Multiple sequence alignment - TraesCS7A01G302200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G302200 chr7A 100.000 7194 0 0 1 7194 422835063 422827870 0.000000e+00 13285.0
1 TraesCS7A01G302200 chr7D 95.828 4099 127 20 12 4085 376095510 376091431 0.000000e+00 6582.0
2 TraesCS7A01G302200 chr7D 97.401 1924 33 10 4117 6035 376090491 376088580 0.000000e+00 3260.0
3 TraesCS7A01G302200 chr7D 95.148 742 21 6 6034 6770 376088535 376087804 0.000000e+00 1157.0
4 TraesCS7A01G302200 chr7B 94.366 2751 117 16 1 2735 371042331 371039603 0.000000e+00 4187.0
5 TraesCS7A01G302200 chr7B 95.232 2202 82 9 2800 4986 371039567 371037374 0.000000e+00 3463.0
6 TraesCS7A01G302200 chr7B 96.561 785 21 3 5256 6035 371037032 371036249 0.000000e+00 1295.0
7 TraesCS7A01G302200 chr7B 89.889 722 33 15 6035 6726 371036203 371035492 0.000000e+00 893.0
8 TraesCS7A01G302200 chr7B 91.165 249 16 4 5035 5278 371037366 371037119 4.160000e-87 333.0
9 TraesCS7A01G302200 chr2A 80.240 749 115 24 3204 3927 728077177 728076437 3.820000e-147 532.0
10 TraesCS7A01G302200 chr2A 90.616 341 29 3 6855 7194 132263174 132262836 3.960000e-122 449.0
11 TraesCS7A01G302200 chr2A 89.356 357 33 5 6840 7194 524545616 524545969 1.840000e-120 444.0
12 TraesCS7A01G302200 chr2A 79.492 590 92 23 4435 5007 728076129 728075552 6.770000e-105 392.0
13 TraesCS7A01G302200 chr2A 75.706 815 152 21 1883 2668 728078581 728077784 4.100000e-97 366.0
14 TraesCS7A01G302200 chr2A 80.750 400 72 4 3512 3910 726763587 726763982 2.520000e-79 307.0
15 TraesCS7A01G302200 chr2A 83.051 236 38 2 2426 2660 726762713 726762947 5.650000e-51 213.0
16 TraesCS7A01G302200 chr2A 78.507 335 55 15 5247 5568 728075353 728075023 3.400000e-48 204.0
17 TraesCS7A01G302200 chr2A 80.916 262 41 8 3204 3460 726763243 726763500 1.580000e-46 198.0
18 TraesCS7A01G302200 chr2A 92.969 128 8 1 4101 4227 628670178 628670051 1.230000e-42 185.0
19 TraesCS7A01G302200 chr2A 81.890 127 18 4 2803 2925 728077685 728077560 1.280000e-17 102.0
20 TraesCS7A01G302200 chr1A 93.353 346 23 0 6849 7194 428999505 428999160 4.980000e-141 512.0
21 TraesCS7A01G302200 chr1A 92.381 315 22 2 6882 7194 294510344 294510658 1.420000e-121 448.0
22 TraesCS7A01G302200 chr2B 81.162 637 89 19 3309 3922 719529308 719528680 3.900000e-132 483.0
23 TraesCS7A01G302200 chr2B 79.026 739 118 26 3195 3910 717916274 717916998 8.450000e-129 472.0
24 TraesCS7A01G302200 chr2B 83.830 235 37 1 2426 2660 717915771 717916004 9.390000e-54 222.0
25 TraesCS7A01G302200 chr2B 79.470 302 48 13 5286 5576 719527436 719527138 1.220000e-47 202.0
26 TraesCS7A01G302200 chr2B 92.063 126 8 2 4099 4222 260758215 260758090 7.420000e-40 176.0
27 TraesCS7A01G302200 chr2B 81.102 127 19 4 2803 2925 719530091 719529966 5.940000e-16 97.1
28 TraesCS7A01G302200 chr6A 91.329 346 26 3 6849 7194 15622790 15622449 3.040000e-128 470.0
29 TraesCS7A01G302200 chr6A 89.362 141 13 2 4099 4237 243958430 243958290 7.420000e-40 176.0
30 TraesCS7A01G302200 chr3A 90.725 345 30 2 6850 7194 16940421 16940079 6.580000e-125 459.0
31 TraesCS7A01G302200 chr3A 89.266 354 35 3 6841 7194 674040086 674039736 2.380000e-119 440.0
32 TraesCS7A01G302200 chr3A 89.045 356 35 3 6840 7194 434460689 434461041 8.570000e-119 438.0
33 TraesCS7A01G302200 chr3A 89.922 129 10 2 4099 4226 11940891 11941017 5.770000e-36 163.0
34 TraesCS7A01G302200 chr5A 87.955 357 40 3 6839 7194 574392157 574391803 1.120000e-112 418.0
35 TraesCS7A01G302200 chr5A 88.194 144 13 3 4099 4240 452434928 452434787 1.240000e-37 169.0
36 TraesCS7A01G302200 chr2D 82.512 406 63 6 3506 3910 592284230 592284628 4.130000e-92 350.0
37 TraesCS7A01G302200 chr2D 90.769 130 9 3 4096 4222 206681105 206681234 3.450000e-38 171.0
38 TraesCS7A01G302200 chr2D 85.849 106 11 3 3195 3298 592283828 592283931 7.630000e-20 110.0
39 TraesCS7A01G302200 chr5D 90.780 141 10 3 4099 4237 265961977 265961838 1.230000e-42 185.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G302200 chr7A 422827870 422835063 7193 True 13285.000000 13285 100.000000 1 7194 1 chr7A.!!$R1 7193
1 TraesCS7A01G302200 chr7D 376087804 376095510 7706 True 3666.333333 6582 96.125667 12 6770 3 chr7D.!!$R1 6758
2 TraesCS7A01G302200 chr7B 371035492 371042331 6839 True 2034.200000 4187 93.442600 1 6726 5 chr7B.!!$R1 6725
3 TraesCS7A01G302200 chr2A 728075023 728078581 3558 True 319.200000 532 79.167000 1883 5568 5 chr2A.!!$R3 3685
4 TraesCS7A01G302200 chr2A 726762713 726763982 1269 False 239.333333 307 81.572333 2426 3910 3 chr2A.!!$F2 1484
5 TraesCS7A01G302200 chr2B 717915771 717916998 1227 False 347.000000 472 81.428000 2426 3910 2 chr2B.!!$F1 1484
6 TraesCS7A01G302200 chr2B 719527138 719530091 2953 True 260.700000 483 80.578000 2803 5576 3 chr2B.!!$R2 2773
7 TraesCS7A01G302200 chr2D 592283828 592284628 800 False 230.000000 350 84.180500 3195 3910 2 chr2D.!!$F2 715

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
151 153 0.258774 GCCCCCAGCTAAATCCTGAA 59.741 55.000 0.00 0.00 38.99 3.02 F
951 968 0.394216 TGAACTGTGCTTGCAGGTGT 60.394 50.000 0.00 0.00 36.40 4.16 F
1057 1074 0.464193 TGACGATGACGATACCCCGA 60.464 55.000 0.00 0.00 42.66 5.14 F
1260 1277 0.689623 CTTCAGGGTCTGTTCAGCCT 59.310 55.000 11.01 4.07 45.64 4.58 F
1538 1555 1.388547 TTGTTGAAGACTGCACCACC 58.611 50.000 0.00 0.00 0.00 4.61 F
1871 1888 1.611977 GTCTAACAACAAGGGGCCAAC 59.388 52.381 4.39 0.00 0.00 3.77 F
3334 3793 1.813178 GTGAGGGCCTTCAGTTTAAGC 59.187 52.381 19.41 0.20 0.00 3.09 F
4864 6413 3.498397 ACCAGCTTGATACAACGAAACTG 59.502 43.478 0.00 0.00 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1038 1055 0.464193 TCGGGGTATCGTCATCGTCA 60.464 55.000 0.00 0.00 38.33 4.35 R
1871 1888 2.222027 GGGGAGCACTCGAATTATTGG 58.778 52.381 0.00 0.00 0.00 3.16 R
1951 1971 3.442977 GCAGAAGCATCAGAAGATTTGGT 59.557 43.478 0.00 0.00 41.58 3.67 R
3181 3474 7.831753 TGAATTGAACAAACAGTTTAGTCCAA 58.168 30.769 0.00 1.04 41.51 3.53 R
3334 3793 9.369904 CCCATCTGAAACAATGTAATAAAAAGG 57.630 33.333 0.00 0.00 0.00 3.11 R
4097 5439 2.185004 ATTTGTGAACGGAGGGAGTG 57.815 50.000 0.00 0.00 0.00 3.51 R
4898 6447 1.067364 TGTACGGAACACTTTCGCAGA 59.933 47.619 0.00 0.00 31.43 4.26 R
6220 7975 0.033894 TCGAATTTACCAAGGGGCCC 60.034 55.000 17.12 17.12 37.90 5.80 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
133 134 2.716017 CCTGTCTCTCTCCGGTGGC 61.716 68.421 0.00 0.00 0.00 5.01
151 153 0.258774 GCCCCCAGCTAAATCCTGAA 59.741 55.000 0.00 0.00 38.99 3.02
155 157 2.570135 CCCAGCTAAATCCTGAAGCTC 58.430 52.381 0.00 0.00 44.58 4.09
162 164 4.141733 GCTAAATCCTGAAGCTCCTCTCTT 60.142 45.833 0.00 0.00 33.40 2.85
186 188 1.446099 CGCCGTATGTGTCACTGCT 60.446 57.895 4.27 0.00 0.00 4.24
190 192 1.686566 CGTATGTGTCACTGCTGGCG 61.687 60.000 4.27 0.00 0.00 5.69
219 221 2.550606 CTGGTCTAGTGTATCCTCTCGC 59.449 54.545 0.00 0.00 0.00 5.03
268 270 1.379176 TCTCTGGCGTGAGAGGGAG 60.379 63.158 11.50 0.00 40.10 4.30
269 271 1.379176 CTCTGGCGTGAGAGGGAGA 60.379 63.158 5.24 0.00 36.57 3.71
270 272 1.379176 TCTGGCGTGAGAGGGAGAG 60.379 63.158 0.00 0.00 0.00 3.20
271 273 1.379176 CTGGCGTGAGAGGGAGAGA 60.379 63.158 0.00 0.00 0.00 3.10
272 274 1.379176 TGGCGTGAGAGGGAGAGAG 60.379 63.158 0.00 0.00 0.00 3.20
273 275 1.077357 GGCGTGAGAGGGAGAGAGA 60.077 63.158 0.00 0.00 0.00 3.10
321 325 2.756283 AGACGAGAGAAGGCGGGG 60.756 66.667 0.00 0.00 0.00 5.73
538 548 4.465446 TCGCTCCCTCCCTCCCTG 62.465 72.222 0.00 0.00 0.00 4.45
542 552 4.741239 TCCCTCCCTCCCTGCACC 62.741 72.222 0.00 0.00 0.00 5.01
543 553 4.748798 CCCTCCCTCCCTGCACCT 62.749 72.222 0.00 0.00 0.00 4.00
544 554 2.612115 CCTCCCTCCCTGCACCTT 60.612 66.667 0.00 0.00 0.00 3.50
654 668 0.744281 TGTTCGCGCCATATGAGAGA 59.256 50.000 3.65 2.48 0.00 3.10
672 686 3.137360 AGAGAGGCTGGTTTCTGTTTCTT 59.863 43.478 0.00 0.00 0.00 2.52
673 687 4.348168 AGAGAGGCTGGTTTCTGTTTCTTA 59.652 41.667 0.00 0.00 0.00 2.10
749 765 2.042520 TTGGTCTTGTTGCGTCGTGC 62.043 55.000 0.00 0.00 46.70 5.34
766 782 3.068165 TCGTGCCTGATGATGTTAGTAGG 59.932 47.826 0.00 0.00 0.00 3.18
838 854 1.002069 AGACAGGGGATGATGGCAAA 58.998 50.000 0.00 0.00 0.00 3.68
884 901 1.746615 AGATGCCGTGATTTGCGCT 60.747 52.632 9.73 0.00 0.00 5.92
901 918 3.003480 GCGCTTAGTTCATTCTTCCACT 58.997 45.455 0.00 0.00 0.00 4.00
902 919 3.437049 GCGCTTAGTTCATTCTTCCACTT 59.563 43.478 0.00 0.00 0.00 3.16
919 936 2.225019 CACTTGTTCATCACCTGCAGTC 59.775 50.000 13.81 0.00 0.00 3.51
928 945 4.223700 TCATCACCTGCAGTCTTCTTACAT 59.776 41.667 13.81 0.00 0.00 2.29
951 968 0.394216 TGAACTGTGCTTGCAGGTGT 60.394 50.000 0.00 0.00 36.40 4.16
954 971 3.203546 CTGTGCTTGCAGGTGTGGC 62.204 63.158 0.00 0.00 33.11 5.01
1008 1025 1.251251 GCCAGGAAGCAATGTCTGTT 58.749 50.000 0.00 0.00 0.00 3.16
1016 1033 4.925646 GGAAGCAATGTCTGTTTTCAATCC 59.074 41.667 0.00 0.00 0.00 3.01
1018 1035 5.796424 AGCAATGTCTGTTTTCAATCCTT 57.204 34.783 0.00 0.00 0.00 3.36
1021 1038 5.632347 GCAATGTCTGTTTTCAATCCTTCAG 59.368 40.000 0.00 0.00 0.00 3.02
1024 1041 4.821805 TGTCTGTTTTCAATCCTTCAGTCC 59.178 41.667 0.00 0.00 0.00 3.85
1036 1053 3.584406 TCCTTCAGTCCATGACAATGACT 59.416 43.478 0.00 4.80 37.77 3.41
1038 1055 5.426509 TCCTTCAGTCCATGACAATGACTAT 59.573 40.000 9.23 0.00 37.77 2.12
1057 1074 0.464193 TGACGATGACGATACCCCGA 60.464 55.000 0.00 0.00 42.66 5.14
1079 1096 3.601443 ATCCTTCAAGAGGTCGTCAAG 57.399 47.619 0.00 0.00 46.39 3.02
1116 1133 1.150567 CGAAGCAGGAAGGCTCATCG 61.151 60.000 0.00 0.00 45.07 3.84
1128 1145 1.537202 GGCTCATCGGCAAATATCACC 59.463 52.381 0.00 0.00 38.25 4.02
1135 1152 5.469760 TCATCGGCAAATATCACCTATGTTG 59.530 40.000 0.00 0.00 30.72 3.33
1146 1163 2.127708 ACCTATGTTGGGAGCCCTAAG 58.872 52.381 7.16 0.00 36.94 2.18
1239 1256 1.671742 GACCAGCTCAAACCCTCGA 59.328 57.895 0.00 0.00 0.00 4.04
1260 1277 0.689623 CTTCAGGGTCTGTTCAGCCT 59.310 55.000 11.01 4.07 45.64 4.58
1316 1333 8.918202 AACACAGTGGATAAGAGTAAAATGAA 57.082 30.769 5.31 0.00 0.00 2.57
1374 1391 6.622289 TCAGATGATGACAAGCCACTTGCT 62.622 45.833 7.23 0.00 44.43 3.91
1410 1427 6.039382 AGCCTGACACGAAATTAAAGAAAGTT 59.961 34.615 0.00 0.00 0.00 2.66
1412 1429 7.193595 CCTGACACGAAATTAAAGAAAGTTGT 58.806 34.615 0.00 0.00 0.00 3.32
1442 1459 3.567164 GGTGAGAATGCATATGGTTCAGG 59.433 47.826 0.00 0.00 0.00 3.86
1451 1468 3.931468 GCATATGGTTCAGGAGATGATCG 59.069 47.826 4.56 0.00 37.89 3.69
1538 1555 1.388547 TTGTTGAAGACTGCACCACC 58.611 50.000 0.00 0.00 0.00 4.61
1654 1671 4.696899 AGTAAGCCCGTTTTATTGAAGC 57.303 40.909 0.00 0.00 0.00 3.86
1748 1765 2.783135 TGCTGCTCCAAAAAGTAGAGG 58.217 47.619 0.00 0.00 31.30 3.69
1752 1769 4.563786 GCTGCTCCAAAAAGTAGAGGTAGT 60.564 45.833 0.00 0.00 31.30 2.73
1871 1888 1.611977 GTCTAACAACAAGGGGCCAAC 59.388 52.381 4.39 0.00 0.00 3.77
1912 1929 3.119495 CCGGAATTCAGTTAAAAGGCCAG 60.119 47.826 5.01 0.00 0.00 4.85
1951 1971 7.047891 TCAAACAAGTTCAGCTCTTAAGAAGA 58.952 34.615 6.63 2.49 35.87 2.87
2118 2150 6.612049 AGAGTCCTTTATCCGTTAAGAAGGAT 59.388 38.462 6.43 10.69 45.32 3.24
2346 2378 4.880696 GAGGTGATCTCTAAAGCATTTGCT 59.119 41.667 0.00 0.00 45.43 3.91
2347 2379 6.051717 GAGGTGATCTCTAAAGCATTTGCTA 58.948 40.000 5.33 0.00 44.03 3.49
2348 2380 6.709846 GAGGTGATCTCTAAAGCATTTGCTAT 59.290 38.462 5.33 0.00 44.03 2.97
2349 2381 7.228308 GAGGTGATCTCTAAAGCATTTGCTATT 59.772 37.037 5.33 5.54 44.03 1.73
2741 2792 8.717821 TGTTCATACTGTTGTAATCTTGCTAAC 58.282 33.333 0.00 0.00 31.80 2.34
2770 2821 8.589338 GGTGGATTATGACTAGATATTGTGTCT 58.411 37.037 0.00 0.00 0.00 3.41
2972 3161 9.064706 CACTTCTTGCCTTCTTGAATCATATAT 57.935 33.333 0.00 0.00 0.00 0.86
3039 3243 4.867047 CGTTCTCAGTCAGCAATTGATAGT 59.133 41.667 10.34 0.00 38.29 2.12
3168 3461 4.868171 TCCTGATTTCTTGTACATGCGTAC 59.132 41.667 0.00 0.00 46.94 3.67
3181 3474 3.568007 ACATGCGTACCATTTGTGTCTTT 59.432 39.130 0.00 0.00 29.71 2.52
3334 3793 1.813178 GTGAGGGCCTTCAGTTTAAGC 59.187 52.381 19.41 0.20 0.00 3.09
4097 5439 4.376340 ACTATGCTTGCTTTTATGTGGC 57.624 40.909 0.00 0.00 0.00 5.01
4267 5771 9.649167 TCATCAGCATCATTAACATCAGTATAG 57.351 33.333 0.00 0.00 0.00 1.31
4864 6413 3.498397 ACCAGCTTGATACAACGAAACTG 59.502 43.478 0.00 0.00 0.00 3.16
4898 6447 0.613012 GGACTTGATGCCTGGCCTTT 60.613 55.000 17.53 0.20 0.00 3.11
4956 6505 5.864418 ACCTTGGATGCTATCGTAAGTTA 57.136 39.130 0.00 0.00 39.48 2.24
5233 6797 4.150980 TCAAAAGAACGTGTAGCATTACCG 59.849 41.667 0.00 0.00 32.94 4.02
5556 7246 0.467290 AAGGTTGGTCGTGGTTGCAT 60.467 50.000 0.00 0.00 0.00 3.96
5605 7297 4.884247 ACTACTGTCCTGTAAGCACTTTC 58.116 43.478 0.00 0.00 0.00 2.62
5637 7329 0.405585 TTCTTTTCTCCAGGCCCAGG 59.594 55.000 0.00 1.14 0.00 4.45
5639 7331 0.610232 CTTTTCTCCAGGCCCAGGTG 60.610 60.000 11.36 9.30 0.00 4.00
5681 7373 3.222603 GGGCAAAGTGAAGAGAGGAAAA 58.777 45.455 0.00 0.00 0.00 2.29
6220 7975 2.409870 GCTTCCGGGTGAGCCAATG 61.410 63.158 0.00 0.00 36.17 2.82
6260 8015 1.449246 CAGCTTCCAGGCCTTCTCG 60.449 63.158 0.00 0.00 0.00 4.04
6312 8067 3.692791 AGAGCTCGGTGTTTGTTTTTC 57.307 42.857 8.37 0.00 0.00 2.29
6484 8250 9.911788 AGAACTGATGGACATTCATTTTATACT 57.088 29.630 0.00 0.00 0.00 2.12
6494 8260 9.110617 GACATTCATTTTATACTGCATCAATCG 57.889 33.333 0.00 0.00 0.00 3.34
6506 8272 9.822185 ATACTGCATCAATCGCAAATATAGATA 57.178 29.630 0.00 0.00 39.30 1.98
6610 8378 6.109359 GTGATGCTGAGGTGTAAGTTTATCT 58.891 40.000 0.00 0.00 0.00 1.98
6678 8447 1.705186 GGGTATATGCTCCATGGGTGT 59.295 52.381 13.02 0.00 0.00 4.16
6679 8448 2.553028 GGGTATATGCTCCATGGGTGTG 60.553 54.545 13.02 1.25 0.00 3.82
6680 8449 2.154462 GTATATGCTCCATGGGTGTGC 58.846 52.381 13.02 11.89 0.00 4.57
6681 8450 0.535780 ATATGCTCCATGGGTGTGCG 60.536 55.000 13.02 0.00 0.00 5.34
6682 8451 1.909459 TATGCTCCATGGGTGTGCGT 61.909 55.000 13.02 14.42 0.00 5.24
6683 8452 3.434319 GCTCCATGGGTGTGCGTG 61.434 66.667 13.02 0.00 0.00 5.34
6684 8453 2.747460 CTCCATGGGTGTGCGTGG 60.747 66.667 13.02 0.00 0.00 4.94
6729 8498 0.393077 CTGACACCGAGGTCTGGTTT 59.607 55.000 7.72 0.00 37.72 3.27
6753 8522 4.301505 GCAGGTCGATTTGCCTCA 57.698 55.556 11.72 0.00 34.28 3.86
6762 8531 3.125316 GTCGATTTGCCTCATTCGTTTCT 59.875 43.478 0.00 0.00 33.52 2.52
6770 8539 4.464951 TGCCTCATTCGTTTCTTCCTACTA 59.535 41.667 0.00 0.00 0.00 1.82
6771 8540 5.128827 TGCCTCATTCGTTTCTTCCTACTAT 59.871 40.000 0.00 0.00 0.00 2.12
6772 8541 6.322969 TGCCTCATTCGTTTCTTCCTACTATA 59.677 38.462 0.00 0.00 0.00 1.31
6773 8542 7.147794 TGCCTCATTCGTTTCTTCCTACTATAA 60.148 37.037 0.00 0.00 0.00 0.98
6774 8543 7.382759 GCCTCATTCGTTTCTTCCTACTATAAG 59.617 40.741 0.00 0.00 0.00 1.73
6775 8544 7.868415 CCTCATTCGTTTCTTCCTACTATAAGG 59.132 40.741 0.00 0.00 38.06 2.69
6776 8545 7.208080 TCATTCGTTTCTTCCTACTATAAGGC 58.792 38.462 0.00 0.00 36.51 4.35
6777 8546 5.526506 TCGTTTCTTCCTACTATAAGGCC 57.473 43.478 0.00 0.00 36.51 5.19
6778 8547 4.957954 TCGTTTCTTCCTACTATAAGGCCA 59.042 41.667 5.01 0.00 36.51 5.36
6779 8548 5.422970 TCGTTTCTTCCTACTATAAGGCCAA 59.577 40.000 5.01 0.00 36.51 4.52
6780 8549 5.522824 CGTTTCTTCCTACTATAAGGCCAAC 59.477 44.000 5.01 0.00 36.51 3.77
6781 8550 6.629739 CGTTTCTTCCTACTATAAGGCCAACT 60.630 42.308 5.01 0.00 36.51 3.16
6782 8551 6.481434 TTCTTCCTACTATAAGGCCAACTC 57.519 41.667 5.01 0.00 36.51 3.01
6783 8552 4.583489 TCTTCCTACTATAAGGCCAACTCG 59.417 45.833 5.01 0.00 36.51 4.18
6784 8553 4.174704 TCCTACTATAAGGCCAACTCGA 57.825 45.455 5.01 0.00 36.51 4.04
6785 8554 3.887716 TCCTACTATAAGGCCAACTCGAC 59.112 47.826 5.01 0.00 36.51 4.20
6786 8555 3.005578 CCTACTATAAGGCCAACTCGACC 59.994 52.174 5.01 0.00 0.00 4.79
6787 8556 1.407979 ACTATAAGGCCAACTCGACCG 59.592 52.381 5.01 0.00 0.00 4.79
6788 8557 0.103572 TATAAGGCCAACTCGACCGC 59.896 55.000 5.01 0.00 0.00 5.68
6789 8558 2.901051 ATAAGGCCAACTCGACCGCG 62.901 60.000 5.01 0.00 39.35 6.46
6793 8562 3.103911 CCAACTCGACCGCGTGAC 61.104 66.667 4.92 0.00 38.98 3.67
6794 8563 3.103911 CAACTCGACCGCGTGACC 61.104 66.667 4.92 0.00 38.98 4.02
6795 8564 4.353437 AACTCGACCGCGTGACCC 62.353 66.667 4.92 0.00 38.98 4.46
6799 8568 4.973055 CGACCGCGTGACCCCAAA 62.973 66.667 4.92 0.00 0.00 3.28
6800 8569 3.351416 GACCGCGTGACCCCAAAC 61.351 66.667 4.92 0.00 0.00 2.93
6803 8572 4.973055 CGCGTGACCCCAAACGGA 62.973 66.667 0.00 0.00 40.12 4.69
6804 8573 3.351416 GCGTGACCCCAAACGGAC 61.351 66.667 0.00 0.00 40.12 4.79
6805 8574 3.039588 CGTGACCCCAAACGGACG 61.040 66.667 0.00 0.00 36.17 4.79
6806 8575 2.109593 GTGACCCCAAACGGACGT 59.890 61.111 0.00 0.00 0.00 4.34
6807 8576 1.524393 GTGACCCCAAACGGACGTT 60.524 57.895 3.99 3.99 40.45 3.99
6809 8578 0.814812 TGACCCCAAACGGACGTTTC 60.815 55.000 18.68 9.14 45.32 2.78
6810 8579 1.834458 GACCCCAAACGGACGTTTCG 61.834 60.000 18.68 13.02 45.32 3.46
6811 8580 1.888638 CCCCAAACGGACGTTTCGT 60.889 57.895 18.68 11.23 45.32 3.85
6817 8586 2.898181 AACGGACGTTTCGTTTTGTT 57.102 40.000 19.83 3.57 46.85 2.83
6818 8587 2.898181 ACGGACGTTTCGTTTTGTTT 57.102 40.000 11.23 0.00 41.37 2.83
6819 8588 2.507866 ACGGACGTTTCGTTTTGTTTG 58.492 42.857 11.23 0.00 41.37 2.93
6820 8589 1.841342 CGGACGTTTCGTTTTGTTTGG 59.159 47.619 0.00 0.00 41.37 3.28
6821 8590 2.186891 GGACGTTTCGTTTTGTTTGGG 58.813 47.619 0.00 0.00 41.37 4.12
6822 8591 2.415759 GGACGTTTCGTTTTGTTTGGGT 60.416 45.455 0.00 0.00 41.37 4.51
6823 8592 3.181502 GGACGTTTCGTTTTGTTTGGGTA 60.182 43.478 0.00 0.00 41.37 3.69
6824 8593 4.497842 GGACGTTTCGTTTTGTTTGGGTAT 60.498 41.667 0.00 0.00 41.37 2.73
6825 8594 4.996344 ACGTTTCGTTTTGTTTGGGTATT 58.004 34.783 0.00 0.00 36.35 1.89
6826 8595 4.799428 ACGTTTCGTTTTGTTTGGGTATTG 59.201 37.500 0.00 0.00 36.35 1.90
6827 8596 4.799428 CGTTTCGTTTTGTTTGGGTATTGT 59.201 37.500 0.00 0.00 0.00 2.71
6828 8597 5.052238 CGTTTCGTTTTGTTTGGGTATTGTC 60.052 40.000 0.00 0.00 0.00 3.18
6829 8598 5.838531 TTCGTTTTGTTTGGGTATTGTCT 57.161 34.783 0.00 0.00 0.00 3.41
6830 8599 5.176407 TCGTTTTGTTTGGGTATTGTCTG 57.824 39.130 0.00 0.00 0.00 3.51
6831 8600 4.641094 TCGTTTTGTTTGGGTATTGTCTGT 59.359 37.500 0.00 0.00 0.00 3.41
6832 8601 5.125739 TCGTTTTGTTTGGGTATTGTCTGTT 59.874 36.000 0.00 0.00 0.00 3.16
6833 8602 5.808030 CGTTTTGTTTGGGTATTGTCTGTTT 59.192 36.000 0.00 0.00 0.00 2.83
6834 8603 6.237701 CGTTTTGTTTGGGTATTGTCTGTTTG 60.238 38.462 0.00 0.00 0.00 2.93
6835 8604 4.927978 TGTTTGGGTATTGTCTGTTTGG 57.072 40.909 0.00 0.00 0.00 3.28
6836 8605 3.639094 TGTTTGGGTATTGTCTGTTTGGG 59.361 43.478 0.00 0.00 0.00 4.12
6837 8606 2.595750 TGGGTATTGTCTGTTTGGGG 57.404 50.000 0.00 0.00 0.00 4.96
6838 8607 1.783979 TGGGTATTGTCTGTTTGGGGT 59.216 47.619 0.00 0.00 0.00 4.95
6839 8608 2.224917 TGGGTATTGTCTGTTTGGGGTC 60.225 50.000 0.00 0.00 0.00 4.46
6840 8609 2.081462 GGTATTGTCTGTTTGGGGTCG 58.919 52.381 0.00 0.00 0.00 4.79
6841 8610 1.467342 GTATTGTCTGTTTGGGGTCGC 59.533 52.381 0.00 0.00 0.00 5.19
6842 8611 1.234615 ATTGTCTGTTTGGGGTCGCG 61.235 55.000 0.00 0.00 0.00 5.87
6843 8612 3.723348 GTCTGTTTGGGGTCGCGC 61.723 66.667 0.00 0.00 0.00 6.86
6844 8613 4.243008 TCTGTTTGGGGTCGCGCA 62.243 61.111 8.75 0.00 0.00 6.09
6845 8614 3.055719 CTGTTTGGGGTCGCGCAT 61.056 61.111 8.75 0.00 0.00 4.73
6846 8615 3.039202 CTGTTTGGGGTCGCGCATC 62.039 63.158 8.75 0.00 0.00 3.91
6847 8616 2.746277 GTTTGGGGTCGCGCATCT 60.746 61.111 8.75 0.00 0.00 2.90
6848 8617 2.435938 TTTGGGGTCGCGCATCTC 60.436 61.111 8.75 0.00 0.00 2.75
6849 8618 3.247056 TTTGGGGTCGCGCATCTCA 62.247 57.895 8.75 0.00 0.00 3.27
6850 8619 2.739849 TTTGGGGTCGCGCATCTCAA 62.740 55.000 8.75 4.63 0.00 3.02
6851 8620 2.435938 GGGGTCGCGCATCTCAAA 60.436 61.111 8.75 0.00 0.00 2.69
6852 8621 2.750888 GGGGTCGCGCATCTCAAAC 61.751 63.158 8.75 0.00 0.00 2.93
6853 8622 2.395690 GGTCGCGCATCTCAAACG 59.604 61.111 8.75 0.00 0.00 3.60
6854 8623 2.395690 GTCGCGCATCTCAAACGG 59.604 61.111 8.75 0.00 0.00 4.44
6855 8624 2.092291 GTCGCGCATCTCAAACGGA 61.092 57.895 8.75 0.00 0.00 4.69
6856 8625 2.092291 TCGCGCATCTCAAACGGAC 61.092 57.895 8.75 0.00 0.00 4.79
6857 8626 2.395690 GCGCATCTCAAACGGACG 59.604 61.111 0.30 0.00 0.00 4.79
6858 8627 2.380410 GCGCATCTCAAACGGACGT 61.380 57.895 0.30 0.00 0.00 4.34
6859 8628 1.702299 CGCATCTCAAACGGACGTC 59.298 57.895 7.13 7.13 0.00 4.34
6860 8629 0.732880 CGCATCTCAAACGGACGTCT 60.733 55.000 16.46 0.00 0.00 4.18
6861 8630 0.716108 GCATCTCAAACGGACGTCTG 59.284 55.000 22.81 22.81 0.00 3.51
6862 8631 1.935300 GCATCTCAAACGGACGTCTGT 60.935 52.381 24.31 24.31 36.96 3.41
6863 8632 2.404215 CATCTCAAACGGACGTCTGTT 58.596 47.619 32.15 32.15 46.62 3.16
6870 8639 2.817538 ACGGACGTCTGTTTTGTTTG 57.182 45.000 24.31 0.17 29.59 2.93
6871 8640 1.399089 ACGGACGTCTGTTTTGTTTGG 59.601 47.619 24.31 0.00 29.59 3.28
6872 8641 1.666700 CGGACGTCTGTTTTGTTTGGA 59.333 47.619 16.54 0.00 0.00 3.53
6873 8642 2.289547 CGGACGTCTGTTTTGTTTGGAT 59.710 45.455 16.54 0.00 0.00 3.41
6874 8643 3.242936 CGGACGTCTGTTTTGTTTGGATT 60.243 43.478 16.54 0.00 0.00 3.01
6875 8644 4.678622 GGACGTCTGTTTTGTTTGGATTT 58.321 39.130 16.46 0.00 0.00 2.17
6876 8645 5.106442 GGACGTCTGTTTTGTTTGGATTTT 58.894 37.500 16.46 0.00 0.00 1.82
6877 8646 6.267070 GGACGTCTGTTTTGTTTGGATTTTA 58.733 36.000 16.46 0.00 0.00 1.52
6878 8647 6.921307 GGACGTCTGTTTTGTTTGGATTTTAT 59.079 34.615 16.46 0.00 0.00 1.40
6879 8648 7.114388 GGACGTCTGTTTTGTTTGGATTTTATC 59.886 37.037 16.46 0.00 0.00 1.75
6894 8663 7.761038 GGATTTTATCCGTTTGAATAGGGAT 57.239 36.000 0.00 0.00 43.31 3.85
6895 8664 8.178313 GGATTTTATCCGTTTGAATAGGGATT 57.822 34.615 3.51 0.00 41.62 3.01
6896 8665 8.638873 GGATTTTATCCGTTTGAATAGGGATTT 58.361 33.333 3.51 0.00 41.62 2.17
6897 8666 9.463443 GATTTTATCCGTTTGAATAGGGATTTG 57.537 33.333 3.51 0.00 41.62 2.32
6898 8667 6.952773 TTATCCGTTTGAATAGGGATTTGG 57.047 37.500 3.51 0.00 41.62 3.28
6899 8668 3.626930 TCCGTTTGAATAGGGATTTGGG 58.373 45.455 0.00 0.00 0.00 4.12
6900 8669 2.693074 CCGTTTGAATAGGGATTTGGGG 59.307 50.000 0.00 0.00 0.00 4.96
6901 8670 3.361786 CGTTTGAATAGGGATTTGGGGT 58.638 45.455 0.00 0.00 0.00 4.95
6902 8671 3.380320 CGTTTGAATAGGGATTTGGGGTC 59.620 47.826 0.00 0.00 0.00 4.46
6903 8672 3.290948 TTGAATAGGGATTTGGGGTCG 57.709 47.619 0.00 0.00 0.00 4.79
6904 8673 2.201830 TGAATAGGGATTTGGGGTCGT 58.798 47.619 0.00 0.00 0.00 4.34
6905 8674 2.092646 TGAATAGGGATTTGGGGTCGTG 60.093 50.000 0.00 0.00 0.00 4.35
6906 8675 1.591768 ATAGGGATTTGGGGTCGTGT 58.408 50.000 0.00 0.00 0.00 4.49
6907 8676 0.906775 TAGGGATTTGGGGTCGTGTC 59.093 55.000 0.00 0.00 0.00 3.67
6908 8677 0.840722 AGGGATTTGGGGTCGTGTCT 60.841 55.000 0.00 0.00 0.00 3.41
6909 8678 0.676782 GGGATTTGGGGTCGTGTCTG 60.677 60.000 0.00 0.00 0.00 3.51
6910 8679 0.036306 GGATTTGGGGTCGTGTCTGT 59.964 55.000 0.00 0.00 0.00 3.41
6911 8680 1.156736 GATTTGGGGTCGTGTCTGTG 58.843 55.000 0.00 0.00 0.00 3.66
6912 8681 0.889186 ATTTGGGGTCGTGTCTGTGC 60.889 55.000 0.00 0.00 0.00 4.57
6913 8682 3.800685 TTGGGGTCGTGTCTGTGCG 62.801 63.158 0.00 0.00 0.00 5.34
6914 8683 4.295119 GGGGTCGTGTCTGTGCGT 62.295 66.667 0.00 0.00 0.00 5.24
6915 8684 2.646719 GGGTCGTGTCTGTGCGTA 59.353 61.111 0.00 0.00 0.00 4.42
6916 8685 1.214589 GGGTCGTGTCTGTGCGTAT 59.785 57.895 0.00 0.00 0.00 3.06
6917 8686 0.801067 GGGTCGTGTCTGTGCGTATC 60.801 60.000 0.00 0.00 0.00 2.24
6918 8687 0.801067 GGTCGTGTCTGTGCGTATCC 60.801 60.000 0.00 0.00 0.00 2.59
6919 8688 0.170561 GTCGTGTCTGTGCGTATCCT 59.829 55.000 0.00 0.00 0.00 3.24
6920 8689 0.170339 TCGTGTCTGTGCGTATCCTG 59.830 55.000 0.00 0.00 0.00 3.86
6921 8690 0.802222 CGTGTCTGTGCGTATCCTGG 60.802 60.000 0.00 0.00 0.00 4.45
6922 8691 0.460284 GTGTCTGTGCGTATCCTGGG 60.460 60.000 0.00 0.00 0.00 4.45
6923 8692 0.613572 TGTCTGTGCGTATCCTGGGA 60.614 55.000 0.00 0.00 0.00 4.37
6924 8693 0.753262 GTCTGTGCGTATCCTGGGAT 59.247 55.000 7.33 7.33 38.54 3.85
6925 8694 0.752658 TCTGTGCGTATCCTGGGATG 59.247 55.000 11.98 0.00 36.17 3.51
6926 8695 0.882042 CTGTGCGTATCCTGGGATGC 60.882 60.000 11.98 9.65 36.17 3.91
6930 8699 4.779475 GTATCCTGGGATGCGGTG 57.221 61.111 11.98 0.00 36.17 4.94
6931 8700 1.071471 GTATCCTGGGATGCGGTGG 59.929 63.158 11.98 0.00 36.17 4.61
6932 8701 1.383943 TATCCTGGGATGCGGTGGT 60.384 57.895 11.98 0.00 36.17 4.16
6933 8702 1.407656 TATCCTGGGATGCGGTGGTC 61.408 60.000 11.98 0.00 36.17 4.02
6934 8703 4.838152 CCTGGGATGCGGTGGTCG 62.838 72.222 0.00 0.00 42.76 4.79
6935 8704 4.082523 CTGGGATGCGGTGGTCGT 62.083 66.667 0.00 0.00 41.72 4.34
6936 8705 4.386951 TGGGATGCGGTGGTCGTG 62.387 66.667 0.00 0.00 41.72 4.35
6961 8730 2.436646 CACGCGGCCTCATCCTTT 60.437 61.111 12.47 0.00 0.00 3.11
6962 8731 2.040544 CACGCGGCCTCATCCTTTT 61.041 57.895 12.47 0.00 0.00 2.27
6963 8732 1.303317 ACGCGGCCTCATCCTTTTT 60.303 52.632 12.47 0.00 0.00 1.94
6964 8733 1.137404 CGCGGCCTCATCCTTTTTG 59.863 57.895 0.00 0.00 0.00 2.44
6965 8734 1.153765 GCGGCCTCATCCTTTTTGC 60.154 57.895 0.00 0.00 0.00 3.68
6966 8735 1.598701 GCGGCCTCATCCTTTTTGCT 61.599 55.000 0.00 0.00 0.00 3.91
6967 8736 0.453390 CGGCCTCATCCTTTTTGCTC 59.547 55.000 0.00 0.00 0.00 4.26
6968 8737 0.820226 GGCCTCATCCTTTTTGCTCC 59.180 55.000 0.00 0.00 0.00 4.70
6969 8738 1.549203 GCCTCATCCTTTTTGCTCCA 58.451 50.000 0.00 0.00 0.00 3.86
6970 8739 2.105766 GCCTCATCCTTTTTGCTCCAT 58.894 47.619 0.00 0.00 0.00 3.41
6971 8740 2.100418 GCCTCATCCTTTTTGCTCCATC 59.900 50.000 0.00 0.00 0.00 3.51
6972 8741 3.629087 CCTCATCCTTTTTGCTCCATCT 58.371 45.455 0.00 0.00 0.00 2.90
6973 8742 4.021916 CCTCATCCTTTTTGCTCCATCTT 58.978 43.478 0.00 0.00 0.00 2.40
6974 8743 4.142227 CCTCATCCTTTTTGCTCCATCTTG 60.142 45.833 0.00 0.00 0.00 3.02
6975 8744 4.410099 TCATCCTTTTTGCTCCATCTTGT 58.590 39.130 0.00 0.00 0.00 3.16
6976 8745 4.460382 TCATCCTTTTTGCTCCATCTTGTC 59.540 41.667 0.00 0.00 0.00 3.18
6977 8746 3.157087 TCCTTTTTGCTCCATCTTGTCC 58.843 45.455 0.00 0.00 0.00 4.02
6978 8747 2.095059 CCTTTTTGCTCCATCTTGTCCG 60.095 50.000 0.00 0.00 0.00 4.79
6979 8748 2.270352 TTTTGCTCCATCTTGTCCGT 57.730 45.000 0.00 0.00 0.00 4.69
6980 8749 1.808411 TTTGCTCCATCTTGTCCGTC 58.192 50.000 0.00 0.00 0.00 4.79
6981 8750 0.389817 TTGCTCCATCTTGTCCGTCG 60.390 55.000 0.00 0.00 0.00 5.12
6982 8751 2.167861 GCTCCATCTTGTCCGTCGC 61.168 63.158 0.00 0.00 0.00 5.19
6983 8752 1.874019 CTCCATCTTGTCCGTCGCG 60.874 63.158 0.00 0.00 0.00 5.87
7013 8782 8.866970 AAAATGCCCATATTTTCATCAAAACT 57.133 26.923 0.00 0.00 35.88 2.66
7014 8783 9.956640 AAAATGCCCATATTTTCATCAAAACTA 57.043 25.926 0.00 0.00 35.88 2.24
7015 8784 9.603921 AAATGCCCATATTTTCATCAAAACTAG 57.396 29.630 0.00 0.00 34.24 2.57
7016 8785 7.716799 TGCCCATATTTTCATCAAAACTAGT 57.283 32.000 0.00 0.00 34.24 2.57
7017 8786 8.133024 TGCCCATATTTTCATCAAAACTAGTT 57.867 30.769 1.12 1.12 34.24 2.24
7018 8787 8.592809 TGCCCATATTTTCATCAAAACTAGTTT 58.407 29.630 15.22 15.22 34.24 2.66
7019 8788 9.435688 GCCCATATTTTCATCAAAACTAGTTTT 57.564 29.630 24.66 24.66 42.91 2.43
7027 8796 9.589111 TTTCATCAAAACTAGTTTTTACAACCC 57.411 29.630 27.12 0.00 40.45 4.11
7028 8797 8.294954 TCATCAAAACTAGTTTTTACAACCCA 57.705 30.769 27.12 6.95 40.45 4.51
7029 8798 8.750298 TCATCAAAACTAGTTTTTACAACCCAA 58.250 29.630 27.12 8.09 40.45 4.12
7030 8799 9.372369 CATCAAAACTAGTTTTTACAACCCAAA 57.628 29.630 27.12 6.82 40.45 3.28
7032 8801 9.372369 TCAAAACTAGTTTTTACAACCCAAATG 57.628 29.630 27.12 14.20 40.45 2.32
7033 8802 9.157104 CAAAACTAGTTTTTACAACCCAAATGT 57.843 29.630 27.12 1.96 40.45 2.71
7034 8803 9.727859 AAAACTAGTTTTTACAACCCAAATGTT 57.272 25.926 24.66 0.15 39.52 2.71
7035 8804 9.727859 AAACTAGTTTTTACAACCCAAATGTTT 57.272 25.926 15.22 0.00 32.27 2.83
7036 8805 8.710835 ACTAGTTTTTACAACCCAAATGTTTG 57.289 30.769 0.00 0.00 37.90 2.93
7037 8806 8.315482 ACTAGTTTTTACAACCCAAATGTTTGT 58.685 29.630 4.92 0.00 36.45 2.83
7038 8807 7.603963 AGTTTTTACAACCCAAATGTTTGTC 57.396 32.000 4.92 0.00 36.45 3.18
7039 8808 7.390823 AGTTTTTACAACCCAAATGTTTGTCT 58.609 30.769 4.92 0.00 36.45 3.41
7040 8809 7.333174 AGTTTTTACAACCCAAATGTTTGTCTG 59.667 33.333 4.92 2.20 36.45 3.51
7041 8810 6.531503 TTTACAACCCAAATGTTTGTCTGA 57.468 33.333 4.92 0.00 36.45 3.27
7042 8811 6.531503 TTACAACCCAAATGTTTGTCTGAA 57.468 33.333 4.92 0.00 36.45 3.02
7043 8812 5.413309 ACAACCCAAATGTTTGTCTGAAA 57.587 34.783 4.92 0.00 36.45 2.69
7044 8813 5.799213 ACAACCCAAATGTTTGTCTGAAAA 58.201 33.333 4.92 0.00 36.45 2.29
7045 8814 6.413892 ACAACCCAAATGTTTGTCTGAAAAT 58.586 32.000 4.92 0.00 36.45 1.82
7046 8815 6.883756 ACAACCCAAATGTTTGTCTGAAAATT 59.116 30.769 4.92 0.00 36.45 1.82
7047 8816 8.043710 ACAACCCAAATGTTTGTCTGAAAATTA 58.956 29.630 4.92 0.00 36.45 1.40
7048 8817 8.887717 CAACCCAAATGTTTGTCTGAAAATTAA 58.112 29.630 4.92 0.00 36.45 1.40
7049 8818 9.454859 AACCCAAATGTTTGTCTGAAAATTAAA 57.545 25.926 4.92 0.00 36.45 1.52
7050 8819 9.454859 ACCCAAATGTTTGTCTGAAAATTAAAA 57.545 25.926 4.92 0.00 36.45 1.52
7076 8845 9.974980 ATAGTTTTACAACCAAATCGAAATTGT 57.025 25.926 11.83 9.75 37.30 2.71
7077 8846 8.347729 AGTTTTACAACCAAATCGAAATTGTC 57.652 30.769 11.83 0.00 35.26 3.18
7078 8847 8.194769 AGTTTTACAACCAAATCGAAATTGTCT 58.805 29.630 11.83 0.97 35.26 3.41
7079 8848 9.453325 GTTTTACAACCAAATCGAAATTGTCTA 57.547 29.630 11.83 0.12 35.26 2.59
7080 8849 9.453325 TTTTACAACCAAATCGAAATTGTCTAC 57.547 29.630 11.83 0.00 35.26 2.59
7081 8850 6.627395 ACAACCAAATCGAAATTGTCTACA 57.373 33.333 11.83 0.00 0.00 2.74
7082 8851 6.435428 ACAACCAAATCGAAATTGTCTACAC 58.565 36.000 11.83 0.00 0.00 2.90
7083 8852 6.262273 ACAACCAAATCGAAATTGTCTACACT 59.738 34.615 11.83 0.00 0.00 3.55
7084 8853 6.241207 ACCAAATCGAAATTGTCTACACTG 57.759 37.500 11.83 0.00 0.00 3.66
7085 8854 5.995282 ACCAAATCGAAATTGTCTACACTGA 59.005 36.000 11.83 0.00 0.00 3.41
7086 8855 6.485313 ACCAAATCGAAATTGTCTACACTGAA 59.515 34.615 11.83 0.00 0.00 3.02
7087 8856 7.174946 ACCAAATCGAAATTGTCTACACTGAAT 59.825 33.333 11.83 0.00 0.00 2.57
7088 8857 8.664798 CCAAATCGAAATTGTCTACACTGAATA 58.335 33.333 11.83 0.00 0.00 1.75
7099 8868 8.958119 TGTCTACACTGAATATAAAATGGACC 57.042 34.615 0.00 0.00 0.00 4.46
7100 8869 8.544622 TGTCTACACTGAATATAAAATGGACCA 58.455 33.333 0.00 0.00 0.00 4.02
7101 8870 9.391006 GTCTACACTGAATATAAAATGGACCAA 57.609 33.333 0.00 0.00 0.00 3.67
7105 8874 9.693739 ACACTGAATATAAAATGGACCAATACA 57.306 29.630 0.00 0.00 0.00 2.29
7129 8898 1.265236 TTGGTTGCCAATGTGATCCC 58.735 50.000 0.00 0.00 38.75 3.85
7130 8899 0.409092 TGGTTGCCAATGTGATCCCT 59.591 50.000 0.00 0.00 0.00 4.20
7131 8900 1.106285 GGTTGCCAATGTGATCCCTC 58.894 55.000 0.00 0.00 0.00 4.30
7132 8901 1.616725 GGTTGCCAATGTGATCCCTCA 60.617 52.381 0.00 0.00 0.00 3.86
7139 8908 4.504132 GTGATCCCTCACGTGCTC 57.496 61.111 11.67 3.05 42.24 4.26
7140 8909 1.893786 GTGATCCCTCACGTGCTCT 59.106 57.895 11.67 0.00 42.24 4.09
7141 8910 1.103803 GTGATCCCTCACGTGCTCTA 58.896 55.000 11.67 0.00 42.24 2.43
7142 8911 1.103803 TGATCCCTCACGTGCTCTAC 58.896 55.000 11.67 1.27 0.00 2.59
7143 8912 0.386113 GATCCCTCACGTGCTCTACC 59.614 60.000 11.67 0.00 0.00 3.18
7144 8913 0.324368 ATCCCTCACGTGCTCTACCA 60.324 55.000 11.67 0.00 0.00 3.25
7145 8914 0.541063 TCCCTCACGTGCTCTACCAA 60.541 55.000 11.67 0.00 0.00 3.67
7146 8915 0.108615 CCCTCACGTGCTCTACCAAG 60.109 60.000 11.67 0.00 0.00 3.61
7147 8916 0.603569 CCTCACGTGCTCTACCAAGT 59.396 55.000 11.67 0.00 0.00 3.16
7148 8917 1.402984 CCTCACGTGCTCTACCAAGTC 60.403 57.143 11.67 0.00 0.00 3.01
7149 8918 1.269723 CTCACGTGCTCTACCAAGTCA 59.730 52.381 11.67 0.00 0.00 3.41
7150 8919 1.893137 TCACGTGCTCTACCAAGTCAT 59.107 47.619 11.67 0.00 0.00 3.06
7151 8920 2.299013 TCACGTGCTCTACCAAGTCATT 59.701 45.455 11.67 0.00 0.00 2.57
7152 8921 3.067106 CACGTGCTCTACCAAGTCATTT 58.933 45.455 0.82 0.00 0.00 2.32
7153 8922 3.498397 CACGTGCTCTACCAAGTCATTTT 59.502 43.478 0.82 0.00 0.00 1.82
7154 8923 3.498397 ACGTGCTCTACCAAGTCATTTTG 59.502 43.478 0.00 0.00 0.00 2.44
7155 8924 3.745975 CGTGCTCTACCAAGTCATTTTGA 59.254 43.478 0.00 0.00 0.00 2.69
7156 8925 4.213270 CGTGCTCTACCAAGTCATTTTGAA 59.787 41.667 0.00 0.00 0.00 2.69
7157 8926 5.615544 CGTGCTCTACCAAGTCATTTTGAAG 60.616 44.000 0.00 0.00 0.00 3.02
7158 8927 5.470098 GTGCTCTACCAAGTCATTTTGAAGA 59.530 40.000 0.00 0.00 0.00 2.87
7159 8928 6.150140 GTGCTCTACCAAGTCATTTTGAAGAT 59.850 38.462 0.00 0.00 0.00 2.40
7160 8929 6.716628 TGCTCTACCAAGTCATTTTGAAGATT 59.283 34.615 0.00 0.00 0.00 2.40
7161 8930 7.094634 TGCTCTACCAAGTCATTTTGAAGATTC 60.095 37.037 0.00 0.00 0.00 2.52
7162 8931 7.094634 GCTCTACCAAGTCATTTTGAAGATTCA 60.095 37.037 0.00 0.00 34.92 2.57
7163 8932 8.690203 TCTACCAAGTCATTTTGAAGATTCAA 57.310 30.769 3.91 3.91 44.78 2.69
7174 8943 4.771590 TGAAGATTCAAATGAGTGTGCC 57.228 40.909 0.00 0.00 33.55 5.01
7175 8944 4.143543 TGAAGATTCAAATGAGTGTGCCA 58.856 39.130 0.00 0.00 33.55 4.92
7176 8945 4.583907 TGAAGATTCAAATGAGTGTGCCAA 59.416 37.500 0.00 0.00 33.55 4.52
7177 8946 5.244402 TGAAGATTCAAATGAGTGTGCCAAT 59.756 36.000 0.00 0.00 33.55 3.16
7178 8947 5.320549 AGATTCAAATGAGTGTGCCAATC 57.679 39.130 0.00 0.00 0.00 2.67
7179 8948 4.768448 AGATTCAAATGAGTGTGCCAATCA 59.232 37.500 7.59 7.59 42.48 2.57
7180 8949 3.921119 TCAAATGAGTGTGCCAATCAC 57.079 42.857 7.35 0.00 41.15 3.06
7188 8957 2.470156 GTGCCAATCACGCATCTCA 58.530 52.632 0.00 0.00 38.76 3.27
7189 8958 0.097674 GTGCCAATCACGCATCTCAC 59.902 55.000 0.00 0.00 38.76 3.51
7190 8959 1.349627 GCCAATCACGCATCTCACG 59.650 57.895 0.00 0.00 0.00 4.35
7191 8960 2.009108 CCAATCACGCATCTCACGG 58.991 57.895 0.00 0.00 34.00 4.94
7192 8961 0.740868 CCAATCACGCATCTCACGGT 60.741 55.000 0.00 0.00 34.00 4.83
7193 8962 0.371301 CAATCACGCATCTCACGGTG 59.629 55.000 0.56 0.56 34.00 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 4.289379 CGATGCGTGCGATGCAGG 62.289 66.667 7.09 7.09 44.19 4.85
133 134 1.752084 GCTTCAGGATTTAGCTGGGGG 60.752 57.143 0.00 0.00 32.26 5.40
139 140 3.387699 AGAGAGGAGCTTCAGGATTTAGC 59.612 47.826 0.00 0.00 35.16 3.09
143 144 3.706086 GAGAAGAGAGGAGCTTCAGGATT 59.294 47.826 0.00 0.00 43.19 3.01
151 153 1.076339 CGGGGAGAAGAGAGGAGCT 60.076 63.158 0.00 0.00 0.00 4.09
154 156 2.042843 GGCGGGGAGAAGAGAGGA 60.043 66.667 0.00 0.00 0.00 3.71
155 157 2.905935 TACGGCGGGGAGAAGAGAGG 62.906 65.000 13.24 0.00 0.00 3.69
162 164 2.363276 ACACATACGGCGGGGAGA 60.363 61.111 13.24 0.00 0.00 3.71
227 229 2.063378 GGTGGGGAGCAGAGAGAGG 61.063 68.421 0.00 0.00 0.00 3.69
321 325 4.670735 GCTCGCTCGTATTTCTATCTCTCC 60.671 50.000 0.00 0.00 0.00 3.71
454 464 1.076632 AGGAGACAGAGTAGCCGGG 60.077 63.158 2.18 0.00 0.00 5.73
538 548 2.579738 GAGAGACGGGGAAGGTGC 59.420 66.667 0.00 0.00 0.00 5.01
540 550 3.069318 GCGAGAGACGGGGAAGGT 61.069 66.667 0.00 0.00 42.83 3.50
654 668 3.149981 GCTAAGAAACAGAAACCAGCCT 58.850 45.455 0.00 0.00 0.00 4.58
731 745 2.530497 GCACGACGCAACAAGACCA 61.530 57.895 0.00 0.00 41.79 4.02
784 800 2.745281 CAGATACTAGCGGCCTAGAGAC 59.255 54.545 14.45 6.87 43.07 3.36
854 871 4.960938 TCACGGCATCTGATAGCTAAAAT 58.039 39.130 0.00 0.00 0.00 1.82
855 872 4.400529 TCACGGCATCTGATAGCTAAAA 57.599 40.909 0.00 0.00 0.00 1.52
863 880 0.659427 CGCAAATCACGGCATCTGAT 59.341 50.000 0.00 0.00 0.00 2.90
884 901 7.719193 TGATGAACAAGTGGAAGAATGAACTAA 59.281 33.333 0.00 0.00 0.00 2.24
901 918 2.936919 AGACTGCAGGTGATGAACAA 57.063 45.000 19.93 0.00 0.00 2.83
902 919 2.369860 AGAAGACTGCAGGTGATGAACA 59.630 45.455 19.93 0.00 0.00 3.18
919 936 3.189287 GCACAGTTCACCCATGTAAGAAG 59.811 47.826 0.00 0.00 0.00 2.85
928 945 1.077140 TGCAAGCACAGTTCACCCA 60.077 52.632 0.00 0.00 0.00 4.51
951 968 4.464008 GATGGAATAGACCAATTCAGCCA 58.536 43.478 0.00 0.00 43.47 4.75
954 971 4.067896 CCCGATGGAATAGACCAATTCAG 58.932 47.826 0.00 0.00 43.47 3.02
991 1008 4.572985 TGAAAACAGACATTGCTTCCTG 57.427 40.909 0.00 0.00 0.00 3.86
1008 1025 4.984295 TGTCATGGACTGAAGGATTGAAA 58.016 39.130 0.00 0.00 35.07 2.69
1016 1033 6.257411 GTCATAGTCATTGTCATGGACTGAAG 59.743 42.308 14.13 6.67 35.07 3.02
1018 1035 5.664457 GTCATAGTCATTGTCATGGACTGA 58.336 41.667 14.13 5.27 33.15 3.41
1021 1038 4.682787 TCGTCATAGTCATTGTCATGGAC 58.317 43.478 0.00 0.00 0.00 4.02
1024 1041 5.108103 CGTCATCGTCATAGTCATTGTCATG 60.108 44.000 0.00 0.00 0.00 3.07
1036 1053 1.808343 CGGGGTATCGTCATCGTCATA 59.192 52.381 0.00 0.00 38.33 2.15
1038 1055 0.464193 TCGGGGTATCGTCATCGTCA 60.464 55.000 0.00 0.00 38.33 4.35
1116 1133 4.469657 TCCCAACATAGGTGATATTTGCC 58.530 43.478 0.00 0.00 0.00 4.52
1128 1145 2.938956 CCTTAGGGCTCCCAACATAG 57.061 55.000 7.82 0.00 38.92 2.23
1151 1168 0.530211 CCTCTGCTGATTCGAGGCTG 60.530 60.000 0.00 0.00 38.05 4.85
1152 1169 0.685785 TCCTCTGCTGATTCGAGGCT 60.686 55.000 0.00 0.00 43.16 4.58
1270 1287 6.362820 GTGTTACTCTTTTGACTCCGTTCTAG 59.637 42.308 0.00 0.00 0.00 2.43
1278 1295 5.357257 TCCACTGTGTTACTCTTTTGACTC 58.643 41.667 7.08 0.00 0.00 3.36
1330 1347 5.624159 TGAATCATCTGACTTGTCACCTTT 58.376 37.500 0.00 0.00 0.00 3.11
1374 1391 2.357637 CGTGTCAGGCTTTTTCCTCAAA 59.642 45.455 0.00 0.00 33.25 2.69
1377 1394 1.878953 TCGTGTCAGGCTTTTTCCTC 58.121 50.000 0.00 0.00 33.25 3.71
1431 1448 6.573289 GCTTACGATCATCTCCTGAACCATAT 60.573 42.308 0.00 0.00 37.44 1.78
1442 1459 3.126831 CCAAGTGGCTTACGATCATCTC 58.873 50.000 0.00 0.00 0.00 2.75
1451 1468 7.499232 AGTTGATATTCATACCAAGTGGCTTAC 59.501 37.037 0.00 0.00 39.32 2.34
1516 1533 3.367910 GGTGGTGCAGTCTTCAACAAAAA 60.368 43.478 0.00 0.00 32.32 1.94
1538 1555 4.462508 TCATCAGGTTGCAGAGTCTTAG 57.537 45.455 0.00 0.00 0.00 2.18
1871 1888 2.222027 GGGGAGCACTCGAATTATTGG 58.778 52.381 0.00 0.00 0.00 3.16
1912 1929 9.906660 TGAACTTGTTTGATTATTGTTATCACC 57.093 29.630 0.00 0.00 32.04 4.02
1951 1971 3.442977 GCAGAAGCATCAGAAGATTTGGT 59.557 43.478 0.00 0.00 41.58 3.67
2347 2379 9.351570 CCAAAGTTGCAAAACAAAATAACAAAT 57.648 25.926 0.00 0.00 40.82 2.32
2348 2380 8.567948 TCCAAAGTTGCAAAACAAAATAACAAA 58.432 25.926 0.00 0.00 40.82 2.83
2349 2381 8.099364 TCCAAAGTTGCAAAACAAAATAACAA 57.901 26.923 0.00 0.00 40.82 2.83
2351 2383 9.220635 GAATCCAAAGTTGCAAAACAAAATAAC 57.779 29.630 0.00 0.00 40.82 1.89
2498 2545 9.581099 AAAGTTGTCGATAAATGTTTTCTTTGT 57.419 25.926 0.00 0.00 0.00 2.83
2743 2794 8.497910 ACACAATATCTAGTCATAATCCACCT 57.502 34.615 0.00 0.00 0.00 4.00
2770 2821 9.595823 GTGCATTCTACAACCTACTAAGATTTA 57.404 33.333 0.00 0.00 0.00 1.40
3039 3243 7.855375 AGATCTTGATTGATTAACTGGTCAGA 58.145 34.615 4.84 0.00 0.00 3.27
3181 3474 7.831753 TGAATTGAACAAACAGTTTAGTCCAA 58.168 30.769 0.00 1.04 41.51 3.53
3334 3793 9.369904 CCCATCTGAAACAATGTAATAAAAAGG 57.630 33.333 0.00 0.00 0.00 3.11
4097 5439 2.185004 ATTTGTGAACGGAGGGAGTG 57.815 50.000 0.00 0.00 0.00 3.51
4227 5731 8.613922 TGATGCTGATGAGATATATTCCCTAA 57.386 34.615 0.00 0.00 0.00 2.69
4228 5732 8.794364 ATGATGCTGATGAGATATATTCCCTA 57.206 34.615 0.00 0.00 0.00 3.53
4267 5771 7.868775 AGTTTGACGGGAAAAGAGTAATTTAC 58.131 34.615 0.00 0.00 0.00 2.01
4864 6413 4.836825 TCAAGTCCTTCAGGTGATGATTC 58.163 43.478 0.00 0.00 37.89 2.52
4898 6447 1.067364 TGTACGGAACACTTTCGCAGA 59.933 47.619 0.00 0.00 31.43 4.26
4956 6505 6.761242 GGTAAGAAATGGTGAGTTTTGCTTTT 59.239 34.615 0.00 0.00 0.00 2.27
5004 6553 1.871039 TGCGAGCCTAAACAACTCAAC 59.129 47.619 0.00 0.00 0.00 3.18
5210 6774 4.150980 CGGTAATGCTACACGTTCTTTTGA 59.849 41.667 0.00 0.00 0.00 2.69
5605 7297 6.611381 TGGAGAAAAGAAGCAAATGATAACG 58.389 36.000 0.00 0.00 0.00 3.18
5637 7329 5.159209 CAAATCTTTGTTCAGCTCATCCAC 58.841 41.667 0.00 0.00 33.59 4.02
5639 7331 4.381292 CCCAAATCTTTGTTCAGCTCATCC 60.381 45.833 2.29 0.00 36.45 3.51
5681 7373 2.663196 GCACCGTTGCCTAGAGGT 59.337 61.111 0.00 0.00 43.66 3.85
6052 7790 2.224426 TGGAGCACCAACTACGAAATGT 60.224 45.455 0.00 0.00 43.91 2.71
6220 7975 0.033894 TCGAATTTACCAAGGGGCCC 60.034 55.000 17.12 17.12 37.90 5.80
6264 8019 4.057063 ACTACTAGTTGCAGTTAGGGGA 57.943 45.455 0.00 0.00 0.00 4.81
6312 8067 0.906756 TCCAGGAGCAGGGAGACTTG 60.907 60.000 0.00 0.00 41.09 3.16
6484 8250 7.607607 AGGTTATCTATATTTGCGATTGATGCA 59.392 33.333 0.00 0.00 41.38 3.96
6494 8260 8.144478 TCACTCTGACAGGTTATCTATATTTGC 58.856 37.037 1.81 0.00 0.00 3.68
6506 8272 2.439507 ACAACCATCACTCTGACAGGTT 59.560 45.455 1.81 5.52 44.14 3.50
6610 8378 7.971168 CACAGTTACCATGAACAAACACTTTTA 59.029 33.333 0.00 0.00 0.00 1.52
6625 8393 0.605319 CCACGGTGCACAGTTACCAT 60.605 55.000 20.43 0.00 36.76 3.55
6729 8498 1.074775 AAATCGACCTGCCAGCCAA 59.925 52.632 0.00 0.00 0.00 4.52
6753 8522 6.099269 TGGCCTTATAGTAGGAAGAAACGAAT 59.901 38.462 3.32 0.00 37.50 3.34
6762 8531 4.340381 GTCGAGTTGGCCTTATAGTAGGAA 59.660 45.833 3.32 0.00 37.50 3.36
6770 8539 1.153429 GCGGTCGAGTTGGCCTTAT 60.153 57.895 3.32 0.00 0.00 1.73
6771 8540 2.263540 GCGGTCGAGTTGGCCTTA 59.736 61.111 3.32 0.00 0.00 2.69
6776 8545 3.103911 GTCACGCGGTCGAGTTGG 61.104 66.667 12.47 0.00 39.41 3.77
6777 8546 3.103911 GGTCACGCGGTCGAGTTG 61.104 66.667 12.47 0.00 39.41 3.16
6778 8547 4.353437 GGGTCACGCGGTCGAGTT 62.353 66.667 12.47 0.00 39.41 3.01
6782 8551 4.973055 TTTGGGGTCACGCGGTCG 62.973 66.667 12.47 0.00 42.43 4.79
6783 8552 3.351416 GTTTGGGGTCACGCGGTC 61.351 66.667 12.47 0.00 0.00 4.79
6786 8555 4.973055 TCCGTTTGGGGTCACGCG 62.973 66.667 3.53 3.53 34.98 6.01
6787 8556 3.351416 GTCCGTTTGGGGTCACGC 61.351 66.667 0.00 0.00 34.98 5.34
6788 8557 3.039588 CGTCCGTTTGGGGTCACG 61.040 66.667 0.00 0.00 36.01 4.35
6789 8558 1.096967 AAACGTCCGTTTGGGGTCAC 61.097 55.000 16.18 0.00 45.34 3.67
6790 8559 0.814812 GAAACGTCCGTTTGGGGTCA 60.815 55.000 21.09 0.00 46.80 4.02
6791 8560 1.834458 CGAAACGTCCGTTTGGGGTC 61.834 60.000 21.09 6.80 46.80 4.46
6792 8561 1.888638 CGAAACGTCCGTTTGGGGT 60.889 57.895 21.09 0.00 46.80 4.95
6793 8562 1.438562 AACGAAACGTCCGTTTGGGG 61.439 55.000 24.19 15.14 46.52 4.96
6794 8563 2.016171 AACGAAACGTCCGTTTGGG 58.984 52.632 24.19 17.03 46.52 4.12
6799 8568 2.507866 CAAACAAAACGAAACGTCCGT 58.492 42.857 9.69 9.69 39.99 4.69
6800 8569 1.841342 CCAAACAAAACGAAACGTCCG 59.159 47.619 8.48 8.48 39.99 4.79
6801 8570 2.186891 CCCAAACAAAACGAAACGTCC 58.813 47.619 0.00 0.00 39.99 4.79
6802 8571 2.866198 ACCCAAACAAAACGAAACGTC 58.134 42.857 0.00 0.00 39.99 4.34
6803 8572 4.635833 ATACCCAAACAAAACGAAACGT 57.364 36.364 0.00 0.00 43.97 3.99
6804 8573 4.799428 ACAATACCCAAACAAAACGAAACG 59.201 37.500 0.00 0.00 0.00 3.60
6805 8574 6.020201 CAGACAATACCCAAACAAAACGAAAC 60.020 38.462 0.00 0.00 0.00 2.78
6806 8575 6.037098 CAGACAATACCCAAACAAAACGAAA 58.963 36.000 0.00 0.00 0.00 3.46
6807 8576 5.125739 ACAGACAATACCCAAACAAAACGAA 59.874 36.000 0.00 0.00 0.00 3.85
6808 8577 4.641094 ACAGACAATACCCAAACAAAACGA 59.359 37.500 0.00 0.00 0.00 3.85
6809 8578 4.927422 ACAGACAATACCCAAACAAAACG 58.073 39.130 0.00 0.00 0.00 3.60
6810 8579 6.036626 CCAAACAGACAATACCCAAACAAAAC 59.963 38.462 0.00 0.00 0.00 2.43
6811 8580 6.109359 CCAAACAGACAATACCCAAACAAAA 58.891 36.000 0.00 0.00 0.00 2.44
6812 8581 5.395768 CCCAAACAGACAATACCCAAACAAA 60.396 40.000 0.00 0.00 0.00 2.83
6813 8582 4.100189 CCCAAACAGACAATACCCAAACAA 59.900 41.667 0.00 0.00 0.00 2.83
6814 8583 3.639094 CCCAAACAGACAATACCCAAACA 59.361 43.478 0.00 0.00 0.00 2.83
6815 8584 3.006430 CCCCAAACAGACAATACCCAAAC 59.994 47.826 0.00 0.00 0.00 2.93
6816 8585 3.235200 CCCCAAACAGACAATACCCAAA 58.765 45.455 0.00 0.00 0.00 3.28
6817 8586 2.178106 ACCCCAAACAGACAATACCCAA 59.822 45.455 0.00 0.00 0.00 4.12
6818 8587 1.783979 ACCCCAAACAGACAATACCCA 59.216 47.619 0.00 0.00 0.00 4.51
6819 8588 2.443416 GACCCCAAACAGACAATACCC 58.557 52.381 0.00 0.00 0.00 3.69
6820 8589 2.081462 CGACCCCAAACAGACAATACC 58.919 52.381 0.00 0.00 0.00 2.73
6821 8590 1.467342 GCGACCCCAAACAGACAATAC 59.533 52.381 0.00 0.00 0.00 1.89
6822 8591 1.816074 GCGACCCCAAACAGACAATA 58.184 50.000 0.00 0.00 0.00 1.90
6823 8592 1.234615 CGCGACCCCAAACAGACAAT 61.235 55.000 0.00 0.00 0.00 2.71
6824 8593 1.890041 CGCGACCCCAAACAGACAA 60.890 57.895 0.00 0.00 0.00 3.18
6825 8594 2.280524 CGCGACCCCAAACAGACA 60.281 61.111 0.00 0.00 0.00 3.41
6826 8595 3.723348 GCGCGACCCCAAACAGAC 61.723 66.667 12.10 0.00 0.00 3.51
6827 8596 3.545124 ATGCGCGACCCCAAACAGA 62.545 57.895 12.10 0.00 0.00 3.41
6828 8597 3.039202 GATGCGCGACCCCAAACAG 62.039 63.158 12.10 0.00 0.00 3.16
6829 8598 3.053291 GATGCGCGACCCCAAACA 61.053 61.111 12.10 0.00 0.00 2.83
6830 8599 2.746277 AGATGCGCGACCCCAAAC 60.746 61.111 12.10 0.00 0.00 2.93
6831 8600 2.435938 GAGATGCGCGACCCCAAA 60.436 61.111 12.10 0.00 0.00 3.28
6832 8601 2.739849 TTTGAGATGCGCGACCCCAA 62.740 55.000 12.10 3.61 0.00 4.12
6833 8602 3.247056 TTTGAGATGCGCGACCCCA 62.247 57.895 12.10 0.00 0.00 4.96
6834 8603 2.435938 TTTGAGATGCGCGACCCC 60.436 61.111 12.10 0.00 0.00 4.95
6835 8604 2.785258 GTTTGAGATGCGCGACCC 59.215 61.111 12.10 0.00 0.00 4.46
6836 8605 2.395690 CGTTTGAGATGCGCGACC 59.604 61.111 12.10 0.00 0.00 4.79
6837 8606 2.092291 TCCGTTTGAGATGCGCGAC 61.092 57.895 12.10 0.88 0.00 5.19
6838 8607 2.092291 GTCCGTTTGAGATGCGCGA 61.092 57.895 12.10 0.00 0.00 5.87
6839 8608 2.395690 GTCCGTTTGAGATGCGCG 59.604 61.111 0.00 0.00 0.00 6.86
6840 8609 2.279937 GACGTCCGTTTGAGATGCGC 62.280 60.000 3.51 0.00 0.00 6.09
6841 8610 0.732880 AGACGTCCGTTTGAGATGCG 60.733 55.000 13.01 0.00 0.00 4.73
6842 8611 0.716108 CAGACGTCCGTTTGAGATGC 59.284 55.000 13.01 0.00 32.75 3.91
6843 8612 2.065993 ACAGACGTCCGTTTGAGATG 57.934 50.000 13.01 2.87 34.76 2.90
6844 8613 2.814280 AACAGACGTCCGTTTGAGAT 57.186 45.000 13.01 1.02 34.76 2.75
6845 8614 2.589798 AAACAGACGTCCGTTTGAGA 57.410 45.000 25.06 0.00 34.16 3.27
6846 8615 2.350498 ACAAAACAGACGTCCGTTTGAG 59.650 45.455 26.05 22.64 35.57 3.02
6847 8616 2.348660 ACAAAACAGACGTCCGTTTGA 58.651 42.857 26.05 0.00 35.57 2.69
6848 8617 2.817538 ACAAAACAGACGTCCGTTTG 57.182 45.000 26.05 24.80 35.57 2.93
6849 8618 3.494232 CAAACAAAACAGACGTCCGTTT 58.506 40.909 21.31 21.31 36.92 3.60
6850 8619 2.159490 CCAAACAAAACAGACGTCCGTT 60.159 45.455 13.01 12.12 0.00 4.44
6851 8620 1.399089 CCAAACAAAACAGACGTCCGT 59.601 47.619 13.01 4.97 0.00 4.69
6852 8621 1.666700 TCCAAACAAAACAGACGTCCG 59.333 47.619 13.01 4.15 0.00 4.79
6853 8622 3.982576 ATCCAAACAAAACAGACGTCC 57.017 42.857 13.01 0.00 0.00 4.79
6854 8623 7.924103 ATAAAATCCAAACAAAACAGACGTC 57.076 32.000 7.70 7.70 0.00 4.34
6855 8624 7.924103 GATAAAATCCAAACAAAACAGACGT 57.076 32.000 0.00 0.00 0.00 4.34
6870 8639 7.761038 ATCCCTATTCAAACGGATAAAATCC 57.239 36.000 0.00 0.00 46.22 3.01
6871 8640 9.463443 CAAATCCCTATTCAAACGGATAAAATC 57.537 33.333 0.00 0.00 33.92 2.17
6872 8641 8.421002 CCAAATCCCTATTCAAACGGATAAAAT 58.579 33.333 0.00 0.00 33.92 1.82
6873 8642 7.147811 CCCAAATCCCTATTCAAACGGATAAAA 60.148 37.037 0.00 0.00 33.92 1.52
6874 8643 6.322712 CCCAAATCCCTATTCAAACGGATAAA 59.677 38.462 0.00 0.00 33.92 1.40
6875 8644 5.830991 CCCAAATCCCTATTCAAACGGATAA 59.169 40.000 0.00 0.00 33.92 1.75
6876 8645 5.381757 CCCAAATCCCTATTCAAACGGATA 58.618 41.667 0.00 0.00 33.92 2.59
6877 8646 4.215109 CCCAAATCCCTATTCAAACGGAT 58.785 43.478 0.00 0.00 36.66 4.18
6878 8647 3.626222 CCCCAAATCCCTATTCAAACGGA 60.626 47.826 0.00 0.00 0.00 4.69
6879 8648 2.693074 CCCCAAATCCCTATTCAAACGG 59.307 50.000 0.00 0.00 0.00 4.44
6880 8649 3.361786 ACCCCAAATCCCTATTCAAACG 58.638 45.455 0.00 0.00 0.00 3.60
6881 8650 3.380320 CGACCCCAAATCCCTATTCAAAC 59.620 47.826 0.00 0.00 0.00 2.93
6882 8651 3.010808 ACGACCCCAAATCCCTATTCAAA 59.989 43.478 0.00 0.00 0.00 2.69
6883 8652 2.578940 ACGACCCCAAATCCCTATTCAA 59.421 45.455 0.00 0.00 0.00 2.69
6884 8653 2.092646 CACGACCCCAAATCCCTATTCA 60.093 50.000 0.00 0.00 0.00 2.57
6885 8654 2.092592 ACACGACCCCAAATCCCTATTC 60.093 50.000 0.00 0.00 0.00 1.75
6886 8655 1.920351 ACACGACCCCAAATCCCTATT 59.080 47.619 0.00 0.00 0.00 1.73
6887 8656 1.489230 GACACGACCCCAAATCCCTAT 59.511 52.381 0.00 0.00 0.00 2.57
6888 8657 0.906775 GACACGACCCCAAATCCCTA 59.093 55.000 0.00 0.00 0.00 3.53
6889 8658 0.840722 AGACACGACCCCAAATCCCT 60.841 55.000 0.00 0.00 0.00 4.20
6890 8659 0.676782 CAGACACGACCCCAAATCCC 60.677 60.000 0.00 0.00 0.00 3.85
6891 8660 0.036306 ACAGACACGACCCCAAATCC 59.964 55.000 0.00 0.00 0.00 3.01
6892 8661 1.156736 CACAGACACGACCCCAAATC 58.843 55.000 0.00 0.00 0.00 2.17
6893 8662 0.889186 GCACAGACACGACCCCAAAT 60.889 55.000 0.00 0.00 0.00 2.32
6894 8663 1.525077 GCACAGACACGACCCCAAA 60.525 57.895 0.00 0.00 0.00 3.28
6895 8664 2.110213 GCACAGACACGACCCCAA 59.890 61.111 0.00 0.00 0.00 4.12
6896 8665 4.293648 CGCACAGACACGACCCCA 62.294 66.667 0.00 0.00 0.00 4.96
6897 8666 2.221906 ATACGCACAGACACGACCCC 62.222 60.000 0.00 0.00 0.00 4.95
6898 8667 0.801067 GATACGCACAGACACGACCC 60.801 60.000 0.00 0.00 0.00 4.46
6899 8668 0.801067 GGATACGCACAGACACGACC 60.801 60.000 0.00 0.00 0.00 4.79
6900 8669 0.170561 AGGATACGCACAGACACGAC 59.829 55.000 0.00 0.00 46.39 4.34
6901 8670 0.170339 CAGGATACGCACAGACACGA 59.830 55.000 0.00 0.00 46.39 4.35
6902 8671 0.802222 CCAGGATACGCACAGACACG 60.802 60.000 0.00 0.00 46.39 4.49
6903 8672 0.460284 CCCAGGATACGCACAGACAC 60.460 60.000 0.00 0.00 46.39 3.67
6904 8673 0.613572 TCCCAGGATACGCACAGACA 60.614 55.000 0.00 0.00 46.39 3.41
6905 8674 0.753262 ATCCCAGGATACGCACAGAC 59.247 55.000 0.00 0.00 46.39 3.51
6906 8675 0.752658 CATCCCAGGATACGCACAGA 59.247 55.000 0.00 0.00 46.39 3.41
6907 8676 0.882042 GCATCCCAGGATACGCACAG 60.882 60.000 0.00 0.00 46.39 3.66
6908 8677 1.146041 GCATCCCAGGATACGCACA 59.854 57.895 0.00 0.00 46.39 4.57
6909 8678 1.956170 CGCATCCCAGGATACGCAC 60.956 63.158 6.38 0.00 46.39 5.34
6910 8679 2.421314 CGCATCCCAGGATACGCA 59.579 61.111 6.38 0.00 46.39 5.24
6911 8680 2.357517 CCGCATCCCAGGATACGC 60.358 66.667 12.90 6.39 39.34 4.42
6912 8681 1.300931 CACCGCATCCCAGGATACG 60.301 63.158 11.62 11.62 46.39 3.06
6913 8682 1.071471 CCACCGCATCCCAGGATAC 59.929 63.158 0.00 0.00 32.93 2.24
6914 8683 1.383943 ACCACCGCATCCCAGGATA 60.384 57.895 0.00 0.00 32.93 2.59
6915 8684 2.692368 ACCACCGCATCCCAGGAT 60.692 61.111 0.00 0.00 34.81 3.24
6916 8685 3.399181 GACCACCGCATCCCAGGA 61.399 66.667 0.00 0.00 0.00 3.86
6917 8686 4.838152 CGACCACCGCATCCCAGG 62.838 72.222 0.00 0.00 0.00 4.45
6918 8687 4.082523 ACGACCACCGCATCCCAG 62.083 66.667 0.00 0.00 43.32 4.45
6919 8688 4.386951 CACGACCACCGCATCCCA 62.387 66.667 0.00 0.00 43.32 4.37
6944 8713 1.586154 AAAAAGGATGAGGCCGCGTG 61.586 55.000 5.70 0.00 0.00 5.34
6945 8714 1.303317 AAAAAGGATGAGGCCGCGT 60.303 52.632 4.92 0.00 0.00 6.01
6946 8715 1.137404 CAAAAAGGATGAGGCCGCG 59.863 57.895 0.00 0.00 0.00 6.46
6947 8716 1.153765 GCAAAAAGGATGAGGCCGC 60.154 57.895 0.00 0.00 0.00 6.53
6948 8717 0.453390 GAGCAAAAAGGATGAGGCCG 59.547 55.000 0.00 0.00 0.00 6.13
6949 8718 0.820226 GGAGCAAAAAGGATGAGGCC 59.180 55.000 0.00 0.00 0.00 5.19
6950 8719 1.549203 TGGAGCAAAAAGGATGAGGC 58.451 50.000 0.00 0.00 0.00 4.70
6951 8720 3.629087 AGATGGAGCAAAAAGGATGAGG 58.371 45.455 0.00 0.00 0.00 3.86
6952 8721 4.461781 ACAAGATGGAGCAAAAAGGATGAG 59.538 41.667 0.00 0.00 0.00 2.90
6953 8722 4.410099 ACAAGATGGAGCAAAAAGGATGA 58.590 39.130 0.00 0.00 0.00 2.92
6954 8723 4.381292 GGACAAGATGGAGCAAAAAGGATG 60.381 45.833 0.00 0.00 0.00 3.51
6955 8724 3.766051 GGACAAGATGGAGCAAAAAGGAT 59.234 43.478 0.00 0.00 0.00 3.24
6956 8725 3.157087 GGACAAGATGGAGCAAAAAGGA 58.843 45.455 0.00 0.00 0.00 3.36
6957 8726 2.095059 CGGACAAGATGGAGCAAAAAGG 60.095 50.000 0.00 0.00 0.00 3.11
6958 8727 2.554032 ACGGACAAGATGGAGCAAAAAG 59.446 45.455 0.00 0.00 0.00 2.27
6959 8728 2.552315 GACGGACAAGATGGAGCAAAAA 59.448 45.455 0.00 0.00 0.00 1.94
6960 8729 2.151202 GACGGACAAGATGGAGCAAAA 58.849 47.619 0.00 0.00 0.00 2.44
6961 8730 1.808411 GACGGACAAGATGGAGCAAA 58.192 50.000 0.00 0.00 0.00 3.68
6962 8731 0.389817 CGACGGACAAGATGGAGCAA 60.390 55.000 0.00 0.00 0.00 3.91
6963 8732 1.215382 CGACGGACAAGATGGAGCA 59.785 57.895 0.00 0.00 0.00 4.26
6964 8733 2.167861 GCGACGGACAAGATGGAGC 61.168 63.158 0.00 0.00 0.00 4.70
6965 8734 1.874019 CGCGACGGACAAGATGGAG 60.874 63.158 0.00 0.00 0.00 3.86
6966 8735 2.180769 CGCGACGGACAAGATGGA 59.819 61.111 0.00 0.00 0.00 3.41
6987 8756 9.299465 AGTTTTGATGAAAATATGGGCATTTTT 57.701 25.926 0.00 0.00 38.04 1.94
6988 8757 8.866970 AGTTTTGATGAAAATATGGGCATTTT 57.133 26.923 0.00 0.00 40.06 1.82
6989 8758 9.603921 CTAGTTTTGATGAAAATATGGGCATTT 57.396 29.630 0.00 0.00 33.63 2.32
6990 8759 8.761689 ACTAGTTTTGATGAAAATATGGGCATT 58.238 29.630 0.00 0.00 33.63 3.56
6991 8760 8.310122 ACTAGTTTTGATGAAAATATGGGCAT 57.690 30.769 0.00 0.00 33.63 4.40
6992 8761 7.716799 ACTAGTTTTGATGAAAATATGGGCA 57.283 32.000 0.00 0.00 33.63 5.36
6993 8762 9.435688 AAAACTAGTTTTGATGAAAATATGGGC 57.564 29.630 28.38 0.00 40.84 5.36
7001 8770 9.589111 GGGTTGTAAAAACTAGTTTTGATGAAA 57.411 29.630 29.33 17.88 41.45 2.69
7002 8771 8.750298 TGGGTTGTAAAAACTAGTTTTGATGAA 58.250 29.630 29.33 17.57 41.45 2.57
7003 8772 8.294954 TGGGTTGTAAAAACTAGTTTTGATGA 57.705 30.769 29.33 15.82 41.45 2.92
7004 8773 8.934507 TTGGGTTGTAAAAACTAGTTTTGATG 57.065 30.769 29.33 0.00 41.45 3.07
7006 8775 9.372369 CATTTGGGTTGTAAAAACTAGTTTTGA 57.628 29.630 29.33 21.71 41.45 2.69
7007 8776 9.157104 ACATTTGGGTTGTAAAAACTAGTTTTG 57.843 29.630 29.33 17.10 41.45 2.44
7008 8777 9.727859 AACATTTGGGTTGTAAAAACTAGTTTT 57.272 25.926 24.66 24.66 43.88 2.43
7009 8778 9.727859 AAACATTTGGGTTGTAAAAACTAGTTT 57.272 25.926 15.22 15.22 0.00 2.66
7010 8779 9.157104 CAAACATTTGGGTTGTAAAAACTAGTT 57.843 29.630 1.12 1.12 34.59 2.24
7011 8780 8.315482 ACAAACATTTGGGTTGTAAAAACTAGT 58.685 29.630 9.09 0.00 42.34 2.57
7012 8781 8.710835 ACAAACATTTGGGTTGTAAAAACTAG 57.289 30.769 9.09 0.00 42.34 2.57
7013 8782 8.532819 AGACAAACATTTGGGTTGTAAAAACTA 58.467 29.630 9.09 0.00 42.34 2.24
7014 8783 7.333174 CAGACAAACATTTGGGTTGTAAAAACT 59.667 33.333 9.09 0.00 42.34 2.66
7015 8784 7.332182 TCAGACAAACATTTGGGTTGTAAAAAC 59.668 33.333 9.09 0.00 42.34 2.43
7016 8785 7.386851 TCAGACAAACATTTGGGTTGTAAAAA 58.613 30.769 9.09 0.00 42.34 1.94
7017 8786 6.936279 TCAGACAAACATTTGGGTTGTAAAA 58.064 32.000 9.09 0.00 42.34 1.52
7018 8787 6.531503 TCAGACAAACATTTGGGTTGTAAA 57.468 33.333 9.09 0.00 42.34 2.01
7019 8788 6.531503 TTCAGACAAACATTTGGGTTGTAA 57.468 33.333 9.09 0.00 42.34 2.41
7020 8789 6.531503 TTTCAGACAAACATTTGGGTTGTA 57.468 33.333 9.09 0.00 42.34 2.41
7021 8790 5.413309 TTTCAGACAAACATTTGGGTTGT 57.587 34.783 9.09 0.00 42.34 3.32
7022 8791 6.923928 ATTTTCAGACAAACATTTGGGTTG 57.076 33.333 9.09 4.52 42.34 3.77
7023 8792 9.454859 TTTAATTTTCAGACAAACATTTGGGTT 57.545 25.926 9.09 0.00 42.34 4.11
7024 8793 9.454859 TTTTAATTTTCAGACAAACATTTGGGT 57.545 25.926 9.09 0.00 42.34 4.51
7050 8819 9.974980 ACAATTTCGATTTGGTTGTAAAACTAT 57.025 25.926 11.83 0.00 32.01 2.12
7051 8820 9.453325 GACAATTTCGATTTGGTTGTAAAACTA 57.547 29.630 11.83 0.00 32.01 2.24
7052 8821 8.194769 AGACAATTTCGATTTGGTTGTAAAACT 58.805 29.630 11.83 0.44 32.01 2.66
7053 8822 8.347729 AGACAATTTCGATTTGGTTGTAAAAC 57.652 30.769 11.83 0.00 33.55 2.43
7054 8823 9.453325 GTAGACAATTTCGATTTGGTTGTAAAA 57.547 29.630 11.83 0.00 33.55 1.52
7055 8824 8.622157 TGTAGACAATTTCGATTTGGTTGTAAA 58.378 29.630 11.83 0.00 33.55 2.01
7056 8825 8.071368 GTGTAGACAATTTCGATTTGGTTGTAA 58.929 33.333 11.83 0.00 33.55 2.41
7057 8826 7.442969 AGTGTAGACAATTTCGATTTGGTTGTA 59.557 33.333 11.83 0.00 33.55 2.41
7058 8827 6.262273 AGTGTAGACAATTTCGATTTGGTTGT 59.738 34.615 11.83 7.16 35.87 3.32
7059 8828 6.578545 CAGTGTAGACAATTTCGATTTGGTTG 59.421 38.462 11.83 4.55 0.00 3.77
7060 8829 6.485313 TCAGTGTAGACAATTTCGATTTGGTT 59.515 34.615 11.83 4.01 0.00 3.67
7061 8830 5.995282 TCAGTGTAGACAATTTCGATTTGGT 59.005 36.000 11.83 0.00 0.00 3.67
7062 8831 6.480524 TCAGTGTAGACAATTTCGATTTGG 57.519 37.500 11.83 0.00 0.00 3.28
7073 8842 9.391006 GGTCCATTTTATATTCAGTGTAGACAA 57.609 33.333 0.00 0.00 0.00 3.18
7074 8843 8.544622 TGGTCCATTTTATATTCAGTGTAGACA 58.455 33.333 0.00 0.00 0.00 3.41
7075 8844 8.958119 TGGTCCATTTTATATTCAGTGTAGAC 57.042 34.615 0.00 0.00 0.00 2.59
7079 8848 9.693739 TGTATTGGTCCATTTTATATTCAGTGT 57.306 29.630 0.00 0.00 0.00 3.55
7111 8880 0.409092 AGGGATCACATTGGCAACCA 59.591 50.000 0.00 0.00 0.00 3.67
7112 8881 1.106285 GAGGGATCACATTGGCAACC 58.894 55.000 0.00 0.00 0.00 3.77
7113 8882 1.474077 GTGAGGGATCACATTGGCAAC 59.526 52.381 0.00 0.00 40.16 4.17
7114 8883 1.838112 GTGAGGGATCACATTGGCAA 58.162 50.000 0.68 0.68 40.16 4.52
7115 8884 0.392863 CGTGAGGGATCACATTGGCA 60.393 55.000 0.00 0.00 40.42 4.92
7116 8885 0.392998 ACGTGAGGGATCACATTGGC 60.393 55.000 0.00 0.00 40.42 4.52
7117 8886 1.372582 CACGTGAGGGATCACATTGG 58.627 55.000 10.90 0.00 40.42 3.16
7118 8887 0.729116 GCACGTGAGGGATCACATTG 59.271 55.000 22.23 6.05 40.42 2.82
7119 8888 0.615331 AGCACGTGAGGGATCACATT 59.385 50.000 22.23 0.00 40.42 2.71
7120 8889 2.290847 AGCACGTGAGGGATCACAT 58.709 52.632 22.23 0.00 40.42 3.21
7121 8890 3.791640 AGCACGTGAGGGATCACA 58.208 55.556 22.23 0.00 40.42 3.58
7125 8894 0.324368 TGGTAGAGCACGTGAGGGAT 60.324 55.000 22.23 1.93 35.60 3.85
7126 8895 0.541063 TTGGTAGAGCACGTGAGGGA 60.541 55.000 22.23 0.00 35.60 4.20
7127 8896 0.108615 CTTGGTAGAGCACGTGAGGG 60.109 60.000 22.23 0.00 37.78 4.30
7128 8897 0.603569 ACTTGGTAGAGCACGTGAGG 59.396 55.000 22.23 0.00 0.00 3.86
7129 8898 1.269723 TGACTTGGTAGAGCACGTGAG 59.730 52.381 22.23 7.45 0.00 3.51
7130 8899 1.324383 TGACTTGGTAGAGCACGTGA 58.676 50.000 22.23 0.00 0.00 4.35
7131 8900 2.370281 ATGACTTGGTAGAGCACGTG 57.630 50.000 12.28 12.28 0.00 4.49
7132 8901 3.402628 AAATGACTTGGTAGAGCACGT 57.597 42.857 0.00 0.00 0.00 4.49
7133 8902 3.745975 TCAAAATGACTTGGTAGAGCACG 59.254 43.478 0.00 0.00 0.00 5.34
7134 8903 5.470098 TCTTCAAAATGACTTGGTAGAGCAC 59.530 40.000 0.00 0.00 0.00 4.40
7135 8904 5.620206 TCTTCAAAATGACTTGGTAGAGCA 58.380 37.500 0.00 0.00 0.00 4.26
7136 8905 6.749923 ATCTTCAAAATGACTTGGTAGAGC 57.250 37.500 0.00 0.00 0.00 4.09
7137 8906 8.327941 TGAATCTTCAAAATGACTTGGTAGAG 57.672 34.615 0.00 0.00 33.55 2.43
7138 8907 8.690203 TTGAATCTTCAAAATGACTTGGTAGA 57.310 30.769 2.94 0.00 43.62 2.59
7152 8921 4.583907 TGGCACACTCATTTGAATCTTCAA 59.416 37.500 1.28 1.28 44.78 2.69
7153 8922 4.143543 TGGCACACTCATTTGAATCTTCA 58.856 39.130 0.00 0.00 34.92 3.02
7154 8923 4.771590 TGGCACACTCATTTGAATCTTC 57.228 40.909 0.00 0.00 0.00 2.87
7155 8924 5.244402 TGATTGGCACACTCATTTGAATCTT 59.756 36.000 0.00 0.00 43.06 2.40
7156 8925 4.768448 TGATTGGCACACTCATTTGAATCT 59.232 37.500 0.00 0.00 43.06 2.40
7157 8926 5.063180 TGATTGGCACACTCATTTGAATC 57.937 39.130 0.00 0.00 43.06 2.52
7170 8939 0.097674 GTGAGATGCGTGATTGGCAC 59.902 55.000 0.00 0.00 44.23 5.01
7171 8940 1.360931 CGTGAGATGCGTGATTGGCA 61.361 55.000 0.00 0.00 45.71 4.92
7172 8941 1.349627 CGTGAGATGCGTGATTGGC 59.650 57.895 0.00 0.00 0.00 4.52
7173 8942 0.740868 ACCGTGAGATGCGTGATTGG 60.741 55.000 0.00 0.00 0.00 3.16
7174 8943 0.371301 CACCGTGAGATGCGTGATTG 59.629 55.000 0.00 0.00 0.00 2.67
7175 8944 2.754648 CACCGTGAGATGCGTGATT 58.245 52.632 0.00 0.00 0.00 2.57
7176 8945 4.502263 CACCGTGAGATGCGTGAT 57.498 55.556 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.