Multiple sequence alignment - TraesCS7A01G302400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G302400 chr7A 100.000 6501 0 0 1 6501 424309140 424315640 0.000000e+00 12006
1 TraesCS7A01G302400 chr7A 97.106 864 25 0 1 864 602760485 602761348 0.000000e+00 1458
2 TraesCS7A01G302400 chr7D 95.675 4855 153 30 1174 6013 376553787 376558599 0.000000e+00 7749
3 TraesCS7A01G302400 chr7D 96.626 326 5 3 865 1188 376553444 376553765 2.670000e-148 536
4 TraesCS7A01G302400 chr7D 86.977 215 15 5 6288 6500 376558709 376558912 5.070000e-56 230
5 TraesCS7A01G302400 chr7D 88.535 157 14 2 6150 6306 34757018 34756866 3.090000e-43 187
6 TraesCS7A01G302400 chr7B 95.140 2181 98 4 2172 4350 371728642 371730816 0.000000e+00 3434
7 TraesCS7A01G302400 chr7B 95.564 1330 41 9 4387 5713 371730817 371732131 0.000000e+00 2113
8 TraesCS7A01G302400 chr7B 92.480 1343 55 23 865 2185 371727308 371728626 0.000000e+00 1879
9 TraesCS7A01G302400 chr7B 91.209 91 8 0 5710 5800 371732279 371732369 2.460000e-24 124
10 TraesCS7A01G302400 chr1B 98.727 864 11 0 1 864 422462304 422463167 0.000000e+00 1535
11 TraesCS7A01G302400 chr1B 89.091 165 12 6 6149 6313 632021078 632020920 3.980000e-47 200
12 TraesCS7A01G302400 chr4B 98.495 864 13 0 1 864 22219051 22219914 0.000000e+00 1524
13 TraesCS7A01G302400 chr4B 87.952 166 15 3 6149 6314 483581987 483582147 2.390000e-44 191
14 TraesCS7A01G302400 chr4A 98.260 862 15 0 1 862 626080463 626079602 0.000000e+00 1509
15 TraesCS7A01G302400 chr4A 85.965 171 19 3 6148 6317 363744549 363744715 1.860000e-40 178
16 TraesCS7A01G302400 chr3A 95.949 864 31 1 1 864 713866619 713867478 0.000000e+00 1399
17 TraesCS7A01G302400 chr3A 95.838 865 32 1 1 865 486108233 486109093 0.000000e+00 1395
18 TraesCS7A01G302400 chr3A 95.486 864 38 1 2 864 154935149 154936012 0.000000e+00 1378
19 TraesCS7A01G302400 chr3A 78.333 240 43 6 2670 2903 55505052 55504816 5.250000e-31 147
20 TraesCS7A01G302400 chr2A 95.139 864 40 2 2 864 461401500 461400638 0.000000e+00 1362
21 TraesCS7A01G302400 chr3B 94.907 864 42 2 2 864 107974748 107973886 0.000000e+00 1351
22 TraesCS7A01G302400 chr3B 86.826 167 18 3 6150 6316 245935461 245935623 4.000000e-42 183
23 TraesCS7A01G302400 chr2D 88.344 163 15 2 6150 6312 617101061 617101219 6.650000e-45 193
24 TraesCS7A01G302400 chr2D 88.608 158 13 4 6150 6306 564584724 564584877 3.090000e-43 187
25 TraesCS7A01G302400 chr2D 87.195 164 17 2 6150 6313 122864263 122864104 4.000000e-42 183
26 TraesCS7A01G302400 chr5B 89.172 157 11 3 6150 6306 208523301 208523451 2.390000e-44 191


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G302400 chr7A 424309140 424315640 6500 False 12006.000000 12006 100.000000 1 6501 1 chr7A.!!$F1 6500
1 TraesCS7A01G302400 chr7A 602760485 602761348 863 False 1458.000000 1458 97.106000 1 864 1 chr7A.!!$F2 863
2 TraesCS7A01G302400 chr7D 376553444 376558912 5468 False 2838.333333 7749 93.092667 865 6500 3 chr7D.!!$F1 5635
3 TraesCS7A01G302400 chr7B 371727308 371732369 5061 False 1887.500000 3434 93.598250 865 5800 4 chr7B.!!$F1 4935
4 TraesCS7A01G302400 chr1B 422462304 422463167 863 False 1535.000000 1535 98.727000 1 864 1 chr1B.!!$F1 863
5 TraesCS7A01G302400 chr4B 22219051 22219914 863 False 1524.000000 1524 98.495000 1 864 1 chr4B.!!$F1 863
6 TraesCS7A01G302400 chr4A 626079602 626080463 861 True 1509.000000 1509 98.260000 1 862 1 chr4A.!!$R1 861
7 TraesCS7A01G302400 chr3A 713866619 713867478 859 False 1399.000000 1399 95.949000 1 864 1 chr3A.!!$F3 863
8 TraesCS7A01G302400 chr3A 486108233 486109093 860 False 1395.000000 1395 95.838000 1 865 1 chr3A.!!$F2 864
9 TraesCS7A01G302400 chr3A 154935149 154936012 863 False 1378.000000 1378 95.486000 2 864 1 chr3A.!!$F1 862
10 TraesCS7A01G302400 chr2A 461400638 461401500 862 True 1362.000000 1362 95.139000 2 864 1 chr2A.!!$R1 862
11 TraesCS7A01G302400 chr3B 107973886 107974748 862 True 1351.000000 1351 94.907000 2 864 1 chr3B.!!$R1 862

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
852 854 1.135068 TTCGGCAGGGGGTCCTTTTA 61.135 55.000 0.0 0.00 42.67 1.52 F
1331 1398 0.104671 TGCTGCCTTTGCCTGTTTTC 59.895 50.000 0.0 0.00 36.33 2.29 F
1332 1399 0.601046 GCTGCCTTTGCCTGTTTTCC 60.601 55.000 0.0 0.00 36.33 3.13 F
1333 1400 1.043022 CTGCCTTTGCCTGTTTTCCT 58.957 50.000 0.0 0.00 36.33 3.36 F
3586 3700 1.411246 ACCAAGTTGTAGTCGACAGCA 59.589 47.619 19.5 12.95 41.51 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2575 2684 0.029834 GATCAGAATTGGCGCGCAAT 59.970 50.0 34.42 25.23 0.00 3.56 R
3292 3404 0.250038 TGCAAGTGACAGAGAGCACC 60.250 55.0 0.00 0.00 35.67 5.01 R
3586 3700 5.044919 TCACCATACCTGGAGACATTGAATT 60.045 40.0 0.00 0.00 46.37 2.17 R
3593 3707 7.872061 ATTATATTCACCATACCTGGAGACA 57.128 36.0 0.00 0.00 46.37 3.41 R
5639 5760 0.308684 TTGCGCAAAGTGCTTCTCAG 59.691 50.0 22.78 0.00 42.25 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
163 164 9.529823 TCCTTCTGTGTATTCTTCTAGACTTAA 57.470 33.333 0.00 0.00 0.00 1.85
494 495 2.860293 CGCCGTTGAAATCAGCGT 59.140 55.556 16.50 0.00 46.72 5.07
852 854 1.135068 TTCGGCAGGGGGTCCTTTTA 61.135 55.000 0.00 0.00 42.67 1.52
1172 1174 1.400142 CGTGCAAGGAACAACAACTGA 59.600 47.619 0.00 0.00 0.00 3.41
1183 1223 4.799564 ACAACAACTGATCTCTCTCTCC 57.200 45.455 0.00 0.00 0.00 3.71
1189 1229 2.443255 ACTGATCTCTCTCTCCCTCTCC 59.557 54.545 0.00 0.00 0.00 3.71
1191 1231 2.065799 GATCTCTCTCTCCCTCTCCCT 58.934 57.143 0.00 0.00 0.00 4.20
1232 1272 0.443869 CGTCTTCGGGCATGTTCTTG 59.556 55.000 0.00 0.00 0.00 3.02
1244 1284 4.504097 GGCATGTTCTTGTGTTCTTGAAAC 59.496 41.667 0.00 0.00 0.00 2.78
1279 1329 4.568152 AAGGTGTCCTTTTGAATCGTTG 57.432 40.909 0.00 0.00 41.69 4.10
1283 1333 4.201970 GGTGTCCTTTTGAATCGTTGTTGA 60.202 41.667 0.00 0.00 0.00 3.18
1316 1366 2.350772 GGAACTCGTGTTGGAAATGCTG 60.351 50.000 7.72 0.00 36.39 4.41
1321 1388 1.269726 CGTGTTGGAAATGCTGCCTTT 60.270 47.619 2.47 2.47 0.00 3.11
1322 1389 2.137523 GTGTTGGAAATGCTGCCTTTG 58.862 47.619 7.64 0.00 0.00 2.77
1323 1390 1.150827 GTTGGAAATGCTGCCTTTGC 58.849 50.000 13.36 13.36 38.26 3.68
1326 1393 0.390735 GGAAATGCTGCCTTTGCCTG 60.391 55.000 7.64 0.00 36.33 4.85
1327 1394 0.319405 GAAATGCTGCCTTTGCCTGT 59.681 50.000 7.64 0.00 36.33 4.00
1328 1395 0.760572 AAATGCTGCCTTTGCCTGTT 59.239 45.000 2.02 0.00 36.33 3.16
1329 1396 0.760572 AATGCTGCCTTTGCCTGTTT 59.239 45.000 0.00 0.00 36.33 2.83
1330 1397 0.760572 ATGCTGCCTTTGCCTGTTTT 59.239 45.000 0.00 0.00 36.33 2.43
1331 1398 0.104671 TGCTGCCTTTGCCTGTTTTC 59.895 50.000 0.00 0.00 36.33 2.29
1332 1399 0.601046 GCTGCCTTTGCCTGTTTTCC 60.601 55.000 0.00 0.00 36.33 3.13
1333 1400 1.043022 CTGCCTTTGCCTGTTTTCCT 58.957 50.000 0.00 0.00 36.33 3.36
1334 1401 1.413812 CTGCCTTTGCCTGTTTTCCTT 59.586 47.619 0.00 0.00 36.33 3.36
1335 1402 1.412343 TGCCTTTGCCTGTTTTCCTTC 59.588 47.619 0.00 0.00 36.33 3.46
1336 1403 1.688735 GCCTTTGCCTGTTTTCCTTCT 59.311 47.619 0.00 0.00 0.00 2.85
1337 1404 2.288457 GCCTTTGCCTGTTTTCCTTCTC 60.288 50.000 0.00 0.00 0.00 2.87
1338 1405 2.297315 CCTTTGCCTGTTTTCCTTCTCC 59.703 50.000 0.00 0.00 0.00 3.71
1339 1406 3.225940 CTTTGCCTGTTTTCCTTCTCCT 58.774 45.455 0.00 0.00 0.00 3.69
1340 1407 3.312736 TTGCCTGTTTTCCTTCTCCTT 57.687 42.857 0.00 0.00 0.00 3.36
1341 1408 2.863809 TGCCTGTTTTCCTTCTCCTTC 58.136 47.619 0.00 0.00 0.00 3.46
1562 1632 3.787785 TCGAAATAAATCTGTAGCGGCA 58.212 40.909 1.45 0.00 0.00 5.69
1598 1668 4.219725 TGTCCTAAAAATAGCAAGTTGCCC 59.780 41.667 24.02 0.00 46.52 5.36
1602 1672 6.321181 TCCTAAAAATAGCAAGTTGCCCTATG 59.679 38.462 24.02 7.33 46.52 2.23
1685 1755 7.113658 TCTCGAGGTTCTAGCATTAATTTCT 57.886 36.000 13.56 0.00 0.00 2.52
1838 1917 5.335269 CGGTGTGGATGCAAAATTACAAGTA 60.335 40.000 0.00 0.00 0.00 2.24
1839 1918 6.092748 GGTGTGGATGCAAAATTACAAGTAG 58.907 40.000 0.00 0.00 0.00 2.57
1840 1919 6.092748 GTGTGGATGCAAAATTACAAGTAGG 58.907 40.000 0.00 0.00 0.00 3.18
1897 1976 3.820425 CAGTTCCCTGGGCCACTA 58.180 61.111 8.22 0.00 34.90 2.74
2033 2112 2.159531 TCTGCATCGCAATTCTTTTCCG 60.160 45.455 0.00 0.00 38.41 4.30
2292 2401 4.797471 TGTGCACATCACTATGCTTTTTC 58.203 39.130 17.42 0.00 45.81 2.29
2341 2450 6.203723 GTGGACAATTCTCTGTATCATTAGCC 59.796 42.308 0.00 0.00 0.00 3.93
2345 2454 6.713903 ACAATTCTCTGTATCATTAGCCCATG 59.286 38.462 0.00 0.00 0.00 3.66
2427 2536 7.472543 CCCTTTCTTTCAATACGTATTTCCTG 58.527 38.462 18.06 8.25 0.00 3.86
2428 2537 6.967199 CCTTTCTTTCAATACGTATTTCCTGC 59.033 38.462 18.06 0.00 0.00 4.85
2434 2543 5.670485 TCAATACGTATTTCCTGCACATCT 58.330 37.500 18.06 0.00 0.00 2.90
2440 2549 6.273825 ACGTATTTCCTGCACATCTAGTAAG 58.726 40.000 0.00 0.00 0.00 2.34
2476 2585 3.907894 AACAAACAACACGTCAACACT 57.092 38.095 0.00 0.00 0.00 3.55
2561 2670 5.638657 TCTGCACATTCCAACATTTAAATGC 59.361 36.000 24.82 11.26 40.04 3.56
2575 2684 2.346766 AAATGCGCATATGGAGGTCA 57.653 45.000 25.61 0.00 0.00 4.02
2743 2853 2.038557 GACCTACCAGTTCCAGCTCAAA 59.961 50.000 0.00 0.00 0.00 2.69
2776 2886 5.414789 GAAGCTTCTTCTACTTCCCTTCT 57.585 43.478 19.44 0.00 34.95 2.85
2884 2994 1.812571 GGCGACATCACCTTGTTCATT 59.187 47.619 0.00 0.00 0.00 2.57
3041 3153 1.417890 AGTTCTTGACCCCTGACACTG 59.582 52.381 0.00 0.00 0.00 3.66
3097 3209 9.909644 ACCATATAGAGTTGATACGTATTGTTC 57.090 33.333 9.92 5.96 0.00 3.18
3114 3226 7.867909 CGTATTGTTCTTCTGGCAAGATATAGA 59.132 37.037 0.00 0.00 30.72 1.98
3292 3404 2.360165 ACTTTGCCTTTGTGCTTGAGAG 59.640 45.455 0.00 0.00 0.00 3.20
3514 3628 3.420839 GCACTTGTATATGTGCCCAAC 57.579 47.619 16.61 0.00 46.52 3.77
3586 3700 1.411246 ACCAAGTTGTAGTCGACAGCA 59.589 47.619 19.50 12.95 41.51 4.41
3593 3707 4.997395 AGTTGTAGTCGACAGCAATTCAAT 59.003 37.500 19.50 5.05 41.51 2.57
3606 3720 4.885907 AGCAATTCAATGTCTCCAGGTATG 59.114 41.667 0.00 0.00 0.00 2.39
3766 3880 2.548057 TGACTTGGAAATTGCACGAGTC 59.452 45.455 10.97 10.97 43.03 3.36
4103 4217 2.299867 GACCATGGACCAAAATGCAAGT 59.700 45.455 21.47 0.00 0.00 3.16
4288 4402 1.561542 CCAGGCAAGGTCTATCAGGTT 59.438 52.381 0.00 0.00 0.00 3.50
4512 4626 3.003689 CGCAGACCTTTGTGTTGAAGAAT 59.996 43.478 0.00 0.00 0.00 2.40
4518 4632 5.192927 ACCTTTGTGTTGAAGAATGAGTCA 58.807 37.500 0.00 0.00 0.00 3.41
4547 4661 0.320073 ATTGACGGGAAGCGTCGAAA 60.320 50.000 0.00 0.00 39.02 3.46
4670 4784 2.713967 GCAATGCGCCACCAAGGAT 61.714 57.895 4.18 0.00 41.22 3.24
4825 4939 7.620880 TGTAGGATACACTTTGCATAGTCTTT 58.379 34.615 6.86 0.00 46.14 2.52
4871 4985 1.250328 ATGGGCACTGTCATGTTGTG 58.750 50.000 9.78 9.78 35.08 3.33
5047 5168 7.943079 TCATGGTCATTCTGATACACAATTT 57.057 32.000 0.00 0.00 0.00 1.82
5050 5171 8.464404 CATGGTCATTCTGATACACAATTTTCT 58.536 33.333 0.00 0.00 0.00 2.52
5051 5172 8.044060 TGGTCATTCTGATACACAATTTTCTC 57.956 34.615 0.00 0.00 0.00 2.87
5052 5173 7.884877 TGGTCATTCTGATACACAATTTTCTCT 59.115 33.333 0.00 0.00 0.00 3.10
5053 5174 8.394121 GGTCATTCTGATACACAATTTTCTCTC 58.606 37.037 0.00 0.00 0.00 3.20
5054 5175 9.160496 GTCATTCTGATACACAATTTTCTCTCT 57.840 33.333 0.00 0.00 0.00 3.10
5099 5220 2.698855 ATCAACATCAGGTCTTCCCG 57.301 50.000 0.00 0.00 38.74 5.14
5336 5457 2.868964 TTATCCTCTACTGCACCCCT 57.131 50.000 0.00 0.00 0.00 4.79
5482 5603 1.138069 ACCGTGTCACTGATTGTCACA 59.862 47.619 0.93 0.00 42.48 3.58
5511 5632 9.107177 TGTGATTTGCAGTTAAATTTGACAAAT 57.893 25.926 14.74 7.62 35.63 2.32
5515 5636 7.551035 TTGCAGTTAAATTTGACAAATTGCT 57.449 28.000 23.37 18.31 40.05 3.91
5783 6055 8.078596 GCTAACCTATGAGCAATTGGAATTTAG 58.921 37.037 7.72 5.95 38.62 1.85
5794 6066 9.428097 AGCAATTGGAATTTAGACTGAATTTTC 57.572 29.630 7.72 4.12 0.00 2.29
5873 6145 7.747799 GCAATTTCATTGATGGATATACTCGTG 59.252 37.037 0.49 0.00 42.83 4.35
5882 6154 5.607939 TGGATATACTCGTGGACATGTTT 57.392 39.130 0.00 0.00 0.00 2.83
5884 6156 6.046593 TGGATATACTCGTGGACATGTTTTC 58.953 40.000 0.00 0.00 0.00 2.29
5885 6157 6.046593 GGATATACTCGTGGACATGTTTTCA 58.953 40.000 0.00 0.00 0.00 2.69
5886 6158 6.706270 GGATATACTCGTGGACATGTTTTCAT 59.294 38.462 0.00 0.00 41.78 2.57
5887 6159 7.095607 GGATATACTCGTGGACATGTTTTCATC 60.096 40.741 0.00 0.00 38.64 2.92
5888 6160 2.736721 ACTCGTGGACATGTTTTCATCG 59.263 45.455 0.00 6.61 38.64 3.84
5889 6161 2.993220 CTCGTGGACATGTTTTCATCGA 59.007 45.455 0.00 9.94 38.64 3.59
5890 6162 3.595173 TCGTGGACATGTTTTCATCGAT 58.405 40.909 0.00 0.00 38.64 3.59
5891 6163 3.616821 TCGTGGACATGTTTTCATCGATC 59.383 43.478 0.00 0.00 38.64 3.69
5892 6164 3.370672 CGTGGACATGTTTTCATCGATCA 59.629 43.478 0.00 0.00 38.64 2.92
5893 6165 4.493057 CGTGGACATGTTTTCATCGATCAG 60.493 45.833 0.00 0.00 38.64 2.90
5894 6166 4.393062 GTGGACATGTTTTCATCGATCAGT 59.607 41.667 0.00 0.00 38.64 3.41
5895 6167 5.003160 TGGACATGTTTTCATCGATCAGTT 58.997 37.500 0.00 0.00 38.64 3.16
5896 6168 5.106594 TGGACATGTTTTCATCGATCAGTTG 60.107 40.000 0.00 0.00 38.64 3.16
5897 6169 5.106555 GGACATGTTTTCATCGATCAGTTGT 60.107 40.000 0.00 0.00 38.64 3.32
5898 6170 6.317789 ACATGTTTTCATCGATCAGTTGTT 57.682 33.333 0.00 0.00 38.64 2.83
5899 6171 7.360861 GGACATGTTTTCATCGATCAGTTGTTA 60.361 37.037 0.00 0.00 38.64 2.41
5909 6181 9.087424 TCATCGATCAGTTGTTAAGTAGATTTG 57.913 33.333 0.00 0.00 0.00 2.32
5927 6199 4.810191 TTTGGCACTTGTAAACCTGTTT 57.190 36.364 0.45 0.45 36.63 2.83
5928 6200 3.791973 TGGCACTTGTAAACCTGTTTG 57.208 42.857 5.55 0.00 34.23 2.93
5936 6208 7.542824 GCACTTGTAAACCTGTTTGTTAAGAAA 59.457 33.333 15.75 0.00 34.23 2.52
6000 6278 6.206829 ACCTTGTTTATTCCTGTCAAAGTAGC 59.793 38.462 0.00 0.00 0.00 3.58
6013 6291 3.074412 CAAAGTAGCGGACAGTGGAAAT 58.926 45.455 0.00 0.00 0.00 2.17
6014 6292 2.386661 AGTAGCGGACAGTGGAAATG 57.613 50.000 0.00 0.00 38.30 2.32
6023 6301 1.901591 CAGTGGAAATGTGCTGGACT 58.098 50.000 0.00 0.00 0.00 3.85
6024 6302 1.808945 CAGTGGAAATGTGCTGGACTC 59.191 52.381 0.00 0.00 0.00 3.36
6025 6303 1.701847 AGTGGAAATGTGCTGGACTCT 59.298 47.619 0.00 0.00 0.00 3.24
6026 6304 2.107204 AGTGGAAATGTGCTGGACTCTT 59.893 45.455 0.00 0.00 0.00 2.85
6027 6305 2.227388 GTGGAAATGTGCTGGACTCTTG 59.773 50.000 0.00 0.00 0.00 3.02
6028 6306 1.200948 GGAAATGTGCTGGACTCTTGC 59.799 52.381 0.00 0.00 0.00 4.01
6029 6307 1.200948 GAAATGTGCTGGACTCTTGCC 59.799 52.381 0.00 0.00 0.00 4.52
6030 6308 0.403271 AATGTGCTGGACTCTTGCCT 59.597 50.000 0.00 0.00 0.00 4.75
6031 6309 0.403271 ATGTGCTGGACTCTTGCCTT 59.597 50.000 0.00 0.00 0.00 4.35
6032 6310 1.055849 TGTGCTGGACTCTTGCCTTA 58.944 50.000 0.00 0.00 0.00 2.69
6033 6311 1.630369 TGTGCTGGACTCTTGCCTTAT 59.370 47.619 0.00 0.00 0.00 1.73
6034 6312 2.284190 GTGCTGGACTCTTGCCTTATC 58.716 52.381 0.00 0.00 0.00 1.75
6035 6313 1.210478 TGCTGGACTCTTGCCTTATCC 59.790 52.381 0.00 0.00 0.00 2.59
6036 6314 1.488393 GCTGGACTCTTGCCTTATCCT 59.512 52.381 0.00 0.00 0.00 3.24
6037 6315 2.092699 GCTGGACTCTTGCCTTATCCTT 60.093 50.000 0.00 0.00 0.00 3.36
6038 6316 3.539604 CTGGACTCTTGCCTTATCCTTG 58.460 50.000 0.00 0.00 0.00 3.61
6039 6317 2.293170 GGACTCTTGCCTTATCCTTGC 58.707 52.381 0.00 0.00 0.00 4.01
6040 6318 2.293170 GACTCTTGCCTTATCCTTGCC 58.707 52.381 0.00 0.00 0.00 4.52
6041 6319 1.064389 ACTCTTGCCTTATCCTTGCCC 60.064 52.381 0.00 0.00 0.00 5.36
6042 6320 1.213926 CTCTTGCCTTATCCTTGCCCT 59.786 52.381 0.00 0.00 0.00 5.19
6043 6321 1.064463 TCTTGCCTTATCCTTGCCCTG 60.064 52.381 0.00 0.00 0.00 4.45
6044 6322 0.033208 TTGCCTTATCCTTGCCCTGG 60.033 55.000 0.00 0.00 0.00 4.45
6045 6323 0.918799 TGCCTTATCCTTGCCCTGGA 60.919 55.000 0.00 0.00 38.06 3.86
6046 6324 0.480252 GCCTTATCCTTGCCCTGGAT 59.520 55.000 0.00 7.28 45.37 3.41
6047 6325 1.705186 GCCTTATCCTTGCCCTGGATA 59.295 52.381 0.00 5.63 43.41 2.59
6049 6327 3.756117 CCTTATCCTTGCCCTGGATAAC 58.244 50.000 14.33 0.00 45.96 1.89
6050 6328 3.498661 CCTTATCCTTGCCCTGGATAACC 60.499 52.174 14.33 0.00 45.96 2.85
6051 6329 1.912862 ATCCTTGCCCTGGATAACCT 58.087 50.000 0.00 0.00 42.03 3.50
6052 6330 0.918983 TCCTTGCCCTGGATAACCTG 59.081 55.000 0.00 0.00 37.04 4.00
6053 6331 0.753111 CCTTGCCCTGGATAACCTGC 60.753 60.000 0.00 0.00 37.04 4.85
6054 6332 0.753111 CTTGCCCTGGATAACCTGCC 60.753 60.000 0.00 0.00 37.04 4.85
6055 6333 1.214305 TTGCCCTGGATAACCTGCCT 61.214 55.000 0.00 0.00 37.04 4.75
6056 6334 1.149401 GCCCTGGATAACCTGCCTC 59.851 63.158 0.00 0.00 37.04 4.70
6057 6335 1.839894 CCCTGGATAACCTGCCTCC 59.160 63.158 0.00 0.00 37.04 4.30
6058 6336 0.988145 CCCTGGATAACCTGCCTCCA 60.988 60.000 0.00 0.00 37.50 3.86
6059 6337 1.143813 CCTGGATAACCTGCCTCCAT 58.856 55.000 0.00 0.00 38.36 3.41
6060 6338 1.202855 CCTGGATAACCTGCCTCCATG 60.203 57.143 0.00 0.00 38.36 3.66
6061 6339 1.770658 CTGGATAACCTGCCTCCATGA 59.229 52.381 0.00 0.00 38.36 3.07
6062 6340 2.173356 CTGGATAACCTGCCTCCATGAA 59.827 50.000 0.00 0.00 38.36 2.57
6063 6341 2.092429 TGGATAACCTGCCTCCATGAAC 60.092 50.000 0.00 0.00 34.17 3.18
6064 6342 2.173569 GGATAACCTGCCTCCATGAACT 59.826 50.000 0.00 0.00 0.00 3.01
6065 6343 3.471680 GATAACCTGCCTCCATGAACTC 58.528 50.000 0.00 0.00 0.00 3.01
6066 6344 1.067295 AACCTGCCTCCATGAACTCA 58.933 50.000 0.00 0.00 0.00 3.41
6067 6345 1.293062 ACCTGCCTCCATGAACTCAT 58.707 50.000 0.00 0.00 36.96 2.90
6068 6346 1.211457 ACCTGCCTCCATGAACTCATC 59.789 52.381 0.00 0.00 33.61 2.92
6069 6347 1.211212 CCTGCCTCCATGAACTCATCA 59.789 52.381 0.00 0.00 43.67 3.07
6070 6348 2.286872 CTGCCTCCATGAACTCATCAC 58.713 52.381 0.00 0.00 41.93 3.06
6071 6349 1.293924 GCCTCCATGAACTCATCACG 58.706 55.000 0.00 0.00 41.93 4.35
6072 6350 1.293924 CCTCCATGAACTCATCACGC 58.706 55.000 0.00 0.00 41.93 5.34
6073 6351 1.293924 CTCCATGAACTCATCACGCC 58.706 55.000 0.00 0.00 41.93 5.68
6074 6352 0.904649 TCCATGAACTCATCACGCCT 59.095 50.000 0.00 0.00 41.93 5.52
6075 6353 1.012086 CCATGAACTCATCACGCCTG 58.988 55.000 0.00 0.00 41.93 4.85
6076 6354 1.676916 CCATGAACTCATCACGCCTGT 60.677 52.381 0.00 0.00 41.93 4.00
6077 6355 1.662629 CATGAACTCATCACGCCTGTC 59.337 52.381 0.00 0.00 41.93 3.51
6078 6356 0.037326 TGAACTCATCACGCCTGTCC 60.037 55.000 0.00 0.00 31.50 4.02
6079 6357 0.037326 GAACTCATCACGCCTGTCCA 60.037 55.000 0.00 0.00 0.00 4.02
6080 6358 0.320771 AACTCATCACGCCTGTCCAC 60.321 55.000 0.00 0.00 0.00 4.02
6081 6359 1.293179 CTCATCACGCCTGTCCACA 59.707 57.895 0.00 0.00 0.00 4.17
6082 6360 0.320683 CTCATCACGCCTGTCCACAA 60.321 55.000 0.00 0.00 0.00 3.33
6083 6361 0.320683 TCATCACGCCTGTCCACAAG 60.321 55.000 0.00 0.00 0.00 3.16
6084 6362 1.672356 ATCACGCCTGTCCACAAGC 60.672 57.895 0.00 0.00 0.00 4.01
6085 6363 2.395988 ATCACGCCTGTCCACAAGCA 62.396 55.000 1.41 0.00 33.06 3.91
6086 6364 1.968017 CACGCCTGTCCACAAGCAT 60.968 57.895 1.41 0.00 33.06 3.79
6087 6365 1.672356 ACGCCTGTCCACAAGCATC 60.672 57.895 1.41 0.00 33.06 3.91
6088 6366 1.672030 CGCCTGTCCACAAGCATCA 60.672 57.895 1.41 0.00 33.06 3.07
6089 6367 1.642037 CGCCTGTCCACAAGCATCAG 61.642 60.000 1.41 0.00 33.06 2.90
6090 6368 0.321919 GCCTGTCCACAAGCATCAGA 60.322 55.000 0.00 0.00 33.67 3.27
6091 6369 1.681166 GCCTGTCCACAAGCATCAGAT 60.681 52.381 0.00 0.00 33.67 2.90
6092 6370 2.719739 CCTGTCCACAAGCATCAGATT 58.280 47.619 0.00 0.00 0.00 2.40
6093 6371 3.087031 CCTGTCCACAAGCATCAGATTT 58.913 45.455 0.00 0.00 0.00 2.17
6094 6372 3.119602 CCTGTCCACAAGCATCAGATTTG 60.120 47.826 0.00 0.00 0.00 2.32
6095 6373 2.821378 TGTCCACAAGCATCAGATTTGG 59.179 45.455 0.86 0.00 0.00 3.28
6096 6374 1.820519 TCCACAAGCATCAGATTTGGC 59.179 47.619 0.86 0.00 0.00 4.52
6097 6375 1.546923 CCACAAGCATCAGATTTGGCA 59.453 47.619 0.86 0.00 0.00 4.92
6098 6376 2.028839 CCACAAGCATCAGATTTGGCAA 60.029 45.455 0.00 0.00 0.00 4.52
6099 6377 3.250744 CACAAGCATCAGATTTGGCAAG 58.749 45.455 0.00 0.00 0.00 4.01
6100 6378 3.057104 CACAAGCATCAGATTTGGCAAGA 60.057 43.478 0.00 0.00 0.00 3.02
6101 6379 3.057033 ACAAGCATCAGATTTGGCAAGAC 60.057 43.478 0.00 0.00 0.00 3.01
6102 6380 2.799017 AGCATCAGATTTGGCAAGACA 58.201 42.857 0.00 0.00 0.00 3.41
6103 6381 2.490903 AGCATCAGATTTGGCAAGACAC 59.509 45.455 0.00 0.00 0.00 3.67
6104 6382 2.730090 GCATCAGATTTGGCAAGACACG 60.730 50.000 0.00 0.00 0.00 4.49
6105 6383 2.542020 TCAGATTTGGCAAGACACGA 57.458 45.000 0.00 0.00 0.00 4.35
6106 6384 2.844946 TCAGATTTGGCAAGACACGAA 58.155 42.857 0.00 0.00 0.00 3.85
6107 6385 3.411446 TCAGATTTGGCAAGACACGAAT 58.589 40.909 0.00 0.00 0.00 3.34
6108 6386 3.436704 TCAGATTTGGCAAGACACGAATC 59.563 43.478 0.00 0.00 37.63 2.52
6109 6387 2.749621 AGATTTGGCAAGACACGAATCC 59.250 45.455 0.00 0.00 37.94 3.01
6110 6388 2.270352 TTTGGCAAGACACGAATCCT 57.730 45.000 0.00 0.00 0.00 3.24
6111 6389 1.808411 TTGGCAAGACACGAATCCTC 58.192 50.000 0.00 0.00 0.00 3.71
6112 6390 0.684535 TGGCAAGACACGAATCCTCA 59.315 50.000 0.00 0.00 0.00 3.86
6113 6391 1.338105 TGGCAAGACACGAATCCTCAG 60.338 52.381 0.00 0.00 0.00 3.35
6114 6392 0.723981 GCAAGACACGAATCCTCAGC 59.276 55.000 0.00 0.00 0.00 4.26
6115 6393 1.674221 GCAAGACACGAATCCTCAGCT 60.674 52.381 0.00 0.00 0.00 4.24
6116 6394 1.998315 CAAGACACGAATCCTCAGCTG 59.002 52.381 7.63 7.63 0.00 4.24
6117 6395 1.261480 AGACACGAATCCTCAGCTGT 58.739 50.000 14.67 0.00 0.00 4.40
6118 6396 1.067283 AGACACGAATCCTCAGCTGTG 60.067 52.381 14.67 11.58 0.00 3.66
6119 6397 0.681733 ACACGAATCCTCAGCTGTGT 59.318 50.000 14.67 5.00 35.86 3.72
6120 6398 1.337260 ACACGAATCCTCAGCTGTGTC 60.337 52.381 14.67 4.29 35.84 3.67
6121 6399 0.969149 ACGAATCCTCAGCTGTGTCA 59.031 50.000 14.67 0.14 0.00 3.58
6122 6400 1.344438 ACGAATCCTCAGCTGTGTCAA 59.656 47.619 14.67 0.00 0.00 3.18
6123 6401 1.998315 CGAATCCTCAGCTGTGTCAAG 59.002 52.381 14.67 2.73 0.00 3.02
6124 6402 1.736681 GAATCCTCAGCTGTGTCAAGC 59.263 52.381 14.67 0.00 43.88 4.01
6130 6408 4.343581 GCTGTGTCAAGCTGTCGA 57.656 55.556 0.00 0.00 40.20 4.20
6131 6409 2.605094 GCTGTGTCAAGCTGTCGAA 58.395 52.632 0.00 0.00 40.20 3.71
6132 6410 0.233332 GCTGTGTCAAGCTGTCGAAC 59.767 55.000 0.00 0.00 40.20 3.95
6133 6411 1.858091 CTGTGTCAAGCTGTCGAACT 58.142 50.000 0.00 0.00 0.00 3.01
6134 6412 1.524355 CTGTGTCAAGCTGTCGAACTG 59.476 52.381 0.00 0.00 0.00 3.16
6135 6413 1.134818 TGTGTCAAGCTGTCGAACTGT 60.135 47.619 0.00 0.00 0.00 3.55
6136 6414 1.523095 GTGTCAAGCTGTCGAACTGTC 59.477 52.381 0.00 0.00 0.00 3.51
6137 6415 1.140816 GTCAAGCTGTCGAACTGTCC 58.859 55.000 0.00 0.00 0.00 4.02
6138 6416 1.040646 TCAAGCTGTCGAACTGTCCT 58.959 50.000 0.00 0.00 0.00 3.85
6139 6417 2.030185 GTCAAGCTGTCGAACTGTCCTA 60.030 50.000 0.00 0.00 0.00 2.94
6140 6418 2.826128 TCAAGCTGTCGAACTGTCCTAT 59.174 45.455 0.00 0.00 0.00 2.57
6141 6419 4.014406 TCAAGCTGTCGAACTGTCCTATA 58.986 43.478 0.00 0.00 0.00 1.31
6142 6420 4.461431 TCAAGCTGTCGAACTGTCCTATAA 59.539 41.667 0.00 0.00 0.00 0.98
6155 6433 8.783660 AACTGTCCTATAAGATCAATACTCCA 57.216 34.615 0.00 0.00 0.00 3.86
6158 6436 8.367660 TGTCCTATAAGATCAATACTCCATCC 57.632 38.462 0.00 0.00 0.00 3.51
6179 6457 9.923143 CCATCCGTTCACAAATAGTATAAGATA 57.077 33.333 0.00 0.00 0.00 1.98
6241 6519 5.991328 TCAGTGTGTTTCTTCACTCATTC 57.009 39.130 0.00 0.00 42.05 2.67
6242 6520 5.674525 TCAGTGTGTTTCTTCACTCATTCT 58.325 37.500 0.00 0.00 42.05 2.40
6243 6521 6.816136 TCAGTGTGTTTCTTCACTCATTCTA 58.184 36.000 0.00 0.00 42.05 2.10
6244 6522 6.925718 TCAGTGTGTTTCTTCACTCATTCTAG 59.074 38.462 0.00 0.00 42.05 2.43
6245 6523 6.703607 CAGTGTGTTTCTTCACTCATTCTAGT 59.296 38.462 0.00 0.00 42.05 2.57
6246 6524 6.926272 AGTGTGTTTCTTCACTCATTCTAGTC 59.074 38.462 0.00 0.00 40.28 2.59
6247 6525 6.146347 GTGTGTTTCTTCACTCATTCTAGTCC 59.854 42.308 0.00 0.00 38.90 3.85
6248 6526 5.346281 GTGTTTCTTCACTCATTCTAGTCCG 59.654 44.000 0.00 0.00 35.68 4.79
6249 6527 5.010719 TGTTTCTTCACTCATTCTAGTCCGT 59.989 40.000 0.00 0.00 0.00 4.69
6251 6529 7.093902 TGTTTCTTCACTCATTCTAGTCCGTAT 60.094 37.037 0.00 0.00 0.00 3.06
6252 6530 6.378710 TCTTCACTCATTCTAGTCCGTATG 57.621 41.667 0.00 0.00 0.00 2.39
6253 6531 5.886474 TCTTCACTCATTCTAGTCCGTATGT 59.114 40.000 0.00 0.00 0.00 2.29
6254 6532 6.377429 TCTTCACTCATTCTAGTCCGTATGTT 59.623 38.462 0.00 0.00 0.00 2.71
6255 6533 7.555195 TCTTCACTCATTCTAGTCCGTATGTTA 59.445 37.037 0.00 0.00 0.00 2.41
6256 6534 7.260558 TCACTCATTCTAGTCCGTATGTTAG 57.739 40.000 0.00 0.00 0.00 2.34
6257 6535 6.827251 TCACTCATTCTAGTCCGTATGTTAGT 59.173 38.462 0.00 0.00 0.00 2.24
6258 6536 7.012138 TCACTCATTCTAGTCCGTATGTTAGTC 59.988 40.741 0.00 0.00 0.00 2.59
6259 6537 6.262720 ACTCATTCTAGTCCGTATGTTAGTCC 59.737 42.308 0.00 0.00 0.00 3.85
6260 6538 6.124340 TCATTCTAGTCCGTATGTTAGTCCA 58.876 40.000 0.00 0.00 0.00 4.02
6261 6539 6.776116 TCATTCTAGTCCGTATGTTAGTCCAT 59.224 38.462 0.00 0.00 0.00 3.41
6262 6540 7.940688 TCATTCTAGTCCGTATGTTAGTCCATA 59.059 37.037 0.00 0.00 0.00 2.74
6263 6541 7.502120 TTCTAGTCCGTATGTTAGTCCATAC 57.498 40.000 0.00 0.00 42.37 2.39
6264 6542 6.835174 TCTAGTCCGTATGTTAGTCCATACT 58.165 40.000 9.02 0.00 43.20 2.12
6265 6543 5.769484 AGTCCGTATGTTAGTCCATACTG 57.231 43.478 9.02 3.86 43.20 2.74
6266 6544 5.443283 AGTCCGTATGTTAGTCCATACTGA 58.557 41.667 9.02 5.80 43.20 3.41
6267 6545 5.889853 AGTCCGTATGTTAGTCCATACTGAA 59.110 40.000 9.02 0.00 43.20 3.02
6268 6546 6.379133 AGTCCGTATGTTAGTCCATACTGAAA 59.621 38.462 9.02 0.00 43.20 2.69
6269 6547 7.069578 AGTCCGTATGTTAGTCCATACTGAAAT 59.930 37.037 9.02 0.33 43.20 2.17
6270 6548 8.355169 GTCCGTATGTTAGTCCATACTGAAATA 58.645 37.037 9.02 0.00 43.20 1.40
6271 6549 9.085645 TCCGTATGTTAGTCCATACTGAAATAT 57.914 33.333 9.02 0.00 43.20 1.28
6272 6550 9.355215 CCGTATGTTAGTCCATACTGAAATATC 57.645 37.037 9.02 0.00 43.20 1.63
6273 6551 9.355215 CGTATGTTAGTCCATACTGAAATATCC 57.645 37.037 9.02 0.00 43.20 2.59
6277 6555 9.967451 TGTTAGTCCATACTGAAATATCCAAAA 57.033 29.630 0.00 0.00 36.36 2.44
6279 6557 9.967451 TTAGTCCATACTGAAATATCCAAAACA 57.033 29.630 0.00 0.00 36.36 2.83
6281 6559 9.125026 AGTCCATACTGAAATATCCAAAACATC 57.875 33.333 0.00 0.00 33.57 3.06
6282 6560 9.125026 GTCCATACTGAAATATCCAAAACATCT 57.875 33.333 0.00 0.00 0.00 2.90
6283 6561 9.699410 TCCATACTGAAATATCCAAAACATCTT 57.301 29.630 0.00 0.00 0.00 2.40
6309 6587 3.159213 TGTGAACGGAGGGAGTACTTA 57.841 47.619 0.00 0.00 0.00 2.24
6330 6608 8.443953 ACTTATTAAGAGTTTGCATCTCCATC 57.556 34.615 10.39 0.00 32.93 3.51
6349 6627 0.602905 CGACACCCACACTCCCTTTC 60.603 60.000 0.00 0.00 0.00 2.62
6399 6677 1.134371 CAAGTAGGTGCCTTAGCCTCC 60.134 57.143 0.00 0.00 38.69 4.30
6407 6685 1.705186 TGCCTTAGCCTCCTTTCAGTT 59.295 47.619 0.00 0.00 38.69 3.16
6430 6708 1.627329 TGCAACTCAAGAGCCTCATCT 59.373 47.619 0.00 0.00 0.00 2.90
6431 6709 2.039480 TGCAACTCAAGAGCCTCATCTT 59.961 45.455 0.00 0.00 40.17 2.40
6432 6710 2.677337 GCAACTCAAGAGCCTCATCTTC 59.323 50.000 0.00 0.00 37.43 2.87
6433 6711 3.867600 GCAACTCAAGAGCCTCATCTTCA 60.868 47.826 0.00 0.00 37.43 3.02
6434 6712 3.608316 ACTCAAGAGCCTCATCTTCAC 57.392 47.619 0.00 0.00 37.43 3.18
6435 6713 3.172339 ACTCAAGAGCCTCATCTTCACT 58.828 45.455 0.00 0.00 37.43 3.41
6452 6730 5.883661 CTTCACTTGAAGCAACTTCTTTGA 58.116 37.500 6.05 5.72 44.10 2.69
6453 6731 6.455360 TTCACTTGAAGCAACTTCTTTGAT 57.545 33.333 8.66 0.00 40.73 2.57
6454 6732 6.455360 TCACTTGAAGCAACTTCTTTGATT 57.545 33.333 8.66 0.00 46.60 2.57
6461 6739 3.058639 AGCAACTTCTTTGATTCGACTGC 60.059 43.478 0.00 0.00 37.39 4.40
6500 6779 7.673641 TTCCATTGAAATTATTGTGGCCTAT 57.326 32.000 3.32 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
163 164 3.162147 TCACTGCCTCTCTACTCTGTT 57.838 47.619 0.00 0.00 0.00 3.16
463 464 1.858091 ACGGCGCTGATTTCTATGAG 58.142 50.000 25.98 0.00 0.00 2.90
1172 1174 2.065799 GAGGGAGAGGGAGAGAGAGAT 58.934 57.143 0.00 0.00 0.00 2.75
1183 1223 0.319728 CACACACACAGAGGGAGAGG 59.680 60.000 0.00 0.00 0.00 3.69
1189 1229 2.837498 TCAACATCACACACACAGAGG 58.163 47.619 0.00 0.00 0.00 3.69
1191 1231 3.814842 GGAATCAACATCACACACACAGA 59.185 43.478 0.00 0.00 0.00 3.41
1222 1262 5.343249 AGTTTCAAGAACACAAGAACATGC 58.657 37.500 0.00 0.00 0.00 4.06
1232 1272 6.704512 TTTTTGCTGAAGTTTCAAGAACAC 57.295 33.333 0.00 0.00 36.64 3.32
1259 1299 3.551846 ACAACGATTCAAAAGGACACCT 58.448 40.909 0.00 0.00 33.87 4.00
1260 1300 3.982576 ACAACGATTCAAAAGGACACC 57.017 42.857 0.00 0.00 0.00 4.16
1262 1302 4.915704 GTCAACAACGATTCAAAAGGACA 58.084 39.130 0.00 0.00 0.00 4.02
1279 1329 4.340263 GAGTTCCTCAAAACAACGTCAAC 58.660 43.478 0.00 0.00 0.00 3.18
1283 1333 2.350498 CACGAGTTCCTCAAAACAACGT 59.650 45.455 0.00 0.00 41.36 3.99
1316 1366 1.688735 AGAAGGAAAACAGGCAAAGGC 59.311 47.619 0.00 0.00 40.13 4.35
1321 1388 2.489073 GGAAGGAGAAGGAAAACAGGCA 60.489 50.000 0.00 0.00 0.00 4.75
1322 1389 2.163509 GGAAGGAGAAGGAAAACAGGC 58.836 52.381 0.00 0.00 0.00 4.85
1323 1390 2.555448 GGGGAAGGAGAAGGAAAACAGG 60.555 54.545 0.00 0.00 0.00 4.00
1326 1393 2.217510 GGGGGAAGGAGAAGGAAAAC 57.782 55.000 0.00 0.00 0.00 2.43
1490 1558 6.998968 TTAAGACAAAAACCCACGTAGAAA 57.001 33.333 0.00 0.00 0.00 2.52
1491 1559 7.571080 AATTAAGACAAAAACCCACGTAGAA 57.429 32.000 0.00 0.00 0.00 2.10
1496 1564 6.416750 GTCTCAAATTAAGACAAAAACCCACG 59.583 38.462 13.40 0.00 42.23 4.94
1562 1632 5.873179 TTTTAGGACAAGAAAATCGCGAT 57.127 34.783 17.62 17.62 0.00 4.58
1602 1672 9.371136 TGATGATCTATGAAAAGTCAAGTACAC 57.629 33.333 0.00 0.00 37.30 2.90
1713 1783 7.305763 GCATGAGTAAACGAACAAACGAATTTT 60.306 33.333 0.00 0.00 37.03 1.82
1760 1833 3.646946 CTTTCTTTTTGAAGGGAGCTGC 58.353 45.455 0.00 0.00 35.89 5.25
1897 1976 2.006888 CAGTTGGTTGTCACGTTCAGT 58.993 47.619 0.00 0.00 0.00 3.41
2175 2254 3.494626 CACAATGCCTAATAGTACCTGCG 59.505 47.826 0.00 0.00 0.00 5.18
2292 2401 1.030457 GAGCTGAGCAAATCCATGGG 58.970 55.000 13.02 0.00 0.00 4.00
2345 2454 9.316859 GTTAACATTTTCTGCAACAATAAATGC 57.683 29.630 0.00 0.00 38.91 3.56
2427 2536 1.927895 ACAGCGCTTACTAGATGTGC 58.072 50.000 7.50 4.34 38.64 4.57
2428 2537 3.775202 AGAACAGCGCTTACTAGATGTG 58.225 45.455 7.50 0.00 0.00 3.21
2434 2543 7.933396 TGTTATATGTAGAACAGCGCTTACTA 58.067 34.615 7.50 9.07 33.03 1.82
2440 2549 6.102006 TGTTTGTTATATGTAGAACAGCGC 57.898 37.500 0.00 0.00 38.46 5.92
2502 2611 6.313519 AGAAGTAGCATTTTACCATCTCCA 57.686 37.500 0.00 0.00 0.00 3.86
2506 2615 5.463724 CCTCGAGAAGTAGCATTTTACCATC 59.536 44.000 15.71 0.00 0.00 3.51
2561 2670 0.514255 CGCAATGACCTCCATATGCG 59.486 55.000 14.65 14.65 45.84 4.73
2575 2684 0.029834 GATCAGAATTGGCGCGCAAT 59.970 50.000 34.42 25.23 0.00 3.56
2743 2853 1.859302 AGAAGCTTCCGATCTGGTCT 58.141 50.000 22.81 0.00 39.52 3.85
2812 2922 1.489070 CGCGGTTGTTGACGGTTACA 61.489 55.000 0.00 0.00 0.00 2.41
3041 3153 3.679389 TCTGCCAGGAATCAAGAAAGAC 58.321 45.455 0.00 0.00 0.00 3.01
3097 3209 8.899427 TGATTTTCTCTATATCTTGCCAGAAG 57.101 34.615 0.00 0.00 30.76 2.85
3152 3264 5.416271 TCGGTCTAAGGCAAGAATAAACT 57.584 39.130 0.00 0.00 0.00 2.66
3292 3404 0.250038 TGCAAGTGACAGAGAGCACC 60.250 55.000 0.00 0.00 35.67 5.01
3586 3700 5.044919 TCACCATACCTGGAGACATTGAATT 60.045 40.000 0.00 0.00 46.37 2.17
3593 3707 7.872061 ATTATATTCACCATACCTGGAGACA 57.128 36.000 0.00 0.00 46.37 3.41
3743 3857 2.290367 CTCGTGCAATTTCCAAGTCACA 59.710 45.455 0.00 0.00 0.00 3.58
3801 3915 8.492673 TGTTAACAATCTTGACACTGATATCC 57.507 34.615 5.64 0.00 0.00 2.59
3898 4012 1.106285 GCCTGTTTAGAGCATTGGGG 58.894 55.000 0.00 0.00 0.00 4.96
4067 4181 5.888161 GTCCATGGTCACCAAGAAAGAATAT 59.112 40.000 12.58 0.00 36.95 1.28
4070 4184 3.486383 GTCCATGGTCACCAAGAAAGAA 58.514 45.455 12.58 0.00 36.95 2.52
4103 4217 5.585820 TTGCCACGATGTAATAGTCTGTA 57.414 39.130 0.00 0.00 26.01 2.74
4288 4402 3.258372 GTCAAGTCACCCATCAGTCACTA 59.742 47.826 0.00 0.00 0.00 2.74
4301 4415 3.698029 ACAGCAATGTTGTCAAGTCAC 57.302 42.857 0.00 0.00 0.00 3.67
4355 4469 8.463930 TTCAAGAGTTGATGGTAAAGAACAAT 57.536 30.769 0.00 0.00 39.84 2.71
4364 4478 6.591935 AGACAAGTTTCAAGAGTTGATGGTA 58.408 36.000 0.00 0.00 39.84 3.25
4512 4626 1.073025 AATGCGCAAGGGTGACTCA 59.927 52.632 17.11 0.00 38.28 3.41
4518 4632 3.055719 CCGTCAATGCGCAAGGGT 61.056 61.111 17.11 0.00 38.28 4.34
4547 4661 4.694509 AGTACGACACTCTGTTTATCGTCT 59.305 41.667 0.26 0.00 44.34 4.18
4670 4784 2.424601 GCATTTAGCACAGATGAAGCCA 59.575 45.455 0.00 0.00 44.79 4.75
4816 4930 6.331061 ACTACTCGCTGGTTTAAAGACTATG 58.669 40.000 0.00 0.00 0.00 2.23
5099 5220 2.470938 GAACAGCAGTCCACCCTCCC 62.471 65.000 0.00 0.00 0.00 4.30
5114 5235 1.007734 GTCGAGCGACACCAGAACA 60.008 57.895 17.21 0.00 44.02 3.18
5482 5603 6.421801 GTCAAATTTAACTGCAAATCACAGCT 59.578 34.615 0.00 0.00 38.79 4.24
5511 5632 9.959749 CAATTCCTAACTAACAACTTTTAGCAA 57.040 29.630 0.00 0.00 33.02 3.91
5515 5636 8.852135 CCCACAATTCCTAACTAACAACTTTTA 58.148 33.333 0.00 0.00 0.00 1.52
5536 5657 5.966853 TGTATGTTCTATCAATCCCCACA 57.033 39.130 0.00 0.00 0.00 4.17
5639 5760 0.308684 TTGCGCAAAGTGCTTCTCAG 59.691 50.000 22.78 0.00 42.25 3.35
5783 6055 7.451281 CATTCATCATGCAGAAAATTCAGTC 57.549 36.000 0.00 0.00 0.00 3.51
5822 6094 0.899019 TTGCACTGCTCGGGTATACA 59.101 50.000 5.01 0.00 0.00 2.29
5870 6142 3.370672 TGATCGATGAAAACATGTCCACG 59.629 43.478 0.54 5.42 0.00 4.94
5873 6145 5.106555 ACAACTGATCGATGAAAACATGTCC 60.107 40.000 0.54 0.00 0.00 4.02
5882 6154 9.653287 AAATCTACTTAACAACTGATCGATGAA 57.347 29.630 0.54 0.00 0.00 2.57
5884 6156 8.331022 CCAAATCTACTTAACAACTGATCGATG 58.669 37.037 0.54 0.00 0.00 3.84
5885 6157 7.011482 GCCAAATCTACTTAACAACTGATCGAT 59.989 37.037 0.00 0.00 0.00 3.59
5886 6158 6.312918 GCCAAATCTACTTAACAACTGATCGA 59.687 38.462 0.00 0.00 0.00 3.59
5887 6159 6.092122 TGCCAAATCTACTTAACAACTGATCG 59.908 38.462 0.00 0.00 0.00 3.69
5888 6160 7.119846 AGTGCCAAATCTACTTAACAACTGATC 59.880 37.037 0.00 0.00 0.00 2.92
5889 6161 6.942576 AGTGCCAAATCTACTTAACAACTGAT 59.057 34.615 0.00 0.00 0.00 2.90
5890 6162 6.296026 AGTGCCAAATCTACTTAACAACTGA 58.704 36.000 0.00 0.00 0.00 3.41
5891 6163 6.560253 AGTGCCAAATCTACTTAACAACTG 57.440 37.500 0.00 0.00 0.00 3.16
5892 6164 6.546034 ACAAGTGCCAAATCTACTTAACAACT 59.454 34.615 0.00 0.00 33.63 3.16
5893 6165 6.735130 ACAAGTGCCAAATCTACTTAACAAC 58.265 36.000 0.00 0.00 33.63 3.32
5894 6166 6.952773 ACAAGTGCCAAATCTACTTAACAA 57.047 33.333 0.00 0.00 33.63 2.83
5895 6167 8.347035 GTTTACAAGTGCCAAATCTACTTAACA 58.653 33.333 0.00 0.00 33.63 2.41
5896 6168 7.806487 GGTTTACAAGTGCCAAATCTACTTAAC 59.194 37.037 0.00 0.00 33.63 2.01
5897 6169 7.722285 AGGTTTACAAGTGCCAAATCTACTTAA 59.278 33.333 0.00 0.00 33.63 1.85
5898 6170 7.174253 CAGGTTTACAAGTGCCAAATCTACTTA 59.826 37.037 0.00 0.00 33.63 2.24
5899 6171 6.016276 CAGGTTTACAAGTGCCAAATCTACTT 60.016 38.462 0.00 0.00 35.18 2.24
5909 6181 3.793797 ACAAACAGGTTTACAAGTGCC 57.206 42.857 0.00 0.00 0.00 5.01
5927 6199 8.287439 TCATGTGAGTTTCCTTTTTCTTAACA 57.713 30.769 0.00 0.00 0.00 2.41
5928 6200 9.399403 GATCATGTGAGTTTCCTTTTTCTTAAC 57.601 33.333 0.00 0.00 0.00 2.01
5936 6208 3.760684 GCCTGATCATGTGAGTTTCCTTT 59.239 43.478 0.00 0.00 0.00 3.11
6000 6278 0.518636 CAGCACATTTCCACTGTCCG 59.481 55.000 0.00 0.00 0.00 4.79
6013 6291 1.055849 TAAGGCAAGAGTCCAGCACA 58.944 50.000 6.72 0.00 0.00 4.57
6014 6292 2.284190 GATAAGGCAAGAGTCCAGCAC 58.716 52.381 6.72 0.00 0.00 4.40
6015 6293 1.210478 GGATAAGGCAAGAGTCCAGCA 59.790 52.381 6.72 0.00 0.00 4.41
6016 6294 1.488393 AGGATAAGGCAAGAGTCCAGC 59.512 52.381 0.00 0.00 0.00 4.85
6017 6295 3.539604 CAAGGATAAGGCAAGAGTCCAG 58.460 50.000 0.00 0.00 0.00 3.86
6018 6296 2.356125 GCAAGGATAAGGCAAGAGTCCA 60.356 50.000 0.00 0.00 0.00 4.02
6019 6297 2.293170 GCAAGGATAAGGCAAGAGTCC 58.707 52.381 0.00 0.00 0.00 3.85
6020 6298 2.293170 GGCAAGGATAAGGCAAGAGTC 58.707 52.381 0.00 0.00 0.00 3.36
6021 6299 1.064389 GGGCAAGGATAAGGCAAGAGT 60.064 52.381 0.00 0.00 0.00 3.24
6022 6300 1.213926 AGGGCAAGGATAAGGCAAGAG 59.786 52.381 0.00 0.00 0.00 2.85
6023 6301 1.064463 CAGGGCAAGGATAAGGCAAGA 60.064 52.381 0.00 0.00 0.00 3.02
6024 6302 1.396653 CAGGGCAAGGATAAGGCAAG 58.603 55.000 0.00 0.00 0.00 4.01
6025 6303 0.033208 CCAGGGCAAGGATAAGGCAA 60.033 55.000 0.00 0.00 0.00 4.52
6026 6304 0.918799 TCCAGGGCAAGGATAAGGCA 60.919 55.000 0.00 0.00 0.00 4.75
6027 6305 0.480252 ATCCAGGGCAAGGATAAGGC 59.520 55.000 8.04 0.00 43.90 4.35
6031 6309 2.711009 CAGGTTATCCAGGGCAAGGATA 59.289 50.000 11.72 11.72 43.90 2.59
6033 6311 0.918983 CAGGTTATCCAGGGCAAGGA 59.081 55.000 0.00 0.00 39.97 3.36
6034 6312 0.753111 GCAGGTTATCCAGGGCAAGG 60.753 60.000 0.00 0.00 35.89 3.61
6035 6313 0.753111 GGCAGGTTATCCAGGGCAAG 60.753 60.000 0.00 0.00 36.43 4.01
6036 6314 1.214305 AGGCAGGTTATCCAGGGCAA 61.214 55.000 9.67 0.00 37.95 4.52
6037 6315 1.619363 AGGCAGGTTATCCAGGGCA 60.619 57.895 9.67 0.00 37.95 5.36
6038 6316 1.149401 GAGGCAGGTTATCCAGGGC 59.851 63.158 0.00 0.00 36.57 5.19
6039 6317 0.988145 TGGAGGCAGGTTATCCAGGG 60.988 60.000 0.00 0.00 38.19 4.45
6040 6318 1.143813 ATGGAGGCAGGTTATCCAGG 58.856 55.000 0.00 0.00 45.89 4.45
6041 6319 1.770658 TCATGGAGGCAGGTTATCCAG 59.229 52.381 0.00 0.00 45.89 3.86
6042 6320 1.891933 TCATGGAGGCAGGTTATCCA 58.108 50.000 0.00 0.00 46.69 3.41
6043 6321 2.173569 AGTTCATGGAGGCAGGTTATCC 59.826 50.000 0.00 0.00 0.00 2.59
6044 6322 3.118261 TGAGTTCATGGAGGCAGGTTATC 60.118 47.826 0.00 0.00 0.00 1.75
6045 6323 2.846206 TGAGTTCATGGAGGCAGGTTAT 59.154 45.455 0.00 0.00 0.00 1.89
6046 6324 2.265367 TGAGTTCATGGAGGCAGGTTA 58.735 47.619 0.00 0.00 0.00 2.85
6047 6325 1.067295 TGAGTTCATGGAGGCAGGTT 58.933 50.000 0.00 0.00 0.00 3.50
6048 6326 1.211457 GATGAGTTCATGGAGGCAGGT 59.789 52.381 0.00 0.00 36.57 4.00
6049 6327 1.211212 TGATGAGTTCATGGAGGCAGG 59.789 52.381 0.00 0.00 36.57 4.85
6050 6328 2.286872 GTGATGAGTTCATGGAGGCAG 58.713 52.381 0.00 0.00 36.54 4.85
6051 6329 1.405933 CGTGATGAGTTCATGGAGGCA 60.406 52.381 0.00 0.00 37.65 4.75
6052 6330 1.293924 CGTGATGAGTTCATGGAGGC 58.706 55.000 0.00 0.00 37.65 4.70
6053 6331 1.293924 GCGTGATGAGTTCATGGAGG 58.706 55.000 0.00 0.00 41.02 4.30
6054 6332 1.134580 AGGCGTGATGAGTTCATGGAG 60.135 52.381 0.00 0.00 41.02 3.86
6055 6333 0.904649 AGGCGTGATGAGTTCATGGA 59.095 50.000 0.00 0.00 41.02 3.41
6056 6334 1.012086 CAGGCGTGATGAGTTCATGG 58.988 55.000 0.00 0.00 41.02 3.66
6057 6335 1.662629 GACAGGCGTGATGAGTTCATG 59.337 52.381 14.38 0.00 43.16 3.07
6058 6336 1.406069 GGACAGGCGTGATGAGTTCAT 60.406 52.381 14.38 0.00 36.54 2.57
6059 6337 0.037326 GGACAGGCGTGATGAGTTCA 60.037 55.000 14.38 0.00 0.00 3.18
6060 6338 0.037326 TGGACAGGCGTGATGAGTTC 60.037 55.000 14.38 0.00 0.00 3.01
6061 6339 0.320771 GTGGACAGGCGTGATGAGTT 60.321 55.000 14.38 0.00 0.00 3.01
6062 6340 1.293498 GTGGACAGGCGTGATGAGT 59.707 57.895 14.38 0.00 0.00 3.41
6063 6341 0.320683 TTGTGGACAGGCGTGATGAG 60.321 55.000 14.38 0.00 0.00 2.90
6064 6342 0.320683 CTTGTGGACAGGCGTGATGA 60.321 55.000 14.38 0.00 0.00 2.92
6065 6343 1.915614 GCTTGTGGACAGGCGTGATG 61.916 60.000 14.38 0.00 39.14 3.07
6066 6344 1.672356 GCTTGTGGACAGGCGTGAT 60.672 57.895 14.38 0.00 39.14 3.06
6067 6345 2.280797 GCTTGTGGACAGGCGTGA 60.281 61.111 14.38 0.00 39.14 4.35
6072 6350 2.414994 ATCTGATGCTTGTGGACAGG 57.585 50.000 0.00 0.00 0.00 4.00
6073 6351 3.119602 CCAAATCTGATGCTTGTGGACAG 60.120 47.826 0.00 0.00 0.00 3.51
6074 6352 2.821378 CCAAATCTGATGCTTGTGGACA 59.179 45.455 0.00 0.00 0.00 4.02
6075 6353 2.416431 GCCAAATCTGATGCTTGTGGAC 60.416 50.000 0.00 0.00 0.00 4.02
6076 6354 1.820519 GCCAAATCTGATGCTTGTGGA 59.179 47.619 0.00 0.00 0.00 4.02
6077 6355 1.546923 TGCCAAATCTGATGCTTGTGG 59.453 47.619 0.00 0.00 0.00 4.17
6078 6356 3.057104 TCTTGCCAAATCTGATGCTTGTG 60.057 43.478 0.00 0.00 0.00 3.33
6079 6357 3.057033 GTCTTGCCAAATCTGATGCTTGT 60.057 43.478 0.00 0.00 0.00 3.16
6080 6358 3.057104 TGTCTTGCCAAATCTGATGCTTG 60.057 43.478 0.00 0.00 0.00 4.01
6081 6359 3.057033 GTGTCTTGCCAAATCTGATGCTT 60.057 43.478 0.00 0.00 0.00 3.91
6082 6360 2.490903 GTGTCTTGCCAAATCTGATGCT 59.509 45.455 0.00 0.00 0.00 3.79
6083 6361 2.730090 CGTGTCTTGCCAAATCTGATGC 60.730 50.000 0.00 0.00 0.00 3.91
6084 6362 2.743664 TCGTGTCTTGCCAAATCTGATG 59.256 45.455 0.00 0.00 0.00 3.07
6085 6363 3.057969 TCGTGTCTTGCCAAATCTGAT 57.942 42.857 0.00 0.00 0.00 2.90
6086 6364 2.542020 TCGTGTCTTGCCAAATCTGA 57.458 45.000 0.00 0.00 0.00 3.27
6087 6365 3.426695 GGATTCGTGTCTTGCCAAATCTG 60.427 47.826 0.00 0.00 0.00 2.90
6088 6366 2.749621 GGATTCGTGTCTTGCCAAATCT 59.250 45.455 0.00 0.00 0.00 2.40
6089 6367 2.749621 AGGATTCGTGTCTTGCCAAATC 59.250 45.455 0.00 0.00 0.00 2.17
6090 6368 2.749621 GAGGATTCGTGTCTTGCCAAAT 59.250 45.455 0.00 0.00 0.00 2.32
6091 6369 2.151202 GAGGATTCGTGTCTTGCCAAA 58.849 47.619 0.00 0.00 0.00 3.28
6092 6370 1.071542 TGAGGATTCGTGTCTTGCCAA 59.928 47.619 0.00 0.00 0.00 4.52
6093 6371 0.684535 TGAGGATTCGTGTCTTGCCA 59.315 50.000 0.00 0.00 0.00 4.92
6094 6372 1.363744 CTGAGGATTCGTGTCTTGCC 58.636 55.000 0.00 0.00 0.00 4.52
6095 6373 0.723981 GCTGAGGATTCGTGTCTTGC 59.276 55.000 0.00 0.00 0.00 4.01
6096 6374 1.998315 CAGCTGAGGATTCGTGTCTTG 59.002 52.381 8.42 0.00 0.00 3.02
6097 6375 1.620819 ACAGCTGAGGATTCGTGTCTT 59.379 47.619 23.35 0.00 0.00 3.01
6098 6376 1.067283 CACAGCTGAGGATTCGTGTCT 60.067 52.381 23.35 0.00 0.00 3.41
6099 6377 1.337260 ACACAGCTGAGGATTCGTGTC 60.337 52.381 23.35 0.00 32.37 3.67
6100 6378 0.681733 ACACAGCTGAGGATTCGTGT 59.318 50.000 23.35 8.73 32.98 4.49
6101 6379 1.337167 TGACACAGCTGAGGATTCGTG 60.337 52.381 23.35 8.00 0.00 4.35
6102 6380 0.969149 TGACACAGCTGAGGATTCGT 59.031 50.000 23.35 5.20 0.00 3.85
6103 6381 1.998315 CTTGACACAGCTGAGGATTCG 59.002 52.381 23.35 1.88 0.00 3.34
6104 6382 1.736681 GCTTGACACAGCTGAGGATTC 59.263 52.381 23.35 7.01 36.79 2.52
6105 6383 1.818642 GCTTGACACAGCTGAGGATT 58.181 50.000 23.35 0.00 36.79 3.01
6106 6384 3.547567 GCTTGACACAGCTGAGGAT 57.452 52.632 23.35 1.68 36.79 3.24
6113 6391 0.233332 GTTCGACAGCTTGACACAGC 59.767 55.000 0.00 2.52 40.44 4.40
6114 6392 1.524355 CAGTTCGACAGCTTGACACAG 59.476 52.381 0.00 0.00 0.00 3.66
6115 6393 1.134818 ACAGTTCGACAGCTTGACACA 60.135 47.619 0.00 0.00 0.00 3.72
6116 6394 1.523095 GACAGTTCGACAGCTTGACAC 59.477 52.381 0.00 0.00 0.00 3.67
6117 6395 1.538204 GGACAGTTCGACAGCTTGACA 60.538 52.381 0.00 0.00 0.00 3.58
6118 6396 1.140816 GGACAGTTCGACAGCTTGAC 58.859 55.000 0.00 0.00 0.00 3.18
6119 6397 1.040646 AGGACAGTTCGACAGCTTGA 58.959 50.000 0.00 0.00 0.00 3.02
6120 6398 2.724977 TAGGACAGTTCGACAGCTTG 57.275 50.000 0.00 0.00 0.00 4.01
6121 6399 4.705507 TCTTATAGGACAGTTCGACAGCTT 59.294 41.667 0.00 0.00 0.00 3.74
6122 6400 4.270834 TCTTATAGGACAGTTCGACAGCT 58.729 43.478 0.00 0.00 0.00 4.24
6123 6401 4.634184 TCTTATAGGACAGTTCGACAGC 57.366 45.455 0.00 0.00 0.00 4.40
6124 6402 6.378710 TGATCTTATAGGACAGTTCGACAG 57.621 41.667 0.00 0.00 0.00 3.51
6125 6403 6.769134 TTGATCTTATAGGACAGTTCGACA 57.231 37.500 0.00 0.00 0.00 4.35
6126 6404 8.569641 AGTATTGATCTTATAGGACAGTTCGAC 58.430 37.037 0.00 0.00 0.00 4.20
6127 6405 8.693120 AGTATTGATCTTATAGGACAGTTCGA 57.307 34.615 0.00 0.00 0.00 3.71
6128 6406 8.024285 GGAGTATTGATCTTATAGGACAGTTCG 58.976 40.741 0.00 0.00 0.00 3.95
6129 6407 8.861086 TGGAGTATTGATCTTATAGGACAGTTC 58.139 37.037 0.00 0.00 0.00 3.01
6130 6408 8.783660 TGGAGTATTGATCTTATAGGACAGTT 57.216 34.615 0.00 0.00 0.00 3.16
6131 6409 8.964533 ATGGAGTATTGATCTTATAGGACAGT 57.035 34.615 0.00 0.00 0.00 3.55
6132 6410 8.474025 GGATGGAGTATTGATCTTATAGGACAG 58.526 40.741 0.00 0.00 0.00 3.51
6133 6411 7.122799 CGGATGGAGTATTGATCTTATAGGACA 59.877 40.741 0.00 0.00 0.00 4.02
6134 6412 7.122948 ACGGATGGAGTATTGATCTTATAGGAC 59.877 40.741 0.00 0.00 0.00 3.85
6135 6413 7.182760 ACGGATGGAGTATTGATCTTATAGGA 58.817 38.462 0.00 0.00 0.00 2.94
6136 6414 7.411486 ACGGATGGAGTATTGATCTTATAGG 57.589 40.000 0.00 0.00 0.00 2.57
6137 6415 8.523658 TGAACGGATGGAGTATTGATCTTATAG 58.476 37.037 0.00 0.00 0.00 1.31
6138 6416 8.304596 GTGAACGGATGGAGTATTGATCTTATA 58.695 37.037 0.00 0.00 0.00 0.98
6139 6417 7.155328 GTGAACGGATGGAGTATTGATCTTAT 58.845 38.462 0.00 0.00 0.00 1.73
6140 6418 6.097696 TGTGAACGGATGGAGTATTGATCTTA 59.902 38.462 0.00 0.00 0.00 2.10
6141 6419 5.104941 TGTGAACGGATGGAGTATTGATCTT 60.105 40.000 0.00 0.00 0.00 2.40
6142 6420 4.405680 TGTGAACGGATGGAGTATTGATCT 59.594 41.667 0.00 0.00 0.00 2.75
6199 6477 7.547019 ACACTGAAATGCATCTATATACATCCG 59.453 37.037 0.00 0.00 0.00 4.18
6213 6491 4.398988 AGTGAAGAAACACACTGAAATGCA 59.601 37.500 0.00 0.00 44.18 3.96
6220 6498 5.998454 AGAATGAGTGAAGAAACACACTG 57.002 39.130 0.00 0.00 45.54 3.66
6251 6529 9.967451 TTTTGGATATTTCAGTATGGACTAACA 57.033 29.630 0.00 0.00 36.16 2.41
6253 6531 9.967451 TGTTTTGGATATTTCAGTATGGACTAA 57.033 29.630 0.00 0.00 36.16 2.24
6255 6533 9.125026 GATGTTTTGGATATTTCAGTATGGACT 57.875 33.333 0.00 0.00 36.16 3.85
6256 6534 9.125026 AGATGTTTTGGATATTTCAGTATGGAC 57.875 33.333 0.00 0.00 36.16 4.02
6257 6535 9.699410 AAGATGTTTTGGATATTTCAGTATGGA 57.301 29.630 0.00 0.00 36.16 3.41
6270 6548 9.787532 CGTTCACAAATATAAGATGTTTTGGAT 57.212 29.630 0.00 0.00 34.23 3.41
6271 6549 8.240682 CCGTTCACAAATATAAGATGTTTTGGA 58.759 33.333 0.00 0.00 34.23 3.53
6272 6550 8.240682 TCCGTTCACAAATATAAGATGTTTTGG 58.759 33.333 0.00 0.00 34.23 3.28
6273 6551 9.277565 CTCCGTTCACAAATATAAGATGTTTTG 57.722 33.333 0.00 0.00 35.66 2.44
6274 6552 8.458843 CCTCCGTTCACAAATATAAGATGTTTT 58.541 33.333 0.00 0.00 0.00 2.43
6275 6553 7.067008 CCCTCCGTTCACAAATATAAGATGTTT 59.933 37.037 0.00 0.00 0.00 2.83
6276 6554 6.542370 CCCTCCGTTCACAAATATAAGATGTT 59.458 38.462 0.00 0.00 0.00 2.71
6277 6555 6.055588 CCCTCCGTTCACAAATATAAGATGT 58.944 40.000 0.00 0.00 0.00 3.06
6278 6556 6.288294 TCCCTCCGTTCACAAATATAAGATG 58.712 40.000 0.00 0.00 0.00 2.90
6279 6557 6.099845 ACTCCCTCCGTTCACAAATATAAGAT 59.900 38.462 0.00 0.00 0.00 2.40
6280 6558 5.424252 ACTCCCTCCGTTCACAAATATAAGA 59.576 40.000 0.00 0.00 0.00 2.10
6281 6559 5.671493 ACTCCCTCCGTTCACAAATATAAG 58.329 41.667 0.00 0.00 0.00 1.73
6282 6560 5.687166 ACTCCCTCCGTTCACAAATATAA 57.313 39.130 0.00 0.00 0.00 0.98
6283 6561 5.895534 AGTACTCCCTCCGTTCACAAATATA 59.104 40.000 0.00 0.00 0.00 0.86
6284 6562 4.715297 AGTACTCCCTCCGTTCACAAATAT 59.285 41.667 0.00 0.00 0.00 1.28
6285 6563 4.091549 AGTACTCCCTCCGTTCACAAATA 58.908 43.478 0.00 0.00 0.00 1.40
6286 6564 2.904434 AGTACTCCCTCCGTTCACAAAT 59.096 45.455 0.00 0.00 0.00 2.32
6289 6567 2.005370 AAGTACTCCCTCCGTTCACA 57.995 50.000 0.00 0.00 0.00 3.58
6295 6573 6.712179 AACTCTTAATAAGTACTCCCTCCG 57.288 41.667 0.00 0.00 0.00 4.63
6309 6587 5.525378 GTCGATGGAGATGCAAACTCTTAAT 59.475 40.000 18.88 12.51 35.84 1.40
6330 6608 0.602905 GAAAGGGAGTGTGGGTGTCG 60.603 60.000 0.00 0.00 0.00 4.35
6349 6627 1.134901 CGGAGTCGTTGAGAGGTCG 59.865 63.158 0.00 0.00 0.00 4.79
6380 6658 1.205055 GGAGGCTAAGGCACCTACTT 58.795 55.000 1.20 0.00 40.87 2.24
6390 6668 3.438434 GCAGAAACTGAAAGGAGGCTAAG 59.562 47.826 2.81 0.00 39.30 2.18
6407 6685 1.417517 TGAGGCTCTTGAGTTGCAGAA 59.582 47.619 16.72 0.00 0.00 3.02
6430 6708 5.895636 TCAAAGAAGTTGCTTCAAGTGAA 57.104 34.783 10.91 0.00 42.37 3.18
6431 6709 6.455360 AATCAAAGAAGTTGCTTCAAGTGA 57.545 33.333 10.91 10.24 42.37 3.41
6432 6710 5.397534 CGAATCAAAGAAGTTGCTTCAAGTG 59.602 40.000 10.91 6.07 40.75 3.16
6433 6711 5.296780 TCGAATCAAAGAAGTTGCTTCAAGT 59.703 36.000 10.91 0.00 40.75 3.16
6434 6712 5.622856 GTCGAATCAAAGAAGTTGCTTCAAG 59.377 40.000 10.91 1.57 40.75 3.02
6435 6713 5.296780 AGTCGAATCAAAGAAGTTGCTTCAA 59.703 36.000 10.91 0.00 40.75 2.69
6441 6719 4.739046 AGCAGTCGAATCAAAGAAGTTG 57.261 40.909 0.00 0.00 38.71 3.16
6443 6721 6.091441 GTCATAAGCAGTCGAATCAAAGAAGT 59.909 38.462 0.00 0.00 0.00 3.01
6445 6723 5.351465 GGTCATAAGCAGTCGAATCAAAGAA 59.649 40.000 0.00 0.00 0.00 2.52
6446 6724 4.870426 GGTCATAAGCAGTCGAATCAAAGA 59.130 41.667 0.00 0.00 0.00 2.52
6449 6727 3.932710 GTGGTCATAAGCAGTCGAATCAA 59.067 43.478 0.00 0.00 32.53 2.57
6450 6728 3.521560 GTGGTCATAAGCAGTCGAATCA 58.478 45.455 0.00 0.00 32.53 2.57
6451 6729 2.866762 GGTGGTCATAAGCAGTCGAATC 59.133 50.000 0.00 0.00 32.53 2.52
6452 6730 2.501723 AGGTGGTCATAAGCAGTCGAAT 59.498 45.455 0.00 0.00 32.53 3.34
6453 6731 1.899814 AGGTGGTCATAAGCAGTCGAA 59.100 47.619 0.00 0.00 32.53 3.71
6454 6732 1.557099 AGGTGGTCATAAGCAGTCGA 58.443 50.000 0.00 0.00 32.53 4.20
6455 6733 2.386661 AAGGTGGTCATAAGCAGTCG 57.613 50.000 0.00 0.00 32.53 4.18
6456 6734 4.816925 GGAATAAGGTGGTCATAAGCAGTC 59.183 45.833 0.00 0.00 32.53 3.51
6457 6735 4.227300 TGGAATAAGGTGGTCATAAGCAGT 59.773 41.667 0.00 0.00 32.53 4.40
6458 6736 4.780815 TGGAATAAGGTGGTCATAAGCAG 58.219 43.478 0.00 0.00 32.53 4.24
6461 6739 7.880160 TTCAATGGAATAAGGTGGTCATAAG 57.120 36.000 0.00 0.00 0.00 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.