Multiple sequence alignment - TraesCS7A01G303000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G303000 chr7A 100.000 2930 0 0 1 2930 425627571 425630500 0.000000e+00 5411.0
1 TraesCS7A01G303000 chr7D 88.732 1988 155 34 834 2797 378149965 378151907 0.000000e+00 2366.0
2 TraesCS7A01G303000 chr7D 96.124 129 5 0 2802 2930 159427879 159427751 8.230000e-51 211.0
3 TraesCS7A01G303000 chr7B 95.127 1334 44 8 722 2040 372710774 372712101 0.000000e+00 2084.0
4 TraesCS7A01G303000 chr7B 84.097 698 101 6 1 691 372709875 372710569 0.000000e+00 665.0
5 TraesCS7A01G303000 chr7B 89.759 166 14 3 2766 2930 32004270 32004107 2.960000e-50 209.0
6 TraesCS7A01G303000 chr7B 100.000 28 0 0 252 279 71837437 71837464 5.000000e-03 52.8
7 TraesCS7A01G303000 chr2D 86.167 347 48 0 1511 1857 533778763 533778417 2.760000e-100 375.0
8 TraesCS7A01G303000 chr2D 96.124 129 5 0 2802 2930 498176704 498176576 8.230000e-51 211.0
9 TraesCS7A01G303000 chr2D 88.387 155 17 1 1013 1166 533779103 533778949 4.990000e-43 185.0
10 TraesCS7A01G303000 chr1A 75.000 608 110 17 56 627 549615245 549614644 2.920000e-60 243.0
11 TraesCS7A01G303000 chr3D 74.119 653 132 23 1 627 255395882 255396523 4.880000e-58 235.0
12 TraesCS7A01G303000 chr3B 73.920 648 136 18 1 627 377111997 377112632 2.270000e-56 230.0
13 TraesCS7A01G303000 chr3B 76.817 289 53 13 1 281 240589292 240589010 1.820000e-32 150.0
14 TraesCS7A01G303000 chr3A 95.556 135 6 0 2796 2930 183168543 183168677 1.770000e-52 217.0
15 TraesCS7A01G303000 chr6A 96.124 129 5 0 2802 2930 515688493 515688365 8.230000e-51 211.0
16 TraesCS7A01G303000 chr5A 96.124 129 5 0 2802 2930 296452315 296452187 8.230000e-51 211.0
17 TraesCS7A01G303000 chr1D 94.815 135 7 0 2796 2930 76416552 76416686 8.230000e-51 211.0
18 TraesCS7A01G303000 chr2A 91.503 153 11 2 2778 2930 337880709 337880859 2.960000e-50 209.0
19 TraesCS7A01G303000 chr5B 93.525 139 8 1 2789 2927 691810265 691810402 3.830000e-49 206.0
20 TraesCS7A01G303000 chr1B 95.918 49 2 0 2242 2290 65552492 65552444 2.420000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G303000 chr7A 425627571 425630500 2929 False 5411.0 5411 100.000 1 2930 1 chr7A.!!$F1 2929
1 TraesCS7A01G303000 chr7D 378149965 378151907 1942 False 2366.0 2366 88.732 834 2797 1 chr7D.!!$F1 1963
2 TraesCS7A01G303000 chr7B 372709875 372712101 2226 False 1374.5 2084 89.612 1 2040 2 chr7B.!!$F2 2039
3 TraesCS7A01G303000 chr2D 533778417 533779103 686 True 280.0 375 87.277 1013 1857 2 chr2D.!!$R2 844
4 TraesCS7A01G303000 chr1A 549614644 549615245 601 True 243.0 243 75.000 56 627 1 chr1A.!!$R1 571
5 TraesCS7A01G303000 chr3D 255395882 255396523 641 False 235.0 235 74.119 1 627 1 chr3D.!!$F1 626
6 TraesCS7A01G303000 chr3B 377111997 377112632 635 False 230.0 230 73.920 1 627 1 chr3B.!!$F1 626

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
325 365 0.17691 GGTAGTCAGCTCTTCCCTGC 59.823 60.0 0.0 0.0 0.0 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2217 2475 0.179048 ATCTGAATGCGCCGATCCAA 60.179 50.0 4.18 0.0 0.0 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 2.408565 CCTGTATCTTCCTTGGGCCTA 58.591 52.381 4.53 0.00 0.00 3.93
128 138 4.569180 CCCGCATGGATCCGGCTT 62.569 66.667 21.63 0.00 43.05 4.35
157 169 1.278985 ACCTTGATCCTGTGCGATTGA 59.721 47.619 0.00 0.00 0.00 2.57
221 233 2.361992 TCCTTGGAGCTCGGCGTA 60.362 61.111 6.85 0.00 0.00 4.42
243 268 0.914644 CCAGATGGACCAGTGGATGT 59.085 55.000 18.40 0.00 37.39 3.06
325 365 0.176910 GGTAGTCAGCTCTTCCCTGC 59.823 60.000 0.00 0.00 0.00 4.85
415 456 0.248498 CGTACGATGACGACCAGCAT 60.248 55.000 10.44 0.00 45.82 3.79
472 513 5.295292 CGGTGTCTAATTCTCCTTCGTAGTA 59.705 44.000 0.00 0.00 0.00 1.82
494 535 4.074526 GTCAGAGCCGGAGCAGCA 62.075 66.667 5.05 0.00 43.56 4.41
522 566 1.827789 GGCAAGTGGTTGAGTGGCA 60.828 57.895 0.00 0.00 35.46 4.92
574 618 2.028484 TGTGGGTTGAGTCGACGC 59.972 61.111 18.43 18.43 0.00 5.19
623 667 4.631131 TGCTCAGGATTTATGTATGACGG 58.369 43.478 0.00 0.00 0.00 4.79
627 671 6.419484 TCAGGATTTATGTATGACGGTGAT 57.581 37.500 0.00 0.00 0.00 3.06
628 672 6.223120 TCAGGATTTATGTATGACGGTGATG 58.777 40.000 0.00 0.00 0.00 3.07
630 674 4.754618 GGATTTATGTATGACGGTGATGCA 59.245 41.667 0.56 0.56 0.00 3.96
633 677 2.689553 TGTATGACGGTGATGCATGT 57.310 45.000 2.46 0.00 0.00 3.21
634 678 2.278854 TGTATGACGGTGATGCATGTG 58.721 47.619 2.46 0.00 0.00 3.21
637 681 0.250252 TGACGGTGATGCATGTGTGT 60.250 50.000 2.46 0.00 0.00 3.72
643 687 2.095567 GGTGATGCATGTGTGTTGTCTC 60.096 50.000 2.46 0.00 0.00 3.36
644 688 2.549329 GTGATGCATGTGTGTTGTCTCA 59.451 45.455 2.46 0.00 0.00 3.27
646 690 2.330440 TGCATGTGTGTTGTCTCAGT 57.670 45.000 0.00 0.00 0.00 3.41
647 691 3.467374 TGCATGTGTGTTGTCTCAGTA 57.533 42.857 0.00 0.00 0.00 2.74
652 696 3.202906 TGTGTGTTGTCTCAGTAAAGGC 58.797 45.455 0.00 0.00 0.00 4.35
658 703 5.529800 GTGTTGTCTCAGTAAAGGCCTTTTA 59.470 40.000 34.60 17.88 34.23 1.52
659 704 6.038936 GTGTTGTCTCAGTAAAGGCCTTTTAA 59.961 38.462 34.60 16.37 33.22 1.52
666 711 5.894964 TCAGTAAAGGCCTTTTAAAGTGGTT 59.105 36.000 34.60 10.13 33.22 3.67
672 717 2.538037 GCCTTTTAAAGTGGTTTGTGCG 59.462 45.455 3.91 0.00 0.00 5.34
674 719 2.873133 TTTAAAGTGGTTTGTGCGGG 57.127 45.000 0.00 0.00 0.00 6.13
682 727 1.629353 TGGTTTGTGCGGGGTATCTTA 59.371 47.619 0.00 0.00 0.00 2.10
691 736 2.888594 CGGGGTATCTTATATGTGCCG 58.111 52.381 0.00 0.00 0.00 5.69
692 737 2.629051 GGGGTATCTTATATGTGCCGC 58.371 52.381 0.00 0.00 0.00 6.53
694 739 3.522553 GGGTATCTTATATGTGCCGCTC 58.477 50.000 0.00 0.00 0.00 5.03
695 740 3.179830 GGTATCTTATATGTGCCGCTCG 58.820 50.000 0.00 0.00 0.00 5.03
710 755 2.285827 GCTCGGCGATTATGATAGCT 57.714 50.000 11.27 0.00 34.69 3.32
711 756 2.611518 GCTCGGCGATTATGATAGCTT 58.388 47.619 11.27 0.00 34.69 3.74
713 758 3.061429 GCTCGGCGATTATGATAGCTTTC 59.939 47.826 11.27 0.00 34.69 2.62
714 759 3.242518 TCGGCGATTATGATAGCTTTCG 58.757 45.455 4.99 0.00 34.69 3.46
716 761 3.059570 CGGCGATTATGATAGCTTTCGTC 59.940 47.826 0.00 0.00 34.69 4.20
718 763 4.090642 GGCGATTATGATAGCTTTCGTCAG 59.909 45.833 1.83 0.00 34.69 3.51
719 764 4.917998 GCGATTATGATAGCTTTCGTCAGA 59.082 41.667 1.83 0.00 31.96 3.27
720 765 5.574830 GCGATTATGATAGCTTTCGTCAGAT 59.425 40.000 1.83 0.00 31.96 2.90
748 967 6.558488 ATTAATTGGGCAATCTGGCTTTTA 57.442 33.333 0.00 0.00 43.20 1.52
751 970 2.446435 TGGGCAATCTGGCTTTTACTC 58.554 47.619 0.00 0.00 43.20 2.59
754 973 1.202188 GCAATCTGGCTTTTACTCGGC 60.202 52.381 0.00 0.00 0.00 5.54
765 984 4.766375 CTTTTACTCGGCTTTCCATCCTA 58.234 43.478 0.00 0.00 0.00 2.94
766 985 5.367945 TTTTACTCGGCTTTCCATCCTAT 57.632 39.130 0.00 0.00 0.00 2.57
775 994 4.453819 GGCTTTCCATCCTATCATTTCGAG 59.546 45.833 0.00 0.00 0.00 4.04
777 996 5.407995 GCTTTCCATCCTATCATTTCGAGAG 59.592 44.000 0.00 0.00 32.41 3.20
896 1116 4.690184 AAACGGTAAATAGGAAAAGCCG 57.310 40.909 0.00 0.00 43.43 5.52
899 1119 4.325972 ACGGTAAATAGGAAAAGCCGAAA 58.674 39.130 7.08 0.00 43.43 3.46
986 1206 3.092301 GTCATTTTCTTCCTTGGGAGGG 58.908 50.000 0.00 0.00 43.72 4.30
1238 1485 1.544691 GTTCACCCTCTACTCGCAGAA 59.455 52.381 0.00 0.00 34.09 3.02
1381 1628 0.249120 TGCAGACGATCCGGAACAAT 59.751 50.000 9.01 0.00 0.00 2.71
1451 1698 3.740128 ATCGCCGTGCTCATGTCCC 62.740 63.158 0.00 0.00 0.00 4.46
1870 2127 2.285743 GGGAGGAGGAACAGGGCT 60.286 66.667 0.00 0.00 0.00 5.19
1945 2202 1.120530 TTAGGTAGGTGGCTAGCTGC 58.879 55.000 15.72 10.61 38.04 5.25
1981 2238 5.649782 AGAATTTAATTGGCAGTCAGGTG 57.350 39.130 0.00 0.00 0.00 4.00
2022 2279 9.352191 GACTAGTGTCCTCTATAAATTACTCCA 57.648 37.037 0.00 0.00 37.24 3.86
2028 2285 7.289317 TGTCCTCTATAAATTACTCCATCCGTT 59.711 37.037 0.00 0.00 0.00 4.44
2030 2287 7.728981 TCCTCTATAAATTACTCCATCCGTTCT 59.271 37.037 0.00 0.00 0.00 3.01
2031 2288 7.815068 CCTCTATAAATTACTCCATCCGTTCTG 59.185 40.741 0.00 0.00 0.00 3.02
2040 2297 5.661458 ACTCCATCCGTTCTGTAATGTAAG 58.339 41.667 0.00 0.00 0.00 2.34
2041 2298 5.421056 ACTCCATCCGTTCTGTAATGTAAGA 59.579 40.000 0.00 0.00 0.00 2.10
2042 2299 5.657474 TCCATCCGTTCTGTAATGTAAGAC 58.343 41.667 0.00 0.00 0.00 3.01
2043 2300 5.186215 TCCATCCGTTCTGTAATGTAAGACA 59.814 40.000 0.00 0.00 0.00 3.41
2044 2301 6.049149 CCATCCGTTCTGTAATGTAAGACAT 58.951 40.000 0.00 0.00 41.31 3.06
2046 2303 7.065803 CCATCCGTTCTGTAATGTAAGACATTT 59.934 37.037 9.92 0.00 45.80 2.32
2047 2304 7.972832 TCCGTTCTGTAATGTAAGACATTTT 57.027 32.000 9.92 0.00 45.80 1.82
2048 2305 8.385898 TCCGTTCTGTAATGTAAGACATTTTT 57.614 30.769 9.92 0.00 45.80 1.94
2077 2334 9.713684 TCAAAAGGAAATCTTACATTATGGGAT 57.286 29.630 0.00 0.00 34.78 3.85
2078 2335 9.754382 CAAAAGGAAATCTTACATTATGGGATG 57.246 33.333 0.00 0.00 34.78 3.51
2079 2336 9.713684 AAAAGGAAATCTTACATTATGGGATGA 57.286 29.630 0.00 0.00 34.78 2.92
2089 2346 9.868277 CTTACATTATGGGATGAAGAGAGTATC 57.132 37.037 0.00 0.00 0.00 2.24
2114 2371 9.904198 TCAGATAACTAATGATGATTTGGTGAA 57.096 29.630 0.00 0.00 0.00 3.18
2115 2372 9.941664 CAGATAACTAATGATGATTTGGTGAAC 57.058 33.333 0.00 0.00 0.00 3.18
2118 2375 9.911788 ATAACTAATGATGATTTGGTGAACTCT 57.088 29.630 0.00 0.00 0.00 3.24
2128 2385 6.491062 TGATTTGGTGAACTCTGAATTGTCAT 59.509 34.615 0.00 0.00 31.85 3.06
2133 2390 8.231692 TGGTGAACTCTGAATTGTCATTTAAA 57.768 30.769 0.00 0.00 31.85 1.52
2174 2432 7.784037 TGTCAGATTATTAAGCATGGCAAAAT 58.216 30.769 0.00 0.00 0.00 1.82
2178 2436 8.545420 CAGATTATTAAGCATGGCAAAATTGAC 58.455 33.333 0.00 0.00 36.50 3.18
2188 2446 3.189285 GGCAAAATTGACATTCGGGATG 58.811 45.455 0.00 0.00 41.71 3.51
2191 2449 5.221224 GGCAAAATTGACATTCGGGATGATA 60.221 40.000 2.58 0.00 39.15 2.15
2192 2450 6.272318 GCAAAATTGACATTCGGGATGATAA 58.728 36.000 2.58 0.00 39.15 1.75
2193 2451 6.756074 GCAAAATTGACATTCGGGATGATAAA 59.244 34.615 2.58 0.00 39.15 1.40
2194 2452 7.439056 GCAAAATTGACATTCGGGATGATAAAT 59.561 33.333 2.58 0.00 39.15 1.40
2199 2457 8.690203 TTGACATTCGGGATGATAAATTATGT 57.310 30.769 2.58 0.00 39.15 2.29
2200 2458 8.690203 TGACATTCGGGATGATAAATTATGTT 57.310 30.769 2.58 0.00 39.15 2.71
2202 2460 8.463930 ACATTCGGGATGATAAATTATGTTGT 57.536 30.769 2.58 0.00 39.15 3.32
2203 2461 8.567948 ACATTCGGGATGATAAATTATGTTGTC 58.432 33.333 2.58 0.00 39.15 3.18
2205 2463 6.285224 TCGGGATGATAAATTATGTTGTCGT 58.715 36.000 0.00 0.00 0.00 4.34
2206 2464 6.201997 TCGGGATGATAAATTATGTTGTCGTG 59.798 38.462 0.00 0.00 0.00 4.35
2207 2465 6.201997 CGGGATGATAAATTATGTTGTCGTGA 59.798 38.462 0.00 0.00 0.00 4.35
2217 2475 8.547967 AATTATGTTGTCGTGATTAGTTGTCT 57.452 30.769 0.00 0.00 0.00 3.41
2218 2476 7.956420 TTATGTTGTCGTGATTAGTTGTCTT 57.044 32.000 0.00 0.00 0.00 3.01
2219 2477 5.651172 TGTTGTCGTGATTAGTTGTCTTG 57.349 39.130 0.00 0.00 0.00 3.02
2220 2478 4.509970 TGTTGTCGTGATTAGTTGTCTTGG 59.490 41.667 0.00 0.00 0.00 3.61
2221 2479 4.594123 TGTCGTGATTAGTTGTCTTGGA 57.406 40.909 0.00 0.00 0.00 3.53
2222 2480 5.147330 TGTCGTGATTAGTTGTCTTGGAT 57.853 39.130 0.00 0.00 0.00 3.41
2223 2481 5.168569 TGTCGTGATTAGTTGTCTTGGATC 58.831 41.667 0.00 0.00 0.00 3.36
2224 2482 4.265556 GTCGTGATTAGTTGTCTTGGATCG 59.734 45.833 0.00 0.00 0.00 3.69
2225 2483 3.551890 CGTGATTAGTTGTCTTGGATCGG 59.448 47.826 0.00 0.00 0.00 4.18
2226 2484 3.309954 GTGATTAGTTGTCTTGGATCGGC 59.690 47.826 0.00 0.00 0.00 5.54
2227 2485 2.004583 TTAGTTGTCTTGGATCGGCG 57.995 50.000 0.00 0.00 0.00 6.46
2228 2486 0.459585 TAGTTGTCTTGGATCGGCGC 60.460 55.000 0.00 0.00 0.00 6.53
2229 2487 2.032634 GTTGTCTTGGATCGGCGCA 61.033 57.895 10.83 0.00 0.00 6.09
2230 2488 1.078497 TTGTCTTGGATCGGCGCAT 60.078 52.632 10.83 0.00 0.00 4.73
2231 2489 0.676466 TTGTCTTGGATCGGCGCATT 60.676 50.000 10.83 0.00 0.00 3.56
2232 2490 1.089481 TGTCTTGGATCGGCGCATTC 61.089 55.000 10.83 1.84 0.00 2.67
2238 2496 1.069978 TGGATCGGCGCATTCAGATTA 59.930 47.619 10.83 0.00 0.00 1.75
2255 2513 4.035324 CAGATTAGTCATGCTTGCTGAAGG 59.965 45.833 0.00 0.00 0.00 3.46
2259 2517 3.428532 AGTCATGCTTGCTGAAGGAAAT 58.571 40.909 0.00 0.00 32.62 2.17
2261 2519 3.924686 GTCATGCTTGCTGAAGGAAATTG 59.075 43.478 0.00 0.00 32.62 2.32
2271 2529 1.798813 GAAGGAAATTGTCGTGCTCGT 59.201 47.619 8.17 0.00 38.33 4.18
2272 2530 1.148310 AGGAAATTGTCGTGCTCGTG 58.852 50.000 8.17 0.00 38.33 4.35
2274 2532 1.732259 GGAAATTGTCGTGCTCGTGAT 59.268 47.619 8.17 0.00 38.33 3.06
2287 2545 5.502382 CGTGCTCGTGATAACATAATTTGCT 60.502 40.000 0.00 0.00 0.00 3.91
2301 2559 0.174845 TTTGCTATCCCGGACGTCAG 59.825 55.000 18.91 13.87 0.00 3.51
2308 2566 0.682852 TCCCGGACGTCAGATTTGTT 59.317 50.000 18.91 0.00 0.00 2.83
2356 2615 3.896648 TCCGCACAAAATTCACTTCTC 57.103 42.857 0.00 0.00 0.00 2.87
2357 2616 3.210227 TCCGCACAAAATTCACTTCTCA 58.790 40.909 0.00 0.00 0.00 3.27
2359 2618 3.916172 CCGCACAAAATTCACTTCTCATG 59.084 43.478 0.00 0.00 0.00 3.07
2364 2623 4.828939 ACAAAATTCACTTCTCATGCCTCA 59.171 37.500 0.00 0.00 0.00 3.86
2367 2626 4.774660 ATTCACTTCTCATGCCTCATCT 57.225 40.909 0.00 0.00 0.00 2.90
2375 2634 0.176449 CATGCCTCATCTGTCCACGA 59.824 55.000 0.00 0.00 0.00 4.35
2377 2636 0.900182 TGCCTCATCTGTCCACGACT 60.900 55.000 0.00 0.00 33.15 4.18
2379 2638 0.459237 CCTCATCTGTCCACGACTGC 60.459 60.000 0.00 0.00 32.74 4.40
2382 2641 3.006756 ATCTGTCCACGACTGCCGG 62.007 63.158 0.00 0.00 43.93 6.13
2399 2658 2.726691 GGCACAATGACGACGACCG 61.727 63.158 0.00 0.00 45.44 4.79
2400 2659 1.731613 GCACAATGACGACGACCGA 60.732 57.895 0.00 0.00 41.76 4.69
2404 2663 0.386858 CAATGACGACGACCGACAGT 60.387 55.000 0.00 5.50 44.96 3.55
2415 2676 1.069765 CCGACAGTGCTGTGGAAGT 59.930 57.895 14.45 0.00 45.05 3.01
2427 2688 1.602605 TGGAAGTGGCTCTCGTCGA 60.603 57.895 0.00 0.00 0.00 4.20
2432 2693 3.440415 TGGCTCTCGTCGACGCAT 61.440 61.111 32.19 0.00 39.60 4.73
2449 2710 1.224075 CATAAGCACGAGATGGCAGG 58.776 55.000 0.00 0.00 0.00 4.85
2474 2735 3.243128 TGCGCGACACATGTTCAG 58.757 55.556 12.10 0.00 0.00 3.02
2480 2741 1.417592 GACACATGTTCAGCGAGCG 59.582 57.895 0.00 0.00 0.00 5.03
2481 2742 2.097160 CACATGTTCAGCGAGCGC 59.903 61.111 6.78 6.78 42.33 5.92
2482 2743 2.357396 ACATGTTCAGCGAGCGCA 60.357 55.556 17.68 0.00 44.88 6.09
2483 2744 2.385875 ACATGTTCAGCGAGCGCAG 61.386 57.895 17.68 9.37 44.88 5.18
2485 2746 1.153489 ATGTTCAGCGAGCGCAGAT 60.153 52.632 17.68 0.00 44.88 2.90
2487 2748 2.510012 TTCAGCGAGCGCAGATGG 60.510 61.111 17.68 2.05 44.88 3.51
2494 2755 2.358615 AGCGCAGATGGCAACGAA 60.359 55.556 11.47 0.00 45.17 3.85
2500 2761 1.596752 AGATGGCAACGAACGCACA 60.597 52.632 0.00 0.00 42.51 4.57
2501 2762 1.154413 GATGGCAACGAACGCACAG 60.154 57.895 0.00 0.00 42.51 3.66
2513 2774 4.008933 GCACAGTGGAGGAGGCGT 62.009 66.667 1.84 0.00 0.00 5.68
2551 2812 2.203294 ACGCCCACACCAGTTTCC 60.203 61.111 0.00 0.00 0.00 3.13
2552 2813 3.353836 CGCCCACACCAGTTTCCG 61.354 66.667 0.00 0.00 0.00 4.30
2560 2821 0.535102 CACCAGTTTCCGGCTTCACT 60.535 55.000 0.00 0.00 0.00 3.41
2569 2830 2.528743 CGGCTTCACTATGGCGCAG 61.529 63.158 10.83 0.00 44.46 5.18
2612 2873 0.901827 TCATGGCGTAGGAGAAGCAA 59.098 50.000 0.00 0.00 33.63 3.91
2617 2878 0.179108 GCGTAGGAGAAGCAACCGAT 60.179 55.000 0.00 0.00 32.03 4.18
2620 2881 2.098607 CGTAGGAGAAGCAACCGATGTA 59.901 50.000 0.00 0.00 0.00 2.29
2621 2882 3.243434 CGTAGGAGAAGCAACCGATGTAT 60.243 47.826 0.00 0.00 0.00 2.29
2623 2884 2.103263 AGGAGAAGCAACCGATGTATCC 59.897 50.000 0.00 0.00 0.00 2.59
2624 2885 2.484889 GAGAAGCAACCGATGTATCCC 58.515 52.381 0.00 0.00 0.00 3.85
2625 2886 1.837439 AGAAGCAACCGATGTATCCCA 59.163 47.619 0.00 0.00 0.00 4.37
2632 2893 1.441729 CGATGTATCCCACGCCACT 59.558 57.895 0.00 0.00 0.00 4.00
2637 2898 1.146041 TATCCCACGCCACTGATGC 59.854 57.895 0.00 0.00 0.00 3.91
2646 2907 2.434884 CACTGATGCCCGCGTTCT 60.435 61.111 4.92 0.00 0.00 3.01
2666 2927 1.178276 AGACGTTGCAGGAGGAGTAG 58.822 55.000 0.00 0.00 0.00 2.57
2680 2941 1.475682 GGAGTAGTGGTACAACCTCCG 59.524 57.143 9.25 0.00 44.16 4.63
2683 2944 1.203287 GTAGTGGTACAACCTCCGACC 59.797 57.143 0.00 0.00 44.16 4.79
2687 2948 1.611474 GGTACAACCTCCGACCCCTC 61.611 65.000 0.00 0.00 34.73 4.30
2717 2978 2.359850 GCGGCCATGGTCACAGAA 60.360 61.111 18.31 0.00 0.00 3.02
2718 2979 1.971167 GCGGCCATGGTCACAGAAA 60.971 57.895 18.31 0.00 0.00 2.52
2724 2985 2.562298 GCCATGGTCACAGAAAAATCCA 59.438 45.455 14.67 0.00 0.00 3.41
2725 2986 3.006752 GCCATGGTCACAGAAAAATCCAA 59.993 43.478 14.67 0.00 0.00 3.53
2727 2988 4.281688 CCATGGTCACAGAAAAATCCAAGT 59.718 41.667 2.57 0.00 0.00 3.16
2733 2994 6.264518 GGTCACAGAAAAATCCAAGTTTCCTA 59.735 38.462 0.00 0.00 34.85 2.94
2734 2995 7.363431 GTCACAGAAAAATCCAAGTTTCCTAG 58.637 38.462 0.00 0.00 34.85 3.02
2743 3004 5.441718 TCCAAGTTTCCTAGATGAGCAAT 57.558 39.130 0.00 0.00 0.00 3.56
2761 3022 1.651987 ATGAGCGTTGTACCAATCCG 58.348 50.000 0.00 0.00 0.00 4.18
2787 3048 2.313172 CGCCTATGACATCCGCTGC 61.313 63.158 0.00 0.00 0.00 5.25
2802 3063 4.765449 TGCGAGCGATGGCAGCTT 62.765 61.111 6.17 0.00 46.13 3.74
2803 3064 4.233635 GCGAGCGATGGCAGCTTG 62.234 66.667 1.75 10.77 46.13 4.01
2804 3065 2.510012 CGAGCGATGGCAGCTTGA 60.510 61.111 9.76 0.00 46.36 3.02
2805 3066 2.102438 CGAGCGATGGCAGCTTGAA 61.102 57.895 9.76 0.00 46.36 2.69
2806 3067 1.638388 CGAGCGATGGCAGCTTGAAA 61.638 55.000 9.76 0.00 46.36 2.69
2807 3068 0.098376 GAGCGATGGCAGCTTGAAAG 59.902 55.000 1.50 0.00 46.13 2.62
2808 3069 0.607489 AGCGATGGCAGCTTGAAAGT 60.607 50.000 1.50 0.00 43.24 2.66
2809 3070 0.455633 GCGATGGCAGCTTGAAAGTG 60.456 55.000 0.00 0.00 39.62 3.16
2810 3071 0.455633 CGATGGCAGCTTGAAAGTGC 60.456 55.000 0.00 8.29 34.51 4.40
2811 3072 0.599558 GATGGCAGCTTGAAAGTGCA 59.400 50.000 14.93 0.00 35.89 4.57
2812 3073 1.000060 GATGGCAGCTTGAAAGTGCAA 60.000 47.619 14.93 7.93 35.89 4.08
2813 3074 0.102844 TGGCAGCTTGAAAGTGCAAC 59.897 50.000 14.93 0.00 35.89 4.17
2825 3086 3.978876 GTGCAACTAATCCCTGGGT 57.021 52.632 13.56 0.00 0.00 4.51
2826 3087 1.463674 GTGCAACTAATCCCTGGGTG 58.536 55.000 13.56 3.33 0.00 4.61
2827 3088 0.331278 TGCAACTAATCCCTGGGTGG 59.669 55.000 13.56 0.00 0.00 4.61
2828 3089 0.331616 GCAACTAATCCCTGGGTGGT 59.668 55.000 13.56 0.00 0.00 4.16
2829 3090 1.272480 GCAACTAATCCCTGGGTGGTT 60.272 52.381 13.56 5.94 0.00 3.67
2830 3091 2.821625 GCAACTAATCCCTGGGTGGTTT 60.822 50.000 13.56 5.53 0.00 3.27
2831 3092 3.506398 CAACTAATCCCTGGGTGGTTTT 58.494 45.455 13.56 3.14 0.00 2.43
2832 3093 3.169512 ACTAATCCCTGGGTGGTTTTG 57.830 47.619 13.56 6.52 0.00 2.44
2833 3094 2.225267 ACTAATCCCTGGGTGGTTTTGG 60.225 50.000 13.56 5.05 0.00 3.28
2834 3095 0.863956 AATCCCTGGGTGGTTTTGGA 59.136 50.000 13.56 0.00 0.00 3.53
2835 3096 0.863956 ATCCCTGGGTGGTTTTGGAA 59.136 50.000 13.56 0.00 0.00 3.53
2836 3097 0.637195 TCCCTGGGTGGTTTTGGAAA 59.363 50.000 13.56 0.00 0.00 3.13
2837 3098 1.221781 TCCCTGGGTGGTTTTGGAAAT 59.778 47.619 13.56 0.00 0.00 2.17
2838 3099 2.054021 CCCTGGGTGGTTTTGGAAATT 58.946 47.619 3.97 0.00 0.00 1.82
2839 3100 2.038426 CCCTGGGTGGTTTTGGAAATTC 59.962 50.000 3.97 0.00 0.00 2.17
2840 3101 2.703007 CCTGGGTGGTTTTGGAAATTCA 59.297 45.455 0.00 0.00 0.00 2.57
2841 3102 3.327464 CCTGGGTGGTTTTGGAAATTCAT 59.673 43.478 0.00 0.00 0.00 2.57
2842 3103 4.530161 CCTGGGTGGTTTTGGAAATTCATA 59.470 41.667 0.00 0.00 0.00 2.15
2843 3104 5.337491 CCTGGGTGGTTTTGGAAATTCATAG 60.337 44.000 0.00 0.00 0.00 2.23
2844 3105 4.020662 TGGGTGGTTTTGGAAATTCATAGC 60.021 41.667 0.00 0.00 0.00 2.97
2845 3106 4.020662 GGGTGGTTTTGGAAATTCATAGCA 60.021 41.667 0.00 0.00 0.00 3.49
2846 3107 5.512232 GGGTGGTTTTGGAAATTCATAGCAA 60.512 40.000 0.00 0.00 0.00 3.91
2847 3108 5.408299 GGTGGTTTTGGAAATTCATAGCAAC 59.592 40.000 0.00 0.00 0.00 4.17
2848 3109 5.988561 GTGGTTTTGGAAATTCATAGCAACA 59.011 36.000 0.00 0.00 0.00 3.33
2849 3110 6.650390 GTGGTTTTGGAAATTCATAGCAACAT 59.350 34.615 0.00 0.00 0.00 2.71
2850 3111 7.816995 GTGGTTTTGGAAATTCATAGCAACATA 59.183 33.333 0.00 0.00 0.00 2.29
2851 3112 8.538701 TGGTTTTGGAAATTCATAGCAACATAT 58.461 29.630 0.00 0.00 0.00 1.78
2854 3115 9.748708 TTTTGGAAATTCATAGCAACATATAGC 57.251 29.630 0.00 0.00 0.00 2.97
2855 3116 8.696043 TTGGAAATTCATAGCAACATATAGCT 57.304 30.769 0.00 0.00 44.55 3.32
2856 3117 8.327941 TGGAAATTCATAGCAACATATAGCTC 57.672 34.615 0.00 0.00 42.05 4.09
2857 3118 7.938490 TGGAAATTCATAGCAACATATAGCTCA 59.062 33.333 0.00 0.00 42.05 4.26
2858 3119 8.954350 GGAAATTCATAGCAACATATAGCTCAT 58.046 33.333 0.00 0.00 42.05 2.90
2861 3122 9.511272 AATTCATAGCAACATATAGCTCATTGA 57.489 29.630 0.00 0.00 42.05 2.57
2862 3123 8.907222 TTCATAGCAACATATAGCTCATTGAA 57.093 30.769 0.00 0.00 42.05 2.69
2863 3124 8.315391 TCATAGCAACATATAGCTCATTGAAC 57.685 34.615 0.00 0.00 42.05 3.18
2864 3125 8.152898 TCATAGCAACATATAGCTCATTGAACT 58.847 33.333 0.00 0.00 42.05 3.01
2865 3126 9.428097 CATAGCAACATATAGCTCATTGAACTA 57.572 33.333 0.00 0.00 42.05 2.24
2867 3128 8.915057 AGCAACATATAGCTCATTGAACTAAT 57.085 30.769 1.14 0.00 36.00 1.73
2896 3157 9.784531 TCTTTCAAGATGACTATTTCAGAAAGT 57.215 29.630 0.00 0.00 37.77 2.66
2899 3160 9.559732 TTCAAGATGACTATTTCAGAAAGTTCA 57.440 29.630 1.28 4.37 37.77 3.18
2900 3161 9.559732 TCAAGATGACTATTTCAGAAAGTTCAA 57.440 29.630 1.28 0.00 37.77 2.69
2903 3164 9.730705 AGATGACTATTTCAGAAAGTTCAATGA 57.269 29.630 1.28 0.00 37.77 2.57
2907 3168 9.565213 GACTATTTCAGAAAGTTCAATGATTGG 57.435 33.333 5.20 0.00 0.00 3.16
2908 3169 8.031277 ACTATTTCAGAAAGTTCAATGATTGGC 58.969 33.333 5.20 0.00 0.00 4.52
2909 3170 5.787953 TTCAGAAAGTTCAATGATTGGCA 57.212 34.783 5.20 0.00 0.00 4.92
2910 3171 5.988310 TCAGAAAGTTCAATGATTGGCAT 57.012 34.783 5.20 0.00 39.43 4.40
2911 3172 5.716094 TCAGAAAGTTCAATGATTGGCATG 58.284 37.500 5.20 0.00 37.28 4.06
2912 3173 4.868171 CAGAAAGTTCAATGATTGGCATGG 59.132 41.667 5.20 0.00 37.28 3.66
2913 3174 2.973694 AGTTCAATGATTGGCATGGC 57.026 45.000 13.29 13.29 37.28 4.40
2914 3175 2.181125 AGTTCAATGATTGGCATGGCA 58.819 42.857 19.43 19.43 37.28 4.92
2915 3176 2.769663 AGTTCAATGATTGGCATGGCAT 59.230 40.909 23.96 12.99 37.28 4.40
2916 3177 2.869801 GTTCAATGATTGGCATGGCATG 59.130 45.455 23.96 22.99 37.28 4.06
2917 3178 1.414550 TCAATGATTGGCATGGCATGG 59.585 47.619 27.48 5.66 37.28 3.66
2918 3179 1.414550 CAATGATTGGCATGGCATGGA 59.585 47.619 27.48 8.86 37.28 3.41
2919 3180 1.045407 ATGATTGGCATGGCATGGAC 58.955 50.000 27.48 12.58 35.42 4.02
2920 3181 0.032912 TGATTGGCATGGCATGGACT 60.033 50.000 27.48 5.69 0.00 3.85
2921 3182 1.214923 TGATTGGCATGGCATGGACTA 59.785 47.619 27.48 7.20 0.00 2.59
2922 3183 1.884579 GATTGGCATGGCATGGACTAG 59.115 52.381 27.48 2.65 0.00 2.57
2923 3184 0.918258 TTGGCATGGCATGGACTAGA 59.082 50.000 27.48 1.89 0.00 2.43
2924 3185 0.471191 TGGCATGGCATGGACTAGAG 59.529 55.000 27.48 1.12 0.00 2.43
2925 3186 0.761187 GGCATGGCATGGACTAGAGA 59.239 55.000 27.48 0.00 0.00 3.10
2926 3187 1.350351 GGCATGGCATGGACTAGAGAT 59.650 52.381 27.48 0.00 0.00 2.75
2927 3188 2.424557 GCATGGCATGGACTAGAGATG 58.575 52.381 27.48 0.60 0.00 2.90
2928 3189 2.224475 GCATGGCATGGACTAGAGATGT 60.224 50.000 27.48 0.00 0.00 3.06
2929 3190 3.400255 CATGGCATGGACTAGAGATGTG 58.600 50.000 19.80 0.00 0.00 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.441001 CAGTCATAGGCCCAAGGAAGAT 59.559 50.000 0.00 0.00 0.00 2.40
40 41 2.124570 GCCGCCATCACCAGTCAT 60.125 61.111 0.00 0.00 0.00 3.06
128 138 0.042731 AGGATCAAGGTTCTCCCCGA 59.957 55.000 0.00 0.00 0.00 5.14
181 193 2.503382 GCGCTAGAAGGAGGAGGGG 61.503 68.421 0.00 0.00 0.00 4.79
182 194 1.045911 AAGCGCTAGAAGGAGGAGGG 61.046 60.000 12.05 0.00 0.00 4.30
183 195 0.387565 GAAGCGCTAGAAGGAGGAGG 59.612 60.000 12.05 0.00 0.00 4.30
185 197 0.680280 ACGAAGCGCTAGAAGGAGGA 60.680 55.000 12.05 0.00 0.00 3.71
192 204 0.963856 TCCAAGGACGAAGCGCTAGA 60.964 55.000 12.05 0.00 0.00 2.43
193 205 0.526524 CTCCAAGGACGAAGCGCTAG 60.527 60.000 12.05 11.25 0.00 3.42
219 231 0.179000 CACTGGTCCATCTGGCCTAC 59.821 60.000 3.32 0.00 34.06 3.18
221 233 2.304056 CCACTGGTCCATCTGGCCT 61.304 63.158 3.32 0.00 34.06 5.19
225 237 2.768527 ACTACATCCACTGGTCCATCTG 59.231 50.000 0.00 0.00 0.00 2.90
229 241 1.628340 CCAACTACATCCACTGGTCCA 59.372 52.381 0.00 0.00 0.00 4.02
243 268 1.069513 CCTCGACACCAACACCAACTA 59.930 52.381 0.00 0.00 0.00 2.24
281 310 1.609210 AAAACCATTGCTCCCCCGG 60.609 57.895 0.00 0.00 0.00 5.73
282 311 1.591183 CAAAACCATTGCTCCCCCG 59.409 57.895 0.00 0.00 0.00 5.73
288 319 2.397597 ACCTCAACCAAAACCATTGCT 58.602 42.857 0.00 0.00 0.00 3.91
291 322 4.798882 TGACTACCTCAACCAAAACCATT 58.201 39.130 0.00 0.00 0.00 3.16
347 387 1.134175 CTTCCGCAACAACAAACCAGT 59.866 47.619 0.00 0.00 0.00 4.00
415 456 2.519377 AGATCAACGAACGAACCACA 57.481 45.000 0.14 0.00 0.00 4.17
453 494 5.757320 CGGAGTACTACGAAGGAGAATTAGA 59.243 44.000 23.49 0.00 39.85 2.10
494 535 0.185901 ACCACTTGCCACCAGACAAT 59.814 50.000 0.00 0.00 0.00 2.71
504 545 1.181098 ATGCCACTCAACCACTTGCC 61.181 55.000 0.00 0.00 0.00 4.52
522 566 5.178096 TGTGGAGTTGTATGACAATCCAT 57.822 39.130 18.19 0.00 42.23 3.41
623 667 2.549329 TGAGACAACACACATGCATCAC 59.451 45.455 0.00 0.00 0.00 3.06
627 671 2.330440 ACTGAGACAACACACATGCA 57.670 45.000 0.00 0.00 0.00 3.96
628 672 4.319766 CCTTTACTGAGACAACACACATGC 60.320 45.833 0.00 0.00 0.00 4.06
630 674 3.815401 GCCTTTACTGAGACAACACACAT 59.185 43.478 0.00 0.00 0.00 3.21
633 677 2.438021 AGGCCTTTACTGAGACAACACA 59.562 45.455 0.00 0.00 0.00 3.72
634 678 3.127425 AGGCCTTTACTGAGACAACAC 57.873 47.619 0.00 0.00 0.00 3.32
637 681 6.831868 ACTTTAAAAGGCCTTTACTGAGACAA 59.168 34.615 30.59 12.92 31.63 3.18
643 687 5.784578 ACCACTTTAAAAGGCCTTTACTG 57.215 39.130 30.59 21.15 31.63 2.74
644 688 6.155565 ACAAACCACTTTAAAAGGCCTTTACT 59.844 34.615 30.59 18.62 31.63 2.24
646 690 6.342111 CACAAACCACTTTAAAAGGCCTTTA 58.658 36.000 30.59 14.02 31.63 1.85
647 691 5.182487 CACAAACCACTTTAAAAGGCCTTT 58.818 37.500 25.47 25.47 0.00 3.11
652 696 3.120041 CCGCACAAACCACTTTAAAAGG 58.880 45.455 5.11 5.11 0.00 3.11
658 703 0.106619 TACCCCGCACAAACCACTTT 60.107 50.000 0.00 0.00 0.00 2.66
659 704 0.111639 ATACCCCGCACAAACCACTT 59.888 50.000 0.00 0.00 0.00 3.16
666 711 4.637276 CACATATAAGATACCCCGCACAA 58.363 43.478 0.00 0.00 0.00 3.33
672 717 2.236395 AGCGGCACATATAAGATACCCC 59.764 50.000 1.45 0.00 0.00 4.95
674 719 3.179830 CGAGCGGCACATATAAGATACC 58.820 50.000 1.45 0.00 0.00 2.73
691 736 2.285827 AGCTATCATAATCGCCGAGC 57.714 50.000 0.00 0.00 0.00 5.03
692 737 3.301906 CGAAAGCTATCATAATCGCCGAG 59.698 47.826 0.00 0.00 0.00 4.63
694 739 2.987149 ACGAAAGCTATCATAATCGCCG 59.013 45.455 0.00 0.00 33.88 6.46
695 740 3.987868 TGACGAAAGCTATCATAATCGCC 59.012 43.478 0.00 0.00 33.88 5.54
697 742 7.573916 AATCTGACGAAAGCTATCATAATCG 57.426 36.000 0.00 0.00 36.45 3.34
707 752 9.573133 CCAATTAATTAAAATCTGACGAAAGCT 57.427 29.630 1.21 0.00 0.00 3.74
708 753 8.807581 CCCAATTAATTAAAATCTGACGAAAGC 58.192 33.333 1.21 0.00 0.00 3.51
709 754 8.807581 GCCCAATTAATTAAAATCTGACGAAAG 58.192 33.333 1.21 0.00 0.00 2.62
710 755 8.307483 TGCCCAATTAATTAAAATCTGACGAAA 58.693 29.630 1.21 0.00 0.00 3.46
711 756 7.831753 TGCCCAATTAATTAAAATCTGACGAA 58.168 30.769 1.21 0.00 0.00 3.85
713 758 8.647143 ATTGCCCAATTAATTAAAATCTGACG 57.353 30.769 1.21 0.00 0.00 4.35
714 759 9.822185 AGATTGCCCAATTAATTAAAATCTGAC 57.178 29.630 15.12 0.74 33.17 3.51
716 761 9.048446 CCAGATTGCCCAATTAATTAAAATCTG 57.952 33.333 24.95 24.95 44.65 2.90
718 763 7.716560 AGCCAGATTGCCCAATTAATTAAAATC 59.283 33.333 1.21 6.06 0.00 2.17
719 764 7.576403 AGCCAGATTGCCCAATTAATTAAAAT 58.424 30.769 1.21 0.00 0.00 1.82
720 765 6.956497 AGCCAGATTGCCCAATTAATTAAAA 58.044 32.000 1.21 0.00 0.00 1.52
748 967 2.398588 TGATAGGATGGAAAGCCGAGT 58.601 47.619 0.00 0.00 36.79 4.18
751 970 3.187227 CGAAATGATAGGATGGAAAGCCG 59.813 47.826 0.00 0.00 36.79 5.52
754 973 6.753180 TCTCTCGAAATGATAGGATGGAAAG 58.247 40.000 0.00 0.00 0.00 2.62
765 984 6.537566 CGTCACATTTTTCTCTCGAAATGAT 58.462 36.000 11.23 0.00 42.85 2.45
766 985 5.614668 GCGTCACATTTTTCTCTCGAAATGA 60.615 40.000 11.23 0.00 42.85 2.57
775 994 3.042887 GGTGTTGCGTCACATTTTTCTC 58.957 45.455 11.97 0.00 39.76 2.87
777 996 3.078594 AGGTGTTGCGTCACATTTTTC 57.921 42.857 11.97 0.00 39.76 2.29
812 1032 7.903452 AAACCGATTTAGAAAACGAAAAGTC 57.097 32.000 6.27 0.00 36.45 3.01
958 1178 2.489971 AGGAAGAAAATGACGACGCAA 58.510 42.857 0.00 0.00 0.00 4.85
986 1206 0.762461 CCCCATCTCTCTCCCCTGTC 60.762 65.000 0.00 0.00 0.00 3.51
1223 1470 1.115467 ATGGTTCTGCGAGTAGAGGG 58.885 55.000 0.00 0.00 0.00 4.30
1238 1485 2.951229 AACTCCGGAGAAACAATGGT 57.049 45.000 37.69 10.13 0.00 3.55
1297 1544 6.152379 CCGATCGATCTTGATCAGTTGAATA 58.848 40.000 22.43 0.00 44.02 1.75
1298 1545 4.987285 CCGATCGATCTTGATCAGTTGAAT 59.013 41.667 22.43 0.00 44.02 2.57
1299 1546 4.363138 CCGATCGATCTTGATCAGTTGAA 58.637 43.478 22.43 0.00 44.02 2.69
1300 1547 3.796844 GCCGATCGATCTTGATCAGTTGA 60.797 47.826 22.43 0.00 44.02 3.18
1870 2127 1.000843 CGTCTCATCACCACCACTCAA 59.999 52.381 0.00 0.00 0.00 3.02
1945 2202 9.601971 CCAATTAAATTCTTCAGTTTGCATTTG 57.398 29.630 0.00 0.00 0.00 2.32
1963 2220 4.278170 CAGTTCACCTGACTGCCAATTAAA 59.722 41.667 0.00 0.00 44.49 1.52
1969 2226 2.526958 TCAGTTCACCTGACTGCCA 58.473 52.632 0.00 0.00 45.34 4.92
1981 2238 9.073475 AGGACACTAGTCATCTATAATCAGTTC 57.927 37.037 0.00 0.00 46.80 3.01
1997 2254 9.884814 ATGGAGTAATTTATAGAGGACACTAGT 57.115 33.333 0.00 0.00 0.00 2.57
2049 2306 8.748412 CCCATAATGTAAGATTTCCTTTTGACA 58.252 33.333 0.00 0.00 36.34 3.58
2050 2307 8.966868 TCCCATAATGTAAGATTTCCTTTTGAC 58.033 33.333 0.00 0.00 36.34 3.18
2051 2308 9.713684 ATCCCATAATGTAAGATTTCCTTTTGA 57.286 29.630 0.00 0.00 36.34 2.69
2052 2309 9.754382 CATCCCATAATGTAAGATTTCCTTTTG 57.246 33.333 0.00 0.00 36.34 2.44
2053 2310 9.713684 TCATCCCATAATGTAAGATTTCCTTTT 57.286 29.630 0.00 0.00 36.34 2.27
2054 2311 9.713684 TTCATCCCATAATGTAAGATTTCCTTT 57.286 29.630 0.00 0.00 36.34 3.11
2055 2312 9.359653 CTTCATCCCATAATGTAAGATTTCCTT 57.640 33.333 0.00 0.00 38.87 3.36
2056 2313 8.727149 TCTTCATCCCATAATGTAAGATTTCCT 58.273 33.333 0.00 0.00 0.00 3.36
2057 2314 8.924511 TCTTCATCCCATAATGTAAGATTTCC 57.075 34.615 0.00 0.00 0.00 3.13
2058 2315 9.784531 TCTCTTCATCCCATAATGTAAGATTTC 57.215 33.333 0.00 0.00 30.07 2.17
2059 2316 9.790344 CTCTCTTCATCCCATAATGTAAGATTT 57.210 33.333 0.00 0.00 30.07 2.17
2060 2317 8.943085 ACTCTCTTCATCCCATAATGTAAGATT 58.057 33.333 0.00 0.00 30.07 2.40
2061 2318 8.503428 ACTCTCTTCATCCCATAATGTAAGAT 57.497 34.615 0.00 0.00 30.07 2.40
2062 2319 7.921041 ACTCTCTTCATCCCATAATGTAAGA 57.079 36.000 0.00 0.00 0.00 2.10
2063 2320 9.868277 GATACTCTCTTCATCCCATAATGTAAG 57.132 37.037 0.00 0.00 0.00 2.34
2064 2321 9.379770 TGATACTCTCTTCATCCCATAATGTAA 57.620 33.333 0.00 0.00 0.00 2.41
2065 2322 8.956446 TGATACTCTCTTCATCCCATAATGTA 57.044 34.615 0.00 0.00 0.00 2.29
2066 2323 7.732140 TCTGATACTCTCTTCATCCCATAATGT 59.268 37.037 0.00 0.00 0.00 2.71
2089 2346 9.941664 GTTCACCAAATCATCATTAGTTATCTG 57.058 33.333 0.00 0.00 0.00 2.90
2104 2361 6.317789 TGACAATTCAGAGTTCACCAAATC 57.682 37.500 0.00 0.00 0.00 2.17
2147 2404 6.564709 TGCCATGCTTAATAATCTGACATC 57.435 37.500 0.00 0.00 0.00 3.06
2148 2405 6.964807 TTGCCATGCTTAATAATCTGACAT 57.035 33.333 0.00 0.00 0.00 3.06
2149 2406 6.772360 TTTGCCATGCTTAATAATCTGACA 57.228 33.333 0.00 0.00 0.00 3.58
2153 2411 8.259411 TGTCAATTTTGCCATGCTTAATAATCT 58.741 29.630 0.00 0.00 0.00 2.40
2174 2432 8.690203 ACATAATTTATCATCCCGAATGTCAA 57.310 30.769 0.00 0.00 36.68 3.18
2178 2436 7.746034 CGACAACATAATTTATCATCCCGAATG 59.254 37.037 0.00 0.00 36.65 2.67
2179 2437 7.444183 ACGACAACATAATTTATCATCCCGAAT 59.556 33.333 0.00 0.00 0.00 3.34
2181 2439 6.201997 CACGACAACATAATTTATCATCCCGA 59.798 38.462 0.00 0.00 0.00 5.14
2183 2441 7.490962 TCACGACAACATAATTTATCATCCC 57.509 36.000 0.00 0.00 0.00 3.85
2191 2449 8.999431 AGACAACTAATCACGACAACATAATTT 58.001 29.630 0.00 0.00 0.00 1.82
2192 2450 8.547967 AGACAACTAATCACGACAACATAATT 57.452 30.769 0.00 0.00 0.00 1.40
2193 2451 8.443160 CAAGACAACTAATCACGACAACATAAT 58.557 33.333 0.00 0.00 0.00 1.28
2194 2452 7.095397 CCAAGACAACTAATCACGACAACATAA 60.095 37.037 0.00 0.00 0.00 1.90
2196 2454 5.179368 CCAAGACAACTAATCACGACAACAT 59.821 40.000 0.00 0.00 0.00 2.71
2197 2455 4.509970 CCAAGACAACTAATCACGACAACA 59.490 41.667 0.00 0.00 0.00 3.33
2198 2456 4.748102 TCCAAGACAACTAATCACGACAAC 59.252 41.667 0.00 0.00 0.00 3.32
2199 2457 4.951254 TCCAAGACAACTAATCACGACAA 58.049 39.130 0.00 0.00 0.00 3.18
2200 2458 4.594123 TCCAAGACAACTAATCACGACA 57.406 40.909 0.00 0.00 0.00 4.35
2202 2460 4.421058 CGATCCAAGACAACTAATCACGA 58.579 43.478 0.00 0.00 0.00 4.35
2203 2461 3.551890 CCGATCCAAGACAACTAATCACG 59.448 47.826 0.00 0.00 0.00 4.35
2205 2463 3.531538 GCCGATCCAAGACAACTAATCA 58.468 45.455 0.00 0.00 0.00 2.57
2206 2464 2.540101 CGCCGATCCAAGACAACTAATC 59.460 50.000 0.00 0.00 0.00 1.75
2207 2465 2.550978 CGCCGATCCAAGACAACTAAT 58.449 47.619 0.00 0.00 0.00 1.73
2210 2468 1.741770 GCGCCGATCCAAGACAACT 60.742 57.895 0.00 0.00 0.00 3.16
2211 2469 1.369091 ATGCGCCGATCCAAGACAAC 61.369 55.000 4.18 0.00 0.00 3.32
2214 2472 1.089481 TGAATGCGCCGATCCAAGAC 61.089 55.000 4.18 0.00 0.00 3.01
2215 2473 0.811219 CTGAATGCGCCGATCCAAGA 60.811 55.000 4.18 0.00 0.00 3.02
2216 2474 0.811219 TCTGAATGCGCCGATCCAAG 60.811 55.000 4.18 0.00 0.00 3.61
2217 2475 0.179048 ATCTGAATGCGCCGATCCAA 60.179 50.000 4.18 0.00 0.00 3.53
2218 2476 0.179048 AATCTGAATGCGCCGATCCA 60.179 50.000 4.18 0.00 0.00 3.41
2219 2477 1.728971 CTAATCTGAATGCGCCGATCC 59.271 52.381 4.18 0.00 0.00 3.36
2220 2478 2.408050 ACTAATCTGAATGCGCCGATC 58.592 47.619 4.18 0.34 0.00 3.69
2221 2479 2.224042 TGACTAATCTGAATGCGCCGAT 60.224 45.455 4.18 0.00 0.00 4.18
2222 2480 1.136110 TGACTAATCTGAATGCGCCGA 59.864 47.619 4.18 0.00 0.00 5.54
2223 2481 1.570813 TGACTAATCTGAATGCGCCG 58.429 50.000 4.18 0.00 0.00 6.46
2224 2482 2.350197 GCATGACTAATCTGAATGCGCC 60.350 50.000 4.18 0.00 34.84 6.53
2225 2483 2.547211 AGCATGACTAATCTGAATGCGC 59.453 45.455 0.00 0.00 46.40 6.09
2226 2484 4.524749 CAAGCATGACTAATCTGAATGCG 58.475 43.478 0.00 0.00 46.40 4.73
2227 2485 4.036498 AGCAAGCATGACTAATCTGAATGC 59.964 41.667 0.00 2.34 43.10 3.56
2228 2486 5.296035 TCAGCAAGCATGACTAATCTGAATG 59.704 40.000 0.00 0.00 30.18 2.67
2229 2487 5.434408 TCAGCAAGCATGACTAATCTGAAT 58.566 37.500 0.00 0.00 30.18 2.57
2230 2488 4.835678 TCAGCAAGCATGACTAATCTGAA 58.164 39.130 0.00 0.00 30.18 3.02
2231 2489 4.476628 TCAGCAAGCATGACTAATCTGA 57.523 40.909 0.00 4.73 0.00 3.27
2232 2490 4.035324 CCTTCAGCAAGCATGACTAATCTG 59.965 45.833 0.00 2.59 0.00 2.90
2238 2496 2.574006 TTCCTTCAGCAAGCATGACT 57.426 45.000 0.00 0.00 0.00 3.41
2255 2513 4.143200 TGTTATCACGAGCACGACAATTTC 60.143 41.667 11.40 0.00 42.66 2.17
2259 2517 2.425578 TGTTATCACGAGCACGACAA 57.574 45.000 11.40 0.00 42.66 3.18
2261 2519 5.637104 AATTATGTTATCACGAGCACGAC 57.363 39.130 11.40 0.00 42.66 4.34
2272 2530 6.183360 CGTCCGGGATAGCAAATTATGTTATC 60.183 42.308 0.00 12.05 46.07 1.75
2274 2532 4.992319 CGTCCGGGATAGCAAATTATGTTA 59.008 41.667 0.00 0.00 0.00 2.41
2287 2545 2.104967 ACAAATCTGACGTCCGGGATA 58.895 47.619 14.12 0.00 0.00 2.59
2336 2595 3.210227 TGAGAAGTGAATTTTGTGCGGA 58.790 40.909 0.00 0.00 0.00 5.54
2337 2596 3.624326 TGAGAAGTGAATTTTGTGCGG 57.376 42.857 0.00 0.00 0.00 5.69
2338 2597 3.362831 GCATGAGAAGTGAATTTTGTGCG 59.637 43.478 0.00 0.00 0.00 5.34
2344 2603 5.357314 CAGATGAGGCATGAGAAGTGAATTT 59.643 40.000 0.00 0.00 0.00 1.82
2345 2604 4.882427 CAGATGAGGCATGAGAAGTGAATT 59.118 41.667 0.00 0.00 0.00 2.17
2350 2609 2.170187 GGACAGATGAGGCATGAGAAGT 59.830 50.000 0.00 0.00 0.00 3.01
2356 2615 0.176449 TCGTGGACAGATGAGGCATG 59.824 55.000 0.00 0.00 0.00 4.06
2357 2616 0.176680 GTCGTGGACAGATGAGGCAT 59.823 55.000 0.00 0.00 32.09 4.40
2359 2618 0.459237 CAGTCGTGGACAGATGAGGC 60.459 60.000 0.00 0.00 34.60 4.70
2364 2623 2.573869 CGGCAGTCGTGGACAGAT 59.426 61.111 0.00 0.00 34.60 2.90
2375 2634 3.049674 CGTCATTGTGCCGGCAGT 61.050 61.111 33.73 16.85 0.00 4.40
2377 2636 3.047280 GTCGTCATTGTGCCGGCA 61.047 61.111 29.03 29.03 0.00 5.69
2379 2638 2.431771 TCGTCGTCATTGTGCCGG 60.432 61.111 0.00 0.00 0.00 6.13
2382 2641 1.731613 TCGGTCGTCGTCATTGTGC 60.732 57.895 0.00 0.00 40.32 4.57
2399 2658 1.510480 GCCACTTCCACAGCACTGTC 61.510 60.000 0.00 0.00 42.83 3.51
2400 2659 1.526917 GCCACTTCCACAGCACTGT 60.527 57.895 0.00 0.00 46.17 3.55
2404 2663 1.372683 GAGAGCCACTTCCACAGCA 59.627 57.895 0.00 0.00 0.00 4.41
2415 2676 1.650314 TTATGCGTCGACGAGAGCCA 61.650 55.000 39.74 26.93 43.02 4.75
2427 2688 1.154205 GCCATCTCGTGCTTATGCGT 61.154 55.000 0.00 0.00 43.34 5.24
2432 2693 1.153369 GCCTGCCATCTCGTGCTTA 60.153 57.895 0.00 0.00 0.00 3.09
2474 2735 4.527157 GTTGCCATCTGCGCTCGC 62.527 66.667 9.73 7.38 45.60 5.03
2480 2741 2.202349 GCGTTCGTTGCCATCTGC 60.202 61.111 0.00 0.00 41.77 4.26
2481 2742 1.154413 GTGCGTTCGTTGCCATCTG 60.154 57.895 0.00 0.00 0.00 2.90
2482 2743 1.568612 CTGTGCGTTCGTTGCCATCT 61.569 55.000 0.00 0.00 0.00 2.90
2483 2744 1.154413 CTGTGCGTTCGTTGCCATC 60.154 57.895 0.00 0.00 0.00 3.51
2485 2746 2.512745 ACTGTGCGTTCGTTGCCA 60.513 55.556 0.00 0.00 0.00 4.92
2487 2748 2.052237 CCACTGTGCGTTCGTTGC 60.052 61.111 1.29 0.00 0.00 4.17
2489 2750 1.594293 CCTCCACTGTGCGTTCGTT 60.594 57.895 1.29 0.00 0.00 3.85
2494 2755 4.008933 GCCTCCTCCACTGTGCGT 62.009 66.667 1.29 0.00 0.00 5.24
2500 2761 4.361971 TCGGACGCCTCCTCCACT 62.362 66.667 0.07 0.00 33.79 4.00
2501 2762 4.131088 GTCGGACGCCTCCTCCAC 62.131 72.222 0.07 0.00 33.79 4.02
2534 2795 2.203294 GGAAACTGGTGTGGGCGT 60.203 61.111 0.00 0.00 0.00 5.68
2536 2797 2.983592 CCGGAAACTGGTGTGGGC 60.984 66.667 0.00 0.00 0.00 5.36
2540 2801 0.818040 GTGAAGCCGGAAACTGGTGT 60.818 55.000 5.05 0.00 0.00 4.16
2542 2803 1.053424 TAGTGAAGCCGGAAACTGGT 58.947 50.000 5.05 0.00 0.00 4.00
2551 2812 2.511373 TGCGCCATAGTGAAGCCG 60.511 61.111 4.18 0.00 0.00 5.52
2552 2813 2.182842 CCTGCGCCATAGTGAAGCC 61.183 63.158 4.18 0.00 0.00 4.35
2571 2832 2.579201 CTCGTAGTGTGCCTGGGG 59.421 66.667 0.00 0.00 0.00 4.96
2579 2840 0.465705 CCATGATGGCCTCGTAGTGT 59.534 55.000 3.32 0.00 0.00 3.55
2592 2853 1.123077 TGCTTCTCCTACGCCATGAT 58.877 50.000 0.00 0.00 0.00 2.45
2601 2862 3.321111 GGATACATCGGTTGCTTCTCCTA 59.679 47.826 0.00 0.00 0.00 2.94
2612 2873 2.061578 TGGCGTGGGATACATCGGT 61.062 57.895 0.00 0.00 39.74 4.69
2617 2878 0.177836 CATCAGTGGCGTGGGATACA 59.822 55.000 0.00 0.00 39.74 2.29
2620 2881 2.124570 GCATCAGTGGCGTGGGAT 60.125 61.111 0.00 0.00 0.00 3.85
2621 2882 4.408821 GGCATCAGTGGCGTGGGA 62.409 66.667 0.00 0.00 41.35 4.37
2632 2893 1.141019 GTCTAGAACGCGGGCATCA 59.859 57.895 12.47 0.00 0.00 3.07
2646 2907 2.290768 ACTACTCCTCCTGCAACGTCTA 60.291 50.000 0.00 0.00 0.00 2.59
2652 2913 2.176889 GTACCACTACTCCTCCTGCAA 58.823 52.381 0.00 0.00 0.00 4.08
2666 2927 1.294459 GGGTCGGAGGTTGTACCAC 59.706 63.158 0.00 0.00 41.95 4.16
2680 2941 1.359475 GCGACATACTCGAGGGGTC 59.641 63.158 18.41 18.17 46.14 4.46
2683 2944 2.331805 CGGCGACATACTCGAGGG 59.668 66.667 18.41 8.40 46.14 4.30
2702 2963 2.094026 GGATTTTTCTGTGACCATGGCC 60.094 50.000 13.04 0.00 0.00 5.36
2703 2964 2.562298 TGGATTTTTCTGTGACCATGGC 59.438 45.455 13.04 5.35 0.00 4.40
2717 2978 6.248433 TGCTCATCTAGGAAACTTGGATTTT 58.752 36.000 0.00 0.00 43.67 1.82
2718 2979 5.819991 TGCTCATCTAGGAAACTTGGATTT 58.180 37.500 0.00 0.00 43.67 2.17
2724 2985 4.880696 GCTCATTGCTCATCTAGGAAACTT 59.119 41.667 0.00 0.00 39.20 2.66
2725 2986 4.450053 GCTCATTGCTCATCTAGGAAACT 58.550 43.478 0.00 0.00 39.20 2.66
2727 2988 3.118629 ACGCTCATTGCTCATCTAGGAAA 60.119 43.478 0.00 0.00 39.20 3.13
2733 2994 2.105006 ACAACGCTCATTGCTCATCT 57.895 45.000 0.00 0.00 40.11 2.90
2734 2995 2.030946 GGTACAACGCTCATTGCTCATC 59.969 50.000 0.00 0.00 40.11 2.92
2753 3014 3.339731 CGTTGTGCACGGATTGGT 58.660 55.556 13.13 0.00 45.89 3.67
2773 3034 1.300156 GCTCGCAGCGGATGTCATA 60.300 57.895 16.42 0.00 0.00 2.15
2774 3035 2.587194 GCTCGCAGCGGATGTCAT 60.587 61.111 16.42 0.00 0.00 3.06
2787 3048 1.638388 TTTCAAGCTGCCATCGCTCG 61.638 55.000 0.00 0.00 36.56 5.03
2797 3058 4.479619 GGATTAGTTGCACTTTCAAGCTG 58.520 43.478 0.00 0.00 0.00 4.24
2798 3059 3.507622 GGGATTAGTTGCACTTTCAAGCT 59.492 43.478 0.00 0.00 0.00 3.74
2799 3060 3.507622 AGGGATTAGTTGCACTTTCAAGC 59.492 43.478 0.00 0.00 0.00 4.01
2800 3061 4.082571 CCAGGGATTAGTTGCACTTTCAAG 60.083 45.833 0.00 0.00 0.00 3.02
2801 3062 3.826157 CCAGGGATTAGTTGCACTTTCAA 59.174 43.478 0.00 0.00 0.00 2.69
2802 3063 3.420893 CCAGGGATTAGTTGCACTTTCA 58.579 45.455 0.00 0.00 0.00 2.69
2803 3064 2.755103 CCCAGGGATTAGTTGCACTTTC 59.245 50.000 0.00 0.00 0.00 2.62
2804 3065 2.110011 ACCCAGGGATTAGTTGCACTTT 59.890 45.455 14.54 0.00 0.00 2.66
2805 3066 1.710809 ACCCAGGGATTAGTTGCACTT 59.289 47.619 14.54 0.00 0.00 3.16
2806 3067 1.004745 CACCCAGGGATTAGTTGCACT 59.995 52.381 14.54 0.00 0.00 4.40
2807 3068 1.463674 CACCCAGGGATTAGTTGCAC 58.536 55.000 14.54 0.00 0.00 4.57
2808 3069 0.331278 CCACCCAGGGATTAGTTGCA 59.669 55.000 14.54 0.00 0.00 4.08
2809 3070 0.331616 ACCACCCAGGGATTAGTTGC 59.668 55.000 14.54 0.00 43.89 4.17
2810 3071 2.899303 AACCACCCAGGGATTAGTTG 57.101 50.000 14.54 0.00 43.89 3.16
2811 3072 3.506398 CAAAACCACCCAGGGATTAGTT 58.494 45.455 14.54 6.93 43.89 2.24
2812 3073 2.225267 CCAAAACCACCCAGGGATTAGT 60.225 50.000 14.54 0.00 43.89 2.24
2813 3074 2.042433 TCCAAAACCACCCAGGGATTAG 59.958 50.000 14.54 0.00 43.89 1.73
2814 3075 2.074579 TCCAAAACCACCCAGGGATTA 58.925 47.619 14.54 0.00 43.89 1.75
2815 3076 0.863956 TCCAAAACCACCCAGGGATT 59.136 50.000 14.54 0.00 43.89 3.01
2816 3077 0.863956 TTCCAAAACCACCCAGGGAT 59.136 50.000 14.54 0.00 43.89 3.85
2817 3078 0.637195 TTTCCAAAACCACCCAGGGA 59.363 50.000 14.54 0.00 43.89 4.20
2818 3079 1.728323 ATTTCCAAAACCACCCAGGG 58.272 50.000 2.85 2.85 43.89 4.45
2819 3080 2.703007 TGAATTTCCAAAACCACCCAGG 59.297 45.455 0.00 0.00 45.67 4.45
2820 3081 4.622260 ATGAATTTCCAAAACCACCCAG 57.378 40.909 0.00 0.00 0.00 4.45
2821 3082 4.020662 GCTATGAATTTCCAAAACCACCCA 60.021 41.667 0.00 0.00 0.00 4.51
2822 3083 4.020662 TGCTATGAATTTCCAAAACCACCC 60.021 41.667 0.00 0.00 0.00 4.61
2823 3084 5.146010 TGCTATGAATTTCCAAAACCACC 57.854 39.130 0.00 0.00 0.00 4.61
2824 3085 5.988561 TGTTGCTATGAATTTCCAAAACCAC 59.011 36.000 0.00 0.00 0.00 4.16
2825 3086 6.166984 TGTTGCTATGAATTTCCAAAACCA 57.833 33.333 0.00 0.00 0.00 3.67
2826 3087 8.947055 ATATGTTGCTATGAATTTCCAAAACC 57.053 30.769 0.00 0.00 0.00 3.27
2828 3089 9.748708 GCTATATGTTGCTATGAATTTCCAAAA 57.251 29.630 0.00 0.00 0.00 2.44
2829 3090 9.135189 AGCTATATGTTGCTATGAATTTCCAAA 57.865 29.630 0.00 0.00 37.81 3.28
2830 3091 8.696043 AGCTATATGTTGCTATGAATTTCCAA 57.304 30.769 0.00 0.00 37.81 3.53
2831 3092 7.938490 TGAGCTATATGTTGCTATGAATTTCCA 59.062 33.333 0.00 0.00 39.91 3.53
2832 3093 8.327941 TGAGCTATATGTTGCTATGAATTTCC 57.672 34.615 0.00 0.00 39.91 3.13
2835 3096 9.511272 TCAATGAGCTATATGTTGCTATGAATT 57.489 29.630 0.00 0.00 39.91 2.17
2836 3097 9.511272 TTCAATGAGCTATATGTTGCTATGAAT 57.489 29.630 12.97 0.07 39.91 2.57
2837 3098 8.777413 GTTCAATGAGCTATATGTTGCTATGAA 58.223 33.333 12.97 12.97 39.91 2.57
2838 3099 8.152898 AGTTCAATGAGCTATATGTTGCTATGA 58.847 33.333 0.00 2.18 39.91 2.15
2839 3100 8.320396 AGTTCAATGAGCTATATGTTGCTATG 57.680 34.615 0.00 0.00 39.91 2.23
2842 3103 8.915057 ATTAGTTCAATGAGCTATATGTTGCT 57.085 30.769 7.63 0.00 42.82 3.91
2870 3131 9.784531 ACTTTCTGAAATAGTCATCTTGAAAGA 57.215 29.630 16.40 0.00 38.54 2.52
2873 3134 9.559732 TGAACTTTCTGAAATAGTCATCTTGAA 57.440 29.630 2.88 0.00 35.07 2.69
2874 3135 9.559732 TTGAACTTTCTGAAATAGTCATCTTGA 57.440 29.630 2.88 0.00 35.07 3.02
2877 3138 9.730705 TCATTGAACTTTCTGAAATAGTCATCT 57.269 29.630 2.88 0.00 35.07 2.90
2881 3142 9.565213 CCAATCATTGAACTTTCTGAAATAGTC 57.435 33.333 2.88 2.70 0.00 2.59
2882 3143 8.031277 GCCAATCATTGAACTTTCTGAAATAGT 58.969 33.333 2.88 0.00 0.00 2.12
2883 3144 8.030692 TGCCAATCATTGAACTTTCTGAAATAG 58.969 33.333 2.88 0.00 0.00 1.73
2884 3145 7.894708 TGCCAATCATTGAACTTTCTGAAATA 58.105 30.769 2.88 0.00 0.00 1.40
2885 3146 6.761312 TGCCAATCATTGAACTTTCTGAAAT 58.239 32.000 2.88 0.00 0.00 2.17
2886 3147 6.159299 TGCCAATCATTGAACTTTCTGAAA 57.841 33.333 0.00 2.44 0.00 2.69
2887 3148 5.787953 TGCCAATCATTGAACTTTCTGAA 57.212 34.783 0.00 0.00 0.00 3.02
2888 3149 5.336929 CCATGCCAATCATTGAACTTTCTGA 60.337 40.000 0.00 0.00 31.79 3.27
2889 3150 4.868171 CCATGCCAATCATTGAACTTTCTG 59.132 41.667 0.00 0.00 31.79 3.02
2890 3151 4.622220 GCCATGCCAATCATTGAACTTTCT 60.622 41.667 0.00 0.00 31.79 2.52
2891 3152 3.619929 GCCATGCCAATCATTGAACTTTC 59.380 43.478 0.00 0.00 31.79 2.62
2892 3153 3.008157 TGCCATGCCAATCATTGAACTTT 59.992 39.130 0.00 0.00 31.79 2.66
2893 3154 2.568062 TGCCATGCCAATCATTGAACTT 59.432 40.909 0.00 0.00 31.79 2.66
2894 3155 2.181125 TGCCATGCCAATCATTGAACT 58.819 42.857 0.00 0.00 31.79 3.01
2895 3156 2.676632 TGCCATGCCAATCATTGAAC 57.323 45.000 0.00 0.00 31.79 3.18
2896 3157 2.158885 CCATGCCATGCCAATCATTGAA 60.159 45.455 0.00 0.00 31.79 2.69
2897 3158 1.414550 CCATGCCATGCCAATCATTGA 59.585 47.619 0.00 0.00 31.79 2.57
2898 3159 1.414550 TCCATGCCATGCCAATCATTG 59.585 47.619 0.00 0.00 31.79 2.82
2899 3160 1.414919 GTCCATGCCATGCCAATCATT 59.585 47.619 0.00 0.00 31.79 2.57
2900 3161 1.045407 GTCCATGCCATGCCAATCAT 58.955 50.000 0.00 0.00 35.31 2.45
2901 3162 0.032912 AGTCCATGCCATGCCAATCA 60.033 50.000 0.00 0.00 0.00 2.57
2902 3163 1.884579 CTAGTCCATGCCATGCCAATC 59.115 52.381 0.00 0.00 0.00 2.67
2903 3164 1.496001 TCTAGTCCATGCCATGCCAAT 59.504 47.619 0.00 0.00 0.00 3.16
2904 3165 0.918258 TCTAGTCCATGCCATGCCAA 59.082 50.000 0.00 0.00 0.00 4.52
2905 3166 0.471191 CTCTAGTCCATGCCATGCCA 59.529 55.000 0.00 0.00 0.00 4.92
2906 3167 0.761187 TCTCTAGTCCATGCCATGCC 59.239 55.000 0.00 0.00 0.00 4.40
2907 3168 2.224475 ACATCTCTAGTCCATGCCATGC 60.224 50.000 0.00 0.00 0.00 4.06
2908 3169 3.400255 CACATCTCTAGTCCATGCCATG 58.600 50.000 0.00 0.00 0.00 3.66
2909 3170 3.766068 CACATCTCTAGTCCATGCCAT 57.234 47.619 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.