Multiple sequence alignment - TraesCS7A01G303200

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BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G303200 chr7A 100.000 8635 0 0 1 8635 425791198 425782564 0.000000e+00 15946.0
1 TraesCS7A01G303200 chr7A 91.821 2274 171 8 2044 4312 567517409 567519672 0.000000e+00 3155.0
2 TraesCS7A01G303200 chr7A 83.983 231 35 2 867 1096 425777748 425777519 4.060000e-53 220.0
3 TraesCS7A01G303200 chr7A 97.581 124 3 0 1515 1638 593450831 593450708 6.790000e-51 213.0
4 TraesCS7A01G303200 chr7A 91.549 71 4 2 1642 1711 42966046 42965977 7.140000e-16 97.1
5 TraesCS7A01G303200 chr7A 95.000 40 2 0 1403 1442 116122595 116122556 7.240000e-06 63.9
6 TraesCS7A01G303200 chr7B 97.791 3983 68 14 4659 8635 372831084 372827116 0.000000e+00 6850.0
7 TraesCS7A01G303200 chr7B 96.361 1539 33 4 1 1517 372832952 372831415 0.000000e+00 2510.0
8 TraesCS7A01G303200 chr7B 97.778 360 8 0 4312 4671 137463051 137463410 9.520000e-174 621.0
9 TraesCS7A01G303200 chr7B 97.746 355 7 1 4312 4665 720994382 720994736 2.060000e-170 610.0
10 TraesCS7A01G303200 chr7B 97.516 322 7 1 1705 2025 372831413 372831092 4.560000e-152 549.0
11 TraesCS7A01G303200 chr7B 90.654 214 14 3 7898 8105 607618021 607617808 6.600000e-71 279.0
12 TraesCS7A01G303200 chr7B 90.278 216 14 4 7901 8110 162834745 162834531 8.540000e-70 276.0
13 TraesCS7A01G303200 chr7B 86.070 201 28 0 896 1096 372823892 372823692 5.250000e-52 217.0
14 TraesCS7A01G303200 chr7B 93.151 73 2 3 1642 1712 103393887 103393816 4.260000e-18 104.0
15 TraesCS7A01G303200 chr7B 82.432 74 12 1 1415 1487 724956448 724956375 7.240000e-06 63.9
16 TraesCS7A01G303200 chr7D 98.212 3299 45 9 4659 7950 378172288 378168997 0.000000e+00 5753.0
17 TraesCS7A01G303200 chr7D 91.881 2217 159 12 2045 4250 595076426 595074220 0.000000e+00 3077.0
18 TraesCS7A01G303200 chr7D 96.244 1544 32 5 1 1519 378174159 378172617 0.000000e+00 2507.0
19 TraesCS7A01G303200 chr7D 96.527 691 20 4 7946 8635 378163855 378163168 0.000000e+00 1140.0
20 TraesCS7A01G303200 chr7D 97.523 323 7 1 1704 2025 378172618 378172296 1.270000e-152 551.0
21 TraesCS7A01G303200 chr7D 86.070 201 28 0 896 1096 378160019 378159819 5.250000e-52 217.0
22 TraesCS7A01G303200 chr7D 89.333 75 4 4 1642 1714 394066491 394066563 3.320000e-14 91.6
23 TraesCS7A01G303200 chr1D 93.375 2264 140 8 2045 4300 98830445 98832706 0.000000e+00 3341.0
24 TraesCS7A01G303200 chr1D 98.841 345 4 0 4312 4656 333498324 333497980 4.430000e-172 616.0
25 TraesCS7A01G303200 chr1D 90.498 221 14 6 7892 8106 419718270 419718489 1.420000e-72 285.0
26 TraesCS7A01G303200 chr1D 89.671 213 16 3 7900 8106 419720470 419720682 5.140000e-67 267.0
27 TraesCS7A01G303200 chr1D 95.902 122 5 0 1517 1638 90518862 90518741 1.900000e-46 198.0
28 TraesCS7A01G303200 chr1D 95.868 121 5 0 1518 1638 44666256 44666136 6.840000e-46 196.0
29 TraesCS7A01G303200 chr1D 95.868 121 5 0 1518 1638 44694251 44694131 6.840000e-46 196.0
30 TraesCS7A01G303200 chr1D 95.868 121 5 0 1518 1638 119306421 119306301 6.840000e-46 196.0
31 TraesCS7A01G303200 chr1D 95.161 124 6 0 1515 1638 158107644 158107767 6.840000e-46 196.0
32 TraesCS7A01G303200 chr1D 95.161 124 6 0 1515 1638 237439276 237439399 6.840000e-46 196.0
33 TraesCS7A01G303200 chr1D 93.893 131 7 1 1508 1638 336556670 336556799 6.840000e-46 196.0
34 TraesCS7A01G303200 chr1D 96.610 59 0 2 1642 1698 94050708 94050650 7.140000e-16 97.1
35 TraesCS7A01G303200 chr1D 96.610 59 0 2 1642 1698 170824316 170824258 7.140000e-16 97.1
36 TraesCS7A01G303200 chr1D 98.182 55 1 0 1642 1696 355175824 355175770 7.140000e-16 97.1
37 TraesCS7A01G303200 chr1D 96.552 58 0 2 1642 1697 24119651 24119708 2.570000e-15 95.3
38 TraesCS7A01G303200 chr1D 95.000 60 2 1 1642 1701 114006273 114006331 9.230000e-15 93.5
39 TraesCS7A01G303200 chr1D 97.222 36 1 0 1452 1487 319565753 319565718 2.600000e-05 62.1
40 TraesCS7A01G303200 chr5B 92.870 2272 148 8 2045 4315 330742288 330740030 0.000000e+00 3286.0
41 TraesCS7A01G303200 chr5B 85.780 218 21 5 7898 8106 508292005 508291789 1.130000e-53 222.0
42 TraesCS7A01G303200 chr5B 98.347 121 2 0 1518 1638 560436744 560436864 6.790000e-51 213.0
43 TraesCS7A01G303200 chr5B 96.667 60 0 2 1642 1699 433527354 433527413 1.980000e-16 99.0
44 TraesCS7A01G303200 chr5B 79.787 94 11 3 1394 1486 43927959 43928045 2.600000e-05 62.1
45 TraesCS7A01G303200 chr2D 92.679 2281 139 11 2044 4311 376694220 376696485 0.000000e+00 3262.0
46 TraesCS7A01G303200 chr2D 92.440 2156 140 9 2045 4194 361254339 361252201 0.000000e+00 3057.0
47 TraesCS7A01G303200 chr2D 98.413 126 2 0 1513 1638 300887312 300887437 1.130000e-53 222.0
48 TraesCS7A01G303200 chr2D 96.899 129 4 0 1510 1638 62293289 62293417 5.250000e-52 217.0
49 TraesCS7A01G303200 chr2D 97.581 124 3 0 1515 1638 525904955 525904832 6.790000e-51 213.0
50 TraesCS7A01G303200 chr6A 92.120 2297 148 17 2032 4317 114231261 114233535 0.000000e+00 3208.0
51 TraesCS7A01G303200 chr6A 96.124 129 4 1 1510 1638 330471329 330471202 8.780000e-50 209.0
52 TraesCS7A01G303200 chr6A 97.059 102 2 1 4218 4318 294642376 294642477 4.140000e-38 171.0
53 TraesCS7A01G303200 chr5A 91.312 2302 164 19 2043 4311 455864555 455862257 0.000000e+00 3110.0
54 TraesCS7A01G303200 chr5A 98.286 350 6 0 4312 4661 315501157 315500808 1.590000e-171 614.0
55 TraesCS7A01G303200 chr6B 91.129 2277 186 14 2045 4311 626888075 626890345 0.000000e+00 3072.0
56 TraesCS7A01G303200 chr6B 88.639 1558 161 11 2763 4318 622643183 622644726 0.000000e+00 1882.0
57 TraesCS7A01G303200 chr6B 95.238 63 1 2 1642 1704 194434924 194434864 1.980000e-16 99.0
58 TraesCS7A01G303200 chr6B 90.541 74 5 2 1642 1713 474648236 474648163 7.140000e-16 97.1
59 TraesCS7A01G303200 chr6B 97.368 38 1 0 1451 1488 458576542 458576505 2.010000e-06 65.8
60 TraesCS7A01G303200 chr3B 90.751 2303 183 12 2041 4318 408360493 408362790 0.000000e+00 3046.0
61 TraesCS7A01G303200 chr3B 98.563 348 5 0 4312 4659 353864946 353864599 4.430000e-172 616.0
62 TraesCS7A01G303200 chr3B 96.774 62 0 2 1642 1701 785132436 785132375 1.530000e-17 102.0
63 TraesCS7A01G303200 chr4D 91.756 2062 163 7 2045 4103 36535500 36533443 0.000000e+00 2859.0
64 TraesCS7A01G303200 chr4D 86.319 307 25 14 4026 4317 260721040 260720736 1.400000e-82 318.0
65 TraesCS7A01G303200 chr4D 89.767 215 16 5 7898 8106 372182186 372182400 3.970000e-68 270.0
66 TraesCS7A01G303200 chr4D 75.382 654 110 32 3687 4317 509029778 509029153 1.430000e-67 268.0
67 TraesCS7A01G303200 chr4D 97.581 124 3 0 1515 1638 36413364 36413241 6.790000e-51 213.0
68 TraesCS7A01G303200 chr4D 96.694 121 4 0 1518 1638 197022052 197021932 1.470000e-47 202.0
69 TraesCS7A01G303200 chr4D 95.935 123 5 0 1516 1638 291740590 291740468 5.290000e-47 200.0
70 TraesCS7A01G303200 chr4D 95.122 123 6 0 1516 1638 235496530 235496652 2.460000e-45 195.0
71 TraesCS7A01G303200 chr4D 95.082 122 6 0 1517 1638 15801150 15801029 8.850000e-45 193.0
72 TraesCS7A01G303200 chr4D 95.082 122 6 0 1517 1638 30403332 30403453 8.850000e-45 193.0
73 TraesCS7A01G303200 chr4D 95.082 122 6 0 1517 1638 221527557 221527436 8.850000e-45 193.0
74 TraesCS7A01G303200 chr4D 94.400 125 7 0 1514 1638 492804279 492804403 8.850000e-45 193.0
75 TraesCS7A01G303200 chr4D 94.355 124 7 0 1515 1638 51707706 51707829 3.180000e-44 191.0
76 TraesCS7A01G303200 chr4D 96.610 59 0 2 1641 1697 71831457 71831399 7.140000e-16 97.1
77 TraesCS7A01G303200 chr4D 92.647 68 3 2 1642 1709 439678695 439678760 7.140000e-16 97.1
78 TraesCS7A01G303200 chr4D 96.552 58 0 2 1642 1697 10263585 10263528 2.570000e-15 95.3
79 TraesCS7A01G303200 chr4D 96.552 58 0 2 1642 1697 43328534 43328591 2.570000e-15 95.3
80 TraesCS7A01G303200 chr4D 96.552 58 0 2 1642 1697 122964441 122964498 2.570000e-15 95.3
81 TraesCS7A01G303200 chr4D 96.552 58 0 2 1642 1697 173574922 173574979 2.570000e-15 95.3
82 TraesCS7A01G303200 chr4D 96.552 58 0 2 1642 1697 195030593 195030650 2.570000e-15 95.3
83 TraesCS7A01G303200 chr4D 96.552 58 0 2 1642 1697 230916514 230916571 2.570000e-15 95.3
84 TraesCS7A01G303200 chr4D 96.552 58 0 2 1642 1697 248937763 248937706 2.570000e-15 95.3
85 TraesCS7A01G303200 chr4D 97.222 36 1 0 1452 1487 261053113 261053148 2.600000e-05 62.1
86 TraesCS7A01G303200 chr4D 94.444 36 2 0 1452 1487 261075540 261075575 1.000000e-03 56.5
87 TraesCS7A01G303200 chrUn 100.000 387 0 0 6441 6827 480515477 480515863 0.000000e+00 715.0
88 TraesCS7A01G303200 chrUn 92.661 218 8 6 7897 8106 10263768 10263985 3.030000e-79 307.0
89 TraesCS7A01G303200 chrUn 96.000 125 5 0 1514 1638 66416539 66416415 4.090000e-48 204.0
90 TraesCS7A01G303200 chrUn 95.902 122 5 0 1517 1638 11761400 11761521 1.900000e-46 198.0
91 TraesCS7A01G303200 chrUn 94.444 126 7 0 1513 1638 11031791 11031666 2.460000e-45 195.0
92 TraesCS7A01G303200 chrUn 95.122 123 6 0 1516 1638 27078760 27078882 2.460000e-45 195.0
93 TraesCS7A01G303200 chrUn 96.552 58 1 1 1642 1699 12159821 12159877 2.570000e-15 95.3
94 TraesCS7A01G303200 chr4B 98.567 349 5 0 4312 4660 306604664 306604316 1.230000e-172 617.0
95 TraesCS7A01G303200 chr4B 90.187 214 15 5 7899 8106 456917108 456917321 3.070000e-69 274.0
96 TraesCS7A01G303200 chr4B 98.347 121 2 0 1518 1638 340640644 340640764 6.790000e-51 213.0
97 TraesCS7A01G303200 chr4B 98.246 57 1 0 1642 1698 17187873 17187929 5.520000e-17 100.0
98 TraesCS7A01G303200 chr4B 98.246 57 1 0 1642 1698 144406239 144406183 5.520000e-17 100.0
99 TraesCS7A01G303200 chr4B 98.246 57 0 1 1642 1697 24634482 24634426 1.980000e-16 99.0
100 TraesCS7A01G303200 chr4B 96.667 60 0 2 1642 1699 541160022 541160081 1.980000e-16 99.0
101 TraesCS7A01G303200 chr4B 98.214 56 1 0 1642 1697 564448149 564448204 1.980000e-16 99.0
102 TraesCS7A01G303200 chr4B 94.030 67 0 4 1642 1706 568809566 568809502 1.980000e-16 99.0
103 TraesCS7A01G303200 chr4B 90.667 75 4 3 1642 1716 199928647 199928718 7.140000e-16 97.1
104 TraesCS7A01G303200 chr4B 93.846 65 2 2 1642 1704 322760148 322760084 7.140000e-16 97.1
105 TraesCS7A01G303200 chr4B 93.846 65 1 3 1642 1704 494225824 494225761 2.570000e-15 95.3
106 TraesCS7A01G303200 chr4B 92.537 67 4 1 7897 7962 645330102 645330168 2.570000e-15 95.3
107 TraesCS7A01G303200 chr4B 90.698 43 3 1 1400 1441 666667009 666666967 1.000000e-03 56.5
108 TraesCS7A01G303200 chr4B 90.698 43 3 1 1400 1441 666703624 666703582 1.000000e-03 56.5
109 TraesCS7A01G303200 chr4B 100.000 28 0 0 1462 1489 526951381 526951354 1.600000e-02 52.8
110 TraesCS7A01G303200 chr3A 98.844 346 4 0 4312 4657 631290022 631289677 1.230000e-172 617.0
111 TraesCS7A01G303200 chr3A 94.030 67 2 2 1642 1706 135120318 135120252 5.520000e-17 100.0
112 TraesCS7A01G303200 chr3A 97.222 36 1 0 1452 1487 6681294 6681329 2.600000e-05 62.1
113 TraesCS7A01G303200 chr3A 94.737 38 2 0 1451 1488 581608167 581608130 9.360000e-05 60.2
114 TraesCS7A01G303200 chr4A 97.500 360 9 0 4312 4671 450790422 450790063 4.430000e-172 616.0
115 TraesCS7A01G303200 chr4A 92.754 69 4 1 1642 1710 452573895 452573828 1.980000e-16 99.0
116 TraesCS7A01G303200 chr4A 81.176 85 6 4 1403 1487 621122373 621122299 9.360000e-05 60.2
117 TraesCS7A01G303200 chr1A 97.245 363 9 1 4312 4673 45799865 45800227 1.590000e-171 614.0
118 TraesCS7A01G303200 chr1A 91.549 71 2 4 1642 1709 52719851 52719782 2.570000e-15 95.3
119 TraesCS7A01G303200 chr5D 93.003 343 19 4 3978 4318 470754342 470754003 6.020000e-136 496.0
120 TraesCS7A01G303200 chr5D 87.793 213 18 4 7900 8106 540243382 540243172 8.660000e-60 243.0
121 TraesCS7A01G303200 chr5D 98.361 122 2 0 1517 1638 241844077 241844198 1.890000e-51 215.0
122 TraesCS7A01G303200 chr5D 97.541 122 3 0 1517 1638 115924649 115924528 8.780000e-50 209.0
123 TraesCS7A01G303200 chr5D 91.429 70 4 2 1642 1709 277243155 277243086 2.570000e-15 95.3
124 TraesCS7A01G303200 chr5D 100.000 49 0 0 8058 8106 78014742 78014694 3.320000e-14 91.6
125 TraesCS7A01G303200 chr5D 94.595 37 2 0 1451 1487 41760720 41760756 3.370000e-04 58.4
126 TraesCS7A01G303200 chr5D 100.000 30 0 0 1459 1488 435474715 435474744 1.000000e-03 56.5
127 TraesCS7A01G303200 chr6D 90.837 251 16 3 4069 4318 211667777 211668021 6.460000e-86 329.0
128 TraesCS7A01G303200 chr6D 98.347 121 2 0 1518 1638 115044664 115044544 6.790000e-51 213.0
129 TraesCS7A01G303200 chr6D 93.478 138 6 3 1503 1638 37515131 37514995 1.470000e-47 202.0
130 TraesCS7A01G303200 chr6D 96.694 121 4 0 1518 1638 95895970 95896090 1.470000e-47 202.0
131 TraesCS7A01G303200 chr6D 96.694 121 4 0 1518 1638 126631753 126631873 1.470000e-47 202.0
132 TraesCS7A01G303200 chr6D 96.721 122 2 2 1518 1638 295604310 295604190 1.470000e-47 202.0
133 TraesCS7A01G303200 chr6D 95.968 124 5 0 1515 1638 403312267 403312390 1.470000e-47 202.0
134 TraesCS7A01G303200 chr6D 95.968 124 5 0 1515 1638 423681217 423681340 1.470000e-47 202.0
135 TraesCS7A01G303200 chr6D 78.075 187 29 11 7922 8106 453963795 453963971 3.300000e-19 108.0
136 TraesCS7A01G303200 chr6D 96.667 60 0 2 1642 1699 210769572 210769513 1.980000e-16 99.0
137 TraesCS7A01G303200 chr6D 96.667 60 0 2 1642 1699 424819734 424819675 1.980000e-16 99.0
138 TraesCS7A01G303200 chr6D 96.610 59 0 2 1642 1698 422907486 422907428 7.140000e-16 97.1
139 TraesCS7A01G303200 chr6D 96.610 59 0 2 1641 1697 449230278 449230336 7.140000e-16 97.1
140 TraesCS7A01G303200 chr2B 86.973 261 28 4 4065 4320 722028486 722028227 1.100000e-73 289.0
141 TraesCS7A01G303200 chr2B 98.361 122 2 0 1517 1638 199013725 199013846 1.890000e-51 215.0
142 TraesCS7A01G303200 chr2B 93.478 46 2 1 1451 1495 58772856 58772811 5.590000e-07 67.6
143 TraesCS7A01G303200 chr1B 91.549 213 11 4 7900 8106 566825455 566825666 3.940000e-73 287.0
144 TraesCS7A01G303200 chr1B 90.521 211 14 4 7902 8106 650445196 650445406 3.070000e-69 274.0
145 TraesCS7A01G303200 chr1B 89.767 215 16 5 7898 8106 566824539 566824753 3.970000e-68 270.0
146 TraesCS7A01G303200 chr1B 89.252 214 15 5 7900 8106 566827402 566827614 2.390000e-65 261.0
147 TraesCS7A01G303200 chr1B 95.312 64 2 1 1642 1704 44284819 44284756 5.520000e-17 100.0
148 TraesCS7A01G303200 chr1B 93.939 66 3 1 1642 1707 56892270 56892334 1.980000e-16 99.0
149 TraesCS7A01G303200 chr1B 95.000 40 1 1 1400 1439 583952436 583952474 2.600000e-05 62.1
150 TraesCS7A01G303200 chr1B 94.595 37 0 1 1398 1432 188263437 188263473 1.000000e-03 56.5
151 TraesCS7A01G303200 chr3D 97.541 122 3 0 1517 1638 91666449 91666570 8.780000e-50 209.0
152 TraesCS7A01G303200 chr3D 95.420 131 5 1 1508 1638 323763176 323763305 3.160000e-49 207.0
153 TraesCS7A01G303200 chr3D 92.806 139 8 2 1501 1638 280386957 280387094 5.290000e-47 200.0
154 TraesCS7A01G303200 chr3D 93.382 136 7 2 1504 1638 365000971 365000837 5.290000e-47 200.0
155 TraesCS7A01G303200 chr3D 87.821 156 13 3 7957 8106 388309714 388309869 2.480000e-40 178.0
156 TraesCS7A01G303200 chr3D 98.361 61 1 0 1642 1702 422743094 422743154 3.300000e-19 108.0
157 TraesCS7A01G303200 chr3D 95.238 63 1 2 1644 1705 187836974 187837035 1.980000e-16 99.0
158 TraesCS7A01G303200 chr3D 95.161 62 2 1 1642 1703 575701026 575700966 7.140000e-16 97.1
159 TraesCS7A01G303200 chr3D 93.548 62 3 1 7896 7957 48153734 48153794 3.320000e-14 91.6
160 TraesCS7A01G303200 chr3D 92.188 64 2 1 7899 7962 388308825 388308885 4.290000e-13 87.9
161 TraesCS7A01G303200 chr3D 89.831 59 6 0 8048 8106 452578722 452578780 9.300000e-10 76.8
162 TraesCS7A01G303200 chr3D 100.000 30 0 0 1458 1487 608489909 608489880 1.000000e-03 56.5
163 TraesCS7A01G303200 chr2A 97.222 36 1 0 1452 1487 683927999 683927964 2.600000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G303200 chr7A 425782564 425791198 8634 True 15946.000000 15946 100.000000 1 8635 1 chr7A.!!$R4 8634
1 TraesCS7A01G303200 chr7A 567517409 567519672 2263 False 3155.000000 3155 91.821000 2044 4312 1 chr7A.!!$F1 2268
2 TraesCS7A01G303200 chr7B 372823692 372832952 9260 True 2531.500000 6850 94.434500 1 8635 4 chr7B.!!$R5 8634
3 TraesCS7A01G303200 chr7D 595074220 595076426 2206 True 3077.000000 3077 91.881000 2045 4250 1 chr7D.!!$R1 2205
4 TraesCS7A01G303200 chr7D 378168997 378174159 5162 True 2937.000000 5753 97.326333 1 7950 3 chr7D.!!$R3 7949
5 TraesCS7A01G303200 chr7D 378159819 378163855 4036 True 678.500000 1140 91.298500 896 8635 2 chr7D.!!$R2 7739
6 TraesCS7A01G303200 chr1D 98830445 98832706 2261 False 3341.000000 3341 93.375000 2045 4300 1 chr1D.!!$F2 2255
7 TraesCS7A01G303200 chr1D 419718270 419720682 2412 False 276.000000 285 90.084500 7892 8106 2 chr1D.!!$F7 214
8 TraesCS7A01G303200 chr5B 330740030 330742288 2258 True 3286.000000 3286 92.870000 2045 4315 1 chr5B.!!$R1 2270
9 TraesCS7A01G303200 chr2D 376694220 376696485 2265 False 3262.000000 3262 92.679000 2044 4311 1 chr2D.!!$F3 2267
10 TraesCS7A01G303200 chr2D 361252201 361254339 2138 True 3057.000000 3057 92.440000 2045 4194 1 chr2D.!!$R1 2149
11 TraesCS7A01G303200 chr6A 114231261 114233535 2274 False 3208.000000 3208 92.120000 2032 4317 1 chr6A.!!$F1 2285
12 TraesCS7A01G303200 chr5A 455862257 455864555 2298 True 3110.000000 3110 91.312000 2043 4311 1 chr5A.!!$R2 2268
13 TraesCS7A01G303200 chr6B 626888075 626890345 2270 False 3072.000000 3072 91.129000 2045 4311 1 chr6B.!!$F2 2266
14 TraesCS7A01G303200 chr6B 622643183 622644726 1543 False 1882.000000 1882 88.639000 2763 4318 1 chr6B.!!$F1 1555
15 TraesCS7A01G303200 chr3B 408360493 408362790 2297 False 3046.000000 3046 90.751000 2041 4318 1 chr3B.!!$F1 2277
16 TraesCS7A01G303200 chr4D 36533443 36535500 2057 True 2859.000000 2859 91.756000 2045 4103 1 chr4D.!!$R4 2058
17 TraesCS7A01G303200 chr4D 509029153 509029778 625 True 268.000000 268 75.382000 3687 4317 1 chr4D.!!$R11 630
18 TraesCS7A01G303200 chr1B 566824539 566827614 3075 False 272.666667 287 90.189333 7898 8106 3 chr1B.!!$F5 208

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
84 85 0.250513 ACTAAGCAAGAAGGAGGCGG 59.749 55.000 0.00 0.0 0.00 6.13 F
1538 1584 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.0 0.00 2.17 F
3019 3095 0.675633 AAGCGCAAGAGGCACAAATT 59.324 45.000 11.47 0.0 45.17 1.82 F
4365 4498 0.034089 AGGGTTGTGATAGGCTTGGC 60.034 55.000 0.00 0.0 0.00 4.52 F
4495 4628 0.034089 AGGGTTGTGATAGGCTTGGC 60.034 55.000 0.00 0.0 0.00 4.52 F
4594 4727 0.036294 GGGAAGTCCTCGTGAAAGGG 60.036 60.000 0.00 0.0 37.02 3.95 F
4595 4728 0.685660 GGAAGTCCTCGTGAAAGGGT 59.314 55.000 0.00 0.0 37.02 4.34 F
4596 4729 1.071857 GGAAGTCCTCGTGAAAGGGTT 59.928 52.381 0.00 0.0 37.02 4.11 F
5691 5831 1.656587 TACAACAGACAGCCCTCCAT 58.343 50.000 0.00 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1633 1679 0.906775 TGGGGTAGGCTAAAACTCCG 59.093 55.000 0.00 0.00 39.28 4.63 R
3100 3177 1.244816 CACCTGGATCGCCTCGTATA 58.755 55.000 0.00 0.00 34.31 1.47 R
4427 4560 0.031111 CCAGGAGGTCACCCATCCTA 60.031 60.000 4.27 0.00 36.69 2.94 R
5339 5479 2.068519 CTGCATCAAGTCAACTACGCA 58.931 47.619 0.00 0.00 0.00 5.24 R
6439 6583 1.080434 GACACGAGCTCCTGGTGAC 60.080 63.158 22.21 14.56 41.56 3.67 R
6827 6971 1.666888 GCTTTTGGTTCATCTGGCACG 60.667 52.381 0.00 0.00 0.00 5.34 R
7345 7489 2.039480 TCAAGAAGCAGAATGTCTGGCT 59.961 45.455 7.34 2.62 44.43 4.75 R
7476 7620 0.305922 GACAATCTATGCGCCACTGC 59.694 55.000 4.18 0.00 0.00 4.40 R
8351 8505 2.365617 TCCATTCGCTTCCTGATCCTAC 59.634 50.000 0.00 0.00 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 0.250513 ACTAAGCAAGAAGGAGGCGG 59.749 55.000 0.00 0.00 0.00 6.13
610 612 3.510459 TCTCCAAGGATTCTCACTGTCA 58.490 45.455 0.00 0.00 0.00 3.58
791 833 9.696917 CAGAATTAAAGTTAGAATTTGGCTGTT 57.303 29.630 0.00 0.00 0.00 3.16
1141 1183 8.506168 TGCAAGAAAAGGGTAATTCTGTATAG 57.494 34.615 0.00 0.00 36.09 1.31
1393 1439 4.472286 CACTTTGTCAACAACGTTCTGTT 58.528 39.130 0.00 0.00 43.09 3.16
1482 1528 5.220662 GCGACAATTAATATGGATCGGATGG 60.221 44.000 0.00 0.00 0.00 3.51
1517 1563 5.014202 ACGGAATTGGCTGGTAAAGTAAAT 58.986 37.500 0.00 0.00 0.00 1.40
1518 1564 6.181908 ACGGAATTGGCTGGTAAAGTAAATA 58.818 36.000 0.00 0.00 0.00 1.40
1519 1565 6.094464 ACGGAATTGGCTGGTAAAGTAAATAC 59.906 38.462 0.00 0.00 0.00 1.89
1520 1566 6.317893 CGGAATTGGCTGGTAAAGTAAATACT 59.682 38.462 0.00 0.00 38.39 2.12
1522 1568 7.201794 GGAATTGGCTGGTAAAGTAAATACTCC 60.202 40.741 0.00 0.00 34.99 3.85
1523 1569 5.106876 TGGCTGGTAAAGTAAATACTCCC 57.893 43.478 0.00 0.00 34.99 4.30
1526 1572 5.366460 GCTGGTAAAGTAAATACTCCCTCC 58.634 45.833 0.00 0.00 34.99 4.30
1527 1573 5.598769 CTGGTAAAGTAAATACTCCCTCCG 58.401 45.833 0.00 0.00 34.99 4.63
1528 1574 5.025453 TGGTAAAGTAAATACTCCCTCCGT 58.975 41.667 0.00 0.00 34.99 4.69
1529 1575 5.127682 TGGTAAAGTAAATACTCCCTCCGTC 59.872 44.000 0.00 0.00 34.99 4.79
1530 1576 4.750021 AAAGTAAATACTCCCTCCGTCC 57.250 45.455 0.00 0.00 34.99 4.79
1531 1577 2.675583 AGTAAATACTCCCTCCGTCCC 58.324 52.381 0.00 0.00 0.00 4.46
1532 1578 2.023695 AGTAAATACTCCCTCCGTCCCA 60.024 50.000 0.00 0.00 0.00 4.37
1533 1579 1.961133 AAATACTCCCTCCGTCCCAA 58.039 50.000 0.00 0.00 0.00 4.12
1535 1581 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
1536 1582 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
1538 1584 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
1539 1585 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
1540 1586 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
1541 1587 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
1542 1588 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
1543 1589 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
1544 1590 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
1546 1592 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
1548 1594 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
1549 1595 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
1550 1596 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
1552 1598 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
1553 1599 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
1554 1600 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
1555 1601 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
1564 1610 9.582431 CTTGTCTTAGATTTGTCTAAATACGGA 57.418 33.333 0.26 0.00 36.66 4.69
1566 1612 9.529325 TGTCTTAGATTTGTCTAAATACGGATG 57.471 33.333 0.26 0.00 36.66 3.51
1578 1624 9.752274 GTCTAAATACGGATGTATCTAGTTACG 57.248 37.037 6.50 0.00 40.42 3.18
1585 1631 7.989826 ACGGATGTATCTAGTTACGTTTTAGT 58.010 34.615 0.00 3.78 0.00 2.24
1586 1632 7.912250 ACGGATGTATCTAGTTACGTTTTAGTG 59.088 37.037 0.00 0.00 0.00 2.74
1587 1633 7.912250 CGGATGTATCTAGTTACGTTTTAGTGT 59.088 37.037 0.00 0.00 0.00 3.55
1588 1634 9.578439 GGATGTATCTAGTTACGTTTTAGTGTT 57.422 33.333 0.00 0.00 0.00 3.32
1631 1677 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
1633 1679 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
1634 1680 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
1635 1681 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
1636 1682 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
1637 1683 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
1651 1697 0.907486 ACGGAGTTTTAGCCTACCCC 59.093 55.000 0.00 0.00 37.78 4.95
1652 1698 0.906775 CGGAGTTTTAGCCTACCCCA 59.093 55.000 0.00 0.00 0.00 4.96
1653 1699 1.279846 CGGAGTTTTAGCCTACCCCAA 59.720 52.381 0.00 0.00 0.00 4.12
1654 1700 2.719739 GGAGTTTTAGCCTACCCCAAC 58.280 52.381 0.00 0.00 0.00 3.77
1656 1702 3.245158 GGAGTTTTAGCCTACCCCAACTT 60.245 47.826 0.00 0.00 0.00 2.66
1657 1703 3.756963 GAGTTTTAGCCTACCCCAACTTG 59.243 47.826 0.00 0.00 0.00 3.16
1658 1704 3.139584 AGTTTTAGCCTACCCCAACTTGT 59.860 43.478 0.00 0.00 0.00 3.16
1659 1705 3.887916 TTTAGCCTACCCCAACTTGTT 57.112 42.857 0.00 0.00 0.00 2.83
1661 1707 1.995376 AGCCTACCCCAACTTGTTTG 58.005 50.000 0.00 0.00 34.63 2.93
1672 1718 3.977427 CAACTTGTTTGGGACTAAAGGC 58.023 45.455 0.00 0.00 0.00 4.35
1674 1720 3.910989 ACTTGTTTGGGACTAAAGGCTT 58.089 40.909 0.00 0.00 0.00 4.35
1675 1721 4.286707 ACTTGTTTGGGACTAAAGGCTTT 58.713 39.130 17.76 17.76 0.00 3.51
1676 1722 4.099419 ACTTGTTTGGGACTAAAGGCTTTG 59.901 41.667 22.32 13.97 0.00 2.77
1677 1723 3.637769 TGTTTGGGACTAAAGGCTTTGT 58.362 40.909 22.32 16.86 0.00 2.83
1678 1724 4.027437 TGTTTGGGACTAAAGGCTTTGTT 58.973 39.130 22.32 8.73 0.00 2.83
1679 1725 4.142049 TGTTTGGGACTAAAGGCTTTGTTG 60.142 41.667 22.32 13.85 0.00 3.33
1682 1728 3.383185 TGGGACTAAAGGCTTTGTTGTTG 59.617 43.478 22.32 7.79 0.00 3.33
1684 1730 4.142026 GGGACTAAAGGCTTTGTTGTTGTT 60.142 41.667 22.32 0.00 0.00 2.83
1748 1794 7.831690 TGCAAATGACCTTCCAATAGTAATACA 59.168 33.333 0.00 0.00 0.00 2.29
2027 2074 8.199176 AGTACAATGAGTAGTCGATATATCCG 57.801 38.462 7.15 3.12 30.41 4.18
2028 2075 5.881447 ACAATGAGTAGTCGATATATCCGC 58.119 41.667 7.15 0.65 0.00 5.54
2031 2078 5.349061 TGAGTAGTCGATATATCCGCCTA 57.651 43.478 7.15 2.57 0.00 3.93
2033 2080 5.758784 TGAGTAGTCGATATATCCGCCTATG 59.241 44.000 7.15 0.00 0.00 2.23
2034 2081 5.682659 AGTAGTCGATATATCCGCCTATGT 58.317 41.667 7.15 0.00 0.00 2.29
2035 2082 5.759273 AGTAGTCGATATATCCGCCTATGTC 59.241 44.000 7.15 0.00 0.00 3.06
2036 2083 4.783055 AGTCGATATATCCGCCTATGTCT 58.217 43.478 7.15 0.00 0.00 3.41
2037 2084 5.194432 AGTCGATATATCCGCCTATGTCTT 58.806 41.667 7.15 0.00 0.00 3.01
2039 2086 5.297278 GTCGATATATCCGCCTATGTCTTCT 59.703 44.000 7.15 0.00 0.00 2.85
2171 2242 2.407210 GCGCACGAGAGAGAGAGG 59.593 66.667 0.30 0.00 0.00 3.69
2267 2340 1.364269 TCCCAAACGGGTCCTTACAT 58.636 50.000 0.00 0.00 45.04 2.29
2536 2610 1.359474 AGCCTCCAGGTAGAAGAGTCA 59.641 52.381 0.00 0.00 37.57 3.41
2550 2624 2.172483 GAGTCATGGGCAGACGTGGT 62.172 60.000 0.00 0.00 40.84 4.16
2791 2867 2.809706 GCGGGCGTAGTACATGGA 59.190 61.111 0.00 0.00 0.00 3.41
2881 2957 3.753434 CTCAGCCCGCTGACGAGT 61.753 66.667 15.28 0.00 46.80 4.18
2924 3000 1.739562 CAGTGCCTCGAAGCAGTCC 60.740 63.158 13.44 0.11 44.61 3.85
3019 3095 0.675633 AAGCGCAAGAGGCACAAATT 59.324 45.000 11.47 0.00 45.17 1.82
3072 3149 1.823295 TCCTGTTCGAGGGCATAGC 59.177 57.895 0.00 0.00 43.06 2.97
3100 3177 3.905678 CGCGGCTCCTCGGAGATT 61.906 66.667 16.92 0.00 44.53 2.40
3224 3301 0.885879 TCGCGAACTCTAGCTTGGAA 59.114 50.000 6.20 0.00 0.00 3.53
3457 3535 2.564975 CGTCGTGTAGACCGGCTT 59.435 61.111 0.00 0.00 46.92 4.35
3507 3586 1.731969 GACGACGACAGGGGAAACG 60.732 63.158 0.00 0.00 0.00 3.60
3511 3590 1.896122 GACGACAGGGGAAACGGGAT 61.896 60.000 0.00 0.00 0.00 3.85
3550 3630 4.148825 GCCAGTCGTCGGGATGCT 62.149 66.667 2.65 0.00 0.00 3.79
3748 3833 1.367840 GCGGCCCATAGAATCTCGT 59.632 57.895 0.00 0.00 0.00 4.18
3812 3897 2.430610 GGCAGCCGTCATCTCCTCT 61.431 63.158 0.00 0.00 0.00 3.69
4004 4090 2.070039 CCGGATCCCTACCAAGGCA 61.070 63.158 6.06 0.00 42.14 4.75
4021 4107 1.373570 GCATGGTCTCAGGTTGTAGC 58.626 55.000 0.00 0.00 0.00 3.58
4103 4192 2.101185 CGCGTGCACGAGAGAGAT 59.899 61.111 41.19 0.00 41.67 2.75
4104 4193 2.220224 CGCGTGCACGAGAGAGATG 61.220 63.158 41.19 15.56 41.67 2.90
4108 4229 2.343426 TGCACGAGAGAGATGGCGT 61.343 57.895 0.00 0.00 37.48 5.68
4116 4240 3.224324 GAGATGGCGTAGGGGCGA 61.224 66.667 0.00 0.00 46.04 5.54
4196 4326 2.496070 GCTTAATCCCAAAACAGGTCCC 59.504 50.000 0.00 0.00 0.00 4.46
4218 4348 9.236006 GTCCCTACACGAGTTTATATAATCCTA 57.764 37.037 0.00 0.00 0.00 2.94
4306 4439 0.321653 GCCCCTAATATGCCGGTCAG 60.322 60.000 1.90 0.00 0.00 3.51
4317 4450 0.179045 GCCGGTCAGAACATAGGCAT 60.179 55.000 1.90 0.00 39.93 4.40
4318 4451 1.070134 GCCGGTCAGAACATAGGCATA 59.930 52.381 1.90 0.00 39.93 3.14
4319 4452 2.868044 GCCGGTCAGAACATAGGCATAG 60.868 54.545 1.90 0.00 39.93 2.23
4320 4453 2.408050 CGGTCAGAACATAGGCATAGC 58.592 52.381 0.00 0.00 0.00 2.97
4330 4463 2.203209 GGCATAGCCGGTCCCAAG 60.203 66.667 1.90 0.00 39.62 3.61
4331 4464 2.902343 GCATAGCCGGTCCCAAGC 60.902 66.667 1.90 0.00 0.00 4.01
4332 4465 2.203209 CATAGCCGGTCCCAAGCC 60.203 66.667 1.90 0.00 0.00 4.35
4333 4466 3.489513 ATAGCCGGTCCCAAGCCC 61.490 66.667 1.90 0.00 0.00 5.19
4342 4475 2.044352 CCCAAGCCCGGGTAAAGG 60.044 66.667 24.63 18.41 41.83 3.11
4343 4476 2.608550 CCCAAGCCCGGGTAAAGGA 61.609 63.158 24.63 0.00 41.83 3.36
4344 4477 1.077716 CCAAGCCCGGGTAAAGGAG 60.078 63.158 24.63 5.31 0.00 3.69
4345 4478 1.077716 CAAGCCCGGGTAAAGGAGG 60.078 63.158 24.63 0.00 0.00 4.30
4346 4479 1.229723 AAGCCCGGGTAAAGGAGGA 60.230 57.895 24.63 0.00 0.00 3.71
4347 4480 1.272554 AAGCCCGGGTAAAGGAGGAG 61.273 60.000 24.63 0.00 0.00 3.69
4348 4481 2.743179 GCCCGGGTAAAGGAGGAGG 61.743 68.421 24.63 0.00 0.00 4.30
4349 4482 2.070650 CCCGGGTAAAGGAGGAGGG 61.071 68.421 14.18 0.00 0.00 4.30
4350 4483 1.306739 CCGGGTAAAGGAGGAGGGT 60.307 63.158 0.00 0.00 0.00 4.34
4351 4484 0.912968 CCGGGTAAAGGAGGAGGGTT 60.913 60.000 0.00 0.00 0.00 4.11
4352 4485 0.252197 CGGGTAAAGGAGGAGGGTTG 59.748 60.000 0.00 0.00 0.00 3.77
4353 4486 1.369403 GGGTAAAGGAGGAGGGTTGT 58.631 55.000 0.00 0.00 0.00 3.32
4354 4487 1.004394 GGGTAAAGGAGGAGGGTTGTG 59.996 57.143 0.00 0.00 0.00 3.33
4355 4488 1.982958 GGTAAAGGAGGAGGGTTGTGA 59.017 52.381 0.00 0.00 0.00 3.58
4356 4489 2.576648 GGTAAAGGAGGAGGGTTGTGAT 59.423 50.000 0.00 0.00 0.00 3.06
4357 4490 3.778629 GGTAAAGGAGGAGGGTTGTGATA 59.221 47.826 0.00 0.00 0.00 2.15
4358 4491 4.141688 GGTAAAGGAGGAGGGTTGTGATAG 60.142 50.000 0.00 0.00 0.00 2.08
4359 4492 2.182516 AGGAGGAGGGTTGTGATAGG 57.817 55.000 0.00 0.00 0.00 2.57
4360 4493 0.470341 GGAGGAGGGTTGTGATAGGC 59.530 60.000 0.00 0.00 0.00 3.93
4361 4494 1.501582 GAGGAGGGTTGTGATAGGCT 58.498 55.000 0.00 0.00 0.00 4.58
4362 4495 1.840635 GAGGAGGGTTGTGATAGGCTT 59.159 52.381 0.00 0.00 0.00 4.35
4363 4496 1.561542 AGGAGGGTTGTGATAGGCTTG 59.438 52.381 0.00 0.00 0.00 4.01
4364 4497 1.408822 GGAGGGTTGTGATAGGCTTGG 60.409 57.143 0.00 0.00 0.00 3.61
4365 4498 0.034089 AGGGTTGTGATAGGCTTGGC 60.034 55.000 0.00 0.00 0.00 4.52
4366 4499 1.376609 GGGTTGTGATAGGCTTGGCG 61.377 60.000 0.00 0.00 0.00 5.69
4367 4500 0.392461 GGTTGTGATAGGCTTGGCGA 60.392 55.000 0.00 0.00 0.00 5.54
4368 4501 1.009829 GTTGTGATAGGCTTGGCGAG 58.990 55.000 0.00 0.00 0.00 5.03
4379 4512 4.458666 TGGCGAGCCAACGTAAAA 57.541 50.000 15.24 0.00 44.12 1.52
4380 4513 2.704108 TGGCGAGCCAACGTAAAAA 58.296 47.368 15.24 0.00 44.12 1.94
4381 4514 0.308376 TGGCGAGCCAACGTAAAAAC 59.692 50.000 15.24 0.00 44.12 2.43
4382 4515 0.589708 GGCGAGCCAACGTAAAAACT 59.410 50.000 9.58 0.00 35.81 2.66
4383 4516 1.799994 GGCGAGCCAACGTAAAAACTA 59.200 47.619 9.58 0.00 35.81 2.24
4384 4517 2.159747 GGCGAGCCAACGTAAAAACTAG 60.160 50.000 9.58 0.00 35.81 2.57
4385 4518 2.723923 GCGAGCCAACGTAAAAACTAGC 60.724 50.000 0.00 0.00 35.59 3.42
4386 4519 2.159747 CGAGCCAACGTAAAAACTAGCC 60.160 50.000 0.00 0.00 0.00 3.93
4387 4520 2.809696 GAGCCAACGTAAAAACTAGCCA 59.190 45.455 0.00 0.00 0.00 4.75
4388 4521 2.812011 AGCCAACGTAAAAACTAGCCAG 59.188 45.455 0.00 0.00 0.00 4.85
4389 4522 2.551032 GCCAACGTAAAAACTAGCCAGT 59.449 45.455 0.00 0.00 36.19 4.00
4390 4523 3.364664 GCCAACGTAAAAACTAGCCAGTC 60.365 47.826 0.00 0.00 32.29 3.51
4391 4524 3.187842 CCAACGTAAAAACTAGCCAGTCC 59.812 47.826 0.00 0.00 32.29 3.85
4392 4525 3.049708 ACGTAAAAACTAGCCAGTCCC 57.950 47.619 0.00 0.00 32.29 4.46
4393 4526 2.369532 ACGTAAAAACTAGCCAGTCCCA 59.630 45.455 0.00 0.00 32.29 4.37
4394 4527 3.008704 ACGTAAAAACTAGCCAGTCCCAT 59.991 43.478 0.00 0.00 32.29 4.00
4395 4528 4.223477 ACGTAAAAACTAGCCAGTCCCATA 59.777 41.667 0.00 0.00 32.29 2.74
4396 4529 4.809426 CGTAAAAACTAGCCAGTCCCATAG 59.191 45.833 0.00 0.00 32.29 2.23
4397 4530 3.933861 AAAACTAGCCAGTCCCATAGG 57.066 47.619 0.00 0.00 32.29 2.57
4398 4531 2.570386 AACTAGCCAGTCCCATAGGT 57.430 50.000 0.00 0.00 32.29 3.08
4399 4532 3.700863 AACTAGCCAGTCCCATAGGTA 57.299 47.619 0.00 0.00 32.29 3.08
4400 4533 3.925261 ACTAGCCAGTCCCATAGGTAT 57.075 47.619 0.00 0.00 0.00 2.73
4401 4534 3.511477 ACTAGCCAGTCCCATAGGTATG 58.489 50.000 0.00 0.00 0.00 2.39
4402 4535 2.795291 AGCCAGTCCCATAGGTATGA 57.205 50.000 0.00 0.00 35.75 2.15
4403 4536 3.060479 AGCCAGTCCCATAGGTATGAA 57.940 47.619 0.00 0.00 35.75 2.57
4404 4537 3.393687 AGCCAGTCCCATAGGTATGAAA 58.606 45.455 0.00 0.00 35.75 2.69
4405 4538 3.136626 AGCCAGTCCCATAGGTATGAAAC 59.863 47.826 0.00 0.00 35.75 2.78
4416 4549 3.420839 GGTATGAAACCCATTTGAGCG 57.579 47.619 0.00 0.00 43.16 5.03
4417 4550 3.013921 GGTATGAAACCCATTTGAGCGA 58.986 45.455 0.00 0.00 43.16 4.93
4418 4551 3.065371 GGTATGAAACCCATTTGAGCGAG 59.935 47.826 0.00 0.00 43.16 5.03
4419 4552 2.559698 TGAAACCCATTTGAGCGAGA 57.440 45.000 0.00 0.00 0.00 4.04
4420 4553 2.426522 TGAAACCCATTTGAGCGAGAG 58.573 47.619 0.00 0.00 0.00 3.20
4421 4554 2.224523 TGAAACCCATTTGAGCGAGAGT 60.225 45.455 0.00 0.00 0.00 3.24
4422 4555 1.813513 AACCCATTTGAGCGAGAGTG 58.186 50.000 0.00 0.00 0.00 3.51
4423 4556 0.036010 ACCCATTTGAGCGAGAGTGG 60.036 55.000 0.00 0.00 0.00 4.00
4424 4557 0.036010 CCCATTTGAGCGAGAGTGGT 60.036 55.000 0.00 0.00 0.00 4.16
4425 4558 1.207089 CCCATTTGAGCGAGAGTGGTA 59.793 52.381 0.00 0.00 0.00 3.25
4426 4559 2.271800 CCATTTGAGCGAGAGTGGTAC 58.728 52.381 0.00 0.00 0.00 3.34
4427 4560 2.093973 CCATTTGAGCGAGAGTGGTACT 60.094 50.000 0.00 0.00 0.00 2.73
4428 4561 3.130516 CCATTTGAGCGAGAGTGGTACTA 59.869 47.826 0.00 0.00 0.00 1.82
4429 4562 4.355437 CATTTGAGCGAGAGTGGTACTAG 58.645 47.826 0.00 0.00 0.00 2.57
4430 4563 2.039818 TGAGCGAGAGTGGTACTAGG 57.960 55.000 0.00 0.00 0.00 3.02
4431 4564 1.558294 TGAGCGAGAGTGGTACTAGGA 59.442 52.381 0.00 0.00 0.00 2.94
4432 4565 2.172930 TGAGCGAGAGTGGTACTAGGAT 59.827 50.000 0.00 0.00 0.00 3.24
4433 4566 2.550606 GAGCGAGAGTGGTACTAGGATG 59.449 54.545 0.00 0.00 0.00 3.51
4434 4567 1.609555 GCGAGAGTGGTACTAGGATGG 59.390 57.143 0.00 0.00 0.00 3.51
4435 4568 2.231529 CGAGAGTGGTACTAGGATGGG 58.768 57.143 0.00 0.00 0.00 4.00
4436 4569 2.423088 CGAGAGTGGTACTAGGATGGGT 60.423 54.545 0.00 0.00 0.00 4.51
4437 4570 2.959707 GAGAGTGGTACTAGGATGGGTG 59.040 54.545 0.00 0.00 0.00 4.61
4438 4571 2.585900 AGAGTGGTACTAGGATGGGTGA 59.414 50.000 0.00 0.00 0.00 4.02
4439 4572 2.694109 GAGTGGTACTAGGATGGGTGAC 59.306 54.545 0.00 0.00 0.00 3.67
4451 4584 4.234673 GGTGACCTCCTGGGAAGT 57.765 61.111 0.00 0.00 38.76 3.01
4452 4585 1.984020 GGTGACCTCCTGGGAAGTC 59.016 63.158 10.52 10.52 36.44 3.01
4453 4586 1.554583 GGTGACCTCCTGGGAAGTCC 61.555 65.000 13.79 6.97 35.38 3.85
4454 4587 0.545548 GTGACCTCCTGGGAAGTCCT 60.546 60.000 13.79 0.00 35.38 3.85
4455 4588 0.193574 TGACCTCCTGGGAAGTCCTT 59.806 55.000 13.79 0.00 35.38 3.36
4456 4589 0.615850 GACCTCCTGGGAAGTCCTTG 59.384 60.000 7.04 0.00 38.76 3.61
4457 4590 0.104409 ACCTCCTGGGAAGTCCTTGT 60.104 55.000 0.00 0.00 38.76 3.16
4458 4591 0.326264 CCTCCTGGGAAGTCCTTGTG 59.674 60.000 0.00 0.00 37.23 3.33
4459 4592 1.352083 CTCCTGGGAAGTCCTTGTGA 58.648 55.000 0.00 0.00 36.20 3.58
4460 4593 1.699634 CTCCTGGGAAGTCCTTGTGAA 59.300 52.381 0.00 0.00 36.20 3.18
4461 4594 2.106511 CTCCTGGGAAGTCCTTGTGAAA 59.893 50.000 0.00 0.00 36.20 2.69
4462 4595 2.106511 TCCTGGGAAGTCCTTGTGAAAG 59.893 50.000 0.00 0.00 36.20 2.62
4463 4596 2.508526 CTGGGAAGTCCTTGTGAAAGG 58.491 52.381 0.00 0.00 41.35 3.11
4464 4597 1.144913 TGGGAAGTCCTTGTGAAAGGG 59.855 52.381 4.73 0.00 40.38 3.95
4465 4598 1.145119 GGGAAGTCCTTGTGAAAGGGT 59.855 52.381 4.73 0.00 40.38 4.34
4466 4599 2.424379 GGGAAGTCCTTGTGAAAGGGTT 60.424 50.000 4.73 0.00 40.38 4.11
4467 4600 3.296854 GGAAGTCCTTGTGAAAGGGTTT 58.703 45.455 4.73 0.44 40.38 3.27
4468 4601 3.318275 GGAAGTCCTTGTGAAAGGGTTTC 59.682 47.826 4.73 8.41 40.38 2.78
4469 4602 3.662759 AGTCCTTGTGAAAGGGTTTCA 57.337 42.857 4.73 0.00 46.68 2.69
4480 4613 6.652205 TGAAAGGGTTTCATATCTAAGGGT 57.348 37.500 0.00 0.00 44.21 4.34
4481 4614 7.039722 TGAAAGGGTTTCATATCTAAGGGTT 57.960 36.000 0.00 0.00 44.21 4.11
4482 4615 6.889722 TGAAAGGGTTTCATATCTAAGGGTTG 59.110 38.462 0.00 0.00 44.21 3.77
4483 4616 6.402981 AAGGGTTTCATATCTAAGGGTTGT 57.597 37.500 0.00 0.00 0.00 3.32
4484 4617 5.755849 AGGGTTTCATATCTAAGGGTTGTG 58.244 41.667 0.00 0.00 0.00 3.33
4485 4618 5.491078 AGGGTTTCATATCTAAGGGTTGTGA 59.509 40.000 0.00 0.00 0.00 3.58
4486 4619 6.160459 AGGGTTTCATATCTAAGGGTTGTGAT 59.840 38.462 0.00 0.00 0.00 3.06
4487 4620 7.349859 AGGGTTTCATATCTAAGGGTTGTGATA 59.650 37.037 0.00 0.00 0.00 2.15
4488 4621 7.661847 GGGTTTCATATCTAAGGGTTGTGATAG 59.338 40.741 0.00 0.00 0.00 2.08
4489 4622 7.661847 GGTTTCATATCTAAGGGTTGTGATAGG 59.338 40.741 0.00 0.00 0.00 2.57
4490 4623 6.360370 TCATATCTAAGGGTTGTGATAGGC 57.640 41.667 0.00 0.00 0.00 3.93
4491 4624 6.084738 TCATATCTAAGGGTTGTGATAGGCT 58.915 40.000 0.00 0.00 0.00 4.58
4492 4625 6.558775 TCATATCTAAGGGTTGTGATAGGCTT 59.441 38.462 0.00 0.00 0.00 4.35
4493 4626 4.487714 TCTAAGGGTTGTGATAGGCTTG 57.512 45.455 0.00 0.00 0.00 4.01
4494 4627 2.514458 AAGGGTTGTGATAGGCTTGG 57.486 50.000 0.00 0.00 0.00 3.61
4495 4628 0.034089 AGGGTTGTGATAGGCTTGGC 60.034 55.000 0.00 0.00 0.00 4.52
4496 4629 1.376609 GGGTTGTGATAGGCTTGGCG 61.377 60.000 0.00 0.00 0.00 5.69
4497 4630 0.392461 GGTTGTGATAGGCTTGGCGA 60.392 55.000 0.00 0.00 0.00 5.54
4498 4631 1.009829 GTTGTGATAGGCTTGGCGAG 58.990 55.000 0.00 0.00 0.00 5.03
4509 4642 4.458666 TGGCGAGCCAACGTAAAA 57.541 50.000 15.24 0.00 44.12 1.52
4510 4643 2.704108 TGGCGAGCCAACGTAAAAA 58.296 47.368 15.24 0.00 44.12 1.94
4511 4644 0.308376 TGGCGAGCCAACGTAAAAAC 59.692 50.000 15.24 0.00 44.12 2.43
4512 4645 0.589708 GGCGAGCCAACGTAAAAACT 59.410 50.000 9.58 0.00 35.81 2.66
4513 4646 1.799994 GGCGAGCCAACGTAAAAACTA 59.200 47.619 9.58 0.00 35.81 2.24
4514 4647 2.159747 GGCGAGCCAACGTAAAAACTAG 60.160 50.000 9.58 0.00 35.81 2.57
4515 4648 2.723923 GCGAGCCAACGTAAAAACTAGC 60.724 50.000 0.00 0.00 35.59 3.42
4516 4649 2.159747 CGAGCCAACGTAAAAACTAGCC 60.160 50.000 0.00 0.00 0.00 3.93
4517 4650 2.809696 GAGCCAACGTAAAAACTAGCCA 59.190 45.455 0.00 0.00 0.00 4.75
4518 4651 2.812011 AGCCAACGTAAAAACTAGCCAG 59.188 45.455 0.00 0.00 0.00 4.85
4519 4652 2.551032 GCCAACGTAAAAACTAGCCAGT 59.449 45.455 0.00 0.00 36.19 4.00
4520 4653 3.364664 GCCAACGTAAAAACTAGCCAGTC 60.365 47.826 0.00 0.00 32.29 3.51
4521 4654 4.062991 CCAACGTAAAAACTAGCCAGTCT 58.937 43.478 0.00 0.00 32.29 3.24
4522 4655 4.514066 CCAACGTAAAAACTAGCCAGTCTT 59.486 41.667 0.00 0.00 32.29 3.01
4523 4656 5.008316 CCAACGTAAAAACTAGCCAGTCTTT 59.992 40.000 0.00 0.00 32.29 2.52
4524 4657 6.459161 CCAACGTAAAAACTAGCCAGTCTTTT 60.459 38.462 0.00 0.85 32.29 2.27
4525 4658 6.056428 ACGTAAAAACTAGCCAGTCTTTTG 57.944 37.500 12.02 0.82 32.29 2.44
4526 4659 5.008316 ACGTAAAAACTAGCCAGTCTTTTGG 59.992 40.000 12.02 8.37 41.35 3.28
4527 4660 4.937201 AAAAACTAGCCAGTCTTTTGGG 57.063 40.909 0.00 0.00 38.72 4.12
4529 4662 4.717279 AAACTAGCCAGTCTTTTGGGTA 57.283 40.909 4.17 4.17 46.57 3.69
4530 4663 4.929146 AACTAGCCAGTCTTTTGGGTAT 57.071 40.909 4.61 0.00 46.74 2.73
4531 4664 4.222124 ACTAGCCAGTCTTTTGGGTATG 57.778 45.455 4.61 2.96 46.74 2.39
4532 4665 3.844211 ACTAGCCAGTCTTTTGGGTATGA 59.156 43.478 4.61 0.00 46.74 2.15
4533 4666 3.806949 AGCCAGTCTTTTGGGTATGAA 57.193 42.857 0.00 0.00 46.57 2.57
4534 4667 4.112634 AGCCAGTCTTTTGGGTATGAAA 57.887 40.909 0.00 0.00 46.57 2.69
4535 4668 3.826729 AGCCAGTCTTTTGGGTATGAAAC 59.173 43.478 0.00 0.00 46.57 2.78
4536 4669 5.294122 AGCCAGTCTTTTGGGTATGAAACC 61.294 45.833 0.00 0.00 46.57 3.27
4556 4689 2.822764 CCATTTGGGCGAGAGTAGTAC 58.177 52.381 0.00 0.00 0.00 2.73
4557 4690 2.431057 CCATTTGGGCGAGAGTAGTACT 59.569 50.000 1.37 1.37 0.00 2.73
4558 4691 3.635373 CCATTTGGGCGAGAGTAGTACTA 59.365 47.826 1.88 0.00 0.00 1.82
4559 4692 4.261656 CCATTTGGGCGAGAGTAGTACTAG 60.262 50.000 1.87 0.00 0.00 2.57
4560 4693 2.634815 TGGGCGAGAGTAGTACTAGG 57.365 55.000 1.87 0.00 0.00 3.02
4561 4694 2.121948 TGGGCGAGAGTAGTACTAGGA 58.878 52.381 1.87 0.00 0.00 2.94
4562 4695 2.709934 TGGGCGAGAGTAGTACTAGGAT 59.290 50.000 1.87 0.00 0.00 3.24
4563 4696 3.075884 GGGCGAGAGTAGTACTAGGATG 58.924 54.545 1.87 0.00 0.00 3.51
4564 4697 3.075884 GGCGAGAGTAGTACTAGGATGG 58.924 54.545 1.87 0.00 0.00 3.51
4565 4698 3.075884 GCGAGAGTAGTACTAGGATGGG 58.924 54.545 1.87 0.00 0.00 4.00
4566 4699 3.496515 GCGAGAGTAGTACTAGGATGGGT 60.497 52.174 1.87 0.00 0.00 4.51
4567 4700 4.066490 CGAGAGTAGTACTAGGATGGGTG 58.934 52.174 1.87 0.00 0.00 4.61
4568 4701 4.202336 CGAGAGTAGTACTAGGATGGGTGA 60.202 50.000 1.87 0.00 0.00 4.02
4569 4702 5.051409 AGAGTAGTACTAGGATGGGTGAC 57.949 47.826 1.87 0.00 0.00 3.67
4581 4714 4.234673 GGTGACCTCCTGGGAAGT 57.765 61.111 0.00 0.00 38.76 3.01
4582 4715 1.984020 GGTGACCTCCTGGGAAGTC 59.016 63.158 10.52 10.52 36.44 3.01
4583 4716 1.554583 GGTGACCTCCTGGGAAGTCC 61.555 65.000 13.79 6.97 35.38 3.85
4584 4717 0.545548 GTGACCTCCTGGGAAGTCCT 60.546 60.000 13.79 0.00 35.38 3.85
4585 4718 0.252284 TGACCTCCTGGGAAGTCCTC 60.252 60.000 13.79 0.00 35.38 3.71
4586 4719 1.305381 ACCTCCTGGGAAGTCCTCG 60.305 63.158 0.00 0.00 38.76 4.63
4587 4720 1.305381 CCTCCTGGGAAGTCCTCGT 60.305 63.158 0.00 0.00 37.23 4.18
4588 4721 1.608717 CCTCCTGGGAAGTCCTCGTG 61.609 65.000 0.00 0.00 37.23 4.35
4589 4722 0.612174 CTCCTGGGAAGTCCTCGTGA 60.612 60.000 0.00 0.00 36.20 4.35
4590 4723 0.178944 TCCTGGGAAGTCCTCGTGAA 60.179 55.000 0.00 0.00 36.20 3.18
4591 4724 0.685097 CCTGGGAAGTCCTCGTGAAA 59.315 55.000 0.00 0.00 36.20 2.69
4592 4725 1.338200 CCTGGGAAGTCCTCGTGAAAG 60.338 57.143 0.00 0.00 36.20 2.62
4593 4726 0.685097 TGGGAAGTCCTCGTGAAAGG 59.315 55.000 0.00 0.00 37.81 3.11
4594 4727 0.036294 GGGAAGTCCTCGTGAAAGGG 60.036 60.000 0.00 0.00 37.02 3.95
4595 4728 0.685660 GGAAGTCCTCGTGAAAGGGT 59.314 55.000 0.00 0.00 37.02 4.34
4596 4729 1.071857 GGAAGTCCTCGTGAAAGGGTT 59.928 52.381 0.00 0.00 37.02 4.11
4597 4730 2.486727 GGAAGTCCTCGTGAAAGGGTTT 60.487 50.000 0.00 0.00 37.02 3.27
4598 4731 2.545537 AGTCCTCGTGAAAGGGTTTC 57.454 50.000 0.00 0.00 40.08 2.78
4599 4732 1.766496 AGTCCTCGTGAAAGGGTTTCA 59.234 47.619 0.00 0.00 46.68 2.69
4609 4742 5.975988 TGAAAGGGTTTCATATCTAGCCT 57.024 39.130 0.00 0.00 44.21 4.58
4611 4744 6.827727 TGAAAGGGTTTCATATCTAGCCTAC 58.172 40.000 0.00 0.00 44.21 3.18
4612 4745 5.827326 AAGGGTTTCATATCTAGCCTACC 57.173 43.478 0.00 0.00 38.75 3.18
4613 4746 4.168883 AGGGTTTCATATCTAGCCTACCC 58.831 47.826 0.00 0.00 43.42 3.69
4614 4747 3.263681 GGGTTTCATATCTAGCCTACCCC 59.736 52.174 0.00 0.00 38.39 4.95
4615 4748 3.908103 GGTTTCATATCTAGCCTACCCCA 59.092 47.826 0.00 0.00 0.00 4.96
4616 4749 4.349930 GGTTTCATATCTAGCCTACCCCAA 59.650 45.833 0.00 0.00 0.00 4.12
4617 4750 5.306394 GTTTCATATCTAGCCTACCCCAAC 58.694 45.833 0.00 0.00 0.00 3.77
4618 4751 4.487282 TCATATCTAGCCTACCCCAACT 57.513 45.455 0.00 0.00 0.00 3.16
4619 4752 4.827789 TCATATCTAGCCTACCCCAACTT 58.172 43.478 0.00 0.00 0.00 2.66
4620 4753 4.593206 TCATATCTAGCCTACCCCAACTTG 59.407 45.833 0.00 0.00 0.00 3.16
4621 4754 2.337359 TCTAGCCTACCCCAACTTGT 57.663 50.000 0.00 0.00 0.00 3.16
4622 4755 2.627933 TCTAGCCTACCCCAACTTGTT 58.372 47.619 0.00 0.00 0.00 2.83
4623 4756 2.983898 TCTAGCCTACCCCAACTTGTTT 59.016 45.455 0.00 0.00 0.00 2.83
4624 4757 1.995376 AGCCTACCCCAACTTGTTTG 58.005 50.000 0.00 0.00 34.63 2.93
4636 4769 5.213891 CAACTTGTTTGGGATAAAAGGCT 57.786 39.130 0.00 0.00 0.00 4.58
4637 4770 5.610398 CAACTTGTTTGGGATAAAAGGCTT 58.390 37.500 0.00 0.00 0.00 4.35
4638 4771 5.468540 ACTTGTTTGGGATAAAAGGCTTC 57.531 39.130 0.00 0.00 0.00 3.86
4639 4772 4.022329 ACTTGTTTGGGATAAAAGGCTTCG 60.022 41.667 0.00 0.00 0.00 3.79
4640 4773 3.492337 TGTTTGGGATAAAAGGCTTCGT 58.508 40.909 0.00 0.00 0.00 3.85
4641 4774 4.653868 TGTTTGGGATAAAAGGCTTCGTA 58.346 39.130 0.00 0.00 0.00 3.43
4642 4775 5.071370 TGTTTGGGATAAAAGGCTTCGTAA 58.929 37.500 0.00 0.00 0.00 3.18
4643 4776 5.182380 TGTTTGGGATAAAAGGCTTCGTAAG 59.818 40.000 0.00 0.00 0.00 2.34
4644 4777 4.563140 TGGGATAAAAGGCTTCGTAAGT 57.437 40.909 0.00 0.00 39.48 2.24
4645 4778 5.680594 TGGGATAAAAGGCTTCGTAAGTA 57.319 39.130 0.00 0.00 39.48 2.24
4646 4779 5.667466 TGGGATAAAAGGCTTCGTAAGTAG 58.333 41.667 0.00 0.00 37.86 2.57
4647 4780 5.055144 GGGATAAAAGGCTTCGTAAGTAGG 58.945 45.833 0.00 0.00 35.02 3.18
4648 4781 5.396101 GGGATAAAAGGCTTCGTAAGTAGGT 60.396 44.000 0.00 0.00 35.02 3.08
4649 4782 6.183360 GGGATAAAAGGCTTCGTAAGTAGGTA 60.183 42.308 0.00 0.00 35.02 3.08
4650 4783 7.267857 GGATAAAAGGCTTCGTAAGTAGGTAA 58.732 38.462 0.00 0.00 35.02 2.85
4651 4784 7.437565 GGATAAAAGGCTTCGTAAGTAGGTAAG 59.562 40.741 0.00 0.00 35.02 2.34
4652 4785 5.735285 AAAGGCTTCGTAAGTAGGTAAGT 57.265 39.130 0.00 0.00 35.02 2.24
4653 4786 6.840780 AAAGGCTTCGTAAGTAGGTAAGTA 57.159 37.500 0.00 0.00 35.02 2.24
4654 4787 6.840780 AAGGCTTCGTAAGTAGGTAAGTAA 57.159 37.500 0.00 0.00 35.02 2.24
4655 4788 6.448207 AGGCTTCGTAAGTAGGTAAGTAAG 57.552 41.667 0.00 0.00 35.02 2.34
4656 4789 5.948758 AGGCTTCGTAAGTAGGTAAGTAAGT 59.051 40.000 0.00 0.00 35.02 2.24
4657 4790 7.112779 AGGCTTCGTAAGTAGGTAAGTAAGTA 58.887 38.462 0.00 0.00 35.02 2.24
4782 4919 3.820467 CCTTGTGCCTTACAACATCTTGA 59.180 43.478 0.00 0.00 44.07 3.02
5195 5332 5.508200 TGCTTCACCAACGTTTTATTCTT 57.492 34.783 0.00 0.00 0.00 2.52
5196 5333 5.277825 TGCTTCACCAACGTTTTATTCTTG 58.722 37.500 0.00 0.00 0.00 3.02
5197 5334 4.148174 GCTTCACCAACGTTTTATTCTTGC 59.852 41.667 0.00 0.00 0.00 4.01
5240 5380 6.925610 TGTTAGGTATTTCATGATGTGCTC 57.074 37.500 0.00 0.00 0.00 4.26
5312 5452 6.932400 AGTTGATACCGTTGATGTGTTTTCTA 59.068 34.615 0.00 0.00 0.00 2.10
5444 5584 6.354130 GGAGTTGTGCCCTTAATGATTACTA 58.646 40.000 0.00 0.00 0.00 1.82
5691 5831 1.656587 TACAACAGACAGCCCTCCAT 58.343 50.000 0.00 0.00 0.00 3.41
5723 5863 5.355910 GGACAACAGAACAAACTAGAACCAA 59.644 40.000 0.00 0.00 0.00 3.67
5757 5897 4.791974 CAATCAAAGCAAGAGGTCAGAAC 58.208 43.478 0.00 0.00 0.00 3.01
5795 5935 6.266131 TCTTCAGAATTTGGTATGGGCTAT 57.734 37.500 0.00 0.00 0.00 2.97
5816 5956 4.725556 TGTAGAGACGACATTGCAAAAC 57.274 40.909 1.71 0.00 0.00 2.43
5927 6067 9.415544 ACTATGATCAAGATGCAAAAAGAAAAC 57.584 29.630 0.00 0.00 0.00 2.43
6007 6147 3.378112 TCTTGCAGCACTACATTTATGGC 59.622 43.478 0.00 0.00 0.00 4.40
6133 6273 9.248291 GTTTTCATTGTTCACAATATGACAAGT 57.752 29.630 4.85 0.00 44.10 3.16
6827 6971 2.163412 ACTTGACAGAGAGACGCAGATC 59.837 50.000 0.00 0.00 0.00 2.75
7476 7620 5.787062 CGATCAAGCAATATTACAAGCATCG 59.213 40.000 0.00 0.00 0.00 3.84
7552 7696 2.110721 AGAAAGGGAAGGTGGCTGAAAT 59.889 45.455 0.00 0.00 0.00 2.17
7669 7813 0.537188 CCATTGTAGCCACGAGACCT 59.463 55.000 0.00 0.00 0.00 3.85
7895 8041 9.828691 TCTATCAATTAGGTCATTCCTCTATGA 57.171 33.333 0.00 0.00 44.42 2.15
8030 8177 4.758251 TCGCACATGACTGCCCCG 62.758 66.667 0.00 0.00 33.18 5.73
8147 8299 4.894784 TCCCTCCGATCAATAATAAGTGC 58.105 43.478 0.00 0.00 0.00 4.40
8237 8389 5.897250 TGGTGAGTACAAGGAGCATAATCTA 59.103 40.000 0.00 0.00 0.00 1.98
8275 8429 4.440802 GCCACAAGAACATGGTTGTACAAA 60.441 41.667 10.51 0.00 38.34 2.83
8276 8430 5.655488 CCACAAGAACATGGTTGTACAAAA 58.345 37.500 10.51 2.03 35.10 2.44
8346 8500 5.361857 AGCAGAAACTACCGCCTATTACTAA 59.638 40.000 0.00 0.00 0.00 2.24
8351 8505 7.763071 AGAAACTACCGCCTATTACTAAAACTG 59.237 37.037 0.00 0.00 0.00 3.16
8481 8635 9.740239 CAAGGTATCCATCATTTTGATTTACTG 57.260 33.333 0.00 0.00 34.28 2.74
8490 8644 7.214467 TCATTTTGATTTACTGGACAACTCC 57.786 36.000 0.00 0.00 37.04 3.85
8496 8650 6.356556 TGATTTACTGGACAACTCCATATGG 58.643 40.000 16.25 16.25 46.18 2.74
8549 8703 7.821846 ACAGAAACTGGAAAAATGTTTTAGCAA 59.178 29.630 0.00 0.00 35.51 3.91
8625 8779 4.023291 AGGAAACAAGAAACCTGCAAAGA 58.977 39.130 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 3.498661 CCCAGCCCTATTCCCTTTATCAC 60.499 52.174 0.00 0.00 0.00 3.06
180 181 3.368571 GCCACCTCCTGTTGCTGC 61.369 66.667 0.00 0.00 32.98 5.25
396 398 2.027561 TCTGGTGCAGCGTAGGTAATTT 60.028 45.455 11.91 0.00 35.08 1.82
610 612 0.676782 CGACTTTTCCTGCGGGGATT 60.677 55.000 12.87 0.00 44.66 3.01
622 624 2.367567 TCCTACCAGAGCAACGACTTTT 59.632 45.455 0.00 0.00 0.00 2.27
1086 1128 4.413087 CTGAACACATACGTACCTCTGTC 58.587 47.826 0.00 0.00 0.00 3.51
1141 1183 6.311690 CAGAAAGTAGCTAGGCTTAAGTCAAC 59.688 42.308 10.23 0.00 40.44 3.18
1148 1190 3.769844 AGTGCAGAAAGTAGCTAGGCTTA 59.230 43.478 0.00 0.00 40.44 3.09
1295 1341 2.676076 GTCATTGTCAAAGCGCCAATT 58.324 42.857 2.29 0.00 0.00 2.32
1313 1359 4.143030 GCATGATCATAATAGTGCCACGTC 60.143 45.833 8.15 0.00 0.00 4.34
1393 1439 7.621006 TGGATCGGAGGGAGTAAAATTATTA 57.379 36.000 0.00 0.00 0.00 0.98
1482 1528 6.073222 CCAGCCAATTCCGTTGTAATATACTC 60.073 42.308 0.00 0.00 36.01 2.59
1517 1563 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
1518 1564 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
1519 1565 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
1520 1566 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
1522 1568 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
1523 1569 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
1526 1572 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
1527 1573 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
1528 1574 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
1529 1575 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
1538 1584 9.582431 TCCGTATTTAGACAAATCTAAGACAAG 57.418 33.333 9.81 3.88 45.93 3.16
1540 1586 9.529325 CATCCGTATTTAGACAAATCTAAGACA 57.471 33.333 9.81 0.00 45.93 3.41
1541 1587 9.530633 ACATCCGTATTTAGACAAATCTAAGAC 57.469 33.333 0.00 0.83 45.93 3.01
1552 1598 9.752274 CGTAACTAGATACATCCGTATTTAGAC 57.248 37.037 13.92 5.26 41.85 2.59
1553 1599 9.494271 ACGTAACTAGATACATCCGTATTTAGA 57.506 33.333 13.92 0.00 41.85 2.10
1556 1602 9.807649 AAAACGTAACTAGATACATCCGTATTT 57.192 29.630 10.40 4.25 38.48 1.40
1559 1605 9.109393 ACTAAAACGTAACTAGATACATCCGTA 57.891 33.333 10.40 0.00 0.00 4.02
1560 1606 7.912250 CACTAAAACGTAACTAGATACATCCGT 59.088 37.037 10.40 0.16 0.00 4.69
1561 1607 7.912250 ACACTAAAACGTAACTAGATACATCCG 59.088 37.037 10.40 0.00 0.00 4.18
1605 1651 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
1606 1652 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
1608 1654 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
1609 1655 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
1610 1656 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
1611 1657 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
1613 1659 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
1615 1661 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
1617 1663 3.146847 ACTCCGTCCCAAAATTCTTGTC 58.853 45.455 0.00 0.00 0.00 3.18
1618 1664 3.223674 ACTCCGTCCCAAAATTCTTGT 57.776 42.857 0.00 0.00 0.00 3.16
1620 1666 5.278808 GCTAAAACTCCGTCCCAAAATTCTT 60.279 40.000 0.00 0.00 0.00 2.52
1621 1667 4.217767 GCTAAAACTCCGTCCCAAAATTCT 59.782 41.667 0.00 0.00 0.00 2.40
1622 1668 4.482386 GCTAAAACTCCGTCCCAAAATTC 58.518 43.478 0.00 0.00 0.00 2.17
1623 1669 3.257375 GGCTAAAACTCCGTCCCAAAATT 59.743 43.478 0.00 0.00 0.00 1.82
1624 1670 2.823747 GGCTAAAACTCCGTCCCAAAAT 59.176 45.455 0.00 0.00 0.00 1.82
1629 1675 1.134580 GGTAGGCTAAAACTCCGTCCC 60.135 57.143 0.00 0.00 0.00 4.46
1630 1676 1.134580 GGGTAGGCTAAAACTCCGTCC 60.135 57.143 0.00 0.00 0.00 4.79
1631 1677 1.134580 GGGGTAGGCTAAAACTCCGTC 60.135 57.143 0.00 0.00 0.00 4.79
1633 1679 0.906775 TGGGGTAGGCTAAAACTCCG 59.093 55.000 0.00 0.00 39.28 4.63
1634 1680 2.307980 AGTTGGGGTAGGCTAAAACTCC 59.692 50.000 0.00 0.00 36.73 3.85
1635 1681 3.715638 AGTTGGGGTAGGCTAAAACTC 57.284 47.619 0.00 0.00 0.00 3.01
1636 1682 3.139584 ACAAGTTGGGGTAGGCTAAAACT 59.860 43.478 7.96 1.78 0.00 2.66
1637 1683 3.493334 ACAAGTTGGGGTAGGCTAAAAC 58.507 45.455 7.96 0.00 0.00 2.43
1642 1688 1.995376 CAAACAAGTTGGGGTAGGCT 58.005 50.000 7.96 0.00 33.18 4.58
1651 1697 3.636764 AGCCTTTAGTCCCAAACAAGTTG 59.363 43.478 0.00 0.00 36.94 3.16
1652 1698 3.910989 AGCCTTTAGTCCCAAACAAGTT 58.089 40.909 0.00 0.00 0.00 2.66
1653 1699 3.595190 AGCCTTTAGTCCCAAACAAGT 57.405 42.857 0.00 0.00 0.00 3.16
1654 1700 4.099419 ACAAAGCCTTTAGTCCCAAACAAG 59.901 41.667 0.00 0.00 0.00 3.16
1656 1702 3.637769 ACAAAGCCTTTAGTCCCAAACA 58.362 40.909 0.00 0.00 0.00 2.83
1657 1703 4.142026 ACAACAAAGCCTTTAGTCCCAAAC 60.142 41.667 0.00 0.00 0.00 2.93
1658 1704 4.027437 ACAACAAAGCCTTTAGTCCCAAA 58.973 39.130 0.00 0.00 0.00 3.28
1659 1705 3.637769 ACAACAAAGCCTTTAGTCCCAA 58.362 40.909 0.00 0.00 0.00 4.12
1661 1707 3.383505 ACAACAACAAAGCCTTTAGTCCC 59.616 43.478 0.00 0.00 0.00 4.46
1662 1708 4.649088 ACAACAACAAAGCCTTTAGTCC 57.351 40.909 0.00 0.00 0.00 3.85
1663 1709 6.961359 AAAACAACAACAAAGCCTTTAGTC 57.039 33.333 0.00 0.00 0.00 2.59
1684 1730 9.802039 ATTATCTACTCCCTACAACAACAAAAA 57.198 29.630 0.00 0.00 0.00 1.94
1691 1737 9.656323 ACTCATTATTATCTACTCCCTACAACA 57.344 33.333 0.00 0.00 0.00 3.33
1961 2008 9.823647 TTCTTGATCATAAGATAACAGGAGTTC 57.176 33.333 0.00 0.00 36.63 3.01
2028 2075 3.829601 CCTACCAGCCTAGAAGACATAGG 59.170 52.174 0.00 0.00 42.41 2.57
2031 2078 3.689872 TCCTACCAGCCTAGAAGACAT 57.310 47.619 0.00 0.00 0.00 3.06
2033 2080 3.131400 CAGTTCCTACCAGCCTAGAAGAC 59.869 52.174 0.00 0.00 0.00 3.01
2034 2081 3.366396 CAGTTCCTACCAGCCTAGAAGA 58.634 50.000 0.00 0.00 0.00 2.87
2035 2082 2.432510 CCAGTTCCTACCAGCCTAGAAG 59.567 54.545 0.00 0.00 0.00 2.85
2036 2083 2.043939 TCCAGTTCCTACCAGCCTAGAA 59.956 50.000 0.00 0.00 0.00 2.10
2037 2084 1.644337 TCCAGTTCCTACCAGCCTAGA 59.356 52.381 0.00 0.00 0.00 2.43
2039 2086 2.679082 GATCCAGTTCCTACCAGCCTA 58.321 52.381 0.00 0.00 0.00 3.93
2313 2386 6.998074 TGTGGCCCAGTTTATCTTATCATTAG 59.002 38.462 0.00 0.00 0.00 1.73
2536 2610 4.082523 CGGACCACGTCTGCCCAT 62.083 66.667 0.00 0.00 37.93 4.00
2550 2624 2.514592 CGAGCCCTACGTACCGGA 60.515 66.667 9.46 0.00 0.00 5.14
2791 2867 2.050269 CCACAAGACCTCCAGACGT 58.950 57.895 0.00 0.00 0.00 4.34
2843 2919 2.998480 TTCTTCGGCGGCCTACCA 60.998 61.111 18.34 0.00 34.57 3.25
2914 2990 2.507102 ACATCGCGGACTGCTTCG 60.507 61.111 6.13 0.00 43.27 3.79
2920 2996 1.738099 GTGCAAGACATCGCGGACT 60.738 57.895 6.13 0.00 0.00 3.85
2929 3005 1.367471 CTCACCTCGGTGCAAGACA 59.633 57.895 11.21 0.00 45.04 3.41
3100 3177 1.244816 CACCTGGATCGCCTCGTATA 58.755 55.000 0.00 0.00 34.31 1.47
3224 3301 2.509336 CAGACGCCGCCGAGATTT 60.509 61.111 0.00 0.00 38.29 2.17
3434 3512 2.338015 GGTCTACACGACGGCCTCA 61.338 63.158 0.00 0.00 43.79 3.86
3457 3535 1.850289 TGGCTTGCTGGGTCCCTTA 60.850 57.895 10.00 0.00 0.00 2.69
3507 3586 2.386100 TGCCCATCCACCAGATCCC 61.386 63.158 0.00 0.00 30.59 3.85
3536 3615 2.418910 CCTGAGCATCCCGACGACT 61.419 63.158 0.00 0.00 0.00 4.18
3748 3833 1.204704 CAGGCATCTACACGTTCCTCA 59.795 52.381 0.00 0.00 0.00 3.86
3784 3869 1.758440 GACGGCTGCCATCTGGGATA 61.758 60.000 20.29 0.00 40.01 2.59
3812 3897 3.307906 CCCGTCGTCTTCACCCCA 61.308 66.667 0.00 0.00 0.00 4.96
4004 4090 0.537188 CCGCTACAACCTGAGACCAT 59.463 55.000 0.00 0.00 0.00 3.55
4021 4107 1.452108 GCCATCCCTCTTTCCACCG 60.452 63.158 0.00 0.00 0.00 4.94
4090 4179 1.029947 TACGCCATCTCTCTCGTGCA 61.030 55.000 0.00 0.00 36.50 4.57
4093 4182 0.820074 CCCTACGCCATCTCTCTCGT 60.820 60.000 0.00 0.00 38.75 4.18
4094 4183 1.519751 CCCCTACGCCATCTCTCTCG 61.520 65.000 0.00 0.00 0.00 4.04
4108 4229 4.908487 CCCTAGCCGTCGCCCCTA 62.908 72.222 0.00 0.00 34.57 3.53
4116 4240 0.396835 GGAGACCTAACCCTAGCCGT 60.397 60.000 0.00 0.00 0.00 5.68
4326 4459 1.077716 CTCCTTTACCCGGGCTTGG 60.078 63.158 24.08 17.99 0.00 3.61
4327 4460 1.077716 CCTCCTTTACCCGGGCTTG 60.078 63.158 24.08 8.51 0.00 4.01
4328 4461 1.229723 TCCTCCTTTACCCGGGCTT 60.230 57.895 24.08 4.08 0.00 4.35
4329 4462 1.689582 CTCCTCCTTTACCCGGGCT 60.690 63.158 24.08 10.93 0.00 5.19
4330 4463 2.743179 CCTCCTCCTTTACCCGGGC 61.743 68.421 24.08 0.00 0.00 6.13
4331 4464 2.070650 CCCTCCTCCTTTACCCGGG 61.071 68.421 22.25 22.25 0.00 5.73
4332 4465 0.912968 AACCCTCCTCCTTTACCCGG 60.913 60.000 0.00 0.00 0.00 5.73
4333 4466 0.252197 CAACCCTCCTCCTTTACCCG 59.748 60.000 0.00 0.00 0.00 5.28
4334 4467 1.004394 CACAACCCTCCTCCTTTACCC 59.996 57.143 0.00 0.00 0.00 3.69
4335 4468 1.982958 TCACAACCCTCCTCCTTTACC 59.017 52.381 0.00 0.00 0.00 2.85
4336 4469 4.141688 CCTATCACAACCCTCCTCCTTTAC 60.142 50.000 0.00 0.00 0.00 2.01
4337 4470 4.037927 CCTATCACAACCCTCCTCCTTTA 58.962 47.826 0.00 0.00 0.00 1.85
4338 4471 2.846827 CCTATCACAACCCTCCTCCTTT 59.153 50.000 0.00 0.00 0.00 3.11
4339 4472 2.482494 CCTATCACAACCCTCCTCCTT 58.518 52.381 0.00 0.00 0.00 3.36
4340 4473 1.972207 GCCTATCACAACCCTCCTCCT 60.972 57.143 0.00 0.00 0.00 3.69
4341 4474 0.470341 GCCTATCACAACCCTCCTCC 59.530 60.000 0.00 0.00 0.00 4.30
4342 4475 1.501582 AGCCTATCACAACCCTCCTC 58.498 55.000 0.00 0.00 0.00 3.71
4343 4476 1.561542 CAAGCCTATCACAACCCTCCT 59.438 52.381 0.00 0.00 0.00 3.69
4344 4477 1.408822 CCAAGCCTATCACAACCCTCC 60.409 57.143 0.00 0.00 0.00 4.30
4345 4478 2.019156 GCCAAGCCTATCACAACCCTC 61.019 57.143 0.00 0.00 0.00 4.30
4346 4479 0.034089 GCCAAGCCTATCACAACCCT 60.034 55.000 0.00 0.00 0.00 4.34
4347 4480 1.376609 CGCCAAGCCTATCACAACCC 61.377 60.000 0.00 0.00 0.00 4.11
4348 4481 0.392461 TCGCCAAGCCTATCACAACC 60.392 55.000 0.00 0.00 0.00 3.77
4349 4482 1.009829 CTCGCCAAGCCTATCACAAC 58.990 55.000 0.00 0.00 0.00 3.32
4350 4483 0.744414 GCTCGCCAAGCCTATCACAA 60.744 55.000 0.00 0.00 45.92 3.33
4351 4484 1.153369 GCTCGCCAAGCCTATCACA 60.153 57.895 0.00 0.00 45.92 3.58
4352 4485 3.724494 GCTCGCCAAGCCTATCAC 58.276 61.111 0.00 0.00 45.92 3.06
4362 4495 0.308376 GTTTTTACGTTGGCTCGCCA 59.692 50.000 6.52 6.52 45.63 5.69
4363 4496 0.589708 AGTTTTTACGTTGGCTCGCC 59.410 50.000 0.00 0.00 0.00 5.54
4364 4497 2.723923 GCTAGTTTTTACGTTGGCTCGC 60.724 50.000 0.00 0.00 0.00 5.03
4365 4498 2.159747 GGCTAGTTTTTACGTTGGCTCG 60.160 50.000 0.00 1.70 0.00 5.03
4366 4499 2.809696 TGGCTAGTTTTTACGTTGGCTC 59.190 45.455 0.00 0.00 0.00 4.70
4367 4500 2.812011 CTGGCTAGTTTTTACGTTGGCT 59.188 45.455 0.00 0.00 0.00 4.75
4368 4501 2.551032 ACTGGCTAGTTTTTACGTTGGC 59.449 45.455 0.00 0.00 31.66 4.52
4369 4502 3.187842 GGACTGGCTAGTTTTTACGTTGG 59.812 47.826 3.47 0.00 37.25 3.77
4370 4503 3.187842 GGGACTGGCTAGTTTTTACGTTG 59.812 47.826 3.47 0.00 37.25 4.10
4371 4504 3.181452 TGGGACTGGCTAGTTTTTACGTT 60.181 43.478 3.47 0.00 37.25 3.99
4372 4505 2.369532 TGGGACTGGCTAGTTTTTACGT 59.630 45.455 3.47 0.00 37.25 3.57
4373 4506 3.048337 TGGGACTGGCTAGTTTTTACG 57.952 47.619 3.47 0.00 37.25 3.18
4374 4507 5.123936 CCTATGGGACTGGCTAGTTTTTAC 58.876 45.833 3.47 0.00 37.25 2.01
4375 4508 4.786454 ACCTATGGGACTGGCTAGTTTTTA 59.214 41.667 3.47 0.00 37.25 1.52
4376 4509 3.591977 ACCTATGGGACTGGCTAGTTTTT 59.408 43.478 3.47 0.00 37.25 1.94
4377 4510 3.190439 ACCTATGGGACTGGCTAGTTTT 58.810 45.455 3.47 0.00 37.25 2.43
4378 4511 2.846950 ACCTATGGGACTGGCTAGTTT 58.153 47.619 3.47 0.00 37.25 2.66
4379 4512 2.570386 ACCTATGGGACTGGCTAGTT 57.430 50.000 3.47 0.00 37.25 2.24
4380 4513 3.142217 TCATACCTATGGGACTGGCTAGT 59.858 47.826 0.69 0.69 35.65 2.57
4381 4514 3.779444 TCATACCTATGGGACTGGCTAG 58.221 50.000 0.25 0.00 34.50 3.42
4382 4515 3.915346 TCATACCTATGGGACTGGCTA 57.085 47.619 0.25 0.00 34.50 3.93
4383 4516 2.795291 TCATACCTATGGGACTGGCT 57.205 50.000 0.25 0.00 34.50 4.75
4384 4517 3.477530 GTTTCATACCTATGGGACTGGC 58.522 50.000 0.25 0.00 34.50 4.85
4385 4518 3.181443 GGGTTTCATACCTATGGGACTGG 60.181 52.174 0.25 0.00 46.86 4.00
4386 4519 3.458118 TGGGTTTCATACCTATGGGACTG 59.542 47.826 0.25 0.00 46.86 3.51
4387 4520 3.743132 TGGGTTTCATACCTATGGGACT 58.257 45.455 0.25 0.00 46.86 3.85
4388 4521 4.724279 ATGGGTTTCATACCTATGGGAC 57.276 45.455 0.25 0.00 45.57 4.46
4389 4522 5.194740 TCAAATGGGTTTCATACCTATGGGA 59.805 40.000 0.25 0.00 46.51 4.37
4390 4523 5.454062 TCAAATGGGTTTCATACCTATGGG 58.546 41.667 0.00 0.00 46.51 4.00
4391 4524 5.010012 GCTCAAATGGGTTTCATACCTATGG 59.990 44.000 0.00 0.00 46.51 2.74
4392 4525 5.277974 CGCTCAAATGGGTTTCATACCTATG 60.278 44.000 0.00 0.00 46.51 2.23
4394 4527 4.080807 TCGCTCAAATGGGTTTCATACCTA 60.081 41.667 0.00 0.00 46.86 3.08
4395 4528 3.016736 CGCTCAAATGGGTTTCATACCT 58.983 45.455 0.00 0.00 46.86 3.08
4396 4529 3.013921 TCGCTCAAATGGGTTTCATACC 58.986 45.455 0.00 0.00 46.99 2.73
4397 4530 3.938963 TCTCGCTCAAATGGGTTTCATAC 59.061 43.478 0.00 0.00 34.44 2.39
4398 4531 4.191544 CTCTCGCTCAAATGGGTTTCATA 58.808 43.478 0.00 0.00 34.44 2.15
4399 4532 3.012518 CTCTCGCTCAAATGGGTTTCAT 58.987 45.455 0.00 0.00 37.79 2.57
4400 4533 2.224523 ACTCTCGCTCAAATGGGTTTCA 60.225 45.455 0.00 0.00 0.00 2.69
4401 4534 2.160417 CACTCTCGCTCAAATGGGTTTC 59.840 50.000 0.00 0.00 0.00 2.78
4402 4535 2.154462 CACTCTCGCTCAAATGGGTTT 58.846 47.619 0.00 0.00 0.00 3.27
4403 4536 1.611673 CCACTCTCGCTCAAATGGGTT 60.612 52.381 0.00 0.00 0.00 4.11
4404 4537 0.036010 CCACTCTCGCTCAAATGGGT 60.036 55.000 0.00 0.00 0.00 4.51
4405 4538 0.036010 ACCACTCTCGCTCAAATGGG 60.036 55.000 0.00 0.00 0.00 4.00
4406 4539 2.093973 AGTACCACTCTCGCTCAAATGG 60.094 50.000 0.00 0.00 0.00 3.16
4407 4540 3.238108 AGTACCACTCTCGCTCAAATG 57.762 47.619 0.00 0.00 0.00 2.32
4408 4541 3.381908 CCTAGTACCACTCTCGCTCAAAT 59.618 47.826 0.00 0.00 0.00 2.32
4409 4542 2.753452 CCTAGTACCACTCTCGCTCAAA 59.247 50.000 0.00 0.00 0.00 2.69
4410 4543 2.026542 TCCTAGTACCACTCTCGCTCAA 60.027 50.000 0.00 0.00 0.00 3.02
4411 4544 1.558294 TCCTAGTACCACTCTCGCTCA 59.442 52.381 0.00 0.00 0.00 4.26
4412 4545 2.328819 TCCTAGTACCACTCTCGCTC 57.671 55.000 0.00 0.00 0.00 5.03
4413 4546 2.577700 CATCCTAGTACCACTCTCGCT 58.422 52.381 0.00 0.00 0.00 4.93
4414 4547 1.609555 CCATCCTAGTACCACTCTCGC 59.390 57.143 0.00 0.00 0.00 5.03
4415 4548 2.231529 CCCATCCTAGTACCACTCTCG 58.768 57.143 0.00 0.00 0.00 4.04
4416 4549 2.959707 CACCCATCCTAGTACCACTCTC 59.040 54.545 0.00 0.00 0.00 3.20
4417 4550 2.585900 TCACCCATCCTAGTACCACTCT 59.414 50.000 0.00 0.00 0.00 3.24
4418 4551 2.694109 GTCACCCATCCTAGTACCACTC 59.306 54.545 0.00 0.00 0.00 3.51
4419 4552 2.626149 GGTCACCCATCCTAGTACCACT 60.626 54.545 0.00 0.00 0.00 4.00
4420 4553 1.761198 GGTCACCCATCCTAGTACCAC 59.239 57.143 0.00 0.00 0.00 4.16
4421 4554 1.649633 AGGTCACCCATCCTAGTACCA 59.350 52.381 0.00 0.00 31.66 3.25
4422 4555 2.317973 GAGGTCACCCATCCTAGTACC 58.682 57.143 0.00 0.00 33.83 3.34
4423 4556 2.091222 AGGAGGTCACCCATCCTAGTAC 60.091 54.545 2.60 0.00 36.91 2.73
4424 4557 2.091278 CAGGAGGTCACCCATCCTAGTA 60.091 54.545 4.27 0.00 36.69 1.82
4425 4558 1.019650 AGGAGGTCACCCATCCTAGT 58.980 55.000 2.60 0.00 36.91 2.57
4426 4559 1.418334 CAGGAGGTCACCCATCCTAG 58.582 60.000 4.27 0.00 36.69 3.02
4427 4560 0.031111 CCAGGAGGTCACCCATCCTA 60.031 60.000 4.27 0.00 36.69 2.94
4428 4561 1.307343 CCAGGAGGTCACCCATCCT 60.307 63.158 0.00 0.00 38.30 3.24
4429 4562 2.378634 CCCAGGAGGTCACCCATCC 61.379 68.421 0.00 0.00 0.00 3.51
4430 4563 0.914417 TTCCCAGGAGGTCACCCATC 60.914 60.000 0.00 0.00 36.75 3.51
4431 4564 0.916358 CTTCCCAGGAGGTCACCCAT 60.916 60.000 0.00 0.00 36.75 4.00
4432 4565 1.538876 CTTCCCAGGAGGTCACCCA 60.539 63.158 0.00 0.00 36.75 4.51
4433 4566 1.539124 ACTTCCCAGGAGGTCACCC 60.539 63.158 0.00 0.00 36.75 4.61
4434 4567 1.984020 GACTTCCCAGGAGGTCACC 59.016 63.158 20.66 0.00 46.32 4.02
4437 4570 0.615850 CAAGGACTTCCCAGGAGGTC 59.384 60.000 18.15 18.15 46.33 3.85
4438 4571 0.104409 ACAAGGACTTCCCAGGAGGT 60.104 55.000 0.31 0.31 37.15 3.85
4439 4572 0.326264 CACAAGGACTTCCCAGGAGG 59.674 60.000 0.00 0.00 37.41 4.30
4440 4573 1.352083 TCACAAGGACTTCCCAGGAG 58.648 55.000 0.00 0.00 37.41 3.69
4441 4574 1.814429 TTCACAAGGACTTCCCAGGA 58.186 50.000 0.00 0.00 37.41 3.86
4442 4575 2.508526 CTTTCACAAGGACTTCCCAGG 58.491 52.381 0.00 0.00 37.41 4.45
4458 4591 6.890268 ACAACCCTTAGATATGAAACCCTTTC 59.110 38.462 0.00 0.00 40.08 2.62
4459 4592 6.663523 CACAACCCTTAGATATGAAACCCTTT 59.336 38.462 0.00 0.00 0.00 3.11
4460 4593 6.011981 TCACAACCCTTAGATATGAAACCCTT 60.012 38.462 0.00 0.00 0.00 3.95
4461 4594 5.491078 TCACAACCCTTAGATATGAAACCCT 59.509 40.000 0.00 0.00 0.00 4.34
4462 4595 5.751586 TCACAACCCTTAGATATGAAACCC 58.248 41.667 0.00 0.00 0.00 4.11
4463 4596 7.661847 CCTATCACAACCCTTAGATATGAAACC 59.338 40.741 0.00 0.00 0.00 3.27
4464 4597 7.173390 GCCTATCACAACCCTTAGATATGAAAC 59.827 40.741 0.00 0.00 0.00 2.78
4465 4598 7.072454 AGCCTATCACAACCCTTAGATATGAAA 59.928 37.037 0.00 0.00 0.00 2.69
4466 4599 6.558775 AGCCTATCACAACCCTTAGATATGAA 59.441 38.462 0.00 0.00 0.00 2.57
4467 4600 6.084738 AGCCTATCACAACCCTTAGATATGA 58.915 40.000 0.00 0.00 0.00 2.15
4468 4601 6.365970 AGCCTATCACAACCCTTAGATATG 57.634 41.667 0.00 0.00 0.00 1.78
4469 4602 6.240002 CCAAGCCTATCACAACCCTTAGATAT 60.240 42.308 0.00 0.00 0.00 1.63
4470 4603 5.071788 CCAAGCCTATCACAACCCTTAGATA 59.928 44.000 0.00 0.00 0.00 1.98
4471 4604 4.141390 CCAAGCCTATCACAACCCTTAGAT 60.141 45.833 0.00 0.00 0.00 1.98
4472 4605 3.199946 CCAAGCCTATCACAACCCTTAGA 59.800 47.826 0.00 0.00 0.00 2.10
4473 4606 3.545703 CCAAGCCTATCACAACCCTTAG 58.454 50.000 0.00 0.00 0.00 2.18
4474 4607 2.356741 GCCAAGCCTATCACAACCCTTA 60.357 50.000 0.00 0.00 0.00 2.69
4475 4608 1.616994 GCCAAGCCTATCACAACCCTT 60.617 52.381 0.00 0.00 0.00 3.95
4476 4609 0.034089 GCCAAGCCTATCACAACCCT 60.034 55.000 0.00 0.00 0.00 4.34
4477 4610 1.376609 CGCCAAGCCTATCACAACCC 61.377 60.000 0.00 0.00 0.00 4.11
4478 4611 0.392461 TCGCCAAGCCTATCACAACC 60.392 55.000 0.00 0.00 0.00 3.77
4479 4612 1.009829 CTCGCCAAGCCTATCACAAC 58.990 55.000 0.00 0.00 0.00 3.32
4480 4613 0.744414 GCTCGCCAAGCCTATCACAA 60.744 55.000 0.00 0.00 45.92 3.33
4481 4614 1.153369 GCTCGCCAAGCCTATCACA 60.153 57.895 0.00 0.00 45.92 3.58
4482 4615 3.724494 GCTCGCCAAGCCTATCAC 58.276 61.111 0.00 0.00 45.92 3.06
4492 4625 0.308376 GTTTTTACGTTGGCTCGCCA 59.692 50.000 6.52 6.52 45.63 5.69
4493 4626 0.589708 AGTTTTTACGTTGGCTCGCC 59.410 50.000 0.00 0.00 0.00 5.54
4494 4627 2.723923 GCTAGTTTTTACGTTGGCTCGC 60.724 50.000 0.00 0.00 0.00 5.03
4495 4628 2.159747 GGCTAGTTTTTACGTTGGCTCG 60.160 50.000 0.00 1.70 0.00 5.03
4496 4629 2.809696 TGGCTAGTTTTTACGTTGGCTC 59.190 45.455 0.00 0.00 0.00 4.70
4497 4630 2.812011 CTGGCTAGTTTTTACGTTGGCT 59.188 45.455 0.00 0.00 0.00 4.75
4498 4631 2.551032 ACTGGCTAGTTTTTACGTTGGC 59.449 45.455 0.00 0.00 31.66 4.52
4499 4632 4.062991 AGACTGGCTAGTTTTTACGTTGG 58.937 43.478 3.47 0.00 37.25 3.77
4500 4633 5.668558 AAGACTGGCTAGTTTTTACGTTG 57.331 39.130 3.47 0.00 37.25 4.10
4501 4634 6.459161 CCAAAAGACTGGCTAGTTTTTACGTT 60.459 38.462 17.28 1.45 39.50 3.99
4502 4635 5.008316 CCAAAAGACTGGCTAGTTTTTACGT 59.992 40.000 17.28 1.78 39.50 3.57
4503 4636 5.449304 CCAAAAGACTGGCTAGTTTTTACG 58.551 41.667 17.28 12.06 39.50 3.18
4504 4637 5.301045 ACCCAAAAGACTGGCTAGTTTTTAC 59.699 40.000 17.28 0.00 39.50 2.01
4505 4638 5.451354 ACCCAAAAGACTGGCTAGTTTTTA 58.549 37.500 17.28 0.00 39.50 1.52
4506 4639 4.286707 ACCCAAAAGACTGGCTAGTTTTT 58.713 39.130 12.22 12.22 41.44 1.94
4507 4640 3.910989 ACCCAAAAGACTGGCTAGTTTT 58.089 40.909 3.47 1.40 37.25 2.43
4508 4641 3.595190 ACCCAAAAGACTGGCTAGTTT 57.405 42.857 3.47 0.00 37.25 2.66
4509 4642 4.288626 TCATACCCAAAAGACTGGCTAGTT 59.711 41.667 3.47 0.00 37.25 2.24
4510 4643 3.844211 TCATACCCAAAAGACTGGCTAGT 59.156 43.478 0.69 0.69 40.66 2.57
4511 4644 4.487714 TCATACCCAAAAGACTGGCTAG 57.512 45.455 0.00 0.00 34.88 3.42
4512 4645 4.919774 TTCATACCCAAAAGACTGGCTA 57.080 40.909 0.00 0.00 34.88 3.93
4513 4646 3.806949 TTCATACCCAAAAGACTGGCT 57.193 42.857 0.00 0.00 34.88 4.75
4514 4647 3.056821 GGTTTCATACCCAAAAGACTGGC 60.057 47.826 0.00 0.00 41.43 4.85
4515 4648 4.783764 GGTTTCATACCCAAAAGACTGG 57.216 45.455 0.00 0.00 41.43 4.00
4536 4669 2.431057 AGTACTACTCTCGCCCAAATGG 59.569 50.000 0.00 0.00 37.09 3.16
4537 4670 3.802948 AGTACTACTCTCGCCCAAATG 57.197 47.619 0.00 0.00 0.00 2.32
4538 4671 3.890147 CCTAGTACTACTCTCGCCCAAAT 59.110 47.826 0.00 0.00 0.00 2.32
4539 4672 3.054139 TCCTAGTACTACTCTCGCCCAAA 60.054 47.826 0.00 0.00 0.00 3.28
4540 4673 2.507058 TCCTAGTACTACTCTCGCCCAA 59.493 50.000 0.00 0.00 0.00 4.12
4541 4674 2.121948 TCCTAGTACTACTCTCGCCCA 58.878 52.381 0.00 0.00 0.00 5.36
4542 4675 2.926778 TCCTAGTACTACTCTCGCCC 57.073 55.000 0.00 0.00 0.00 6.13
4543 4676 3.075884 CCATCCTAGTACTACTCTCGCC 58.924 54.545 0.00 0.00 0.00 5.54
4544 4677 3.075884 CCCATCCTAGTACTACTCTCGC 58.924 54.545 0.00 0.00 0.00 5.03
4545 4678 4.066490 CACCCATCCTAGTACTACTCTCG 58.934 52.174 0.00 0.00 0.00 4.04
4546 4679 5.065235 GTCACCCATCCTAGTACTACTCTC 58.935 50.000 0.00 0.00 0.00 3.20
4547 4680 4.141205 GGTCACCCATCCTAGTACTACTCT 60.141 50.000 0.00 0.00 0.00 3.24
4548 4681 4.141205 AGGTCACCCATCCTAGTACTACTC 60.141 50.000 0.00 0.00 31.66 2.59
4549 4682 3.792684 AGGTCACCCATCCTAGTACTACT 59.207 47.826 0.00 0.00 31.66 2.57
4550 4683 4.143543 GAGGTCACCCATCCTAGTACTAC 58.856 52.174 0.00 0.00 33.83 2.73
4551 4684 3.139770 GGAGGTCACCCATCCTAGTACTA 59.860 52.174 1.89 1.89 33.83 1.82
4552 4685 2.091222 GGAGGTCACCCATCCTAGTACT 60.091 54.545 0.00 0.00 33.83 2.73
4553 4686 2.091222 AGGAGGTCACCCATCCTAGTAC 60.091 54.545 2.60 0.00 36.91 2.73
4554 4687 2.091278 CAGGAGGTCACCCATCCTAGTA 60.091 54.545 4.27 0.00 36.69 1.82
4555 4688 1.019650 AGGAGGTCACCCATCCTAGT 58.980 55.000 2.60 0.00 36.91 2.57
4556 4689 1.418334 CAGGAGGTCACCCATCCTAG 58.582 60.000 4.27 0.00 36.69 3.02
4557 4690 0.031111 CCAGGAGGTCACCCATCCTA 60.031 60.000 4.27 0.00 36.69 2.94
4558 4691 1.307343 CCAGGAGGTCACCCATCCT 60.307 63.158 0.00 0.00 38.30 3.24
4559 4692 2.378634 CCCAGGAGGTCACCCATCC 61.379 68.421 0.00 0.00 0.00 3.51
4560 4693 0.914417 TTCCCAGGAGGTCACCCATC 60.914 60.000 0.00 0.00 36.75 3.51
4561 4694 0.916358 CTTCCCAGGAGGTCACCCAT 60.916 60.000 0.00 0.00 36.75 4.00
4562 4695 1.538876 CTTCCCAGGAGGTCACCCA 60.539 63.158 0.00 0.00 36.75 4.51
4563 4696 1.539124 ACTTCCCAGGAGGTCACCC 60.539 63.158 0.00 0.00 36.75 4.61
4564 4697 1.984020 GACTTCCCAGGAGGTCACC 59.016 63.158 20.66 0.00 46.32 4.02
4567 4700 1.324005 CGAGGACTTCCCAGGAGGTC 61.324 65.000 18.15 18.15 46.33 3.85
4568 4701 1.305381 CGAGGACTTCCCAGGAGGT 60.305 63.158 0.31 0.31 37.15 3.85
4569 4702 1.305381 ACGAGGACTTCCCAGGAGG 60.305 63.158 0.00 0.00 37.41 4.30
4570 4703 0.612174 TCACGAGGACTTCCCAGGAG 60.612 60.000 0.00 0.00 37.41 3.69
4571 4704 0.178944 TTCACGAGGACTTCCCAGGA 60.179 55.000 0.00 0.00 37.41 3.86
4572 4705 0.685097 TTTCACGAGGACTTCCCAGG 59.315 55.000 0.00 0.00 37.41 4.45
4573 4706 1.338200 CCTTTCACGAGGACTTCCCAG 60.338 57.143 0.00 0.00 39.25 4.45
4574 4707 0.685097 CCTTTCACGAGGACTTCCCA 59.315 55.000 0.00 0.00 39.25 4.37
4575 4708 0.036294 CCCTTTCACGAGGACTTCCC 60.036 60.000 0.00 0.00 39.25 3.97
4576 4709 0.685660 ACCCTTTCACGAGGACTTCC 59.314 55.000 0.00 0.00 39.25 3.46
4577 4710 2.545537 AACCCTTTCACGAGGACTTC 57.454 50.000 0.00 0.00 39.25 3.01
4578 4711 2.171870 TGAAACCCTTTCACGAGGACTT 59.828 45.455 0.00 0.00 44.21 3.01
4579 4712 1.766496 TGAAACCCTTTCACGAGGACT 59.234 47.619 0.00 0.00 44.21 3.85
4580 4713 2.249844 TGAAACCCTTTCACGAGGAC 57.750 50.000 0.00 0.00 44.21 3.85
4588 4721 6.231951 GGTAGGCTAGATATGAAACCCTTTC 58.768 44.000 0.00 0.00 40.08 2.62
4589 4722 5.073280 GGGTAGGCTAGATATGAAACCCTTT 59.927 44.000 8.73 0.00 41.75 3.11
4590 4723 4.597940 GGGTAGGCTAGATATGAAACCCTT 59.402 45.833 8.73 0.00 41.75 3.95
4591 4724 4.168883 GGGTAGGCTAGATATGAAACCCT 58.831 47.826 8.73 0.00 41.75 4.34
4592 4725 3.263681 GGGGTAGGCTAGATATGAAACCC 59.736 52.174 7.65 7.65 43.82 4.11
4593 4726 3.908103 TGGGGTAGGCTAGATATGAAACC 59.092 47.826 0.00 0.00 0.00 3.27
4594 4727 5.071923 AGTTGGGGTAGGCTAGATATGAAAC 59.928 44.000 0.00 0.00 0.00 2.78
4595 4728 5.224441 AGTTGGGGTAGGCTAGATATGAAA 58.776 41.667 0.00 0.00 0.00 2.69
4596 4729 4.827789 AGTTGGGGTAGGCTAGATATGAA 58.172 43.478 0.00 0.00 0.00 2.57
4597 4730 4.487282 AGTTGGGGTAGGCTAGATATGA 57.513 45.455 0.00 0.00 0.00 2.15
4598 4731 4.348168 ACAAGTTGGGGTAGGCTAGATATG 59.652 45.833 7.96 0.00 0.00 1.78
4599 4732 4.567857 ACAAGTTGGGGTAGGCTAGATAT 58.432 43.478 7.96 0.00 0.00 1.63
4600 4733 4.003584 ACAAGTTGGGGTAGGCTAGATA 57.996 45.455 7.96 0.00 0.00 1.98
4601 4734 2.846950 ACAAGTTGGGGTAGGCTAGAT 58.153 47.619 7.96 0.00 0.00 1.98
4602 4735 2.337359 ACAAGTTGGGGTAGGCTAGA 57.663 50.000 7.96 0.00 0.00 2.43
4603 4736 3.081804 CAAACAAGTTGGGGTAGGCTAG 58.918 50.000 7.96 0.00 33.18 3.42
4604 4737 3.149005 CAAACAAGTTGGGGTAGGCTA 57.851 47.619 7.96 0.00 33.18 3.93
4605 4738 1.995376 CAAACAAGTTGGGGTAGGCT 58.005 50.000 7.96 0.00 33.18 4.58
4614 4747 5.213891 AGCCTTTTATCCCAAACAAGTTG 57.786 39.130 0.00 0.00 36.94 3.16
4615 4748 5.508994 CGAAGCCTTTTATCCCAAACAAGTT 60.509 40.000 0.00 0.00 0.00 2.66
4616 4749 4.022329 CGAAGCCTTTTATCCCAAACAAGT 60.022 41.667 0.00 0.00 0.00 3.16
4617 4750 4.022329 ACGAAGCCTTTTATCCCAAACAAG 60.022 41.667 0.00 0.00 0.00 3.16
4618 4751 3.892588 ACGAAGCCTTTTATCCCAAACAA 59.107 39.130 0.00 0.00 0.00 2.83
4619 4752 3.492337 ACGAAGCCTTTTATCCCAAACA 58.508 40.909 0.00 0.00 0.00 2.83
4620 4753 5.182570 ACTTACGAAGCCTTTTATCCCAAAC 59.817 40.000 0.00 0.00 0.00 2.93
4621 4754 5.318630 ACTTACGAAGCCTTTTATCCCAAA 58.681 37.500 0.00 0.00 0.00 3.28
4622 4755 4.913784 ACTTACGAAGCCTTTTATCCCAA 58.086 39.130 0.00 0.00 0.00 4.12
4623 4756 4.563140 ACTTACGAAGCCTTTTATCCCA 57.437 40.909 0.00 0.00 0.00 4.37
4624 4757 5.055144 CCTACTTACGAAGCCTTTTATCCC 58.945 45.833 0.00 0.00 0.00 3.85
4625 4758 5.668471 ACCTACTTACGAAGCCTTTTATCC 58.332 41.667 0.00 0.00 0.00 2.59
4626 4759 7.978414 ACTTACCTACTTACGAAGCCTTTTATC 59.022 37.037 0.00 0.00 0.00 1.75
4627 4760 7.845037 ACTTACCTACTTACGAAGCCTTTTAT 58.155 34.615 0.00 0.00 0.00 1.40
4628 4761 7.232118 ACTTACCTACTTACGAAGCCTTTTA 57.768 36.000 0.00 0.00 0.00 1.52
4629 4762 6.106648 ACTTACCTACTTACGAAGCCTTTT 57.893 37.500 0.00 0.00 0.00 2.27
4630 4763 5.735285 ACTTACCTACTTACGAAGCCTTT 57.265 39.130 0.00 0.00 0.00 3.11
4631 4764 6.435591 ACTTACTTACCTACTTACGAAGCCTT 59.564 38.462 0.00 0.00 0.00 4.35
4632 4765 5.948758 ACTTACTTACCTACTTACGAAGCCT 59.051 40.000 0.00 0.00 0.00 4.58
4633 4766 6.201226 ACTTACTTACCTACTTACGAAGCC 57.799 41.667 0.00 0.00 0.00 4.35
4634 4767 8.669243 TCTTACTTACTTACCTACTTACGAAGC 58.331 37.037 0.00 0.00 0.00 3.86
4637 4770 9.726438 ACTTCTTACTTACTTACCTACTTACGA 57.274 33.333 0.00 0.00 0.00 3.43
4676 4809 4.082463 TCCAACAAGGTCAAGTTTTGTCAC 60.082 41.667 0.00 0.00 39.02 3.67
4677 4810 4.082845 TCCAACAAGGTCAAGTTTTGTCA 58.917 39.130 0.00 0.00 39.02 3.58
4682 4817 5.200483 TGATTCTCCAACAAGGTCAAGTTT 58.800 37.500 0.00 0.00 39.02 2.66
4690 4825 2.756760 CACCCATGATTCTCCAACAAGG 59.243 50.000 0.00 0.00 39.47 3.61
4782 4919 5.130145 CACCTCTTTCTCCTACCTGATGAAT 59.870 44.000 0.00 0.00 0.00 2.57
4970 5107 1.765314 GACATCCTGTGGGCTATCAGT 59.235 52.381 0.00 0.00 0.00 3.41
5081 5218 3.678072 TGCTGCATACGTTTGAGTAGAAC 59.322 43.478 10.37 0.00 0.00 3.01
5240 5380 4.332819 GGGTAAATGTGCACTACTTAGCAG 59.667 45.833 19.41 0.00 42.14 4.24
5339 5479 2.068519 CTGCATCAAGTCAACTACGCA 58.931 47.619 0.00 0.00 0.00 5.24
5444 5584 9.696917 CAGTTACATTTTGGAAAATCTTTAGCT 57.303 29.630 0.00 0.00 36.52 3.32
5614 5754 4.701956 AGGGCTGTTTCATAAATCAACG 57.298 40.909 0.00 0.00 0.00 4.10
5691 5831 2.997980 TGTTCTGTTGTCCTTGCTTCA 58.002 42.857 0.00 0.00 0.00 3.02
5723 5863 7.436118 TCTTGCTTTGATTGCTTTGAGTTTAT 58.564 30.769 0.00 0.00 0.00 1.40
5757 5897 5.086104 TCTGAAGAAAGGAGGTATTTCCG 57.914 43.478 0.00 0.00 42.29 4.30
5795 5935 4.377021 AGTTTTGCAATGTCGTCTCTACA 58.623 39.130 0.00 0.00 0.00 2.74
5816 5956 4.617995 CGCTGCTGAGGATCCTAATAGAAG 60.618 50.000 16.16 17.38 0.00 2.85
6007 6147 3.126171 TCATTGCCGTTTCTCCAATAACG 59.874 43.478 0.00 0.00 44.85 3.18
6439 6583 1.080434 GACACGAGCTCCTGGTGAC 60.080 63.158 22.21 14.56 41.56 3.67
6827 6971 1.666888 GCTTTTGGTTCATCTGGCACG 60.667 52.381 0.00 0.00 0.00 5.34
7345 7489 2.039480 TCAAGAAGCAGAATGTCTGGCT 59.961 45.455 7.34 2.62 44.43 4.75
7476 7620 0.305922 GACAATCTATGCGCCACTGC 59.694 55.000 4.18 0.00 0.00 4.40
7809 7953 9.573166 CAAATATAAGTTGGATGGAGGACAATA 57.427 33.333 0.00 0.00 0.00 1.90
7856 8002 9.804758 ACCTAATTGATAGAAAAGAGTACTTCG 57.195 33.333 0.00 0.00 32.56 3.79
8147 8299 7.876936 TCTATTGCCTATAGGAGTAATACGG 57.123 40.000 23.61 11.52 37.42 4.02
8237 8389 9.461312 TGTTCTTGTGGCATATCTATTTACTTT 57.539 29.630 0.00 0.00 0.00 2.66
8275 8429 6.068010 TGTCCACAAAAGATACCAAGTCATT 58.932 36.000 0.00 0.00 0.00 2.57
8276 8430 5.630121 TGTCCACAAAAGATACCAAGTCAT 58.370 37.500 0.00 0.00 0.00 3.06
8346 8500 2.832129 TCGCTTCCTGATCCTACAGTTT 59.168 45.455 0.00 0.00 36.30 2.66
8351 8505 2.365617 TCCATTCGCTTCCTGATCCTAC 59.634 50.000 0.00 0.00 0.00 3.18
8481 8635 2.505819 AGGTCACCATATGGAGTTGTCC 59.494 50.000 28.77 20.67 44.24 4.02
8496 8650 8.726988 TGCAAAGTATTTTACAGATTAGGTCAC 58.273 33.333 0.00 0.00 35.03 3.67
8549 8703 4.331443 TCGTTGCATAAATACACGATGCTT 59.669 37.500 3.56 0.00 45.04 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.