0.00 0.00 3.21
2312 2380 6.956202 AATTCTCCATCATTTCCTCATGTC 57.044 37.500 0.00 0.00 0.00 3.06
2313 2381 4.063998 TCTCCATCATTTCCTCATGTCG 57.936 45.455 0.00 0.00 0.00 4.35
2314 2382 3.706086 TCTCCATCATTTCCTCATGTCGA 59.294 43.478 0.00 0.00 0.00 4.20
2315 2383 4.162131 TCTCCATCATTTCCTCATGTCGAA 59.838 41.667 0.00 0.00 0.00 3.71
2316 2384 4.842574 TCCATCATTTCCTCATGTCGAAA 58.157 39.130 10.82 10.82 32.82 3.46
2317 2385 4.635765 TCCATCATTTCCTCATGTCGAAAC 59.364 41.667 10.69 0.00 31.15 2.78
2318 2386 4.395854 CCATCATTTCCTCATGTCGAAACA 59.604 41.667 10.69 3.85 40.38 2.83
2338 2406 4.536364 CATGTCGTTCATGTTGGGTATC 57.464 45.455 12.56 0.00 46.18 2.24
2339 2407 2.980568 TGTCGTTCATGTTGGGTATCC 58.019 47.619 0.00 0.00 0.00 2.59
2340 2408 2.303311 TGTCGTTCATGTTGGGTATCCA 59.697 45.455 0.00 0.00 42.25 3.41
2341 2409 3.054728 TGTCGTTCATGTTGGGTATCCAT 60.055 43.478 0.00 0.00 43.63 3.41
2342 2410 4.162509 TGTCGTTCATGTTGGGTATCCATA 59.837 41.667 0.00 0.00 43.63 2.74
2343 2411 4.510340 GTCGTTCATGTTGGGTATCCATAC 59.490 45.833 0.00 0.00 43.63 2.39
2344 2412 4.407621 TCGTTCATGTTGGGTATCCATACT 59.592 41.667 0.00 0.00 43.63 2.12
2345 2413 5.599242 TCGTTCATGTTGGGTATCCATACTA 59.401 40.000 0.00 0.00 43.63 1.82
2346 2414 5.926542 CGTTCATGTTGGGTATCCATACTAG 59.073 44.000 0.00 0.00 43.63 2.57
2347 2415 6.462487 CGTTCATGTTGGGTATCCATACTAGT 60.462 42.308 0.00 0.00 43.63 2.57
2348 2416 7.280356 GTTCATGTTGGGTATCCATACTAGTT 58.720 38.462 0.00 0.00 43.63 2.24
2349 2417 7.446106 TCATGTTGGGTATCCATACTAGTTT 57.554 36.000 0.00 0.00 43.63 2.66
2350 2418 7.279615 TCATGTTGGGTATCCATACTAGTTTG 58.720 38.462 0.00 3.05 43.63 2.93
2351 2419 5.996644 TGTTGGGTATCCATACTAGTTTGG 58.003 41.667 22.47 22.47 43.63 3.28
2352 2420 5.104277 TGTTGGGTATCCATACTAGTTTGGG 60.104 44.000 26.25 14.61 43.63 4.12
2353 2421 3.977999 TGGGTATCCATACTAGTTTGGGG 59.022 47.826 26.25 12.44 38.32 4.96
2354 2422 3.329814 GGGTATCCATACTAGTTTGGGGG 59.670 52.174 26.25 10.90 33.31 5.40
2355 2423 3.978672 GGTATCCATACTAGTTTGGGGGT 59.021 47.826 26.25 17.09 33.31 4.95
2356 2424 5.157395 GGTATCCATACTAGTTTGGGGGTA 58.843 45.833 26.25 16.30 33.31 3.69
2357 2425 5.608015 GGTATCCATACTAGTTTGGGGGTAA 59.392 44.000 26.25 11.60 33.31 2.85
2358 2426 5.641789 ATCCATACTAGTTTGGGGGTAAC 57.358 43.478 26.25 0.00 33.31 2.50
2359 2427 4.702196 TCCATACTAGTTTGGGGGTAACT 58.298 43.478 26.25 0.00 39.13 2.24
2360 2428 4.472108 TCCATACTAGTTTGGGGGTAACTG 59.528 45.833 26.25 3.95 36.56 3.16
2361 2429 2.873094 ACTAGTTTGGGGGTAACTGC 57.127 50.000 0.00 0.00 36.56 4.40
2362 2430 1.353358 ACTAGTTTGGGGGTAACTGCC 59.647 52.381 0.00 0.00 36.56 4.85
2363 2431 1.633945 CTAGTTTGGGGGTAACTGCCT 59.366 52.381 0.00 0.00 36.56 4.75
2364 2432 1.750022 AGTTTGGGGGTAACTGCCTA 58.250 50.000 0.00 0.00 34.68 3.93
2365 2433 2.067386 AGTTTGGGGGTAACTGCCTAA 58.933 47.619 0.00 0.00 34.68 2.69
2366 2434 2.447811 AGTTTGGGGGTAACTGCCTAAA 59.552 45.455 0.00 0.00 34.68 1.85
2367 2435 2.559668 GTTTGGGGGTAACTGCCTAAAC 59.440 50.000 0.00 0.00 40.30 2.01
2368 2436 1.447099 TGGGGGTAACTGCCTAAACA 58.553 50.000 0.00 0.00 0.00 2.83
2369 2437 1.997040 TGGGGGTAACTGCCTAAACAT 59.003 47.619 0.00 0.00 0.00 2.71
2370 2438 2.291282 TGGGGGTAACTGCCTAAACATG 60.291 50.000 0.00 0.00 0.00 3.21
2371 2439 2.291346 GGGGGTAACTGCCTAAACATGT 60.291 50.000 0.00 0.00 0.00 3.21
2372 2440 3.427573 GGGGTAACTGCCTAAACATGTT 58.572 45.455 4.92 4.92 0.00 2.71
2373 2441 3.830178 GGGGTAACTGCCTAAACATGTTT 59.170 43.478 25.99 25.99 36.63 2.83
2374 2442 4.282449 GGGGTAACTGCCTAAACATGTTTT 59.718 41.667 27.66 11.38 34.23 2.43
2375 2443 5.477637 GGGGTAACTGCCTAAACATGTTTTA 59.522 40.000 27.66 10.39 34.23 1.52
2376 2444 6.384224 GGGTAACTGCCTAAACATGTTTTAC 58.616 40.000 27.66 19.95 34.23 2.01
2377 2445 6.016108 GGGTAACTGCCTAAACATGTTTTACA 60.016 38.462 27.66 20.45 34.23 2.41
2378 2446 6.859508 GGTAACTGCCTAAACATGTTTTACAC 59.140 38.462 27.66 15.49 34.23 2.90
2379 2447 6.709018 AACTGCCTAAACATGTTTTACACT 57.291 33.333 27.66 6.29 34.23 3.55
2380 2448 6.072112 ACTGCCTAAACATGTTTTACACTG 57.928 37.500 27.66 18.91 34.23 3.66
2381 2449 5.825679 ACTGCCTAAACATGTTTTACACTGA 59.174 36.000 27.66 8.20 34.23 3.41
2382 2450 6.320164 ACTGCCTAAACATGTTTTACACTGAA 59.680 34.615 27.66 7.49 34.23 3.02
2383 2451 6.500041 TGCCTAAACATGTTTTACACTGAAC 58.500 36.000 27.66 9.04 34.23 3.18
2384 2452 6.095580 TGCCTAAACATGTTTTACACTGAACA 59.904 34.615 27.66 11.16 39.78 3.18
2385 2453 6.975772 GCCTAAACATGTTTTACACTGAACAA 59.024 34.615 27.66 5.58 39.03 2.83
2386 2454 7.651704 GCCTAAACATGTTTTACACTGAACAAT 59.348 33.333 27.66 2.12 39.03 2.71
2387 2455 8.967218 CCTAAACATGTTTTACACTGAACAATG 58.033 33.333 27.66 0.37 39.03 2.82
2388 2456 7.769272 AAACATGTTTTACACTGAACAATGG 57.231 32.000 18.13 0.00 39.03 3.16
2389 2457 5.841810 ACATGTTTTACACTGAACAATGGG 58.158 37.500 0.00 0.00 39.03 4.00
2390 2458 5.596361 ACATGTTTTACACTGAACAATGGGA 59.404 36.000 0.00 0.00 39.03 4.37
2391 2459 5.508200 TGTTTTACACTGAACAATGGGAC 57.492 39.130 0.00 0.00 33.19 4.46
2392 2460 4.339814 TGTTTTACACTGAACAATGGGACC 59.660 41.667 0.00 0.00 33.19 4.46
2393 2461 4.447138 TTTACACTGAACAATGGGACCT 57.553 40.909 0.00 0.00 0.00 3.85
2394 2462 2.568623 ACACTGAACAATGGGACCTC 57.431 50.000 0.00 0.00 0.00 3.85
2395 2463 1.270839 ACACTGAACAATGGGACCTCG 60.271 52.381 0.00 0.00 0.00 4.63
2396 2464 1.056660 ACTGAACAATGGGACCTCGT 58.943 50.000 0.00 0.00 0.00 4.18
2397 2465 1.002087 ACTGAACAATGGGACCTCGTC 59.998 52.381 0.00 0.00 0.00 4.20
2398 2466 1.001974 CTGAACAATGGGACCTCGTCA 59.998 52.381 0.00 0.00 33.68 4.35
2399 2467 1.628340 TGAACAATGGGACCTCGTCAT 59.372 47.619 0.00 0.00 33.68 3.06
2400 2468 2.280628 GAACAATGGGACCTCGTCATC 58.719 52.381 0.00 0.00 33.68 2.92
2401 2469 0.541863 ACAATGGGACCTCGTCATCC 59.458 55.000 0.00 0.00 33.68 3.51
2402 2470 0.541392 CAATGGGACCTCGTCATCCA 59.459 55.000 0.00 0.00 36.65 3.41
2403 2471 0.541863 AATGGGACCTCGTCATCCAC 59.458 55.000 0.00 0.00 36.65 4.02
2404 2472 0.325671 ATGGGACCTCGTCATCCACT 60.326 55.000 0.00 0.00 36.65 4.00
2405 2473 0.544357 TGGGACCTCGTCATCCACTT 60.544 55.000 0.00 0.00 36.65 3.16
2406 2474 0.175989 GGGACCTCGTCATCCACTTC 59.824 60.000 0.00 0.00 36.65 3.01
2407 2475 0.895530 GGACCTCGTCATCCACTTCA 59.104 55.000 0.00 0.00 34.87 3.02
2408 2476 1.275291 GGACCTCGTCATCCACTTCAA 59.725 52.381 0.00 0.00 34.87 2.69
2409 2477 2.093447 GGACCTCGTCATCCACTTCAAT 60.093 50.000 0.00 0.00 34.87 2.57
2410 2478 3.132289 GGACCTCGTCATCCACTTCAATA 59.868 47.826 0.00 0.00 34.87 1.90
2411 2479 4.382685 GGACCTCGTCATCCACTTCAATAA 60.383 45.833 0.00 0.00 34.87 1.40
2412 2480 4.504858 ACCTCGTCATCCACTTCAATAAC 58.495 43.478 0.00 0.00 0.00 1.89
2413 2481 4.223032 ACCTCGTCATCCACTTCAATAACT 59.777 41.667 0.00 0.00 0.00 2.24
2414 2482 4.568359 CCTCGTCATCCACTTCAATAACTG 59.432 45.833 0.00 0.00 0.00 3.16
2415 2483 5.147330 TCGTCATCCACTTCAATAACTGT 57.853 39.130 0.00 0.00 0.00 3.55
2416 2484 5.547465 TCGTCATCCACTTCAATAACTGTT 58.453 37.500 0.00 0.00 0.00 3.16
2417 2485 6.693466 TCGTCATCCACTTCAATAACTGTTA 58.307 36.000 2.26 2.26 0.00 2.41
2418 2486 7.156000 TCGTCATCCACTTCAATAACTGTTAA 58.844 34.615 4.11 0.00 0.00 2.01
2419 2487 7.658167 TCGTCATCCACTTCAATAACTGTTAAA 59.342 33.333 4.11 0.00 0.00 1.52
2420 2488 7.957484 CGTCATCCACTTCAATAACTGTTAAAG 59.043 37.037 4.11 6.63 0.00 1.85
2421 2489 8.999431 GTCATCCACTTCAATAACTGTTAAAGA 58.001 33.333 14.28 8.63 0.00 2.52
2422 2490 9.219603 TCATCCACTTCAATAACTGTTAAAGAG 57.780 33.333 14.28 8.41 0.00 2.85
2423 2491 9.003658 CATCCACTTCAATAACTGTTAAAGAGT 57.996 33.333 14.28 9.24 0.00 3.24
2425 2493 9.706691 TCCACTTCAATAACTGTTAAAGAGTAG 57.293 33.333 14.28 8.91 0.00 2.57
2426 2494 9.490379 CCACTTCAATAACTGTTAAAGAGTAGT 57.510 33.333 14.28 9.36 0.00 2.73
2482 2550 5.006746 GCTTTACCTTATGATGTCGAGTTGG 59.993 44.000 0.00 0.00 0.00 3.77
2490 2558 3.804036 TGATGTCGAGTTGGTGAACTTT 58.196 40.909 0.00 0.00 42.80 2.66
2512 2580 5.160607 TGGATCGTTGAAGGAAGTGTAAT 57.839 39.130 0.00 0.00 0.00 1.89
2562 2630 9.331282 GTATTTCAGCTATGAAGTTGGAGTTAT 57.669 33.333 0.00 0.00 45.89 1.89
2723 2838 7.789273 AAATGAATGCTTTGATTGTCACAAA 57.211 28.000 0.00 0.00 36.15 2.83
2780 2898 9.439537 CTTCTTTCAAAAAGTTACTCTTGTAGC 57.560 33.333 6.93 0.00 36.40 3.58
2785 2903 6.142798 TCAAAAAGTTACTCTTGTAGCGTACG 59.857 38.462 11.84 11.84 36.40 3.67
2796 2914 4.896562 TGTAGCGTACGATTTCACTTTG 57.103 40.909 21.65 0.00 0.00 2.77
2802 2920 5.231568 AGCGTACGATTTCACTTTGTATAGC 59.768 40.000 21.65 0.00 0.00 2.97
2803 2921 5.005012 GCGTACGATTTCACTTTGTATAGCA 59.995 40.000 21.65 0.00 0.00 3.49
2812 2930 7.936496 TTCACTTTGTATAGCATGGATTTCA 57.064 32.000 0.00 0.00 0.00 2.69
2827 2945 4.240096 GGATTTCATGCTTTGGACACTTG 58.760 43.478 0.00 0.00 0.00 3.16
2902 3020 3.165875 TCTGGGAAGATCAGAAAGTCGT 58.834 45.455 0.00 0.00 38.20 4.34
2928 3046 2.500910 AGCAGAGGATTGAGAAGGACAG 59.499 50.000 0.00 0.00 0.00 3.51
2929 3047 2.419851 GCAGAGGATTGAGAAGGACAGG 60.420 54.545 0.00 0.00 0.00 4.00
2958 3076 6.721318 TGATAAAGAAGTTGAGGGTATGCTT 58.279 36.000 0.00 0.00 0.00 3.91
2981 3099 8.613482 GCTTATAACAACTTAAGATCTGTTCCC 58.387 37.037 18.77 7.13 34.08 3.97
3005 3123 8.977412 CCCTGAATTTACATATTTAGTTTGGGT 58.023 33.333 0.00 0.00 0.00 4.51
3024 3142 5.076182 TGGGTGTTGATCTCTGCAAATAAA 58.924 37.500 0.00 0.00 0.00 1.40
3143 3261 4.214971 CAGAACCAGACAAATCCAGTGAAG 59.785 45.833 0.00 0.00 0.00 3.02
3241 3359 1.556911 AGATGGATGCAACGAGAAGGT 59.443 47.619 0.00 0.00 0.00 3.50
3346 3464 3.535561 ACTTAGATGCGGATGACAAAGG 58.464 45.455 0.00 0.00 0.00 3.11
3394 3512 6.145048 CCGTTCGGGTATAATGATTACACTTC 59.855 42.308 3.04 0.00 0.00 3.01
3403 3521 7.869016 ATAATGATTACACTTCGGATACACG 57.131 36.000 0.00 0.00 0.00 4.49
3434 3552 1.007038 TCGCTGTGAACGTGGTACC 60.007 57.895 4.43 4.43 0.00 3.34
3509 3627 3.510388 TCATTTTTGAAACACACGGCA 57.490 38.095 0.00 0.00 0.00 5.69
3537 3655 5.835280 ACTGGAAAATCAACATTTCAGGAGT 59.165 36.000 0.00 0.00 38.29 3.85
3614 3732 6.198687 CACGAATGTTACAACTTCAACATGT 58.801 36.000 0.00 0.00 42.93 3.21
3895 4016 1.625315 GAAGGGGCAAGAAAAGGCATT 59.375 47.619 0.00 0.00 0.00 3.56
3915 4036 1.593265 GCAAATGGTCCAAGGGCAG 59.407 57.895 0.00 0.00 0.00 4.85
4010 4131 3.181443 GGGAAAGGTGAAAGTCCTGAGAA 60.181 47.826 0.00 0.00 35.27 2.87
4025 4146 0.657840 GAGAAATCATGGCCGGTTCG 59.342 55.000 1.90 0.00 0.00 3.95
4035 4156 3.110178 CCGGTTCGCGGTGAGTTC 61.110 66.667 6.13 0.00 0.00 3.01
4061 4187 1.274712 CTCAGCTCAGGTTCTTCCCT 58.725 55.000 0.00 0.00 36.75 4.20
4139 4265 3.264193 TGGATCTGTTGTTGCAGGATAGT 59.736 43.478 0.00 0.00 37.12 2.12
4200 4326 1.133809 AGGCAAAGGTGGGCAGTCTA 61.134 55.000 0.00 0.00 0.00 2.59
4241 4367 5.477637 TGAGAAGAGATGATGATCCTAGCTG 59.522 44.000 0.00 0.00 0.00 4.24
4242 4368 5.396485 AGAAGAGATGATGATCCTAGCTGT 58.604 41.667 0.00 0.00 0.00 4.40
4243 4369 5.244402 AGAAGAGATGATGATCCTAGCTGTG 59.756 44.000 0.00 0.00 0.00 3.66
4244 4370 3.258872 AGAGATGATGATCCTAGCTGTGC 59.741 47.826 0.00 0.00 0.00 4.57
4248 4374 1.690893 GATGATCCTAGCTGTGCTCCA 59.309 52.381 0.00 0.00 40.44 3.86
4268 4395 3.571571 CAACTGAGAATGCATGTTGTGG 58.428 45.455 15.26 2.60 34.91 4.17
4346 4498 8.786898 CATGAATCCAGATTTTGTAATCGGTAT 58.213 33.333 0.00 0.00 43.99 2.73
4361 4513 4.280436 TCGGTATACTATTGGCATTGGG 57.720 45.455 2.25 0.00 0.00 4.12
4398 4550 3.441572 GGTTGGACACAATCTCTCAATGG 59.558 47.826 0.00 0.00 39.13 3.16
4467 4627 1.067060 GTCAAGGGTTCAGTTTGTGCC 59.933 52.381 0.00 0.00 0.00 5.01
4489 4649 3.553922 CCACGGTGGCATTGTTTATTTGT 60.554 43.478 15.29 0.00 0.00 2.83
4612 4772 1.724582 GCTGCTGTGTCCGGTTTTGT 61.725 55.000 0.00 0.00 0.00 2.83
4629 4789 2.421751 TGTTCGGTTCACTTTTGGGA 57.578 45.000 0.00 0.00 0.00 4.37
4759 4919 5.027460 TCCCATCCTGCTAACAGTTTACTA 58.973 41.667 0.00 0.00 42.81 1.82
4761 4921 6.157994 TCCCATCCTGCTAACAGTTTACTATT 59.842 38.462 0.00 0.00 42.81 1.73
4791 4951 7.715265 TCTGTATTCTTCTGTGTGAGAAAAC 57.285 36.000 0.00 0.00 40.33 2.43
4830 5035 0.042731 AGCCTGGTAGGTGCTAGGAA 59.957 55.000 1.50 0.00 39.18 3.36
4852 5058 0.591659 GGTGGTTTTTCTGGAGACGC 59.408 55.000 0.00 0.00 0.00 5.19
4854 5060 0.181587 TGGTTTTTCTGGAGACGCCA 59.818 50.000 0.00 0.00 46.96 5.69
4924 5130 9.755064 CATGTAGGTTCTTTTTCTTAATGTACG 57.245 33.333 0.00 0.00 0.00 3.67
4967 5173 5.182169 ACTCTACTAGTAGGTGCTCAACT 57.818 43.478 26.06 4.06 36.36 3.16
4968 5174 5.572252 ACTCTACTAGTAGGTGCTCAACTT 58.428 41.667 26.06 3.48 36.36 2.66
4969 5175 5.648960 ACTCTACTAGTAGGTGCTCAACTTC 59.351 44.000 26.06 0.00 36.36 3.01
4970 5176 5.817784 TCTACTAGTAGGTGCTCAACTTCT 58.182 41.667 26.06 0.00 34.06 2.85
4987 5193 7.679783 TCAACTTCTAGATCCACTGAAAATGA 58.320 34.615 0.00 0.00 0.00 2.57
5000 5206 8.690884 TCCACTGAAAATGATGTTTAGTGAAAA 58.309 29.630 18.64 4.51 36.96 2.29
5011 5217 8.364894 TGATGTTTAGTGAAAAGCTACACTCTA 58.635 33.333 19.38 10.12 44.59 2.43
5012 5218 7.941795 TGTTTAGTGAAAAGCTACACTCTAC 57.058 36.000 19.38 17.75 44.59 2.59
5013 5219 7.723324 TGTTTAGTGAAAAGCTACACTCTACT 58.277 34.615 19.38 7.09 44.59 2.57
5113 5322 5.583932 AGACTAAATTCCATCTTTTGCCCT 58.416 37.500 0.00 0.00 0.00 5.19
5147 5356 4.463050 TTTTGACAGGAACTACCCCATT 57.537 40.909 0.00 0.00 36.02 3.16
5152 5361 4.847512 TGACAGGAACTACCCCATTTAAGA 59.152 41.667 0.00 0.00 36.02 2.10
5162 5371 8.753497 ACTACCCCATTTAAGAGATTTTCATC 57.247 34.615 0.00 0.00 0.00 2.92
5167 5376 6.095440 CCCATTTAAGAGATTTTCATCCGTGT 59.905 38.462 0.00 0.00 0.00 4.49
5178 5387 5.776173 TTTCATCCGTGTTACCACATTTT 57.224 34.783 0.00 0.00 41.93 1.82
5179 5388 6.879276 TTTCATCCGTGTTACCACATTTTA 57.121 33.333 0.00 0.00 41.93 1.52
5187 5396 6.752815 CCGTGTTACCACATTTTACAAAACTT 59.247 34.615 0.00 0.00 41.93 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.928567 TCCTGTGAATGGGGGTCCC 60.929 63.158 0.00 0.00 45.71 4.46
3 4 1.303282 GTCCTGTGAATGGGGGTCC 59.697 63.158 0.00 0.00 0.00 4.46
4 5 1.078426 CGTCCTGTGAATGGGGGTC 60.078 63.158 0.00 0.00 0.00 4.46
5 6 3.077907 CGTCCTGTGAATGGGGGT 58.922 61.111 0.00 0.00 0.00 4.95
6 7 2.438434 GCGTCCTGTGAATGGGGG 60.438 66.667 0.00 0.00 0.00 5.40
7 8 2.438434 GGCGTCCTGTGAATGGGG 60.438 66.667 0.00 0.00 0.00 4.96
8 9 2.819595 CGGCGTCCTGTGAATGGG 60.820 66.667 0.00 0.00 0.00 4.00
9 10 2.100631 GTCGGCGTCCTGTGAATGG 61.101 63.158 6.85 0.00 0.00 3.16
10 11 1.354337 CTGTCGGCGTCCTGTGAATG 61.354 60.000 6.85 0.00 0.00 2.67
11 12 1.079819 CTGTCGGCGTCCTGTGAAT 60.080 57.895 6.85 0.00 0.00 2.57
12 13 1.174078 TACTGTCGGCGTCCTGTGAA 61.174 55.000 6.85 0.00 0.00 3.18
13 14 0.963856 ATACTGTCGGCGTCCTGTGA 60.964 55.000 6.85 0.22 0.00 3.58
14 15 0.736636 TATACTGTCGGCGTCCTGTG 59.263 55.000 6.85 0.00 0.00 3.66
15 16 1.688772 ATATACTGTCGGCGTCCTGT 58.311 50.000 6.85 11.39 0.00 4.00
16 17 2.034179 TGAATATACTGTCGGCGTCCTG 59.966 50.000 6.85 5.76 0.00 3.86
17 18 2.304092 TGAATATACTGTCGGCGTCCT 58.696 47.619 6.85 0.00 0.00 3.85
18 19 2.787601 TGAATATACTGTCGGCGTCC 57.212 50.000 6.85 0.00 0.00 4.79
19 20 4.550255 GCTTTTGAATATACTGTCGGCGTC 60.550 45.833 6.85 0.72 0.00 5.19
20 21 3.308866 GCTTTTGAATATACTGTCGGCGT 59.691 43.478 6.85 0.00 0.00 5.68
21 22 3.601586 CGCTTTTGAATATACTGTCGGCG 60.602 47.826 0.00 0.00 0.00 6.46
22 23 3.554324 TCGCTTTTGAATATACTGTCGGC 59.446 43.478 0.00 0.00 0.00 5.54
23 24 5.712217 TTCGCTTTTGAATATACTGTCGG 57.288 39.130 0.00 0.00 0.00 4.79
24 25 7.744715 ACTTTTTCGCTTTTGAATATACTGTCG 59.255 33.333 0.00 0.00 0.00 4.35
25 26 8.950403 ACTTTTTCGCTTTTGAATATACTGTC 57.050 30.769 0.00 0.00 0.00 3.51
35 36 9.485206 ACTACTTCTATACTTTTTCGCTTTTGA 57.515 29.630 0.00 0.00 0.00 2.69
78 79 5.133941 GGAAGGAGGAACAAGACTTTTCTT 58.866 41.667 8.84 3.61 43.35 2.52
79 80 4.720046 GGAAGGAGGAACAAGACTTTTCT 58.280 43.478 8.84 0.00 0.00 2.52
80 81 3.498777 CGGAAGGAGGAACAAGACTTTTC 59.501 47.826 0.00 0.00 0.00 2.29
81 82 3.118000 ACGGAAGGAGGAACAAGACTTTT 60.118 43.478 0.00 0.00 0.00 2.27
82 83 2.438392 ACGGAAGGAGGAACAAGACTTT 59.562 45.455 0.00 0.00 0.00 2.66
83 84 2.047830 ACGGAAGGAGGAACAAGACTT 58.952 47.619 0.00 0.00 0.00 3.01
84 85 1.718280 ACGGAAGGAGGAACAAGACT 58.282 50.000 0.00 0.00 0.00 3.24
85 86 2.143925 CAACGGAAGGAGGAACAAGAC 58.856 52.381 0.00 0.00 0.00 3.01
86 87 1.071699 CCAACGGAAGGAGGAACAAGA 59.928 52.381 0.00 0.00 0.00 3.02
87 88 1.523758 CCAACGGAAGGAGGAACAAG 58.476 55.000 0.00 0.00 0.00 3.16
88 89 0.536460 GCCAACGGAAGGAGGAACAA 60.536 55.000 0.00 0.00 0.00 2.83
89 90 1.072505 GCCAACGGAAGGAGGAACA 59.927 57.895 0.00 0.00 0.00 3.18
90 91 2.033194 CGCCAACGGAAGGAGGAAC 61.033 63.158 0.00 0.00 34.97 3.62
91 92 2.345991 CGCCAACGGAAGGAGGAA 59.654 61.111 0.00 0.00 34.97 3.36
92 93 4.388499 GCGCCAACGGAAGGAGGA 62.388 66.667 0.00 0.00 40.57 3.71
99 100 4.683721 TAAAGCGGCGCCAACGGA 62.684 61.111 30.40 5.07 40.57 4.69
100 101 4.160635 CTAAAGCGGCGCCAACGG 62.161 66.667 30.40 11.41 40.57 4.44
101 102 2.361427 GATCTAAAGCGGCGCCAACG 62.361 60.000 30.40 14.18 44.07 4.10
102 103 1.352056 GATCTAAAGCGGCGCCAAC 59.648 57.895 30.40 18.38 0.00 3.77
103 104 1.817941 GGATCTAAAGCGGCGCCAA 60.818 57.895 30.40 13.42 0.00 4.52
104 105 2.203015 GGATCTAAAGCGGCGCCA 60.203 61.111 30.40 13.45 0.00 5.69
105 106 3.338676 CGGATCTAAAGCGGCGCC 61.339 66.667 30.40 19.07 0.00 6.53
106 107 4.001784 GCGGATCTAAAGCGGCGC 62.002 66.667 26.86 26.86 0.00 6.53
111 112 1.862806 GATGGCGCGGATCTAAAGC 59.137 57.895 8.83 0.00 0.00 3.51
112 113 2.145225 CGATGGCGCGGATCTAAAG 58.855 57.895 8.83 0.00 0.00 1.85
113 114 4.336581 CGATGGCGCGGATCTAAA 57.663 55.556 8.83 0.00 0.00 1.85
122 123 4.944372 CCGTACCTCCGATGGCGC 62.944 72.222 0.00 0.00 35.83 6.53
123 124 3.195591 CTCCGTACCTCCGATGGCG 62.196 68.421 0.00 0.00 37.24 5.69
124 125 2.728817 CTCCGTACCTCCGATGGC 59.271 66.667 0.00 0.00 0.00 4.40
125 126 0.539901 ATCCTCCGTACCTCCGATGG 60.540 60.000 0.00 0.00 0.00 3.51
126 127 0.882474 GATCCTCCGTACCTCCGATG 59.118 60.000 0.00 0.00 0.00 3.84
127 128 0.772384 AGATCCTCCGTACCTCCGAT 59.228 55.000 0.00 0.00 0.00 4.18
128 129 0.108207 GAGATCCTCCGTACCTCCGA 59.892 60.000 0.00 0.00 0.00 4.55
129 130 1.229315 CGAGATCCTCCGTACCTCCG 61.229 65.000 0.00 0.00 0.00 4.63
219 220 4.082523 CAGGGACATCGCCACCGT 62.083 66.667 0.00 0.00 35.54 4.83
221 222 4.489771 CCCAGGGACATCGCCACC 62.490 72.222 0.00 0.00 0.00 4.61
237 238 6.331061 AGACGTGTGAGACATTATTTCTACC 58.669 40.000 0.00 0.00 0.00 3.18
254 255 0.533951 GGGACGGGAATTAGACGTGT 59.466 55.000 0.00 0.00 41.40 4.49
276 277 1.876714 CCGACACGCTATTCCACCG 60.877 63.158 0.00 0.00 0.00 4.94
281 282 0.454600 TGTCCTCCGACACGCTATTC 59.545 55.000 0.00 0.00 44.20 1.75
282 283 2.575108 TGTCCTCCGACACGCTATT 58.425 52.632 0.00 0.00 44.20 1.73
325 328 2.237143 AGCATCGACTGAATCCCTCAAA 59.763 45.455 0.00 0.00 32.17 2.69
329 332 0.467384 CCAGCATCGACTGAATCCCT 59.533 55.000 4.68 0.00 40.25 4.20
337 340 2.625737 CATCAAAGACCAGCATCGACT 58.374 47.619 0.00 0.00 0.00 4.18
384 387 0.457337 GTAACCACGCGGACGAAGAT 60.457 55.000 12.47 0.00 43.93 2.40
392 395 3.434299 AGATTAAACTTGTAACCACGCGG 59.566 43.478 12.47 0.00 38.77 6.46
395 398 6.073657 TCGGAAAGATTAAACTTGTAACCACG 60.074 38.462 0.00 0.00 0.00 4.94
405 408 7.124448 AGAGTAGTGGATCGGAAAGATTAAACT 59.876 37.037 0.00 0.00 40.26 2.66
410 413 5.205056 AGAGAGTAGTGGATCGGAAAGATT 58.795 41.667 0.00 0.00 40.26 2.40
423 426 1.671328 TCGCCGATGAAGAGAGTAGTG 59.329 52.381 0.00 0.00 0.00 2.74
455 459 0.517316 CTAAAGAACCAGCGCACCAC 59.483 55.000 11.47 0.00 0.00 4.16
468 472 8.506168 AAATCATTGCGTTAAGATCCTAAAGA 57.494 30.769 1.69 0.00 0.00 2.52
476 480 7.094634 ACAGTTGAGAAATCATTGCGTTAAGAT 60.095 33.333 0.00 0.00 0.00 2.40
484 488 7.148356 TGTGATAGACAGTTGAGAAATCATTGC 60.148 37.037 0.00 0.00 0.00 3.56
491 495 9.778741 ACTTTATTGTGATAGACAGTTGAGAAA 57.221 29.630 0.00 0.00 35.44 2.52
497 501 8.589338 AGACAGACTTTATTGTGATAGACAGTT 58.411 33.333 0.00 0.00 35.44 3.16
506 510 5.248248 TGGATCCAGACAGACTTTATTGTGA 59.752 40.000 11.44 0.00 0.00 3.58
523 527 2.142761 CCATCCCTCGCTGGATCCA 61.143 63.158 15.27 15.27 43.39 3.41
526 530 3.933722 CGCCATCCCTCGCTGGAT 61.934 66.667 0.17 0.17 46.22 3.41
532 536 2.355126 CGTCATCGCCATCCCTCG 60.355 66.667 0.00 0.00 0.00 4.63
576 581 2.029290 CCACCTAGCAACGACTACAAGT 60.029 50.000 0.00 0.00 0.00 3.16
630 636 5.375417 TTCATGCAGTCCATAAAACACTG 57.625 39.130 0.00 0.00 40.53 3.66
679 697 5.063564 GGCCAATATTATACGCTCAGCTAAC 59.936 44.000 0.00 0.00 0.00 2.34
680 698 5.175859 GGCCAATATTATACGCTCAGCTAA 58.824 41.667 0.00 0.00 0.00 3.09
681 699 4.382685 GGGCCAATATTATACGCTCAGCTA 60.383 45.833 4.39 0.00 0.00 3.32
727 749 8.837059 CCGTTCAAAATGTTTAATCTAGTTTCG 58.163 33.333 0.00 0.00 0.00 3.46
742 764 8.514136 TTTTGTAATCTAAGCCGTTCAAAATG 57.486 30.769 0.00 0.00 31.65 2.32
933 1000 4.144297 CTCTTCTTGTGGTTGGATTTGGA 58.856 43.478 0.00 0.00 0.00 3.53
1122 1189 1.692749 CGGATTGGGAGGGAAGGGA 60.693 63.158 0.00 0.00 0.00 4.20
1258 1326 0.680921 GCTTGCAGATGGGGCACTTA 60.681 55.000 0.00 0.00 41.75 2.24
1306 1374 0.541998 TGGACTGGAAGAAGAGGCGA 60.542 55.000 0.00 0.00 37.43 5.54
1503 1571 1.694150 CCAGCCCAATAAGAGATCCGA 59.306 52.381 0.00 0.00 0.00 4.55
1603 1671 2.413765 GACTCCCGCATCGTCTCC 59.586 66.667 0.00 0.00 0.00 3.71
1762 1830 2.082231 CGTCTTCCTCGACAACTCCTA 58.918 52.381 0.00 0.00 33.54 2.94
1890 1958 5.814764 AAGACAGATGCATTTCACTCATC 57.185 39.130 0.00 0.00 37.46 2.92
2099 2167 4.777463 CAGTTACCCCCAAACTAGTATGG 58.223 47.826 0.00 0.00 35.44 2.74
2220 2288 1.818674 CTCAAGGTTGCCATGGTTACC 59.181 52.381 22.71 22.71 0.00 2.85
2221 2289 2.790433 TCTCAAGGTTGCCATGGTTAC 58.210 47.619 14.67 11.45 0.00 2.50
2222 2290 3.517296 TTCTCAAGGTTGCCATGGTTA 57.483 42.857 14.67 0.00 0.00 2.85
2223 2291 2.380064 TTCTCAAGGTTGCCATGGTT 57.620 45.000 14.67 0.00 0.00 3.67
2224 2292 2.173519 CATTCTCAAGGTTGCCATGGT 58.826 47.619 14.67 0.00 0.00 3.55
2225 2293 1.134907 GCATTCTCAAGGTTGCCATGG 60.135 52.381 7.63 7.63 0.00 3.66
2226 2294 1.822990 AGCATTCTCAAGGTTGCCATG 59.177 47.619 0.00 0.00 35.71 3.66
2227 2295 1.822990 CAGCATTCTCAAGGTTGCCAT 59.177 47.619 0.00 0.00 35.71 4.40
2228 2296 1.250328 CAGCATTCTCAAGGTTGCCA 58.750 50.000 0.00 0.00 35.71 4.92
2229 2297 1.251251 ACAGCATTCTCAAGGTTGCC 58.749 50.000 0.00 0.00 35.71 4.52
2230 2298 2.294233 TCAACAGCATTCTCAAGGTTGC 59.706 45.455 0.00 0.00 36.48 4.17
2231 2299 3.607775 CGTCAACAGCATTCTCAAGGTTG 60.608 47.826 0.00 0.00 37.53 3.77
2232 2300 2.549754 CGTCAACAGCATTCTCAAGGTT 59.450 45.455 0.00 0.00 0.00 3.50
2233 2301 2.146342 CGTCAACAGCATTCTCAAGGT 58.854 47.619 0.00 0.00 0.00 3.50
2234 2302 2.146342 ACGTCAACAGCATTCTCAAGG 58.854 47.619 0.00 0.00 0.00 3.61
2235 2303 2.158449 GGACGTCAACAGCATTCTCAAG 59.842 50.000 18.91 0.00 0.00 3.02
2236 2304 2.143122 GGACGTCAACAGCATTCTCAA 58.857 47.619 18.91 0.00 0.00 3.02
2237 2305 1.344438 AGGACGTCAACAGCATTCTCA 59.656 47.619 18.91 0.00 0.00 3.27
2238 2306 1.728971 CAGGACGTCAACAGCATTCTC 59.271 52.381 18.91 0.00 0.00 2.87
2239 2307 1.344438 TCAGGACGTCAACAGCATTCT 59.656 47.619 18.91 0.00 0.00 2.40
2240 2308 1.795768 TCAGGACGTCAACAGCATTC 58.204 50.000 18.91 0.00 0.00 2.67
2241 2309 2.146342 CTTCAGGACGTCAACAGCATT 58.854 47.619 18.91 0.00 0.00 3.56
2242 2310 1.344438 TCTTCAGGACGTCAACAGCAT 59.656 47.619 18.91 0.00 0.00 3.79
2243 2311 0.750249 TCTTCAGGACGTCAACAGCA 59.250 50.000 18.91 0.00 0.00 4.41
2244 2312 1.000163 TCTCTTCAGGACGTCAACAGC 60.000 52.381 18.91 0.00 0.00 4.40
2245 2313 3.057245 TGATCTCTTCAGGACGTCAACAG 60.057 47.826 18.91 7.38 0.00 3.16
2246 2314 2.890945 TGATCTCTTCAGGACGTCAACA 59.109 45.455 18.91 0.00 0.00 3.33
2247 2315 3.057174 AGTGATCTCTTCAGGACGTCAAC 60.057 47.826 18.91 0.05 34.17 3.18
2248 2316 3.157881 AGTGATCTCTTCAGGACGTCAA 58.842 45.455 18.91 1.98 34.17 3.18
2249 2317 2.796557 AGTGATCTCTTCAGGACGTCA 58.203 47.619 18.91 0.00 34.17 4.35
2250 2318 3.506810 CAAGTGATCTCTTCAGGACGTC 58.493 50.000 7.13 7.13 34.17 4.34
2251 2319 2.353208 GCAAGTGATCTCTTCAGGACGT 60.353 50.000 7.06 0.00 34.17 4.34
2252 2320 2.094286 AGCAAGTGATCTCTTCAGGACG 60.094 50.000 7.06 0.00 34.17 4.79
2253 2321 3.195396 AGAGCAAGTGATCTCTTCAGGAC 59.805 47.826 7.06 0.00 35.67 3.85
2254 2322 3.439154 AGAGCAAGTGATCTCTTCAGGA 58.561 45.455 7.06 0.00 35.67 3.86
2255 2323 3.891422 AGAGCAAGTGATCTCTTCAGG 57.109 47.619 7.06 0.00 35.67 3.86
2272 2340 5.463724 GGAGAATTATACTTGTTGCGGAGAG 59.536 44.000 0.00 0.00 0.00 3.20
2273 2341 5.105106 TGGAGAATTATACTTGTTGCGGAGA 60.105 40.000 0.00 0.00 0.00 3.71
2274 2342 5.116180 TGGAGAATTATACTTGTTGCGGAG 58.884 41.667 0.00 0.00 0.00 4.63
2275 2343 5.092554 TGGAGAATTATACTTGTTGCGGA 57.907 39.130 0.00 0.00 0.00 5.54
2276 2344 5.527214 TGATGGAGAATTATACTTGTTGCGG 59.473 40.000 0.00 0.00 0.00 5.69
2277 2345 6.603237 TGATGGAGAATTATACTTGTTGCG 57.397 37.500 0.00 0.00 0.00 4.85
2278 2346 9.455847 GAAATGATGGAGAATTATACTTGTTGC 57.544 33.333 0.00 0.00 0.00 4.17
2279 2347 9.956720 GGAAATGATGGAGAATTATACTTGTTG 57.043 33.333 0.00 0.00 0.00 3.33
2280 2348 9.927081 AGGAAATGATGGAGAATTATACTTGTT 57.073 29.630 0.00 0.00 0.00 2.83
2281 2349 9.566432 GAGGAAATGATGGAGAATTATACTTGT 57.434 33.333 0.00 0.00 0.00 3.16
2282 2350 9.565090 TGAGGAAATGATGGAGAATTATACTTG 57.435 33.333 0.00 0.00 0.00 3.16
2284 2352 9.736414 CATGAGGAAATGATGGAGAATTATACT 57.264 33.333 0.00 0.00 0.00 2.12
2285 2353 9.512588 ACATGAGGAAATGATGGAGAATTATAC 57.487 33.333 0.00 0.00 0.00 1.47
2286 2354 9.730705 GACATGAGGAAATGATGGAGAATTATA 57.269 33.333 0.00 0.00 0.00 0.98
2287 2355 7.389884 CGACATGAGGAAATGATGGAGAATTAT 59.610 37.037 0.00 0.00 0.00 1.28
2288 2356 6.707608 CGACATGAGGAAATGATGGAGAATTA 59.292 38.462 0.00 0.00 0.00 1.40
2289 2357 5.530171 CGACATGAGGAAATGATGGAGAATT 59.470 40.000 0.00 0.00 0.00 2.17
2290 2358 5.061853 CGACATGAGGAAATGATGGAGAAT 58.938 41.667 0.00 0.00 0.00 2.40
2291 2359 4.162131 TCGACATGAGGAAATGATGGAGAA 59.838 41.667 0.00 0.00 0.00 2.87
2292 2360 3.706086 TCGACATGAGGAAATGATGGAGA 59.294 43.478 0.00 0.00 0.00 3.71
2293 2361 4.063998 TCGACATGAGGAAATGATGGAG 57.936 45.455 0.00 0.00 0.00 3.86
2294 2362 4.486125 TTCGACATGAGGAAATGATGGA 57.514 40.909 0.00 0.00 0.00 3.41
2295 2363 4.395854 TGTTTCGACATGAGGAAATGATGG 59.604 41.667 15.35 0.00 34.93 3.51
2296 2364 5.550232 TGTTTCGACATGAGGAAATGATG 57.450 39.130 15.35 0.00 34.93 3.07
2318 2386 3.054728 TGGATACCCAACATGAACGACAT 60.055 43.478 0.00 0.00 40.09 3.06
2319 2387 2.303311 TGGATACCCAACATGAACGACA 59.697 45.455 0.00 0.00 40.09 4.35
2320 2388 2.980568 TGGATACCCAACATGAACGAC 58.019 47.619 0.00 0.00 40.09 4.34
2332 2400 3.329814 CCCCCAAACTAGTATGGATACCC 59.670 52.174 0.00 0.00 39.12 3.69
2333 2401 3.978672 ACCCCCAAACTAGTATGGATACC 59.021 47.826 0.00 0.00 39.12 2.73
2334 2402 6.328410 AGTTACCCCCAAACTAGTATGGATAC 59.672 42.308 0.00 0.00 39.12 2.24
2335 2403 6.328148 CAGTTACCCCCAAACTAGTATGGATA 59.672 42.308 0.00 0.00 39.12 2.59
2336 2404 5.132144 CAGTTACCCCCAAACTAGTATGGAT 59.868 44.000 0.00 0.00 39.12 3.41
2337 2405 4.472108 CAGTTACCCCCAAACTAGTATGGA 59.528 45.833 0.00 0.00 39.12 3.41
2338 2406 4.777463 CAGTTACCCCCAAACTAGTATGG 58.223 47.826 0.00 0.00 35.44 2.74
2339 2407 4.196971 GCAGTTACCCCCAAACTAGTATG 58.803 47.826 0.00 0.00 35.44 2.39
2340 2408 3.201487 GGCAGTTACCCCCAAACTAGTAT 59.799 47.826 0.00 0.00 35.44 2.12
2341 2409 2.573009 GGCAGTTACCCCCAAACTAGTA 59.427 50.000 0.00 0.00 35.44 1.82
2342 2410 1.353358 GGCAGTTACCCCCAAACTAGT 59.647 52.381 0.00 0.00 35.44 2.57
2343 2411 1.633945 AGGCAGTTACCCCCAAACTAG 59.366 52.381 0.00 0.00 35.44 2.57
2344 2412 1.750022 AGGCAGTTACCCCCAAACTA 58.250 50.000 0.00 0.00 35.44 2.24
2345 2413 1.750022 TAGGCAGTTACCCCCAAACT 58.250 50.000 0.00 0.00 37.67 2.66
2346 2414 2.559668 GTTTAGGCAGTTACCCCCAAAC 59.440 50.000 0.00 0.10 0.00 2.93
2347 2415 2.177233 TGTTTAGGCAGTTACCCCCAAA 59.823 45.455 0.00 0.00 0.00 3.28
2348 2416 1.781529 TGTTTAGGCAGTTACCCCCAA 59.218 47.619 0.00 0.00 0.00 4.12
2349 2417 1.447099 TGTTTAGGCAGTTACCCCCA 58.553 50.000 0.00 0.00 0.00 4.96
2350 2418 2.291346 ACATGTTTAGGCAGTTACCCCC 60.291 50.000 0.00 0.00 0.00 5.40
2351 2419 3.081710 ACATGTTTAGGCAGTTACCCC 57.918 47.619 0.00 0.00 0.00 4.95
2352 2420 5.462530 AAAACATGTTTAGGCAGTTACCC 57.537 39.130 23.53 0.00 31.63 3.69
2353 2421 6.859508 GTGTAAAACATGTTTAGGCAGTTACC 59.140 38.462 23.53 10.56 31.63 2.85
2354 2422 7.589954 CAGTGTAAAACATGTTTAGGCAGTTAC 59.410 37.037 23.53 18.70 31.63 2.50
2355 2423 7.499563 TCAGTGTAAAACATGTTTAGGCAGTTA 59.500 33.333 23.53 13.39 31.63 2.24
2356 2424 6.320164 TCAGTGTAAAACATGTTTAGGCAGTT 59.680 34.615 23.53 9.21 31.63 3.16
2357 2425 5.825679 TCAGTGTAAAACATGTTTAGGCAGT 59.174 36.000 23.53 19.62 31.63 4.40
2358 2426 6.312399 TCAGTGTAAAACATGTTTAGGCAG 57.688 37.500 23.53 12.37 31.63 4.85
2359 2427 6.095580 TGTTCAGTGTAAAACATGTTTAGGCA 59.904 34.615 23.53 18.14 30.73 4.75
2360 2428 6.500041 TGTTCAGTGTAAAACATGTTTAGGC 58.500 36.000 23.53 16.05 30.73 3.93
2361 2429 8.967218 CATTGTTCAGTGTAAAACATGTTTAGG 58.033 33.333 23.53 10.03 35.46 2.69
2362 2430 8.967218 CCATTGTTCAGTGTAAAACATGTTTAG 58.033 33.333 23.53 10.01 35.46 1.85
2363 2431 7.923344 CCCATTGTTCAGTGTAAAACATGTTTA 59.077 33.333 23.53 6.21 35.46 2.01
2364 2432 6.760770 CCCATTGTTCAGTGTAAAACATGTTT 59.239 34.615 18.13 18.13 35.46 2.83
2365 2433 6.097554 TCCCATTGTTCAGTGTAAAACATGTT 59.902 34.615 4.92 4.92 35.46 2.71
2366 2434 5.596361 TCCCATTGTTCAGTGTAAAACATGT 59.404 36.000 0.00 0.00 35.46 3.21
2367 2435 5.920273 GTCCCATTGTTCAGTGTAAAACATG 59.080 40.000 0.00 0.00 35.46 3.21
2368 2436 5.010617 GGTCCCATTGTTCAGTGTAAAACAT 59.989 40.000 0.00 0.00 35.46 2.71
2369 2437 4.339814 GGTCCCATTGTTCAGTGTAAAACA 59.660 41.667 0.00 0.00 33.74 2.83
2370 2438 4.583073 AGGTCCCATTGTTCAGTGTAAAAC 59.417 41.667 0.00 0.00 0.00 2.43
2371 2439 4.798882 AGGTCCCATTGTTCAGTGTAAAA 58.201 39.130 0.00 0.00 0.00 1.52
2372 2440 4.394729 GAGGTCCCATTGTTCAGTGTAAA 58.605 43.478 0.00 0.00 0.00 2.01
2373 2441 3.556213 CGAGGTCCCATTGTTCAGTGTAA 60.556 47.826 0.00 0.00 0.00 2.41
2374 2442 2.028476 CGAGGTCCCATTGTTCAGTGTA 60.028 50.000 0.00 0.00 0.00 2.90
2375 2443 1.270839 CGAGGTCCCATTGTTCAGTGT 60.271 52.381 0.00 0.00 0.00 3.55
2376 2444 1.270839 ACGAGGTCCCATTGTTCAGTG 60.271 52.381 0.00 0.00 0.00 3.66
2377 2445 1.002087 GACGAGGTCCCATTGTTCAGT 59.998 52.381 0.00 0.00 0.00 3.41
2378 2446 1.001974 TGACGAGGTCCCATTGTTCAG 59.998 52.381 0.00 0.00 0.00 3.02
2379 2447 1.052617 TGACGAGGTCCCATTGTTCA 58.947 50.000 0.00 0.00 0.00 3.18
2380 2448 2.280628 GATGACGAGGTCCCATTGTTC 58.719 52.381 0.00 0.00 0.00 3.18
2381 2449 1.065418 GGATGACGAGGTCCCATTGTT 60.065 52.381 0.00 0.00 0.00 2.83
2382 2450 0.541863 GGATGACGAGGTCCCATTGT 59.458 55.000 0.00 0.00 0.00 2.71
2383 2451 0.541392 TGGATGACGAGGTCCCATTG 59.459 55.000 0.00 0.00 33.45 2.82
2384 2452 0.541863 GTGGATGACGAGGTCCCATT 59.458 55.000 0.00 0.00 33.45 3.16
2385 2453 0.325671 AGTGGATGACGAGGTCCCAT 60.326 55.000 0.00 0.00 33.45 4.00
2386 2454 0.544357 AAGTGGATGACGAGGTCCCA 60.544 55.000 0.00 0.00 33.45 4.37
2387 2455 0.175989 GAAGTGGATGACGAGGTCCC 59.824 60.000 0.00 0.00 33.45 4.46
2388 2456 0.895530 TGAAGTGGATGACGAGGTCC 59.104 55.000 0.00 0.00 35.02 4.46
2389 2457 2.743636 TTGAAGTGGATGACGAGGTC 57.256 50.000 0.00 0.00 0.00 3.85
2390 2458 4.223032 AGTTATTGAAGTGGATGACGAGGT 59.777 41.667 0.00 0.00 0.00 3.85
2391 2459 4.568359 CAGTTATTGAAGTGGATGACGAGG 59.432 45.833 0.00 0.00 33.05 4.63
2392 2460 5.171476 ACAGTTATTGAAGTGGATGACGAG 58.829 41.667 0.00 0.00 39.90 4.18
2393 2461 5.147330 ACAGTTATTGAAGTGGATGACGA 57.853 39.130 0.00 0.00 39.90 4.20
2394 2462 5.862924 AACAGTTATTGAAGTGGATGACG 57.137 39.130 0.00 0.00 39.90 4.35
2395 2463 8.999431 TCTTTAACAGTTATTGAAGTGGATGAC 58.001 33.333 0.00 0.00 39.90 3.06
2396 2464 9.219603 CTCTTTAACAGTTATTGAAGTGGATGA 57.780 33.333 0.00 0.00 39.90 2.92
2397 2465 9.003658 ACTCTTTAACAGTTATTGAAGTGGATG 57.996 33.333 0.00 0.00 39.90 3.51
2399 2467 9.706691 CTACTCTTTAACAGTTATTGAAGTGGA 57.293 33.333 0.00 0.00 39.90 4.02
2400 2468 9.490379 ACTACTCTTTAACAGTTATTGAAGTGG 57.510 33.333 0.00 1.74 39.90 4.00
2449 2517 9.807649 GACATCATAAGGTAAAGCAAAATCAAT 57.192 29.630 0.00 0.00 0.00 2.57
2450 2518 7.967854 CGACATCATAAGGTAAAGCAAAATCAA 59.032 33.333 0.00 0.00 0.00 2.57
2451 2519 7.335673 TCGACATCATAAGGTAAAGCAAAATCA 59.664 33.333 0.00 0.00 0.00 2.57
2452 2520 7.693952 TCGACATCATAAGGTAAAGCAAAATC 58.306 34.615 0.00 0.00 0.00 2.17
2453 2521 7.336931 ACTCGACATCATAAGGTAAAGCAAAAT 59.663 33.333 0.00 0.00 0.00 1.82
2454 2522 6.653320 ACTCGACATCATAAGGTAAAGCAAAA 59.347 34.615 0.00 0.00 0.00 2.44
2455 2523 6.170506 ACTCGACATCATAAGGTAAAGCAAA 58.829 36.000 0.00 0.00 0.00 3.68
2456 2524 5.730550 ACTCGACATCATAAGGTAAAGCAA 58.269 37.500 0.00 0.00 0.00 3.91
2457 2525 5.339008 ACTCGACATCATAAGGTAAAGCA 57.661 39.130 0.00 0.00 0.00 3.91
2458 2526 5.006746 CCAACTCGACATCATAAGGTAAAGC 59.993 44.000 0.00 0.00 0.00 3.51
2482 2550 3.813166 TCCTTCAACGATCCAAAGTTCAC 59.187 43.478 0.00 0.00 0.00 3.18
2490 2558 4.610605 TTACACTTCCTTCAACGATCCA 57.389 40.909 0.00 0.00 0.00 3.41
2512 2580 8.375493 ACTGACTATAATTTAGGTTGAGGTCA 57.625 34.615 0.00 0.00 0.00 4.02
2562 2630 5.244851 AGAGCATAGAAACTGTCTCAAGTCA 59.755 40.000 0.00 0.00 37.84 3.41
2619 2687 1.001520 TGTCGCCTGCTAAAGTGCTAA 59.998 47.619 0.00 0.00 0.00 3.09
2620 2688 0.606096 TGTCGCCTGCTAAAGTGCTA 59.394 50.000 0.00 0.00 0.00 3.49
2621 2689 0.036010 ATGTCGCCTGCTAAAGTGCT 60.036 50.000 0.00 0.00 0.00 4.40
2622 2690 0.097674 CATGTCGCCTGCTAAAGTGC 59.902 55.000 0.00 0.00 0.00 4.40
2623 2691 1.725641 TCATGTCGCCTGCTAAAGTG 58.274 50.000 0.00 0.00 0.00 3.16
2624 2692 2.283298 CATCATGTCGCCTGCTAAAGT 58.717 47.619 0.00 0.00 0.00 2.66
2625 2693 2.031314 CACATCATGTCGCCTGCTAAAG 59.969 50.000 0.00 0.00 0.00 1.85
2626 2694 2.009051 CACATCATGTCGCCTGCTAAA 58.991 47.619 0.00 0.00 0.00 1.85
2694 2809 9.195411 GTGACAATCAAAGCATTCATTTAAGAA 57.805 29.630 0.00 0.00 0.00 2.52
2704 2819 9.661563 AATATCATTTGTGACAATCAAAGCATT 57.338 25.926 0.00 0.00 38.02 3.56
2754 2871 9.439537 GCTACAAGAGTAACTTTTTGAAAGAAG 57.560 33.333 7.37 0.00 36.61 2.85
2768 2886 5.796935 GTGAAATCGTACGCTACAAGAGTAA 59.203 40.000 11.24 0.00 32.45 2.24
2777 2895 6.415867 GCTATACAAAGTGAAATCGTACGCTA 59.584 38.462 11.24 0.00 0.00 4.26
2780 2898 6.563398 TGCTATACAAAGTGAAATCGTACG 57.437 37.500 9.53 9.53 0.00 3.67
2785 2903 9.455847 GAAATCCATGCTATACAAAGTGAAATC 57.544 33.333 0.00 0.00 0.00 2.17
2803 2921 4.091549 AGTGTCCAAAGCATGAAATCCAT 58.908 39.130 0.00 0.00 35.44 3.41
2812 2930 3.056607 GCATTACCAAGTGTCCAAAGCAT 60.057 43.478 0.00 0.00 0.00 3.79
2817 2935 5.543507 AAAATGCATTACCAAGTGTCCAA 57.456 34.783 13.39 0.00 0.00 3.53
2820 2938 7.437862 TGAAAGAAAAATGCATTACCAAGTGTC 59.562 33.333 13.39 0.26 0.00 3.67
2827 2945 5.578336 GCTCCTGAAAGAAAAATGCATTACC 59.422 40.000 13.39 5.01 34.07 2.85
2902 3020 1.565067 TCTCAATCCTCTGCTGAGCA 58.435 50.000 14.75 7.05 38.93 4.26
2928 3046 4.195416 CCTCAACTTCTTTATCAGCTCCC 58.805 47.826 0.00 0.00 0.00 4.30
2929 3047 4.195416 CCCTCAACTTCTTTATCAGCTCC 58.805 47.826 0.00 0.00 0.00 4.70
2958 3076 9.042450 TCAGGGAACAGATCTTAAGTTGTTATA 57.958 33.333 16.76 0.00 34.18 0.98
3005 3123 7.147312 CCTGTTTTTATTTGCAGAGATCAACA 58.853 34.615 0.00 0.00 0.00 3.33
3024 3142 4.729868 AGATCAAGTACCTTTGCCTGTTT 58.270 39.130 0.00 0.00 0.00 2.83
3143 3261 3.954258 AGAAACCATTATTAGCACTGGCC 59.046 43.478 0.00 0.00 42.56 5.36
3241 3359 0.391597 GGTCACCTGGTTCGACTGAA 59.608 55.000 14.69 0.00 0.00 3.02
3295 3413 6.255020 CACATCTGCAATCTTTATTTCAAGGC 59.745 38.462 0.00 0.00 0.00 4.35
3346 3464 0.028902 GGCGGGACATTTTATCGTGC 59.971 55.000 0.00 0.00 0.00 5.34
3374 3492 5.775686 TCCGAAGTGTAATCATTATACCCG 58.224 41.667 0.86 5.49 0.00 5.28
3394 3512 3.116300 CTGGACTGATTTCGTGTATCCG 58.884 50.000 0.00 0.00 0.00 4.18
3403 3521 1.728971 CACAGCGACTGGACTGATTTC 59.271 52.381 10.80 0.00 37.35 2.17
3509 3627 6.071728 CCTGAAATGTTGATTTTCCAGTAGCT 60.072 38.462 0.00 0.00 31.58 3.32
3537 3655 6.707440 TTGCAGTTTGGTCTTCATAAGAAA 57.293 33.333 0.00 0.00 39.67 2.52
3614 3732 7.040478 CCACCAATTGTCAGTGATTCTTTCTTA 60.040 37.037 13.07 0.00 33.21 2.10
3795 3915 7.418025 GGTTGCTAAGTACAGGAGATTGAGTAT 60.418 40.741 0.00 0.00 0.00 2.12
3895 4016 1.912763 GCCCTTGGACCATTTGCCA 60.913 57.895 0.00 0.00 0.00 4.92
3925 4046 2.277084 GTGTTTGCACCTAGATACCCG 58.723 52.381 0.00 0.00 39.61 5.28
4010 4131 3.202001 CGCGAACCGGCCATGATT 61.202 61.111 0.00 0.00 0.00 2.57
4025 4146 0.235926 GAGCTTGTTGAACTCACCGC 59.764 55.000 0.00 0.00 0.00 5.68
4035 4156 1.534595 GAACCTGAGCTGAGCTTGTTG 59.465 52.381 18.30 7.45 39.88 3.33
4061 4187 2.250939 CCGCTTTTGCTGTCCGACA 61.251 57.895 0.29 0.29 44.80 4.35
4139 4265 0.253044 GCCACAATGCTGGAGTCCTA 59.747 55.000 11.33 0.00 32.30 2.94
4180 4306 1.133809 AGACTGCCCACCTTTGCCTA 61.134 55.000 0.00 0.00 0.00 3.93
4200 4326 5.546526 CTTCTCAAAGAAGTGCTCTAGGTT 58.453 41.667 8.27 0.00 45.03 3.50
4241 4367 1.527034 TGCATTCTCAGTTGGAGCAC 58.473 50.000 0.00 0.00 43.70 4.40
4242 4368 2.089201 CATGCATTCTCAGTTGGAGCA 58.911 47.619 0.00 0.00 43.70 4.26
4243 4369 2.089980 ACATGCATTCTCAGTTGGAGC 58.910 47.619 0.00 0.00 43.70 4.70
4244 4370 3.504906 ACAACATGCATTCTCAGTTGGAG 59.495 43.478 23.13 6.50 42.73 3.86
4248 4374 3.005050 CACCACAACATGCATTCTCAGTT 59.995 43.478 0.00 0.00 0.00 3.16
4268 4395 1.181098 AGGCAGTGGCACCATTTCAC 61.181 55.000 20.04 0.00 43.71 3.18
4361 4513 2.027192 TCCAACCTCTAACATCACTGGC 60.027 50.000 0.00 0.00 0.00 4.85
4398 4550 2.872858 GGGATTCAGGCGTCTCAAATAC 59.127 50.000 0.00 0.00 0.00 1.89
4467 4627 2.992543 CAAATAAACAATGCCACCGTGG 59.007 45.455 13.71 13.71 41.55 4.94
4612 4772 3.216187 TGATCCCAAAAGTGAACCGAA 57.784 42.857 0.00 0.00 0.00 4.30
4720 4880 6.270927 CAGGATGGGAATTAAGTCTGAGGATA 59.729 42.308 2.56 0.00 0.00 2.59
4723 4883 4.712476 CAGGATGGGAATTAAGTCTGAGG 58.288 47.826 2.56 0.00 0.00 3.86
4724 4884 4.133078 GCAGGATGGGAATTAAGTCTGAG 58.867 47.826 2.56 0.00 35.86 3.35
4759 4919 7.502226 TCACACAGAAGAATACAGAAACCAAAT 59.498 33.333 0.00 0.00 0.00 2.32
4761 4921 6.353323 TCACACAGAAGAATACAGAAACCAA 58.647 36.000 0.00 0.00 0.00 3.67
4780 4940 7.648142 TCATGTTATCCTTTGTTTTCTCACAC 58.352 34.615 0.00 0.00 0.00 3.82
4791 4951 7.120285 CCAGGCTGTATATCATGTTATCCTTTG 59.880 40.741 14.43 0.00 0.00 2.77
4830 5035 2.224305 CGTCTCCAGAAAAACCACCTCT 60.224 50.000 0.00 0.00 0.00 3.69
4852 5058 0.752743 ATGATTGGGCCGTGTCATGG 60.753 55.000 14.78 6.73 30.61 3.66
4854 5060 0.255604 TCATGATTGGGCCGTGTCAT 59.744 50.000 11.05 11.05 0.00 3.06
4860 5066 1.143838 TCTCGTCATGATTGGGCCG 59.856 57.895 0.00 0.00 0.00 6.13
4864 5070 1.662629 GCAGTGTCTCGTCATGATTGG 59.337 52.381 0.00 0.00 0.00 3.16
4945 5151 5.182169 AGTTGAGCACCTACTAGTAGAGT 57.818 43.478 28.07 20.65 42.69 3.24
4946 5152 5.883673 AGAAGTTGAGCACCTACTAGTAGAG 59.116 44.000 28.07 20.51 35.21 2.43
4947 5153 5.817784 AGAAGTTGAGCACCTACTAGTAGA 58.182 41.667 28.07 7.02 35.21 2.59
4948 5154 7.049133 TCTAGAAGTTGAGCACCTACTAGTAG 58.951 42.308 21.11 21.11 30.77 2.57
4949 5155 6.955364 TCTAGAAGTTGAGCACCTACTAGTA 58.045 40.000 1.89 1.89 30.77 1.82
4950 5156 5.817784 TCTAGAAGTTGAGCACCTACTAGT 58.182 41.667 0.00 0.00 30.77 2.57
4951 5157 6.016610 GGATCTAGAAGTTGAGCACCTACTAG 60.017 46.154 0.00 0.00 30.77 2.57
4952 5158 5.828859 GGATCTAGAAGTTGAGCACCTACTA 59.171 44.000 0.00 0.00 30.77 1.82
4953 5159 4.647399 GGATCTAGAAGTTGAGCACCTACT 59.353 45.833 0.00 0.00 32.27 2.57
4954 5160 4.402793 TGGATCTAGAAGTTGAGCACCTAC 59.597 45.833 0.00 0.00 0.00 3.18
4955 5161 4.402793 GTGGATCTAGAAGTTGAGCACCTA 59.597 45.833 0.00 0.00 0.00 3.08
4956 5162 3.196685 GTGGATCTAGAAGTTGAGCACCT 59.803 47.826 0.00 0.00 0.00 4.00
4957 5163 3.196685 AGTGGATCTAGAAGTTGAGCACC 59.803 47.826 0.00 0.00 0.00 5.01
4958 5164 4.081972 TCAGTGGATCTAGAAGTTGAGCAC 60.082 45.833 0.00 0.00 0.00 4.40
4959 5165 4.089361 TCAGTGGATCTAGAAGTTGAGCA 58.911 43.478 0.00 0.00 0.00 4.26
4960 5166 4.727507 TCAGTGGATCTAGAAGTTGAGC 57.272 45.455 0.00 0.00 0.00 4.26
4961 5167 7.821359 TCATTTTCAGTGGATCTAGAAGTTGAG 59.179 37.037 0.00 0.00 0.00 3.02
4962 5168 7.679783 TCATTTTCAGTGGATCTAGAAGTTGA 58.320 34.615 0.00 0.00 0.00 3.18
4963 5169 7.912056 TCATTTTCAGTGGATCTAGAAGTTG 57.088 36.000 0.00 0.00 0.00 3.16
4964 5170 8.105829 ACATCATTTTCAGTGGATCTAGAAGTT 58.894 33.333 0.00 0.00 0.00 2.66
4965 5171 7.628234 ACATCATTTTCAGTGGATCTAGAAGT 58.372 34.615 0.00 0.00 0.00 3.01
4966 5172 8.503458 AACATCATTTTCAGTGGATCTAGAAG 57.497 34.615 0.00 0.00 0.00 2.85
4967 5173 8.868522 AAACATCATTTTCAGTGGATCTAGAA 57.131 30.769 0.00 0.00 0.00 2.10
4968 5174 9.605275 CTAAACATCATTTTCAGTGGATCTAGA 57.395 33.333 0.00 0.00 0.00 2.43
4969 5175 9.388506 ACTAAACATCATTTTCAGTGGATCTAG 57.611 33.333 0.00 0.00 0.00 2.43
4970 5176 9.166173 CACTAAACATCATTTTCAGTGGATCTA 57.834 33.333 0.00 0.00 0.00 1.98
4987 5193 8.368668 AGTAGAGTGTAGCTTTTCACTAAACAT 58.631 33.333 15.37 6.12 43.64 2.71
5000 5206 8.422566 AGTTAAAGACAAAAGTAGAGTGTAGCT 58.577 33.333 0.00 0.00 0.00 3.32
5011 5217 6.374333 TGTGCTTCTGAGTTAAAGACAAAAGT 59.626 34.615 0.00 0.00 0.00 2.66
5012 5218 6.688813 GTGTGCTTCTGAGTTAAAGACAAAAG 59.311 38.462 0.00 0.00 0.00 2.27
5013 5219 6.150307 TGTGTGCTTCTGAGTTAAAGACAAAA 59.850 34.615 0.00 0.00 0.00 2.44
5103 5312 1.963515 GCCAAAAGAGAGGGCAAAAGA 59.036 47.619 0.00 0.00 46.92 2.52
5113 5322 4.648762 TCCTGTCAAAAATGCCAAAAGAGA 59.351 37.500 0.00 0.00 0.00 3.10
5147 5356 7.162761 TGGTAACACGGATGAAAATCTCTTAA 58.837 34.615 0.00 0.00 46.17 1.85
5196 5405 9.105844 ACTCCTATCCAGTAGTGCAAATATATT 57.894 33.333 0.00 0.00 0.00 1.28
5200 5409 9.769677 ATATACTCCTATCCAGTAGTGCAAATA 57.230 33.333 0.00 0.00 29.82 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.