Multiple sequence alignment - TraesCS7A01G302600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G302600 chr7A 100.000 2630 0 0 1 2630 424533696 424536325 0.000000e+00 4857.0
1 TraesCS7A01G302600 chr7A 94.803 635 31 1 1 633 130300211 130300845 0.000000e+00 989.0
2 TraesCS7A01G302600 chr7A 94.016 635 36 1 1 633 42970648 42970014 0.000000e+00 961.0
3 TraesCS7A01G302600 chr7A 94.048 168 10 0 1721 1888 594940361 594940528 3.360000e-64 255.0
4 TraesCS7A01G302600 chr7A 82.667 75 11 2 2015 2087 424535659 424535733 6.080000e-07 65.8
5 TraesCS7A01G302600 chr7A 82.667 75 11 2 1964 2038 424535710 424535782 6.080000e-07 65.8
6 TraesCS7A01G302600 chr7A 95.000 40 1 1 675 713 617576682 617576721 7.860000e-06 62.1
7 TraesCS7A01G302600 chr7B 94.609 909 34 6 819 1727 372007977 372008870 0.000000e+00 1393.0
8 TraesCS7A01G302600 chr7B 92.899 169 12 0 1724 1892 511326495 511326327 2.020000e-61 246.0
9 TraesCS7A01G302600 chr7B 91.228 171 15 0 1722 1892 616285646 616285816 1.570000e-57 233.0
10 TraesCS7A01G302600 chr7B 98.182 55 1 0 733 787 372007926 372007980 2.150000e-16 97.1
11 TraesCS7A01G302600 chr7B 90.541 74 5 1 1891 1962 744693844 744693771 2.150000e-16 97.1
12 TraesCS7A01G302600 chr7B 96.429 56 2 0 1931 1986 745361563 745361618 2.790000e-15 93.5
13 TraesCS7A01G302600 chr7B 90.741 54 4 1 1934 1986 744693824 744693771 1.310000e-08 71.3
14 TraesCS7A01G302600 chr7B 93.478 46 2 1 638 683 721415899 721415943 1.690000e-07 67.6
15 TraesCS7A01G302600 chr7D 95.755 801 24 5 910 1710 376941044 376941834 0.000000e+00 1282.0
16 TraesCS7A01G302600 chr7D 83.163 196 6 12 733 927 376936471 376936640 1.260000e-33 154.0
17 TraesCS7A01G302600 chr1A 94.953 634 31 1 1 633 361379405 361378772 0.000000e+00 992.0
18 TraesCS7A01G302600 chr1A 93.750 48 3 0 627 674 361378806 361378759 3.630000e-09 73.1
19 TraesCS7A01G302600 chr5A 94.803 635 31 1 1 633 426267110 426266476 0.000000e+00 989.0
20 TraesCS7A01G302600 chr5A 88.264 622 72 1 983 1604 4080746 4081366 0.000000e+00 743.0
21 TraesCS7A01G302600 chr5A 89.337 347 37 0 2284 2630 67340556 67340210 1.120000e-118 436.0
22 TraesCS7A01G302600 chr3A 94.488 635 33 2 1 633 181138825 181139459 0.000000e+00 977.0
23 TraesCS7A01G302600 chr3A 85.376 465 68 0 1136 1600 449656805 449656341 1.420000e-132 483.0
24 TraesCS7A01G302600 chr3A 90.588 170 15 1 1723 1892 632421777 632421945 9.470000e-55 224.0
25 TraesCS7A01G302600 chr6A 93.858 635 37 1 1 633 60159199 60158565 0.000000e+00 955.0
26 TraesCS7A01G302600 chr6A 90.533 169 13 2 1724 1892 396383169 396383334 1.230000e-53 220.0
27 TraesCS7A01G302600 chr4A 93.858 635 37 1 1 633 520950711 520951345 0.000000e+00 955.0
28 TraesCS7A01G302600 chr4A 88.746 622 69 1 983 1604 17887863 17888483 0.000000e+00 760.0
29 TraesCS7A01G302600 chr4A 95.833 96 4 0 2535 2630 707873165 707873070 3.500000e-34 156.0
30 TraesCS7A01G302600 chr4A 89.831 59 5 1 627 684 668745052 668745110 1.010000e-09 75.0
31 TraesCS7A01G302600 chrUn 93.849 634 38 1 1 633 81781501 81780868 0.000000e+00 953.0
32 TraesCS7A01G302600 chrUn 91.071 168 12 2 1726 1893 91653348 91653512 9.470000e-55 224.0
33 TraesCS7A01G302600 chrUn 91.071 168 12 2 1726 1893 239778358 239778194 9.470000e-55 224.0
34 TraesCS7A01G302600 chr2A 93.849 634 38 1 1 633 28466308 28465675 0.000000e+00 953.0
35 TraesCS7A01G302600 chr2A 87.398 611 71 5 997 1604 764913451 764914058 0.000000e+00 697.0
36 TraesCS7A01G302600 chr2A 88.333 60 6 1 627 685 643018159 643018100 1.310000e-08 71.3
37 TraesCS7A01G302600 chr2B 90.663 739 27 15 1766 2487 29131720 29132433 0.000000e+00 944.0
38 TraesCS7A01G302600 chr2B 85.781 647 87 4 964 1607 798294634 798295278 0.000000e+00 680.0
39 TraesCS7A01G302600 chr2B 86.711 602 76 3 1008 1607 798702763 798702164 0.000000e+00 665.0
40 TraesCS7A01G302600 chr2B 90.533 169 15 1 1724 1892 483125177 483125344 3.410000e-54 222.0
41 TraesCS7A01G302600 chr2B 92.500 40 3 0 1964 2003 29131985 29132024 1.020000e-04 58.4
42 TraesCS7A01G302600 chr3D 85.591 465 67 0 1136 1600 332326891 332326427 3.040000e-134 488.0
43 TraesCS7A01G302600 chr3D 95.122 41 1 1 673 713 414778317 414778356 2.190000e-06 63.9
44 TraesCS7A01G302600 chr3D 92.857 42 2 1 673 713 415176883 415176924 2.830000e-05 60.2
45 TraesCS7A01G302600 chr2D 86.700 406 48 5 282 681 484919450 484919045 1.860000e-121 446.0
46 TraesCS7A01G302600 chr2D 100.000 39 0 0 675 713 27903201 27903163 3.630000e-09 73.1
47 TraesCS7A01G302600 chr5B 88.809 277 26 3 983 1256 6869388 6869662 4.190000e-88 335.0
48 TraesCS7A01G302600 chr5B 100.000 33 0 0 642 674 502476564 502476532 7.860000e-06 62.1
49 TraesCS7A01G302600 chr3B 93.413 167 11 0 1726 1892 728260627 728260793 5.620000e-62 248.0
50 TraesCS7A01G302600 chr6D 97.619 42 1 0 641 682 467021104 467021145 3.630000e-09 73.1
51 TraesCS7A01G302600 chr6D 91.489 47 4 0 627 673 390782513 390782559 6.080000e-07 65.8
52 TraesCS7A01G302600 chr4B 88.462 52 5 1 630 681 72649842 72649892 7.860000e-06 62.1
53 TraesCS7A01G302600 chr6B 89.583 48 3 2 675 720 93420108 93420155 2.830000e-05 60.2
54 TraesCS7A01G302600 chr5D 89.362 47 3 2 673 717 386178312 386178266 1.020000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G302600 chr7A 424533696 424536325 2629 False 1662.866667 4857 88.444667 1 2630 3 chr7A.!!$F4 2629
1 TraesCS7A01G302600 chr7A 130300211 130300845 634 False 989.000000 989 94.803000 1 633 1 chr7A.!!$F1 632
2 TraesCS7A01G302600 chr7A 42970014 42970648 634 True 961.000000 961 94.016000 1 633 1 chr7A.!!$R1 632
3 TraesCS7A01G302600 chr7B 372007926 372008870 944 False 745.050000 1393 96.395500 733 1727 2 chr7B.!!$F4 994
4 TraesCS7A01G302600 chr7D 376941044 376941834 790 False 1282.000000 1282 95.755000 910 1710 1 chr7D.!!$F2 800
5 TraesCS7A01G302600 chr1A 361378759 361379405 646 True 532.550000 992 94.351500 1 674 2 chr1A.!!$R1 673
6 TraesCS7A01G302600 chr5A 426266476 426267110 634 True 989.000000 989 94.803000 1 633 1 chr5A.!!$R2 632
7 TraesCS7A01G302600 chr5A 4080746 4081366 620 False 743.000000 743 88.264000 983 1604 1 chr5A.!!$F1 621
8 TraesCS7A01G302600 chr3A 181138825 181139459 634 False 977.000000 977 94.488000 1 633 1 chr3A.!!$F1 632
9 TraesCS7A01G302600 chr6A 60158565 60159199 634 True 955.000000 955 93.858000 1 633 1 chr6A.!!$R1 632
10 TraesCS7A01G302600 chr4A 520950711 520951345 634 False 955.000000 955 93.858000 1 633 1 chr4A.!!$F2 632
11 TraesCS7A01G302600 chr4A 17887863 17888483 620 False 760.000000 760 88.746000 983 1604 1 chr4A.!!$F1 621
12 TraesCS7A01G302600 chrUn 81780868 81781501 633 True 953.000000 953 93.849000 1 633 1 chrUn.!!$R1 632
13 TraesCS7A01G302600 chr2A 28465675 28466308 633 True 953.000000 953 93.849000 1 633 1 chr2A.!!$R1 632
14 TraesCS7A01G302600 chr2A 764913451 764914058 607 False 697.000000 697 87.398000 997 1604 1 chr2A.!!$F1 607
15 TraesCS7A01G302600 chr2B 798294634 798295278 644 False 680.000000 680 85.781000 964 1607 1 chr2B.!!$F2 643
16 TraesCS7A01G302600 chr2B 798702164 798702763 599 True 665.000000 665 86.711000 1008 1607 1 chr2B.!!$R1 599
17 TraesCS7A01G302600 chr2B 29131720 29132433 713 False 501.200000 944 91.581500 1766 2487 2 chr2B.!!$F3 721

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
978 983 0.039437 TCTTGACCGTTGTCGCTCTC 60.039 55.0 0.0 0.0 44.86 3.2 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2598 2627 0.107456 ATCAGCTGGCCGTGATAAGG 59.893 55.0 15.13 0.0 31.42 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
166 167 5.136828 TGGCAACTCTTCCTTTTTACATGA 58.863 37.500 0.00 0.00 37.61 3.07
236 237 2.999331 AGTGTTAGTGTGTGGCAACTT 58.001 42.857 0.00 0.00 37.61 2.66
370 371 2.621055 TGGCAACTGCAGTTAAACGAAT 59.379 40.909 30.67 4.52 44.36 3.34
484 485 1.533731 CGTGTGGGCGTTATCAACTTT 59.466 47.619 0.00 0.00 0.00 2.66
599 604 8.349983 GTTTCTCTTATACACCACACAAAATGT 58.650 33.333 0.00 0.00 44.81 2.71
610 615 1.967319 ACAAAATGTGTGAGCGGACT 58.033 45.000 0.00 0.00 39.72 3.85
611 616 1.603802 ACAAAATGTGTGAGCGGACTG 59.396 47.619 0.00 0.00 39.72 3.51
612 617 0.593128 AAAATGTGTGAGCGGACTGC 59.407 50.000 0.00 0.00 46.98 4.40
668 673 2.158017 CACACGTGTGGCATTTATCG 57.842 50.000 35.65 10.61 42.10 2.92
674 679 0.107897 TGTGGCATTTATCGGCGTCT 60.108 50.000 6.85 0.00 0.00 4.18
675 680 1.014352 GTGGCATTTATCGGCGTCTT 58.986 50.000 6.85 0.00 0.00 3.01
676 681 1.400494 GTGGCATTTATCGGCGTCTTT 59.600 47.619 6.85 0.00 0.00 2.52
677 682 2.610374 GTGGCATTTATCGGCGTCTTTA 59.390 45.455 6.85 0.00 0.00 1.85
678 683 3.250040 GTGGCATTTATCGGCGTCTTTAT 59.750 43.478 6.85 0.00 0.00 1.40
679 684 3.880490 TGGCATTTATCGGCGTCTTTATT 59.120 39.130 6.85 0.00 0.00 1.40
680 685 4.336993 TGGCATTTATCGGCGTCTTTATTT 59.663 37.500 6.85 0.00 0.00 1.40
681 686 5.163602 TGGCATTTATCGGCGTCTTTATTTT 60.164 36.000 6.85 0.00 0.00 1.82
682 687 6.038382 TGGCATTTATCGGCGTCTTTATTTTA 59.962 34.615 6.85 0.00 0.00 1.52
683 688 7.081976 GGCATTTATCGGCGTCTTTATTTTAT 58.918 34.615 6.85 0.00 0.00 1.40
684 689 7.593644 GGCATTTATCGGCGTCTTTATTTTATT 59.406 33.333 6.85 0.00 0.00 1.40
685 690 9.601971 GCATTTATCGGCGTCTTTATTTTATTA 57.398 29.630 6.85 0.00 0.00 0.98
784 789 7.420800 ACCGAAAAGTATATCTCGATACGTTT 58.579 34.615 0.00 7.30 42.71 3.60
785 790 7.377928 ACCGAAAAGTATATCTCGATACGTTTG 59.622 37.037 10.99 4.21 41.21 2.93
786 791 7.377928 CCGAAAAGTATATCTCGATACGTTTGT 59.622 37.037 10.99 0.00 41.21 2.83
787 792 8.740369 CGAAAAGTATATCTCGATACGTTTGTT 58.260 33.333 10.99 0.00 41.21 2.83
790 795 7.925703 AGTATATCTCGATACGTTTGTTTGG 57.074 36.000 0.00 0.00 37.37 3.28
791 796 5.652744 ATATCTCGATACGTTTGTTTGGC 57.347 39.130 0.00 0.00 0.00 4.52
792 797 2.756829 TCTCGATACGTTTGTTTGGCA 58.243 42.857 0.00 0.00 0.00 4.92
793 798 3.132160 TCTCGATACGTTTGTTTGGCAA 58.868 40.909 0.00 0.00 34.87 4.52
794 799 3.749088 TCTCGATACGTTTGTTTGGCAAT 59.251 39.130 0.00 0.00 36.89 3.56
795 800 4.930405 TCTCGATACGTTTGTTTGGCAATA 59.070 37.500 0.00 0.00 36.89 1.90
796 801 5.583061 TCTCGATACGTTTGTTTGGCAATAT 59.417 36.000 0.00 0.00 36.89 1.28
797 802 6.757478 TCTCGATACGTTTGTTTGGCAATATA 59.243 34.615 0.00 0.00 36.89 0.86
798 803 6.707711 TCGATACGTTTGTTTGGCAATATAC 58.292 36.000 0.00 0.00 36.89 1.47
799 804 6.313164 TCGATACGTTTGTTTGGCAATATACA 59.687 34.615 0.00 0.00 36.89 2.29
800 805 6.627276 CGATACGTTTGTTTGGCAATATACAG 59.373 38.462 0.00 0.00 36.89 2.74
801 806 5.699097 ACGTTTGTTTGGCAATATACAGT 57.301 34.783 0.00 0.00 36.89 3.55
802 807 6.804770 ACGTTTGTTTGGCAATATACAGTA 57.195 33.333 0.00 0.00 36.89 2.74
803 808 6.604930 ACGTTTGTTTGGCAATATACAGTAC 58.395 36.000 0.00 4.60 36.89 2.73
804 809 5.730802 CGTTTGTTTGGCAATATACAGTACG 59.269 40.000 17.59 17.59 36.89 3.67
805 810 5.804692 TTGTTTGGCAATATACAGTACGG 57.195 39.130 0.00 0.00 31.07 4.02
806 811 5.087391 TGTTTGGCAATATACAGTACGGA 57.913 39.130 0.00 0.00 0.00 4.69
807 812 5.113383 TGTTTGGCAATATACAGTACGGAG 58.887 41.667 0.00 0.00 0.00 4.63
808 813 6.798057 TTGTTTGGCAATATACAGTACGGAGT 60.798 38.462 0.00 0.00 36.94 3.85
809 814 6.127394 TGTTTGGCAATATACAGTACGGAGTA 60.127 38.462 0.00 0.00 45.11 2.59
959 964 3.774216 CTGATCTCTCTTCCCAACTCCTT 59.226 47.826 0.00 0.00 0.00 3.36
960 965 3.772025 TGATCTCTCTTCCCAACTCCTTC 59.228 47.826 0.00 0.00 0.00 3.46
961 966 3.551635 TCTCTCTTCCCAACTCCTTCT 57.448 47.619 0.00 0.00 0.00 2.85
977 982 0.387929 TTCTTGACCGTTGTCGCTCT 59.612 50.000 0.00 0.00 44.86 4.09
978 983 0.039437 TCTTGACCGTTGTCGCTCTC 60.039 55.000 0.00 0.00 44.86 3.20
979 984 1.337817 CTTGACCGTTGTCGCTCTCG 61.338 60.000 0.00 0.00 44.86 4.04
980 985 3.173240 GACCGTTGTCGCTCTCGC 61.173 66.667 0.00 0.00 35.54 5.03
981 986 3.612371 GACCGTTGTCGCTCTCGCT 62.612 63.158 0.00 0.00 35.54 4.93
982 987 2.876645 CCGTTGTCGCTCTCGCTC 60.877 66.667 0.00 0.00 35.54 5.03
985 990 2.126850 TTGTCGCTCTCGCTCGTG 60.127 61.111 0.00 0.00 35.26 4.35
1485 1497 2.203294 AACCTCCAAAAGCCGCGT 60.203 55.556 4.92 0.00 0.00 6.01
1593 1605 3.706373 GGCCGGAAGCTCCTCACA 61.706 66.667 5.05 0.00 43.05 3.58
1610 1622 1.451567 CAGGCGACTACTCCTCCGA 60.452 63.158 0.00 0.00 40.21 4.55
1663 1675 0.103208 GTCGTCCCATGTCCTGCTAG 59.897 60.000 0.00 0.00 0.00 3.42
1680 1692 2.036604 GCTAGATCTACCAGCTCCCAAC 59.963 54.545 8.46 0.00 32.46 3.77
1733 1745 4.832590 TCTCATAACGCTAAGACTAGCC 57.167 45.455 0.00 0.00 46.80 3.93
1734 1746 4.204799 TCTCATAACGCTAAGACTAGCCA 58.795 43.478 0.00 0.00 46.80 4.75
1735 1747 4.827835 TCTCATAACGCTAAGACTAGCCAT 59.172 41.667 0.00 0.00 46.80 4.40
1736 1748 6.002082 TCTCATAACGCTAAGACTAGCCATA 58.998 40.000 0.00 0.00 46.80 2.74
1737 1749 6.489022 TCTCATAACGCTAAGACTAGCCATAA 59.511 38.462 0.00 0.00 46.80 1.90
1738 1750 7.176865 TCTCATAACGCTAAGACTAGCCATAAT 59.823 37.037 0.00 0.00 46.80 1.28
1739 1751 7.090808 TCATAACGCTAAGACTAGCCATAATG 58.909 38.462 0.00 0.00 46.80 1.90
1740 1752 4.258702 ACGCTAAGACTAGCCATAATGG 57.741 45.455 0.00 0.00 46.80 3.16
1741 1753 3.006967 ACGCTAAGACTAGCCATAATGGG 59.993 47.826 0.00 0.00 46.80 4.00
1742 1754 3.617531 CGCTAAGACTAGCCATAATGGGG 60.618 52.174 0.00 0.00 46.80 4.96
1743 1755 3.583086 GCTAAGACTAGCCATAATGGGGA 59.417 47.826 0.00 0.00 44.22 4.81
1744 1756 4.323104 GCTAAGACTAGCCATAATGGGGAG 60.323 50.000 0.00 0.00 44.22 4.30
1745 1757 3.352611 AGACTAGCCATAATGGGGAGT 57.647 47.619 0.00 0.00 38.19 3.85
1746 1758 4.487282 AGACTAGCCATAATGGGGAGTA 57.513 45.455 0.00 0.00 38.19 2.59
1747 1759 4.827789 AGACTAGCCATAATGGGGAGTAA 58.172 43.478 0.00 0.00 38.19 2.24
1748 1760 4.593634 AGACTAGCCATAATGGGGAGTAAC 59.406 45.833 0.00 0.00 38.19 2.50
1749 1761 4.303794 ACTAGCCATAATGGGGAGTAACA 58.696 43.478 0.00 0.00 38.19 2.41
1750 1762 4.913968 ACTAGCCATAATGGGGAGTAACAT 59.086 41.667 0.00 0.00 38.19 2.71
1751 1763 6.088819 ACTAGCCATAATGGGGAGTAACATA 58.911 40.000 0.00 0.00 38.19 2.29
1752 1764 5.505181 AGCCATAATGGGGAGTAACATAG 57.495 43.478 0.00 0.00 38.19 2.23
1753 1765 5.162637 AGCCATAATGGGGAGTAACATAGA 58.837 41.667 0.00 0.00 38.19 1.98
1754 1766 5.249393 AGCCATAATGGGGAGTAACATAGAG 59.751 44.000 0.00 0.00 38.19 2.43
1755 1767 5.013183 GCCATAATGGGGAGTAACATAGAGT 59.987 44.000 0.00 0.00 38.19 3.24
1756 1768 6.212791 GCCATAATGGGGAGTAACATAGAGTA 59.787 42.308 0.00 0.00 38.19 2.59
1757 1769 7.579723 GCCATAATGGGGAGTAACATAGAGTAG 60.580 44.444 0.00 0.00 38.19 2.57
1758 1770 7.455008 CCATAATGGGGAGTAACATAGAGTAGT 59.545 40.741 0.00 0.00 32.67 2.73
1759 1771 9.529823 CATAATGGGGAGTAACATAGAGTAGTA 57.470 37.037 0.00 0.00 0.00 1.82
1761 1773 7.836479 ATGGGGAGTAACATAGAGTAGTAAC 57.164 40.000 0.00 0.00 0.00 2.50
1762 1774 6.734532 TGGGGAGTAACATAGAGTAGTAACA 58.265 40.000 0.00 0.00 0.00 2.41
1763 1775 7.359849 TGGGGAGTAACATAGAGTAGTAACAT 58.640 38.462 0.00 0.00 0.00 2.71
1764 1776 7.287005 TGGGGAGTAACATAGAGTAGTAACATG 59.713 40.741 0.00 0.00 0.00 3.21
1796 1808 8.747471 GTTACTACTCTTTGTTACTACCTCCAT 58.253 37.037 0.00 0.00 0.00 3.41
1813 1825 6.446451 ACCTCCATAGTGGGTAGTAACATAA 58.554 40.000 0.00 0.00 38.32 1.90
1846 1858 5.012975 ACATGGAGGTTGCCATTTATTGTTT 59.987 36.000 0.00 0.00 46.29 2.83
1894 1921 6.239217 ACTTTGTGATCTATATGTGGCTGA 57.761 37.500 0.00 0.00 0.00 4.26
1907 1934 1.070445 GGCTGATCGGTCCATCAGG 59.930 63.158 22.39 11.48 46.95 3.86
1926 1953 6.166984 TCAGGTGCACAATTAAAAATCCAA 57.833 33.333 20.43 0.00 0.00 3.53
1927 1954 6.767456 TCAGGTGCACAATTAAAAATCCAAT 58.233 32.000 20.43 0.00 0.00 3.16
1981 2010 8.131100 CACACAATAATAATCCATCAGGTTCAC 58.869 37.037 0.00 0.00 35.89 3.18
2001 2030 2.105134 ACACAATAAACTGACCGGGACA 59.895 45.455 6.32 4.75 0.00 4.02
2046 2075 4.819630 TCAGGTTCACACAATAAACTGACC 59.180 41.667 0.00 0.00 42.88 4.02
2062 2091 0.874390 GACCGAGACAAAATGCAGCA 59.126 50.000 0.00 0.00 0.00 4.41
2067 2096 1.881973 GAGACAAAATGCAGCAGGACA 59.118 47.619 0.00 0.00 0.00 4.02
2070 2099 3.322828 AGACAAAATGCAGCAGGACAATT 59.677 39.130 0.00 0.00 0.00 2.32
2071 2100 4.523943 AGACAAAATGCAGCAGGACAATTA 59.476 37.500 0.00 0.00 0.00 1.40
2072 2101 5.186409 AGACAAAATGCAGCAGGACAATTAT 59.814 36.000 0.00 0.00 0.00 1.28
2073 2102 5.413499 ACAAAATGCAGCAGGACAATTATC 58.587 37.500 0.00 0.00 0.00 1.75
2074 2103 5.047164 ACAAAATGCAGCAGGACAATTATCA 60.047 36.000 0.00 0.00 0.00 2.15
2075 2104 5.664294 AAATGCAGCAGGACAATTATCAA 57.336 34.783 0.00 0.00 0.00 2.57
2076 2105 4.913335 ATGCAGCAGGACAATTATCAAG 57.087 40.909 0.00 0.00 0.00 3.02
2077 2106 3.689347 TGCAGCAGGACAATTATCAAGT 58.311 40.909 0.00 0.00 0.00 3.16
2078 2107 4.081406 TGCAGCAGGACAATTATCAAGTT 58.919 39.130 0.00 0.00 0.00 2.66
2079 2108 4.156556 TGCAGCAGGACAATTATCAAGTTC 59.843 41.667 0.00 0.00 0.00 3.01
2080 2109 4.156556 GCAGCAGGACAATTATCAAGTTCA 59.843 41.667 0.00 0.00 0.00 3.18
2081 2110 5.634896 CAGCAGGACAATTATCAAGTTCAC 58.365 41.667 0.00 0.00 0.00 3.18
2082 2111 5.181811 CAGCAGGACAATTATCAAGTTCACA 59.818 40.000 0.00 0.00 0.00 3.58
2083 2112 5.182001 AGCAGGACAATTATCAAGTTCACAC 59.818 40.000 0.00 0.00 0.00 3.82
2084 2113 5.048782 GCAGGACAATTATCAAGTTCACACA 60.049 40.000 0.00 0.00 0.00 3.72
2085 2114 6.514870 GCAGGACAATTATCAAGTTCACACAA 60.515 38.462 0.00 0.00 0.00 3.33
2086 2115 7.596494 CAGGACAATTATCAAGTTCACACAAT 58.404 34.615 0.00 0.00 0.00 2.71
2087 2116 8.084073 CAGGACAATTATCAAGTTCACACAATT 58.916 33.333 0.00 0.00 0.00 2.32
2088 2117 9.295825 AGGACAATTATCAAGTTCACACAATTA 57.704 29.630 0.00 0.00 0.00 1.40
2089 2118 9.906660 GGACAATTATCAAGTTCACACAATTAA 57.093 29.630 0.00 0.00 0.00 1.40
2091 2120 9.912634 ACAATTATCAAGTTCACACAATTAAGG 57.087 29.630 0.00 0.00 0.00 2.69
2095 2124 6.817765 TCAAGTTCACACAATTAAGGATCC 57.182 37.500 2.48 2.48 0.00 3.36
2096 2125 6.303054 TCAAGTTCACACAATTAAGGATCCA 58.697 36.000 15.82 0.00 0.00 3.41
2097 2126 6.206634 TCAAGTTCACACAATTAAGGATCCAC 59.793 38.462 15.82 0.00 0.00 4.02
2098 2127 5.010282 AGTTCACACAATTAAGGATCCACC 58.990 41.667 15.82 0.00 39.35 4.61
2137 2166 4.752101 ACTGACTGAATGTAGCTGAACAAC 59.248 41.667 0.00 0.00 32.02 3.32
2167 2196 5.166398 TCTGATATGCTTCATAGTGCATCG 58.834 41.667 3.65 0.00 45.50 3.84
2186 2215 3.750371 TCGCTTCTTTCCCTTCAATCAA 58.250 40.909 0.00 0.00 0.00 2.57
2194 2223 2.238521 TCCCTTCAATCAACTTGCCAC 58.761 47.619 0.00 0.00 34.66 5.01
2261 2290 9.260002 GTATGATTCAGGTTCACAACAAAAATT 57.740 29.630 0.00 0.00 0.00 1.82
2266 2295 6.037098 TCAGGTTCACAACAAAAATTAACCG 58.963 36.000 0.00 0.00 39.84 4.44
2270 2299 8.414778 AGGTTCACAACAAAAATTAACCGATTA 58.585 29.630 0.00 0.00 39.84 1.75
2338 2367 2.166459 GGGCTCCATTTTACTCAAAGCC 59.834 50.000 1.89 1.89 39.01 4.35
2362 2391 0.164647 CAAGTCGAGCCTTTTCAGCG 59.835 55.000 0.00 0.00 34.64 5.18
2440 2469 4.362932 TGTTTTGTTGTTGATCTTCGCA 57.637 36.364 0.00 0.00 0.00 5.10
2487 2516 1.556911 CACCTGGCTGTCTATCACCTT 59.443 52.381 0.00 0.00 0.00 3.50
2488 2517 2.026822 CACCTGGCTGTCTATCACCTTT 60.027 50.000 0.00 0.00 0.00 3.11
2489 2518 2.644798 ACCTGGCTGTCTATCACCTTTT 59.355 45.455 0.00 0.00 0.00 2.27
2490 2519 3.012518 CCTGGCTGTCTATCACCTTTTG 58.987 50.000 0.00 0.00 0.00 2.44
2491 2520 3.307691 CCTGGCTGTCTATCACCTTTTGA 60.308 47.826 0.00 0.00 39.11 2.69
2492 2521 3.674997 TGGCTGTCTATCACCTTTTGAC 58.325 45.455 0.00 0.00 36.92 3.18
2493 2522 2.673368 GGCTGTCTATCACCTTTTGACG 59.327 50.000 0.00 0.00 36.92 4.35
2494 2523 2.673368 GCTGTCTATCACCTTTTGACGG 59.327 50.000 0.00 0.00 36.92 4.79
2495 2524 3.864921 GCTGTCTATCACCTTTTGACGGT 60.865 47.826 0.00 0.00 36.92 4.83
2496 2525 3.921677 TGTCTATCACCTTTTGACGGTC 58.078 45.455 0.00 0.00 36.92 4.79
2497 2526 3.259902 GTCTATCACCTTTTGACGGTCC 58.740 50.000 5.55 0.00 36.92 4.46
2498 2527 3.056035 GTCTATCACCTTTTGACGGTCCT 60.056 47.826 5.55 0.00 36.92 3.85
2499 2528 2.474410 ATCACCTTTTGACGGTCCTC 57.526 50.000 5.55 0.00 36.92 3.71
2500 2529 0.395312 TCACCTTTTGACGGTCCTCC 59.605 55.000 5.55 0.00 30.82 4.30
2501 2530 0.107831 CACCTTTTGACGGTCCTCCA 59.892 55.000 5.55 0.00 30.82 3.86
2502 2531 1.064825 ACCTTTTGACGGTCCTCCAT 58.935 50.000 5.55 0.00 0.00 3.41
2503 2532 1.423921 ACCTTTTGACGGTCCTCCATT 59.576 47.619 5.55 0.00 0.00 3.16
2504 2533 1.812571 CCTTTTGACGGTCCTCCATTG 59.187 52.381 5.55 0.00 0.00 2.82
2505 2534 2.552155 CCTTTTGACGGTCCTCCATTGA 60.552 50.000 5.55 0.00 0.00 2.57
2506 2535 3.347216 CTTTTGACGGTCCTCCATTGAT 58.653 45.455 5.55 0.00 0.00 2.57
2507 2536 3.433306 TTTGACGGTCCTCCATTGATT 57.567 42.857 5.55 0.00 0.00 2.57
2508 2537 2.401583 TGACGGTCCTCCATTGATTG 57.598 50.000 5.55 0.00 0.00 2.67
2509 2538 1.905894 TGACGGTCCTCCATTGATTGA 59.094 47.619 5.55 0.00 0.00 2.57
2510 2539 2.505407 TGACGGTCCTCCATTGATTGAT 59.495 45.455 5.55 0.00 0.00 2.57
2511 2540 3.054434 TGACGGTCCTCCATTGATTGATT 60.054 43.478 5.55 0.00 0.00 2.57
2512 2541 3.282021 ACGGTCCTCCATTGATTGATTG 58.718 45.455 0.00 0.00 0.00 2.67
2513 2542 3.282021 CGGTCCTCCATTGATTGATTGT 58.718 45.455 0.00 0.00 0.00 2.71
2514 2543 3.696051 CGGTCCTCCATTGATTGATTGTT 59.304 43.478 0.00 0.00 0.00 2.83
2515 2544 4.881273 CGGTCCTCCATTGATTGATTGTTA 59.119 41.667 0.00 0.00 0.00 2.41
2516 2545 5.356751 CGGTCCTCCATTGATTGATTGTTAA 59.643 40.000 0.00 0.00 0.00 2.01
2517 2546 6.564328 GGTCCTCCATTGATTGATTGTTAAC 58.436 40.000 0.00 0.00 0.00 2.01
2518 2547 6.405842 GGTCCTCCATTGATTGATTGTTAACC 60.406 42.308 2.48 0.00 0.00 2.85
2519 2548 6.378280 GTCCTCCATTGATTGATTGTTAACCT 59.622 38.462 2.48 0.00 0.00 3.50
2520 2549 6.603201 TCCTCCATTGATTGATTGTTAACCTC 59.397 38.462 2.48 0.83 0.00 3.85
2521 2550 6.435430 TCCATTGATTGATTGTTAACCTCG 57.565 37.500 2.48 0.00 0.00 4.63
2522 2551 6.176896 TCCATTGATTGATTGTTAACCTCGA 58.823 36.000 2.48 0.62 0.00 4.04
2523 2552 6.828273 TCCATTGATTGATTGTTAACCTCGAT 59.172 34.615 2.48 5.54 0.00 3.59
2524 2553 6.914215 CCATTGATTGATTGTTAACCTCGATG 59.086 38.462 2.48 6.06 0.00 3.84
2525 2554 7.201723 CCATTGATTGATTGTTAACCTCGATGA 60.202 37.037 2.48 0.00 0.00 2.92
2526 2555 7.680442 TTGATTGATTGTTAACCTCGATGAA 57.320 32.000 2.48 3.69 0.00 2.57
2527 2556 7.864108 TGATTGATTGTTAACCTCGATGAAT 57.136 32.000 2.48 0.00 0.00 2.57
2528 2557 8.279970 TGATTGATTGTTAACCTCGATGAATT 57.720 30.769 2.48 0.00 0.00 2.17
2529 2558 8.739039 TGATTGATTGTTAACCTCGATGAATTT 58.261 29.630 2.48 0.00 0.00 1.82
2530 2559 9.573133 GATTGATTGTTAACCTCGATGAATTTT 57.427 29.630 2.48 0.00 0.00 1.82
2531 2560 9.927668 ATTGATTGTTAACCTCGATGAATTTTT 57.072 25.926 2.48 0.00 0.00 1.94
2532 2561 8.964420 TGATTGTTAACCTCGATGAATTTTTC 57.036 30.769 2.48 0.00 0.00 2.29
2533 2562 8.026607 TGATTGTTAACCTCGATGAATTTTTCC 58.973 33.333 2.48 0.00 0.00 3.13
2534 2563 6.885952 TGTTAACCTCGATGAATTTTTCCA 57.114 33.333 2.48 0.00 0.00 3.53
2535 2564 7.278461 TGTTAACCTCGATGAATTTTTCCAA 57.722 32.000 2.48 0.00 0.00 3.53
2536 2565 7.891561 TGTTAACCTCGATGAATTTTTCCAAT 58.108 30.769 2.48 0.00 0.00 3.16
2537 2566 8.026607 TGTTAACCTCGATGAATTTTTCCAATC 58.973 33.333 2.48 0.00 0.00 2.67
2538 2567 6.840780 AACCTCGATGAATTTTTCCAATCT 57.159 33.333 0.00 0.00 0.00 2.40
2539 2568 6.840780 ACCTCGATGAATTTTTCCAATCTT 57.159 33.333 0.00 0.00 0.00 2.40
2540 2569 7.232118 ACCTCGATGAATTTTTCCAATCTTT 57.768 32.000 0.00 0.00 0.00 2.52
2541 2570 7.315890 ACCTCGATGAATTTTTCCAATCTTTC 58.684 34.615 0.00 0.00 0.00 2.62
2542 2571 7.177392 ACCTCGATGAATTTTTCCAATCTTTCT 59.823 33.333 0.00 0.00 0.00 2.52
2543 2572 7.699812 CCTCGATGAATTTTTCCAATCTTTCTC 59.300 37.037 0.00 0.00 0.00 2.87
2544 2573 7.538575 TCGATGAATTTTTCCAATCTTTCTCC 58.461 34.615 0.00 0.00 0.00 3.71
2545 2574 7.176515 TCGATGAATTTTTCCAATCTTTCTCCA 59.823 33.333 0.00 0.00 0.00 3.86
2546 2575 7.814107 CGATGAATTTTTCCAATCTTTCTCCAA 59.186 33.333 0.00 0.00 0.00 3.53
2547 2576 9.148104 GATGAATTTTTCCAATCTTTCTCCAAG 57.852 33.333 0.00 0.00 0.00 3.61
2548 2577 6.930722 TGAATTTTTCCAATCTTTCTCCAAGC 59.069 34.615 0.00 0.00 31.70 4.01
2549 2578 6.676990 ATTTTTCCAATCTTTCTCCAAGCT 57.323 33.333 0.00 0.00 31.70 3.74
2550 2579 5.712152 TTTTCCAATCTTTCTCCAAGCTC 57.288 39.130 0.00 0.00 31.70 4.09
2551 2580 4.647564 TTCCAATCTTTCTCCAAGCTCT 57.352 40.909 0.00 0.00 31.70 4.09
2552 2581 4.647564 TCCAATCTTTCTCCAAGCTCTT 57.352 40.909 0.00 0.00 31.70 2.85
2553 2582 4.330250 TCCAATCTTTCTCCAAGCTCTTG 58.670 43.478 2.74 2.74 40.13 3.02
2554 2583 4.077822 CCAATCTTTCTCCAAGCTCTTGT 58.922 43.478 8.60 0.00 38.85 3.16
2555 2584 4.082895 CCAATCTTTCTCCAAGCTCTTGTG 60.083 45.833 8.60 2.21 38.85 3.33
2556 2585 4.630644 ATCTTTCTCCAAGCTCTTGTGA 57.369 40.909 8.60 4.26 38.85 3.58
2557 2586 4.000331 TCTTTCTCCAAGCTCTTGTGAG 58.000 45.455 15.68 15.68 42.96 3.51
2558 2587 3.643320 TCTTTCTCCAAGCTCTTGTGAGA 59.357 43.478 18.33 18.33 42.73 3.27
2566 2595 2.989480 CTCTTGTGAGAGCCCTCCT 58.011 57.895 0.00 0.00 42.72 3.69
2567 2596 0.536260 CTCTTGTGAGAGCCCTCCTG 59.464 60.000 0.00 0.00 42.72 3.86
2568 2597 0.115152 TCTTGTGAGAGCCCTCCTGA 59.885 55.000 0.00 0.00 38.66 3.86
2569 2598 0.248843 CTTGTGAGAGCCCTCCTGAC 59.751 60.000 0.00 0.00 38.66 3.51
2570 2599 0.178921 TTGTGAGAGCCCTCCTGACT 60.179 55.000 0.00 0.00 38.66 3.41
2571 2600 0.178921 TGTGAGAGCCCTCCTGACTT 60.179 55.000 0.00 0.00 38.66 3.01
2572 2601 0.248843 GTGAGAGCCCTCCTGACTTG 59.751 60.000 0.00 0.00 38.66 3.16
2573 2602 1.220477 GAGAGCCCTCCTGACTTGC 59.780 63.158 0.00 0.00 33.30 4.01
2574 2603 2.250741 GAGAGCCCTCCTGACTTGCC 62.251 65.000 0.00 0.00 33.30 4.52
2575 2604 2.204059 AGCCCTCCTGACTTGCCT 60.204 61.111 0.00 0.00 0.00 4.75
2576 2605 1.846712 GAGCCCTCCTGACTTGCCTT 61.847 60.000 0.00 0.00 0.00 4.35
2577 2606 1.075659 GCCCTCCTGACTTGCCTTT 59.924 57.895 0.00 0.00 0.00 3.11
2578 2607 0.328258 GCCCTCCTGACTTGCCTTTA 59.672 55.000 0.00 0.00 0.00 1.85
2579 2608 1.950954 GCCCTCCTGACTTGCCTTTAC 60.951 57.143 0.00 0.00 0.00 2.01
2580 2609 1.340114 CCCTCCTGACTTGCCTTTACC 60.340 57.143 0.00 0.00 0.00 2.85
2581 2610 1.351017 CCTCCTGACTTGCCTTTACCA 59.649 52.381 0.00 0.00 0.00 3.25
2582 2611 2.616510 CCTCCTGACTTGCCTTTACCAG 60.617 54.545 0.00 0.00 0.00 4.00
2583 2612 1.168714 CCTGACTTGCCTTTACCAGC 58.831 55.000 0.00 0.00 0.00 4.85
2584 2613 1.545428 CCTGACTTGCCTTTACCAGCA 60.545 52.381 0.00 0.00 37.18 4.41
2585 2614 1.537202 CTGACTTGCCTTTACCAGCAC 59.463 52.381 0.00 0.00 39.10 4.40
2586 2615 0.517316 GACTTGCCTTTACCAGCACG 59.483 55.000 0.00 0.00 39.10 5.34
2587 2616 0.179029 ACTTGCCTTTACCAGCACGT 60.179 50.000 0.00 0.00 39.10 4.49
2588 2617 0.951558 CTTGCCTTTACCAGCACGTT 59.048 50.000 0.00 0.00 39.10 3.99
2589 2618 0.948678 TTGCCTTTACCAGCACGTTC 59.051 50.000 0.00 0.00 39.10 3.95
2590 2619 0.179043 TGCCTTTACCAGCACGTTCA 60.179 50.000 0.00 0.00 33.08 3.18
2591 2620 0.948678 GCCTTTACCAGCACGTTCAA 59.051 50.000 0.00 0.00 0.00 2.69
2592 2621 1.334689 GCCTTTACCAGCACGTTCAAC 60.335 52.381 0.00 0.00 0.00 3.18
2593 2622 1.265905 CCTTTACCAGCACGTTCAACC 59.734 52.381 0.00 0.00 0.00 3.77
2594 2623 2.218603 CTTTACCAGCACGTTCAACCT 58.781 47.619 0.00 0.00 0.00 3.50
2595 2624 2.335316 TTACCAGCACGTTCAACCTT 57.665 45.000 0.00 0.00 0.00 3.50
2596 2625 3.472283 TTACCAGCACGTTCAACCTTA 57.528 42.857 0.00 0.00 0.00 2.69
2597 2626 1.878953 ACCAGCACGTTCAACCTTAG 58.121 50.000 0.00 0.00 0.00 2.18
2598 2627 0.517316 CCAGCACGTTCAACCTTAGC 59.483 55.000 0.00 0.00 0.00 3.09
2599 2628 0.517316 CAGCACGTTCAACCTTAGCC 59.483 55.000 0.00 0.00 0.00 3.93
2600 2629 0.396811 AGCACGTTCAACCTTAGCCT 59.603 50.000 0.00 0.00 0.00 4.58
2601 2630 1.202770 AGCACGTTCAACCTTAGCCTT 60.203 47.619 0.00 0.00 0.00 4.35
2602 2631 2.038033 AGCACGTTCAACCTTAGCCTTA 59.962 45.455 0.00 0.00 0.00 2.69
2603 2632 3.007635 GCACGTTCAACCTTAGCCTTAT 58.992 45.455 0.00 0.00 0.00 1.73
2604 2633 3.063588 GCACGTTCAACCTTAGCCTTATC 59.936 47.826 0.00 0.00 0.00 1.75
2605 2634 4.250464 CACGTTCAACCTTAGCCTTATCA 58.750 43.478 0.00 0.00 0.00 2.15
2606 2635 4.092968 CACGTTCAACCTTAGCCTTATCAC 59.907 45.833 0.00 0.00 0.00 3.06
2607 2636 3.306166 CGTTCAACCTTAGCCTTATCACG 59.694 47.826 0.00 0.00 0.00 4.35
2608 2637 3.536956 TCAACCTTAGCCTTATCACGG 57.463 47.619 0.00 0.00 0.00 4.94
2614 2643 2.190578 GCCTTATCACGGCCAGCT 59.809 61.111 2.24 0.00 41.73 4.24
2615 2644 2.182842 GCCTTATCACGGCCAGCTG 61.183 63.158 6.78 6.78 41.73 4.24
2616 2645 1.522092 CCTTATCACGGCCAGCTGA 59.478 57.895 17.39 0.00 0.00 4.26
2617 2646 0.107456 CCTTATCACGGCCAGCTGAT 59.893 55.000 17.39 8.16 0.00 2.90
2618 2647 1.224075 CTTATCACGGCCAGCTGATG 58.776 55.000 17.39 8.06 0.00 3.07
2627 2656 4.172512 CAGCTGATGGGCGCTCCT 62.173 66.667 8.42 0.00 33.45 3.69
2628 2657 3.859414 AGCTGATGGGCGCTCCTC 61.859 66.667 3.94 4.83 37.29 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 1.336517 GCACACTAGGCAGTTGTCGTA 60.337 52.381 0.00 0.00 30.46 3.43
95 96 2.006888 GCCATGTACATGCACGTTAGT 58.993 47.619 27.27 0.00 37.49 2.24
125 126 3.604961 GCCATCTGCTTACGTGTACGTC 61.605 54.545 13.84 0.63 44.18 4.34
130 131 1.156736 GTTGCCATCTGCTTACGTGT 58.843 50.000 0.00 0.00 42.00 4.49
370 371 0.396695 GGTCCAGACCCTCGTCCATA 60.397 60.000 5.46 0.00 45.68 2.74
410 411 2.357034 GCCACACGTGACGGTCAT 60.357 61.111 25.01 0.00 0.00 3.06
422 423 4.758251 CTGATCCCGCACGCCACA 62.758 66.667 0.00 0.00 0.00 4.17
460 461 1.142314 GATAACGCCCACACGCCTA 59.858 57.895 0.00 0.00 36.19 3.93
599 604 1.372499 GTTACGCAGTCCGCTCACA 60.372 57.895 0.00 0.00 43.93 3.58
600 605 2.434134 CGTTACGCAGTCCGCTCAC 61.434 63.158 0.00 0.00 43.93 3.51
601 606 2.126618 CGTTACGCAGTCCGCTCA 60.127 61.111 0.00 0.00 43.93 4.26
612 617 2.659244 ACACGTGTGGGCGTTACG 60.659 61.111 22.71 0.00 43.83 3.18
613 618 2.932905 CACACGTGTGGGCGTTAC 59.067 61.111 35.65 0.00 43.83 2.50
621 626 4.602259 AGTCCGGCCACACGTGTG 62.602 66.667 36.13 36.13 45.23 3.82
622 627 4.602259 CAGTCCGGCCACACGTGT 62.602 66.667 17.22 17.22 0.00 4.49
632 637 4.832608 GGGCGTTAGGCAGTCCGG 62.833 72.222 0.00 0.00 46.16 5.14
682 687 9.734620 TTGCGTAGTAATACGTGTCTTATTAAT 57.265 29.630 22.09 0.00 44.53 1.40
683 688 9.566530 TTTGCGTAGTAATACGTGTCTTATTAA 57.433 29.630 22.09 3.91 44.53 1.40
684 689 9.566530 TTTTGCGTAGTAATACGTGTCTTATTA 57.433 29.630 22.09 0.00 44.53 0.98
685 690 8.464770 TTTTGCGTAGTAATACGTGTCTTATT 57.535 30.769 22.09 0.00 44.53 1.40
686 691 8.464770 TTTTTGCGTAGTAATACGTGTCTTAT 57.535 30.769 22.09 0.00 44.53 1.73
687 692 7.865875 TTTTTGCGTAGTAATACGTGTCTTA 57.134 32.000 22.09 3.64 44.53 2.10
688 693 6.768029 TTTTTGCGTAGTAATACGTGTCTT 57.232 33.333 22.09 0.00 44.53 3.01
784 789 5.087391 TCCGTACTGTATATTGCCAAACA 57.913 39.130 0.00 0.00 0.00 2.83
785 790 5.114081 ACTCCGTACTGTATATTGCCAAAC 58.886 41.667 0.00 0.00 0.00 2.93
786 791 5.347620 ACTCCGTACTGTATATTGCCAAA 57.652 39.130 0.00 0.00 0.00 3.28
787 792 6.265876 TGATACTCCGTACTGTATATTGCCAA 59.734 38.462 0.00 0.00 30.49 4.52
788 793 5.771165 TGATACTCCGTACTGTATATTGCCA 59.229 40.000 0.00 0.00 30.49 4.92
789 794 6.263516 TGATACTCCGTACTGTATATTGCC 57.736 41.667 0.00 0.00 30.49 4.52
790 795 8.758633 ATTTGATACTCCGTACTGTATATTGC 57.241 34.615 0.00 0.00 30.49 3.56
795 800 8.910944 ACAACTATTTGATACTCCGTACTGTAT 58.089 33.333 0.00 0.00 36.48 2.29
796 801 8.284945 ACAACTATTTGATACTCCGTACTGTA 57.715 34.615 0.00 0.00 36.48 2.74
797 802 7.166691 ACAACTATTTGATACTCCGTACTGT 57.833 36.000 0.00 0.00 36.48 3.55
798 803 6.696148 GGACAACTATTTGATACTCCGTACTG 59.304 42.308 0.00 0.00 36.48 2.74
799 804 6.606395 AGGACAACTATTTGATACTCCGTACT 59.394 38.462 0.00 0.00 36.48 2.73
800 805 6.803642 AGGACAACTATTTGATACTCCGTAC 58.196 40.000 0.00 0.00 36.48 3.67
801 806 6.832384 AGAGGACAACTATTTGATACTCCGTA 59.168 38.462 0.00 0.00 36.48 4.02
802 807 5.657302 AGAGGACAACTATTTGATACTCCGT 59.343 40.000 0.00 0.00 36.48 4.69
803 808 6.150396 AGAGGACAACTATTTGATACTCCG 57.850 41.667 0.00 0.00 36.48 4.63
804 809 6.463190 GGGAGAGGACAACTATTTGATACTCC 60.463 46.154 16.14 16.14 39.09 3.85
805 810 6.098409 TGGGAGAGGACAACTATTTGATACTC 59.902 42.308 0.00 4.46 36.48 2.59
806 811 5.964477 TGGGAGAGGACAACTATTTGATACT 59.036 40.000 0.00 0.00 36.48 2.12
807 812 6.235231 TGGGAGAGGACAACTATTTGATAC 57.765 41.667 0.00 0.00 36.48 2.24
808 813 6.043243 GGATGGGAGAGGACAACTATTTGATA 59.957 42.308 0.00 0.00 36.48 2.15
809 814 5.163152 GGATGGGAGAGGACAACTATTTGAT 60.163 44.000 0.00 0.00 36.48 2.57
810 815 4.164221 GGATGGGAGAGGACAACTATTTGA 59.836 45.833 0.00 0.00 36.48 2.69
811 816 4.455606 GGATGGGAGAGGACAACTATTTG 58.544 47.826 0.00 0.00 38.83 2.32
812 817 3.459969 GGGATGGGAGAGGACAACTATTT 59.540 47.826 0.00 0.00 0.00 1.40
813 818 3.049344 GGGATGGGAGAGGACAACTATT 58.951 50.000 0.00 0.00 0.00 1.73
814 819 2.695585 GGGATGGGAGAGGACAACTAT 58.304 52.381 0.00 0.00 0.00 2.12
815 820 1.688311 CGGGATGGGAGAGGACAACTA 60.688 57.143 0.00 0.00 0.00 2.24
816 821 0.978146 CGGGATGGGAGAGGACAACT 60.978 60.000 0.00 0.00 0.00 3.16
817 822 1.522569 CGGGATGGGAGAGGACAAC 59.477 63.158 0.00 0.00 0.00 3.32
818 823 2.367202 GCGGGATGGGAGAGGACAA 61.367 63.158 0.00 0.00 0.00 3.18
823 828 1.026718 GTTGTTGCGGGATGGGAGAG 61.027 60.000 0.00 0.00 0.00 3.20
977 982 1.350319 GTTTGTGTTGCACGAGCGA 59.650 52.632 0.00 0.00 46.23 4.93
978 983 1.654137 GGTTTGTGTTGCACGAGCG 60.654 57.895 0.00 0.00 46.23 5.03
979 984 1.654137 CGGTTTGTGTTGCACGAGC 60.654 57.895 0.00 0.00 37.14 5.03
980 985 1.654137 GCGGTTTGTGTTGCACGAG 60.654 57.895 0.00 0.00 37.14 4.18
981 986 1.923227 TTGCGGTTTGTGTTGCACGA 61.923 50.000 0.00 0.00 37.14 4.35
982 987 0.869454 ATTGCGGTTTGTGTTGCACG 60.869 50.000 0.00 0.00 37.14 5.34
985 990 1.830368 GCCATTGCGGTTTGTGTTGC 61.830 55.000 0.00 0.00 36.97 4.17
1046 1058 4.429212 TGACGGTGGCGGTGATCG 62.429 66.667 0.00 0.00 42.76 3.69
1345 1357 2.708255 CTCGAGGCCGTAGTCGTC 59.292 66.667 11.41 0.00 37.46 4.20
1474 1486 1.669760 TGACCCTACGCGGCTTTTG 60.670 57.895 12.47 0.00 0.00 2.44
1476 1488 2.047560 GTGACCCTACGCGGCTTT 60.048 61.111 12.47 0.00 0.00 3.51
1485 1497 2.766651 GGCCCCATCGTGACCCTA 60.767 66.667 0.00 0.00 0.00 3.53
1593 1605 1.451747 GTCGGAGGAGTAGTCGCCT 60.452 63.158 6.55 0.00 46.18 5.52
1610 1622 3.244981 ACCTCAGTAGTTCTCCTCTTCGT 60.245 47.826 0.00 0.00 0.00 3.85
1621 1633 3.430929 GGCAATCGATCACCTCAGTAGTT 60.431 47.826 0.00 0.00 0.00 2.24
1663 1675 3.301274 AGTAGTTGGGAGCTGGTAGATC 58.699 50.000 0.00 0.00 0.00 2.75
1727 1739 4.303794 TGTTACTCCCCATTATGGCTAGT 58.696 43.478 16.97 16.97 35.79 2.57
1728 1740 4.974645 TGTTACTCCCCATTATGGCTAG 57.025 45.455 5.57 7.54 35.79 3.42
1729 1741 6.327781 TCTATGTTACTCCCCATTATGGCTA 58.672 40.000 5.57 0.00 35.79 3.93
1730 1742 5.162637 TCTATGTTACTCCCCATTATGGCT 58.837 41.667 5.57 0.00 35.79 4.75
1731 1743 5.013183 ACTCTATGTTACTCCCCATTATGGC 59.987 44.000 5.57 0.00 35.79 4.40
1732 1744 6.688073 ACTCTATGTTACTCCCCATTATGG 57.312 41.667 3.85 3.85 37.25 2.74
1733 1745 8.423906 ACTACTCTATGTTACTCCCCATTATG 57.576 38.462 0.00 0.00 0.00 1.90
1735 1747 9.359653 GTTACTACTCTATGTTACTCCCCATTA 57.640 37.037 0.00 0.00 0.00 1.90
1736 1748 7.842743 TGTTACTACTCTATGTTACTCCCCATT 59.157 37.037 0.00 0.00 0.00 3.16
1737 1749 7.359849 TGTTACTACTCTATGTTACTCCCCAT 58.640 38.462 0.00 0.00 0.00 4.00
1738 1750 6.734532 TGTTACTACTCTATGTTACTCCCCA 58.265 40.000 0.00 0.00 0.00 4.96
1739 1751 7.659186 CATGTTACTACTCTATGTTACTCCCC 58.341 42.308 0.00 0.00 0.00 4.81
1740 1752 7.146648 GCATGTTACTACTCTATGTTACTCCC 58.853 42.308 0.00 0.00 0.00 4.30
1741 1753 7.713750 TGCATGTTACTACTCTATGTTACTCC 58.286 38.462 0.00 0.00 0.00 3.85
1777 1789 6.407074 CCCACTATGGAGGTAGTAACAAAGAG 60.407 46.154 0.00 0.00 40.96 2.85
1781 1793 4.691238 ACCCACTATGGAGGTAGTAACAA 58.309 43.478 0.00 0.00 40.96 2.83
1796 1808 9.989296 TTACTACCTTTATGTTACTACCCACTA 57.011 33.333 0.00 0.00 0.00 2.74
1813 1825 3.308188 GGCAACCTCCATGTTACTACCTT 60.308 47.826 0.00 0.00 0.00 3.50
1894 1921 1.221840 GTGCACCTGATGGACCGAT 59.778 57.895 5.22 0.00 43.60 4.18
1907 1934 9.971744 GAACATATTGGATTTTTAATTGTGCAC 57.028 29.630 10.75 10.75 0.00 4.57
1927 1954 9.241919 ACTTGATGGATTGTTATTGTGAACATA 57.758 29.630 0.00 0.00 39.04 2.29
1981 2010 2.773487 TGTCCCGGTCAGTTTATTGTG 58.227 47.619 0.00 0.00 0.00 3.33
2001 2030 8.111959 CCTGATGGATTGTTCAACACTTTTGTT 61.112 37.037 0.00 0.00 40.35 2.83
2046 2075 1.135859 GTCCTGCTGCATTTTGTCTCG 60.136 52.381 1.31 0.00 0.00 4.04
2062 2091 7.765695 ATTGTGTGAACTTGATAATTGTCCT 57.234 32.000 0.00 0.00 0.00 3.85
2070 2099 8.106462 TGGATCCTTAATTGTGTGAACTTGATA 58.894 33.333 14.23 0.00 0.00 2.15
2071 2100 6.947733 TGGATCCTTAATTGTGTGAACTTGAT 59.052 34.615 14.23 0.00 0.00 2.57
2072 2101 6.206634 GTGGATCCTTAATTGTGTGAACTTGA 59.793 38.462 14.23 0.00 0.00 3.02
2073 2102 6.381801 GTGGATCCTTAATTGTGTGAACTTG 58.618 40.000 14.23 0.00 0.00 3.16
2074 2103 5.476945 GGTGGATCCTTAATTGTGTGAACTT 59.523 40.000 14.23 0.00 0.00 2.66
2075 2104 5.010282 GGTGGATCCTTAATTGTGTGAACT 58.990 41.667 14.23 0.00 0.00 3.01
2076 2105 5.010282 AGGTGGATCCTTAATTGTGTGAAC 58.990 41.667 14.23 0.00 45.67 3.18
2077 2106 5.255397 AGGTGGATCCTTAATTGTGTGAA 57.745 39.130 14.23 0.00 45.67 3.18
2078 2107 4.927267 AGGTGGATCCTTAATTGTGTGA 57.073 40.909 14.23 0.00 45.67 3.58
2079 2108 5.745227 ACTAGGTGGATCCTTAATTGTGTG 58.255 41.667 14.23 0.00 45.67 3.82
2080 2109 6.012858 TGAACTAGGTGGATCCTTAATTGTGT 60.013 38.462 14.23 0.00 45.67 3.72
2081 2110 6.316390 GTGAACTAGGTGGATCCTTAATTGTG 59.684 42.308 14.23 0.00 45.67 3.33
2082 2111 6.012858 TGTGAACTAGGTGGATCCTTAATTGT 60.013 38.462 14.23 2.36 45.67 2.71
2083 2112 6.316390 GTGTGAACTAGGTGGATCCTTAATTG 59.684 42.308 14.23 1.73 45.67 2.32
2084 2113 6.415573 GTGTGAACTAGGTGGATCCTTAATT 58.584 40.000 14.23 0.00 45.67 1.40
2085 2114 5.104485 GGTGTGAACTAGGTGGATCCTTAAT 60.104 44.000 14.23 0.00 45.67 1.40
2086 2115 4.224370 GGTGTGAACTAGGTGGATCCTTAA 59.776 45.833 14.23 0.00 45.67 1.85
2087 2116 3.773119 GGTGTGAACTAGGTGGATCCTTA 59.227 47.826 14.23 2.36 45.67 2.69
2088 2117 2.572104 GGTGTGAACTAGGTGGATCCTT 59.428 50.000 14.23 0.00 45.67 3.36
2090 2119 1.906574 TGGTGTGAACTAGGTGGATCC 59.093 52.381 4.20 4.20 0.00 3.36
2091 2120 3.914426 ATGGTGTGAACTAGGTGGATC 57.086 47.619 0.00 0.00 0.00 3.36
2092 2121 5.250774 AGTTAATGGTGTGAACTAGGTGGAT 59.749 40.000 0.00 0.00 31.69 3.41
2093 2122 4.595781 AGTTAATGGTGTGAACTAGGTGGA 59.404 41.667 0.00 0.00 31.69 4.02
2094 2123 4.695455 CAGTTAATGGTGTGAACTAGGTGG 59.305 45.833 0.00 0.00 32.22 4.61
2095 2124 5.408604 GTCAGTTAATGGTGTGAACTAGGTG 59.591 44.000 0.00 0.00 32.22 4.00
2096 2125 5.307196 AGTCAGTTAATGGTGTGAACTAGGT 59.693 40.000 0.00 0.00 32.22 3.08
2097 2126 5.639506 CAGTCAGTTAATGGTGTGAACTAGG 59.360 44.000 0.00 0.00 32.22 3.02
2098 2127 6.455647 TCAGTCAGTTAATGGTGTGAACTAG 58.544 40.000 0.00 0.00 32.22 2.57
2099 2128 6.413783 TCAGTCAGTTAATGGTGTGAACTA 57.586 37.500 0.00 0.00 32.22 2.24
2100 2129 5.290493 TCAGTCAGTTAATGGTGTGAACT 57.710 39.130 0.00 0.00 33.71 3.01
2101 2130 6.017109 ACATTCAGTCAGTTAATGGTGTGAAC 60.017 38.462 0.00 0.00 35.40 3.18
2137 2166 7.490840 CACTATGAAGCATATCAGAGGATAGG 58.509 42.308 11.74 0.00 41.76 2.57
2167 2196 5.225642 CAAGTTGATTGAAGGGAAAGAAGC 58.774 41.667 0.00 0.00 41.83 3.86
2186 2215 3.275617 TTTGTCTACTGTGTGGCAAGT 57.724 42.857 0.00 0.00 0.00 3.16
2222 2251 4.318332 TGAATCATACCATTCGGATCAGC 58.682 43.478 0.00 0.00 35.78 4.26
2313 2342 3.737559 TGAGTAAAATGGAGCCCATGT 57.262 42.857 7.40 0.00 44.40 3.21
2338 2367 3.067106 TGAAAAGGCTCGACTTGCTAAG 58.933 45.455 0.00 0.00 0.00 2.18
2362 2391 4.302455 CGGACACATCTAAGATGGATGAC 58.698 47.826 11.20 2.25 42.02 3.06
2415 2444 6.312426 TGCGAAGATCAACAACAAAACAAAAT 59.688 30.769 0.00 0.00 0.00 1.82
2440 2469 6.705302 TCTATCAAATCAACAGCTTGAGACT 58.295 36.000 0.00 0.00 39.83 3.24
2487 2516 3.081061 CAATCAATGGAGGACCGTCAAA 58.919 45.455 0.00 0.00 39.42 2.69
2488 2517 2.304470 TCAATCAATGGAGGACCGTCAA 59.696 45.455 0.00 0.00 39.42 3.18
2489 2518 1.905894 TCAATCAATGGAGGACCGTCA 59.094 47.619 0.00 0.00 39.42 4.35
2490 2519 2.691409 TCAATCAATGGAGGACCGTC 57.309 50.000 0.00 0.00 39.42 4.79
2491 2520 3.282021 CAATCAATCAATGGAGGACCGT 58.718 45.455 0.00 0.00 39.42 4.83
2492 2521 3.282021 ACAATCAATCAATGGAGGACCG 58.718 45.455 0.00 0.00 39.42 4.79
2493 2522 6.405842 GGTTAACAATCAATCAATGGAGGACC 60.406 42.308 8.10 0.00 0.00 4.46
2494 2523 6.378280 AGGTTAACAATCAATCAATGGAGGAC 59.622 38.462 8.10 0.00 0.00 3.85
2495 2524 6.493166 AGGTTAACAATCAATCAATGGAGGA 58.507 36.000 8.10 0.00 0.00 3.71
2496 2525 6.458751 CGAGGTTAACAATCAATCAATGGAGG 60.459 42.308 8.10 0.00 0.00 4.30
2497 2526 6.316140 TCGAGGTTAACAATCAATCAATGGAG 59.684 38.462 8.10 0.00 0.00 3.86
2498 2527 6.176896 TCGAGGTTAACAATCAATCAATGGA 58.823 36.000 8.10 0.00 0.00 3.41
2499 2528 6.435430 TCGAGGTTAACAATCAATCAATGG 57.565 37.500 8.10 0.00 0.00 3.16
2500 2529 7.696755 TCATCGAGGTTAACAATCAATCAATG 58.303 34.615 8.10 4.68 0.00 2.82
2501 2530 7.864108 TCATCGAGGTTAACAATCAATCAAT 57.136 32.000 8.10 0.00 0.00 2.57
2502 2531 7.680442 TTCATCGAGGTTAACAATCAATCAA 57.320 32.000 8.10 0.00 0.00 2.57
2503 2532 7.864108 ATTCATCGAGGTTAACAATCAATCA 57.136 32.000 8.10 0.00 0.00 2.57
2504 2533 9.573133 AAAATTCATCGAGGTTAACAATCAATC 57.427 29.630 8.10 0.00 0.00 2.67
2505 2534 9.927668 AAAAATTCATCGAGGTTAACAATCAAT 57.072 25.926 8.10 0.00 0.00 2.57
2506 2535 9.405587 GAAAAATTCATCGAGGTTAACAATCAA 57.594 29.630 8.10 0.00 0.00 2.57
2507 2536 8.026607 GGAAAAATTCATCGAGGTTAACAATCA 58.973 33.333 8.10 0.00 0.00 2.57
2508 2537 8.026607 TGGAAAAATTCATCGAGGTTAACAATC 58.973 33.333 8.10 4.06 0.00 2.67
2509 2538 7.891561 TGGAAAAATTCATCGAGGTTAACAAT 58.108 30.769 8.10 0.00 0.00 2.71
2510 2539 7.278461 TGGAAAAATTCATCGAGGTTAACAA 57.722 32.000 8.10 0.00 0.00 2.83
2511 2540 6.885952 TGGAAAAATTCATCGAGGTTAACA 57.114 33.333 8.10 0.00 0.00 2.41
2512 2541 8.244113 AGATTGGAAAAATTCATCGAGGTTAAC 58.756 33.333 0.00 0.00 0.00 2.01
2513 2542 8.348285 AGATTGGAAAAATTCATCGAGGTTAA 57.652 30.769 0.00 0.00 0.00 2.01
2514 2543 7.938140 AGATTGGAAAAATTCATCGAGGTTA 57.062 32.000 0.00 0.00 0.00 2.85
2515 2544 6.840780 AGATTGGAAAAATTCATCGAGGTT 57.159 33.333 0.00 0.00 0.00 3.50
2516 2545 6.840780 AAGATTGGAAAAATTCATCGAGGT 57.159 33.333 0.00 0.00 0.00 3.85
2517 2546 7.542025 AGAAAGATTGGAAAAATTCATCGAGG 58.458 34.615 0.00 0.00 0.00 4.63
2518 2547 7.699812 GGAGAAAGATTGGAAAAATTCATCGAG 59.300 37.037 0.00 0.00 0.00 4.04
2519 2548 7.176515 TGGAGAAAGATTGGAAAAATTCATCGA 59.823 33.333 0.00 0.00 0.00 3.59
2520 2549 7.315142 TGGAGAAAGATTGGAAAAATTCATCG 58.685 34.615 0.00 0.00 0.00 3.84
2521 2550 9.148104 CTTGGAGAAAGATTGGAAAAATTCATC 57.852 33.333 0.00 0.00 38.24 2.92
2522 2551 7.605309 GCTTGGAGAAAGATTGGAAAAATTCAT 59.395 33.333 0.00 0.00 38.24 2.57
2523 2552 6.930722 GCTTGGAGAAAGATTGGAAAAATTCA 59.069 34.615 0.00 0.00 38.24 2.57
2524 2553 7.157347 AGCTTGGAGAAAGATTGGAAAAATTC 58.843 34.615 0.00 0.00 38.24 2.17
2525 2554 7.015974 AGAGCTTGGAGAAAGATTGGAAAAATT 59.984 33.333 0.00 0.00 38.24 1.82
2526 2555 6.496218 AGAGCTTGGAGAAAGATTGGAAAAAT 59.504 34.615 0.00 0.00 38.24 1.82
2527 2556 5.835280 AGAGCTTGGAGAAAGATTGGAAAAA 59.165 36.000 0.00 0.00 38.24 1.94
2528 2557 5.388654 AGAGCTTGGAGAAAGATTGGAAAA 58.611 37.500 0.00 0.00 38.24 2.29
2529 2558 4.990526 AGAGCTTGGAGAAAGATTGGAAA 58.009 39.130 0.00 0.00 38.24 3.13
2530 2559 4.647564 AGAGCTTGGAGAAAGATTGGAA 57.352 40.909 0.00 0.00 38.24 3.53
2531 2560 4.202503 ACAAGAGCTTGGAGAAAGATTGGA 60.203 41.667 14.14 0.00 44.45 3.53
2532 2561 4.077822 ACAAGAGCTTGGAGAAAGATTGG 58.922 43.478 14.14 0.00 44.45 3.16
2533 2562 4.758674 TCACAAGAGCTTGGAGAAAGATTG 59.241 41.667 14.14 1.29 44.45 2.67
2534 2563 4.978099 TCACAAGAGCTTGGAGAAAGATT 58.022 39.130 14.14 0.00 44.45 2.40
2535 2564 4.285517 TCTCACAAGAGCTTGGAGAAAGAT 59.714 41.667 19.72 0.00 44.45 2.40
2536 2565 3.643320 TCTCACAAGAGCTTGGAGAAAGA 59.357 43.478 19.72 10.91 44.45 2.52
2537 2566 3.995705 CTCTCACAAGAGCTTGGAGAAAG 59.004 47.826 21.09 10.88 42.54 2.62
2538 2567 4.000331 CTCTCACAAGAGCTTGGAGAAA 58.000 45.455 21.09 6.76 42.54 2.52
2539 2568 3.674528 CTCTCACAAGAGCTTGGAGAA 57.325 47.619 21.09 12.07 42.54 2.87
2549 2578 0.115152 TCAGGAGGGCTCTCACAAGA 59.885 55.000 17.22 4.14 41.69 3.02
2550 2579 0.248843 GTCAGGAGGGCTCTCACAAG 59.751 60.000 17.22 1.53 41.69 3.16
2551 2580 0.178921 AGTCAGGAGGGCTCTCACAA 60.179 55.000 17.22 0.00 41.69 3.33
2552 2581 0.178921 AAGTCAGGAGGGCTCTCACA 60.179 55.000 17.22 0.00 41.69 3.58
2553 2582 0.248843 CAAGTCAGGAGGGCTCTCAC 59.751 60.000 17.22 5.06 41.69 3.51
2554 2583 1.548357 GCAAGTCAGGAGGGCTCTCA 61.548 60.000 17.22 0.00 41.69 3.27
2555 2584 1.220477 GCAAGTCAGGAGGGCTCTC 59.780 63.158 4.50 4.50 39.25 3.20
2556 2585 2.297129 GGCAAGTCAGGAGGGCTCT 61.297 63.158 0.00 0.00 0.00 4.09
2557 2586 1.846712 AAGGCAAGTCAGGAGGGCTC 61.847 60.000 0.00 0.00 34.83 4.70
2558 2587 1.430369 AAAGGCAAGTCAGGAGGGCT 61.430 55.000 0.00 0.00 37.82 5.19
2559 2588 0.328258 TAAAGGCAAGTCAGGAGGGC 59.672 55.000 0.00 0.00 0.00 5.19
2560 2589 1.340114 GGTAAAGGCAAGTCAGGAGGG 60.340 57.143 0.00 0.00 0.00 4.30
2561 2590 1.351017 TGGTAAAGGCAAGTCAGGAGG 59.649 52.381 0.00 0.00 0.00 4.30
2562 2591 2.704572 CTGGTAAAGGCAAGTCAGGAG 58.295 52.381 0.00 0.00 0.00 3.69
2563 2592 1.271379 GCTGGTAAAGGCAAGTCAGGA 60.271 52.381 0.00 0.00 0.00 3.86
2564 2593 1.168714 GCTGGTAAAGGCAAGTCAGG 58.831 55.000 0.00 0.00 0.00 3.86
2565 2594 1.537202 GTGCTGGTAAAGGCAAGTCAG 59.463 52.381 0.00 0.00 40.26 3.51
2566 2595 1.604604 GTGCTGGTAAAGGCAAGTCA 58.395 50.000 0.00 0.00 40.26 3.41
2567 2596 0.517316 CGTGCTGGTAAAGGCAAGTC 59.483 55.000 0.00 0.00 40.26 3.01
2568 2597 0.179029 ACGTGCTGGTAAAGGCAAGT 60.179 50.000 0.00 0.00 43.74 3.16
2569 2598 0.951558 AACGTGCTGGTAAAGGCAAG 59.048 50.000 0.00 0.00 42.01 4.01
2570 2599 0.948678 GAACGTGCTGGTAAAGGCAA 59.051 50.000 0.00 0.00 40.26 4.52
2571 2600 0.179043 TGAACGTGCTGGTAAAGGCA 60.179 50.000 0.00 0.00 36.01 4.75
2572 2601 0.948678 TTGAACGTGCTGGTAAAGGC 59.051 50.000 0.00 0.00 0.00 4.35
2573 2602 1.265905 GGTTGAACGTGCTGGTAAAGG 59.734 52.381 0.00 0.00 0.00 3.11
2574 2603 2.218603 AGGTTGAACGTGCTGGTAAAG 58.781 47.619 0.00 0.00 0.00 1.85
2575 2604 2.335316 AGGTTGAACGTGCTGGTAAA 57.665 45.000 0.00 0.00 0.00 2.01
2576 2605 2.335316 AAGGTTGAACGTGCTGGTAA 57.665 45.000 0.00 0.00 0.00 2.85
2577 2606 2.868839 GCTAAGGTTGAACGTGCTGGTA 60.869 50.000 0.00 0.00 0.00 3.25
2578 2607 1.878953 CTAAGGTTGAACGTGCTGGT 58.121 50.000 0.00 0.00 0.00 4.00
2579 2608 0.517316 GCTAAGGTTGAACGTGCTGG 59.483 55.000 0.00 0.00 0.00 4.85
2580 2609 0.517316 GGCTAAGGTTGAACGTGCTG 59.483 55.000 0.00 0.00 0.00 4.41
2581 2610 0.396811 AGGCTAAGGTTGAACGTGCT 59.603 50.000 0.00 0.00 0.00 4.40
2582 2611 1.235724 AAGGCTAAGGTTGAACGTGC 58.764 50.000 0.00 0.00 0.00 5.34
2583 2612 4.092968 GTGATAAGGCTAAGGTTGAACGTG 59.907 45.833 0.00 0.00 0.00 4.49
2584 2613 4.251268 GTGATAAGGCTAAGGTTGAACGT 58.749 43.478 0.00 0.00 0.00 3.99
2585 2614 3.306166 CGTGATAAGGCTAAGGTTGAACG 59.694 47.826 0.00 0.00 0.00 3.95
2586 2615 3.621715 CCGTGATAAGGCTAAGGTTGAAC 59.378 47.826 0.00 0.00 0.00 3.18
2587 2616 3.869065 CCGTGATAAGGCTAAGGTTGAA 58.131 45.455 0.00 0.00 0.00 2.69
2588 2617 3.536956 CCGTGATAAGGCTAAGGTTGA 57.463 47.619 0.00 0.00 0.00 3.18
2598 2627 0.107456 ATCAGCTGGCCGTGATAAGG 59.893 55.000 15.13 0.00 31.42 2.69
2599 2628 1.224075 CATCAGCTGGCCGTGATAAG 58.776 55.000 15.13 0.00 31.99 1.73
2600 2629 0.179048 CCATCAGCTGGCCGTGATAA 60.179 55.000 15.13 0.00 38.47 1.75
2601 2630 1.447217 CCATCAGCTGGCCGTGATA 59.553 57.895 15.13 0.00 38.47 2.15
2602 2631 2.191375 CCATCAGCTGGCCGTGAT 59.809 61.111 15.13 8.83 38.47 3.06
2603 2632 4.100084 CCCATCAGCTGGCCGTGA 62.100 66.667 15.13 0.70 44.46 4.35
2610 2639 4.172512 AGGAGCGCCCATCAGCTG 62.173 66.667 7.63 7.63 44.69 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.