Multiple sequence alignment - TraesCS7A01G302000
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7A01G302000 | chr7A | 100.000 | 8056 | 0 | 0 | 1 | 8056 | 422480002 | 422471947 | 0.000000e+00 | 14877.0 |
1 | TraesCS7A01G302000 | chr7A | 84.629 | 566 | 65 | 10 | 3060 | 3606 | 612424538 | 612423976 | 1.980000e-150 | 544.0 |
2 | TraesCS7A01G302000 | chr7A | 95.033 | 302 | 15 | 0 | 7634 | 7935 | 620420679 | 620420378 | 7.320000e-130 | 475.0 |
3 | TraesCS7A01G302000 | chr7A | 95.876 | 97 | 3 | 1 | 4843 | 4939 | 556151909 | 556152004 | 1.080000e-33 | 156.0 |
4 | TraesCS7A01G302000 | chr7A | 83.537 | 164 | 25 | 2 | 3509 | 3672 | 89287294 | 89287455 | 1.400000e-32 | 152.0 |
5 | TraesCS7A01G302000 | chr7B | 96.680 | 4096 | 98 | 21 | 778 | 4852 | 370267173 | 370263095 | 0.000000e+00 | 6776.0 |
6 | TraesCS7A01G302000 | chr7B | 97.388 | 2718 | 51 | 8 | 4933 | 7633 | 370263097 | 370260383 | 0.000000e+00 | 4608.0 |
7 | TraesCS7A01G302000 | chr7B | 79.399 | 699 | 80 | 24 | 1 | 663 | 370267861 | 370267191 | 1.240000e-117 | 435.0 |
8 | TraesCS7A01G302000 | chr7B | 92.453 | 106 | 7 | 1 | 7935 | 8039 | 370260382 | 370260277 | 5.040000e-32 | 150.0 |
9 | TraesCS7A01G302000 | chr7B | 85.567 | 97 | 12 | 2 | 654 | 750 | 637692482 | 637692388 | 5.140000e-17 | 100.0 |
10 | TraesCS7A01G302000 | chr7D | 96.360 | 3104 | 82 | 13 | 778 | 3863 | 375973563 | 375970473 | 0.000000e+00 | 5077.0 |
11 | TraesCS7A01G302000 | chr7D | 97.315 | 1937 | 37 | 4 | 4933 | 6855 | 375968803 | 375966868 | 0.000000e+00 | 3275.0 |
12 | TraesCS7A01G302000 | chr7D | 97.822 | 1010 | 21 | 1 | 3843 | 4852 | 375969809 | 375968801 | 0.000000e+00 | 1742.0 |
13 | TraesCS7A01G302000 | chr7D | 97.063 | 783 | 20 | 3 | 6852 | 7633 | 375966766 | 375965986 | 0.000000e+00 | 1315.0 |
14 | TraesCS7A01G302000 | chr7D | 87.870 | 676 | 41 | 18 | 1 | 663 | 375974228 | 375973581 | 0.000000e+00 | 756.0 |
15 | TraesCS7A01G302000 | chr7D | 94.949 | 99 | 5 | 0 | 4842 | 4940 | 104453571 | 104453473 | 1.080000e-33 | 156.0 |
16 | TraesCS7A01G302000 | chr7D | 86.667 | 120 | 12 | 4 | 7935 | 8051 | 375965985 | 375965867 | 6.560000e-26 | 130.0 |
17 | TraesCS7A01G302000 | chr4D | 85.009 | 567 | 63 | 10 | 3060 | 3606 | 36620537 | 36619973 | 2.540000e-154 | 556.0 |
18 | TraesCS7A01G302000 | chr4D | 84.127 | 567 | 68 | 10 | 3060 | 3606 | 416829196 | 416828632 | 5.540000e-146 | 529.0 |
19 | TraesCS7A01G302000 | chr4D | 91.071 | 112 | 6 | 4 | 4850 | 4961 | 119412784 | 119412677 | 1.810000e-31 | 148.0 |
20 | TraesCS7A01G302000 | chr6D | 84.832 | 567 | 64 | 10 | 3060 | 3606 | 435992595 | 435992031 | 1.180000e-152 | 551.0 |
21 | TraesCS7A01G302000 | chr6D | 87.282 | 401 | 47 | 4 | 3086 | 3484 | 28035514 | 28035116 | 9.530000e-124 | 455.0 |
22 | TraesCS7A01G302000 | chr6D | 85.849 | 106 | 13 | 1 | 647 | 752 | 260030184 | 260030287 | 2.380000e-20 | 111.0 |
23 | TraesCS7A01G302000 | chr6D | 86.458 | 96 | 8 | 4 | 659 | 752 | 471303227 | 471303319 | 5.140000e-17 | 100.0 |
24 | TraesCS7A01G302000 | chr2D | 82.586 | 580 | 66 | 16 | 3060 | 3606 | 113496769 | 113496192 | 5.660000e-131 | 479.0 |
25 | TraesCS7A01G302000 | chr2D | 86.957 | 92 | 8 | 3 | 658 | 748 | 478122871 | 478122959 | 5.140000e-17 | 100.0 |
26 | TraesCS7A01G302000 | chr2D | 83.178 | 107 | 14 | 4 | 647 | 751 | 371930602 | 371930498 | 2.390000e-15 | 95.3 |
27 | TraesCS7A01G302000 | chr4A | 95.033 | 302 | 15 | 0 | 7634 | 7935 | 58522056 | 58521755 | 7.320000e-130 | 475.0 |
28 | TraesCS7A01G302000 | chr4A | 93.688 | 301 | 19 | 0 | 7634 | 7934 | 532067919 | 532067619 | 1.230000e-122 | 451.0 |
29 | TraesCS7A01G302000 | chr4A | 93.333 | 105 | 4 | 3 | 4835 | 4938 | 661959888 | 661959786 | 1.400000e-32 | 152.0 |
30 | TraesCS7A01G302000 | chr4A | 83.000 | 100 | 15 | 2 | 653 | 752 | 621290117 | 621290214 | 1.110000e-13 | 89.8 |
31 | TraesCS7A01G302000 | chr4B | 94.295 | 298 | 17 | 0 | 7634 | 7931 | 484585478 | 484585775 | 2.650000e-124 | 457.0 |
32 | TraesCS7A01G302000 | chr3A | 93.709 | 302 | 19 | 0 | 7633 | 7934 | 668824051 | 668823750 | 3.430000e-123 | 453.0 |
33 | TraesCS7A01G302000 | chr6B | 93.688 | 301 | 19 | 0 | 7634 | 7934 | 277270683 | 277270383 | 1.230000e-122 | 451.0 |
34 | TraesCS7A01G302000 | chr6B | 93.355 | 301 | 20 | 0 | 7634 | 7934 | 547713650 | 547713950 | 5.740000e-121 | 446.0 |
35 | TraesCS7A01G302000 | chr6B | 90.265 | 113 | 9 | 2 | 4843 | 4955 | 349967642 | 349967752 | 6.510000e-31 | 147.0 |
36 | TraesCS7A01G302000 | chr2A | 93.688 | 301 | 19 | 0 | 7634 | 7934 | 597847815 | 597848115 | 1.230000e-122 | 451.0 |
37 | TraesCS7A01G302000 | chr2A | 84.848 | 99 | 10 | 5 | 659 | 755 | 717955010 | 717955105 | 2.390000e-15 | 95.3 |
38 | TraesCS7A01G302000 | chr6A | 93.355 | 301 | 20 | 0 | 7634 | 7934 | 410575454 | 410575754 | 5.740000e-121 | 446.0 |
39 | TraesCS7A01G302000 | chr6A | 96.842 | 95 | 3 | 0 | 4845 | 4939 | 532655041 | 532655135 | 8.370000e-35 | 159.0 |
40 | TraesCS7A01G302000 | chr6A | 86.364 | 88 | 10 | 1 | 661 | 748 | 560753105 | 560753190 | 2.390000e-15 | 95.3 |
41 | TraesCS7A01G302000 | chrUn | 97.917 | 96 | 2 | 0 | 4840 | 4935 | 55723707 | 55723612 | 5.000000e-37 | 167.0 |
42 | TraesCS7A01G302000 | chrUn | 82.222 | 180 | 28 | 3 | 3495 | 3672 | 81902295 | 81902118 | 1.400000e-32 | 152.0 |
43 | TraesCS7A01G302000 | chr3D | 98.864 | 88 | 1 | 0 | 4851 | 4938 | 37369011 | 37369098 | 3.010000e-34 | 158.0 |
44 | TraesCS7A01G302000 | chr3D | 93.056 | 72 | 5 | 0 | 3594 | 3665 | 119368370 | 119368441 | 1.110000e-18 | 106.0 |
45 | TraesCS7A01G302000 | chr1D | 91.743 | 109 | 6 | 3 | 4851 | 4958 | 197821568 | 197821674 | 1.810000e-31 | 148.0 |
46 | TraesCS7A01G302000 | chr2B | 81.707 | 164 | 19 | 2 | 3511 | 3674 | 282056034 | 282055882 | 8.490000e-25 | 126.0 |
47 | TraesCS7A01G302000 | chr2B | 95.000 | 40 | 2 | 0 | 7957 | 7996 | 614908020 | 614908059 | 6.750000e-06 | 63.9 |
48 | TraesCS7A01G302000 | chr5B | 81.098 | 164 | 20 | 2 | 3511 | 3674 | 414956463 | 414956311 | 3.950000e-23 | 121.0 |
49 | TraesCS7A01G302000 | chr5D | 86.364 | 88 | 10 | 1 | 661 | 748 | 400298013 | 400298098 | 2.390000e-15 | 95.3 |
50 | TraesCS7A01G302000 | chr1B | 92.683 | 41 | 3 | 0 | 7956 | 7996 | 5949378 | 5949338 | 8.730000e-05 | 60.2 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7A01G302000 | chr7A | 422471947 | 422480002 | 8055 | True | 14877.000000 | 14877 | 100.0000 | 1 | 8056 | 1 | chr7A.!!$R1 | 8055 |
1 | TraesCS7A01G302000 | chr7A | 612423976 | 612424538 | 562 | True | 544.000000 | 544 | 84.6290 | 3060 | 3606 | 1 | chr7A.!!$R2 | 546 |
2 | TraesCS7A01G302000 | chr7B | 370260277 | 370267861 | 7584 | True | 2992.250000 | 6776 | 91.4800 | 1 | 8039 | 4 | chr7B.!!$R2 | 8038 |
3 | TraesCS7A01G302000 | chr7D | 375965867 | 375974228 | 8361 | True | 2049.166667 | 5077 | 93.8495 | 1 | 8051 | 6 | chr7D.!!$R2 | 8050 |
4 | TraesCS7A01G302000 | chr4D | 36619973 | 36620537 | 564 | True | 556.000000 | 556 | 85.0090 | 3060 | 3606 | 1 | chr4D.!!$R1 | 546 |
5 | TraesCS7A01G302000 | chr4D | 416828632 | 416829196 | 564 | True | 529.000000 | 529 | 84.1270 | 3060 | 3606 | 1 | chr4D.!!$R3 | 546 |
6 | TraesCS7A01G302000 | chr6D | 435992031 | 435992595 | 564 | True | 551.000000 | 551 | 84.8320 | 3060 | 3606 | 1 | chr6D.!!$R2 | 546 |
7 | TraesCS7A01G302000 | chr2D | 113496192 | 113496769 | 577 | True | 479.000000 | 479 | 82.5860 | 3060 | 3606 | 1 | chr2D.!!$R1 | 546 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
143 | 149 | 0.389166 | CTTGCTCTCCGTGTGTCCTC | 60.389 | 60.000 | 0.00 | 0.00 | 0.00 | 3.71 | F |
1532 | 1594 | 1.203087 | TCAACCCCGTCTCTTACTCCA | 60.203 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 | F |
2291 | 2356 | 0.804989 | GCTACCGCTGCAAAGACAAT | 59.195 | 50.000 | 0.00 | 0.00 | 0.00 | 2.71 | F |
2701 | 2769 | 0.037232 | GACCTCGTGGACCTTCAAGG | 60.037 | 60.000 | 11.17 | 0.22 | 37.91 | 3.61 | F |
2718 | 2786 | 0.392998 | AGGGCTGCATAGGTCGTTTG | 60.393 | 55.000 | 0.50 | 0.00 | 0.00 | 2.93 | F |
3122 | 3200 | 0.892755 | TCTAGGTGTCCGCATTTCGT | 59.107 | 50.000 | 0.00 | 0.00 | 36.19 | 3.85 | F |
3487 | 3579 | 1.009829 | GAGGTAAGAATGGCTGCGTG | 58.990 | 55.000 | 0.00 | 0.00 | 0.00 | 5.34 | F |
3814 | 3923 | 1.824852 | AGTTCCCGGCATGGAAATTTC | 59.175 | 47.619 | 9.83 | 9.83 | 45.67 | 2.17 | F |
4866 | 5659 | 2.042162 | TCTGGTACTCCCTCCGTAAACT | 59.958 | 50.000 | 0.00 | 0.00 | 0.00 | 2.66 | F |
6595 | 7403 | 1.673168 | CCAGAGCTTCAGGTATTGGC | 58.327 | 55.000 | 0.00 | 0.00 | 0.00 | 4.52 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1584 | 1646 | 0.108709 | ATGCAATGCGCCAAACGAAT | 60.109 | 45.000 | 4.18 | 0.00 | 44.05 | 3.34 | R |
2543 | 2611 | 1.002502 | AAAAGACCCGGTGCTAGCC | 60.003 | 57.895 | 13.29 | 3.27 | 0.00 | 3.93 | R |
3194 | 3272 | 1.126846 | CAAGCGACACGGTCATCTTTC | 59.873 | 52.381 | 0.00 | 0.00 | 36.27 | 2.62 | R |
4074 | 4867 | 1.736126 | CAGGCATGCTGATTATAGGCG | 59.264 | 52.381 | 18.92 | 0.00 | 0.00 | 5.52 | R |
4657 | 5450 | 3.128349 | TGTTACTGCTCCGAAAACACTC | 58.872 | 45.455 | 0.00 | 0.00 | 0.00 | 3.51 | R |
4693 | 5486 | 3.244033 | TGTGGCCACAAACAAGAAAAG | 57.756 | 42.857 | 36.10 | 0.00 | 38.56 | 2.27 | R |
4777 | 5570 | 4.073293 | ACTAGATAAACTGCCCCATTCG | 57.927 | 45.455 | 0.00 | 0.00 | 0.00 | 3.34 | R |
4923 | 5716 | 5.148502 | TCAGAAGAAAACTACTCCCTCTGT | 58.851 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 | R |
6816 | 7624 | 0.038801 | TCTCAGACAGACAGCAAGCG | 60.039 | 55.000 | 0.00 | 0.00 | 0.00 | 4.68 | R |
7966 | 8882 | 1.673920 | GCCACGACACTCTTTTTGGAA | 59.326 | 47.619 | 0.00 | 0.00 | 0.00 | 3.53 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
28 | 29 | 6.129035 | GCGGTACTATTTTTGTTTTCGCAAAT | 60.129 | 34.615 | 0.00 | 0.00 | 38.05 | 2.32 |
89 | 95 | 5.188434 | CACATCTTGCTTCTCTTAATCCCA | 58.812 | 41.667 | 0.00 | 0.00 | 0.00 | 4.37 |
95 | 101 | 3.202097 | GCTTCTCTTAATCCCAGTGAGC | 58.798 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
132 | 138 | 6.704050 | GGAACAAACTATATCCTCTTGCTCTC | 59.296 | 42.308 | 0.00 | 0.00 | 0.00 | 3.20 |
135 | 141 | 4.107127 | ACTATATCCTCTTGCTCTCCGT | 57.893 | 45.455 | 0.00 | 0.00 | 0.00 | 4.69 |
143 | 149 | 0.389166 | CTTGCTCTCCGTGTGTCCTC | 60.389 | 60.000 | 0.00 | 0.00 | 0.00 | 3.71 |
152 | 158 | 1.539827 | CCGTGTGTCCTCAAAAATCCC | 59.460 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
154 | 160 | 2.819608 | CGTGTGTCCTCAAAAATCCCAT | 59.180 | 45.455 | 0.00 | 0.00 | 0.00 | 4.00 |
169 | 177 | 1.704628 | TCCCATGTGGCAAGAGAAGAA | 59.295 | 47.619 | 0.00 | 0.00 | 0.00 | 2.52 |
266 | 281 | 4.492494 | TGAAGATGCATTCCTTAGCTCA | 57.508 | 40.909 | 0.00 | 0.00 | 0.00 | 4.26 |
267 | 282 | 4.847198 | TGAAGATGCATTCCTTAGCTCAA | 58.153 | 39.130 | 0.00 | 0.00 | 0.00 | 3.02 |
309 | 332 | 5.133941 | TGCAGGGTGACATGTTTTACTTAA | 58.866 | 37.500 | 0.00 | 0.00 | 45.79 | 1.85 |
310 | 333 | 5.772672 | TGCAGGGTGACATGTTTTACTTAAT | 59.227 | 36.000 | 0.00 | 0.00 | 45.79 | 1.40 |
311 | 334 | 6.266558 | TGCAGGGTGACATGTTTTACTTAATT | 59.733 | 34.615 | 0.00 | 0.00 | 45.79 | 1.40 |
312 | 335 | 7.448777 | TGCAGGGTGACATGTTTTACTTAATTA | 59.551 | 33.333 | 0.00 | 0.00 | 45.79 | 1.40 |
385 | 408 | 4.757149 | GTGTAGATGCCTTTTTGAGTCACT | 59.243 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
443 | 466 | 7.692172 | ACAAGAATGAATCCCATGGAATTTTT | 58.308 | 30.769 | 15.22 | 2.72 | 34.34 | 1.94 |
457 | 480 | 8.189460 | CCATGGAATTTTTGTTTGTTTGATTGT | 58.811 | 29.630 | 5.56 | 0.00 | 0.00 | 2.71 |
474 | 497 | 9.132521 | GTTTGATTGTATCACATGAAAGAAAGG | 57.867 | 33.333 | 0.00 | 0.00 | 39.39 | 3.11 |
475 | 498 | 8.408043 | TTGATTGTATCACATGAAAGAAAGGT | 57.592 | 30.769 | 0.00 | 0.00 | 39.39 | 3.50 |
476 | 499 | 8.408043 | TGATTGTATCACATGAAAGAAAGGTT | 57.592 | 30.769 | 0.00 | 0.00 | 33.59 | 3.50 |
505 | 552 | 2.441001 | AGAGATTGGAGCCCATGTTAGG | 59.559 | 50.000 | 0.00 | 0.00 | 31.53 | 2.69 |
539 | 586 | 9.913310 | TGGAATGTAGTACAAATGATTCCATTA | 57.087 | 29.630 | 22.79 | 8.35 | 41.84 | 1.90 |
602 | 650 | 7.342026 | ACAAACAACTTAGGAAGGATTCTTTGT | 59.658 | 33.333 | 0.00 | 0.00 | 46.56 | 2.83 |
629 | 677 | 6.327626 | TCAAAGAGACCTTTCAGGGGATATAG | 59.672 | 42.308 | 0.00 | 0.00 | 40.42 | 1.31 |
631 | 679 | 6.044411 | AGAGACCTTTCAGGGGATATAGAA | 57.956 | 41.667 | 0.00 | 0.00 | 40.58 | 2.10 |
633 | 681 | 7.780822 | AGAGACCTTTCAGGGGATATAGAATA | 58.219 | 38.462 | 0.00 | 0.00 | 40.58 | 1.75 |
634 | 682 | 8.413821 | AGAGACCTTTCAGGGGATATAGAATAT | 58.586 | 37.037 | 0.00 | 0.00 | 40.58 | 1.28 |
635 | 683 | 9.716556 | GAGACCTTTCAGGGGATATAGAATATA | 57.283 | 37.037 | 0.00 | 0.00 | 40.58 | 0.86 |
773 | 821 | 9.871175 | AATAAGTACTCCTTTTCCCTTTTACAA | 57.129 | 29.630 | 0.00 | 0.00 | 34.46 | 2.41 |
774 | 822 | 9.871175 | ATAAGTACTCCTTTTCCCTTTTACAAA | 57.129 | 29.630 | 0.00 | 0.00 | 34.46 | 2.83 |
775 | 823 | 7.818997 | AGTACTCCTTTTCCCTTTTACAAAG | 57.181 | 36.000 | 0.00 | 0.00 | 0.00 | 2.77 |
776 | 824 | 7.580007 | AGTACTCCTTTTCCCTTTTACAAAGA | 58.420 | 34.615 | 0.00 | 0.00 | 0.00 | 2.52 |
780 | 828 | 8.598916 | ACTCCTTTTCCCTTTTACAAAGAAAAA | 58.401 | 29.630 | 0.00 | 4.35 | 36.36 | 1.94 |
871 | 926 | 9.574516 | AAGTAATTAAGAAAGAGCAAGAGGAAA | 57.425 | 29.630 | 0.00 | 0.00 | 0.00 | 3.13 |
882 | 937 | 2.227626 | GCAAGAGGAAAAAGGAGAGCAC | 59.772 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
1040 | 1095 | 3.814906 | CCACCACCACCACCACCA | 61.815 | 66.667 | 0.00 | 0.00 | 0.00 | 4.17 |
1041 | 1096 | 2.518349 | CACCACCACCACCACCAC | 60.518 | 66.667 | 0.00 | 0.00 | 0.00 | 4.16 |
1042 | 1097 | 3.816090 | ACCACCACCACCACCACC | 61.816 | 66.667 | 0.00 | 0.00 | 0.00 | 4.61 |
1074 | 1129 | 4.069232 | CTCTCCTCCGCACCGCAA | 62.069 | 66.667 | 0.00 | 0.00 | 0.00 | 4.85 |
1077 | 1132 | 3.958147 | CTCCTCCGCACCGCAACAT | 62.958 | 63.158 | 0.00 | 0.00 | 0.00 | 2.71 |
1480 | 1540 | 5.184671 | GCAGATTCTGTTTCCATTTCCTCTT | 59.815 | 40.000 | 14.90 | 0.00 | 33.43 | 2.85 |
1489 | 1549 | 6.209391 | TGTTTCCATTTCCTCTTCAGATTTCC | 59.791 | 38.462 | 0.00 | 0.00 | 0.00 | 3.13 |
1490 | 1550 | 5.786121 | TCCATTTCCTCTTCAGATTTCCT | 57.214 | 39.130 | 0.00 | 0.00 | 0.00 | 3.36 |
1492 | 1552 | 4.886489 | CCATTTCCTCTTCAGATTTCCTCC | 59.114 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
1493 | 1553 | 5.503927 | CATTTCCTCTTCAGATTTCCTCCA | 58.496 | 41.667 | 0.00 | 0.00 | 0.00 | 3.86 |
1532 | 1594 | 1.203087 | TCAACCCCGTCTCTTACTCCA | 60.203 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
1541 | 1603 | 3.865745 | CGTCTCTTACTCCATGCGATTTT | 59.134 | 43.478 | 0.00 | 0.00 | 0.00 | 1.82 |
1584 | 1646 | 1.697284 | CTGATCCCTCGATCCAGTGA | 58.303 | 55.000 | 0.00 | 0.00 | 43.82 | 3.41 |
1595 | 1657 | 1.062587 | GATCCAGTGATTCGTTTGGCG | 59.937 | 52.381 | 0.00 | 0.00 | 43.01 | 5.69 |
2006 | 2071 | 9.801873 | CAACAGGTTGGATTTTATATTAACCAG | 57.198 | 33.333 | 4.25 | 0.00 | 39.90 | 4.00 |
2291 | 2356 | 0.804989 | GCTACCGCTGCAAAGACAAT | 59.195 | 50.000 | 0.00 | 0.00 | 0.00 | 2.71 |
2294 | 2359 | 1.538047 | ACCGCTGCAAAGACAATGAT | 58.462 | 45.000 | 0.00 | 0.00 | 0.00 | 2.45 |
2295 | 2360 | 1.470098 | ACCGCTGCAAAGACAATGATC | 59.530 | 47.619 | 0.00 | 0.00 | 0.00 | 2.92 |
2310 | 2375 | 3.669251 | ATGATCTTTAGCCGCTAGTCC | 57.331 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 |
2328 | 2393 | 6.757478 | GCTAGTCCCTGTCTTATTACTTTCAC | 59.243 | 42.308 | 0.00 | 0.00 | 0.00 | 3.18 |
2331 | 2396 | 3.621715 | CCCTGTCTTATTACTTTCACGGC | 59.378 | 47.826 | 0.00 | 0.00 | 0.00 | 5.68 |
2346 | 2411 | 0.981183 | ACGGCAGAAGTGGTCCAATA | 59.019 | 50.000 | 0.00 | 0.00 | 0.00 | 1.90 |
2701 | 2769 | 0.037232 | GACCTCGTGGACCTTCAAGG | 60.037 | 60.000 | 11.17 | 0.22 | 37.91 | 3.61 |
2718 | 2786 | 0.392998 | AGGGCTGCATAGGTCGTTTG | 60.393 | 55.000 | 0.50 | 0.00 | 0.00 | 2.93 |
2719 | 2787 | 1.429423 | GGCTGCATAGGTCGTTTGC | 59.571 | 57.895 | 0.50 | 1.54 | 36.91 | 3.68 |
2720 | 2788 | 1.026718 | GGCTGCATAGGTCGTTTGCT | 61.027 | 55.000 | 0.50 | 0.00 | 37.28 | 3.91 |
2721 | 2789 | 1.651987 | GCTGCATAGGTCGTTTGCTA | 58.348 | 50.000 | 8.97 | 0.00 | 37.28 | 3.49 |
2954 | 3032 | 5.163834 | TGTTAACGGAATAAACATCGAAGCC | 60.164 | 40.000 | 0.26 | 0.00 | 0.00 | 4.35 |
3000 | 3078 | 3.755378 | CCAGCCTTTGTATATGCTCCATC | 59.245 | 47.826 | 0.00 | 0.00 | 30.08 | 3.51 |
3025 | 3103 | 1.618861 | CCTTGACAAGTAGCGTCTCG | 58.381 | 55.000 | 14.03 | 0.00 | 34.37 | 4.04 |
3122 | 3200 | 0.892755 | TCTAGGTGTCCGCATTTCGT | 59.107 | 50.000 | 0.00 | 0.00 | 36.19 | 3.85 |
3272 | 3350 | 1.967066 | CTCAGGTCACTCAGTGGAAGT | 59.033 | 52.381 | 4.57 | 0.00 | 33.87 | 3.01 |
3294 | 3372 | 7.369803 | AGTATAACTTTTGTGCAGAGTGATG | 57.630 | 36.000 | 0.00 | 0.00 | 0.00 | 3.07 |
3487 | 3579 | 1.009829 | GAGGTAAGAATGGCTGCGTG | 58.990 | 55.000 | 0.00 | 0.00 | 0.00 | 5.34 |
3814 | 3923 | 1.824852 | AGTTCCCGGCATGGAAATTTC | 59.175 | 47.619 | 9.83 | 9.83 | 45.67 | 2.17 |
3836 | 3945 | 8.684386 | TTTCAGTGGTATGATTTCTTAACACA | 57.316 | 30.769 | 18.40 | 2.56 | 42.94 | 3.72 |
3837 | 3946 | 8.862325 | TTCAGTGGTATGATTTCTTAACACAT | 57.138 | 30.769 | 18.40 | 6.28 | 42.94 | 3.21 |
3838 | 3947 | 9.952030 | TTCAGTGGTATGATTTCTTAACACATA | 57.048 | 29.630 | 18.40 | 7.64 | 42.94 | 2.29 |
3839 | 3948 | 9.378551 | TCAGTGGTATGATTTCTTAACACATAC | 57.621 | 33.333 | 18.40 | 0.00 | 42.94 | 2.39 |
3840 | 3949 | 9.383519 | CAGTGGTATGATTTCTTAACACATACT | 57.616 | 33.333 | 18.40 | 1.75 | 42.94 | 2.12 |
3924 | 4717 | 2.369860 | TCAACTGTCTCTGTTGGATGCT | 59.630 | 45.455 | 15.51 | 0.00 | 41.43 | 3.79 |
4049 | 4842 | 4.747605 | GCTGCAAGTTTTATTTTTCCGGAA | 59.252 | 37.500 | 14.35 | 14.35 | 35.30 | 4.30 |
4074 | 4867 | 6.369065 | AGCTGTTGCAAGTTTACTACACTATC | 59.631 | 38.462 | 0.00 | 0.00 | 42.74 | 2.08 |
4254 | 5047 | 3.900966 | TGATGCTGCAGACTACTTCAT | 57.099 | 42.857 | 20.43 | 9.28 | 0.00 | 2.57 |
4287 | 5080 | 4.694037 | CAGCAGATCTTCAACAATGTCAGA | 59.306 | 41.667 | 0.00 | 0.00 | 0.00 | 3.27 |
4693 | 5486 | 3.741344 | CAGTAACAGTAGTCACCAGTTGC | 59.259 | 47.826 | 0.00 | 0.00 | 0.00 | 4.17 |
4727 | 5520 | 2.225242 | TGGCCACATGGGAGTTAACATT | 60.225 | 45.455 | 0.00 | 0.00 | 40.01 | 2.71 |
4777 | 5570 | 8.986477 | ATTGAGTTCTGCCACAAATTTATTAC | 57.014 | 30.769 | 0.00 | 0.00 | 0.00 | 1.89 |
4860 | 5653 | 4.748277 | TTTTTATCTGGTACTCCCTCCG | 57.252 | 45.455 | 0.00 | 0.00 | 0.00 | 4.63 |
4861 | 5654 | 3.393426 | TTTATCTGGTACTCCCTCCGT | 57.607 | 47.619 | 0.00 | 0.00 | 0.00 | 4.69 |
4862 | 5655 | 4.524802 | TTTATCTGGTACTCCCTCCGTA | 57.475 | 45.455 | 0.00 | 0.00 | 0.00 | 4.02 |
4863 | 5656 | 4.524802 | TTATCTGGTACTCCCTCCGTAA | 57.475 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
4864 | 5657 | 2.905415 | TCTGGTACTCCCTCCGTAAA | 57.095 | 50.000 | 0.00 | 0.00 | 0.00 | 2.01 |
4865 | 5658 | 2.450476 | TCTGGTACTCCCTCCGTAAAC | 58.550 | 52.381 | 0.00 | 0.00 | 0.00 | 2.01 |
4866 | 5659 | 2.042162 | TCTGGTACTCCCTCCGTAAACT | 59.958 | 50.000 | 0.00 | 0.00 | 0.00 | 2.66 |
4867 | 5660 | 3.266772 | TCTGGTACTCCCTCCGTAAACTA | 59.733 | 47.826 | 0.00 | 0.00 | 0.00 | 2.24 |
4868 | 5661 | 4.019174 | CTGGTACTCCCTCCGTAAACTAA | 58.981 | 47.826 | 0.00 | 0.00 | 0.00 | 2.24 |
4869 | 5662 | 4.613437 | TGGTACTCCCTCCGTAAACTAAT | 58.387 | 43.478 | 0.00 | 0.00 | 0.00 | 1.73 |
4870 | 5663 | 5.765510 | TGGTACTCCCTCCGTAAACTAATA | 58.234 | 41.667 | 0.00 | 0.00 | 0.00 | 0.98 |
4871 | 5664 | 6.376248 | TGGTACTCCCTCCGTAAACTAATAT | 58.624 | 40.000 | 0.00 | 0.00 | 0.00 | 1.28 |
4872 | 5665 | 7.526041 | TGGTACTCCCTCCGTAAACTAATATA | 58.474 | 38.462 | 0.00 | 0.00 | 0.00 | 0.86 |
4873 | 5666 | 8.004215 | TGGTACTCCCTCCGTAAACTAATATAA | 58.996 | 37.037 | 0.00 | 0.00 | 0.00 | 0.98 |
4874 | 5667 | 8.518702 | GGTACTCCCTCCGTAAACTAATATAAG | 58.481 | 40.741 | 0.00 | 0.00 | 0.00 | 1.73 |
4875 | 5668 | 9.289782 | GTACTCCCTCCGTAAACTAATATAAGA | 57.710 | 37.037 | 0.00 | 0.00 | 0.00 | 2.10 |
4876 | 5669 | 8.406730 | ACTCCCTCCGTAAACTAATATAAGAG | 57.593 | 38.462 | 0.00 | 0.00 | 0.00 | 2.85 |
4877 | 5670 | 7.039853 | ACTCCCTCCGTAAACTAATATAAGAGC | 60.040 | 40.741 | 0.00 | 0.00 | 0.00 | 4.09 |
4878 | 5671 | 6.072286 | TCCCTCCGTAAACTAATATAAGAGCG | 60.072 | 42.308 | 0.00 | 0.00 | 0.00 | 5.03 |
4879 | 5672 | 6.294397 | CCCTCCGTAAACTAATATAAGAGCGT | 60.294 | 42.308 | 0.00 | 0.00 | 0.00 | 5.07 |
4880 | 5673 | 7.144000 | CCTCCGTAAACTAATATAAGAGCGTT | 58.856 | 38.462 | 0.00 | 0.00 | 0.00 | 4.84 |
4881 | 5674 | 7.650903 | CCTCCGTAAACTAATATAAGAGCGTTT | 59.349 | 37.037 | 0.00 | 0.00 | 0.00 | 3.60 |
4882 | 5675 | 9.669353 | CTCCGTAAACTAATATAAGAGCGTTTA | 57.331 | 33.333 | 0.00 | 0.00 | 0.00 | 2.01 |
4883 | 5676 | 9.669353 | TCCGTAAACTAATATAAGAGCGTTTAG | 57.331 | 33.333 | 0.00 | 0.00 | 30.36 | 1.85 |
4884 | 5677 | 9.669353 | CCGTAAACTAATATAAGAGCGTTTAGA | 57.331 | 33.333 | 0.00 | 0.00 | 30.36 | 2.10 |
4896 | 5689 | 9.953697 | ATAAGAGCGTTTAGATCACTAAAGTAG | 57.046 | 33.333 | 0.00 | 0.00 | 45.42 | 2.57 |
4897 | 5690 | 7.393841 | AGAGCGTTTAGATCACTAAAGTAGT | 57.606 | 36.000 | 0.00 | 0.00 | 45.42 | 2.73 |
4931 | 5724 | 9.710818 | ACACTCTTATATTAGTTTACAGAGGGA | 57.289 | 33.333 | 2.59 | 0.00 | 34.50 | 4.20 |
4933 | 5726 | 9.939424 | ACTCTTATATTAGTTTACAGAGGGAGT | 57.061 | 33.333 | 0.00 | 0.00 | 32.21 | 3.85 |
5974 | 6776 | 2.497675 | ACTTGGACTACGATGCAGACAT | 59.502 | 45.455 | 0.00 | 0.00 | 39.98 | 3.06 |
6064 | 6866 | 9.768662 | TTTAAGGAATAGGTCGTGTAAATATCC | 57.231 | 33.333 | 0.00 | 0.00 | 0.00 | 2.59 |
6108 | 6910 | 2.208349 | AGACCCCTGCCCTGAACT | 59.792 | 61.111 | 0.00 | 0.00 | 0.00 | 3.01 |
6189 | 6991 | 7.902387 | ACTATTTCATTCTCATGATGATCCG | 57.098 | 36.000 | 0.00 | 0.00 | 39.28 | 4.18 |
6191 | 6993 | 6.798315 | ATTTCATTCTCATGATGATCCGAC | 57.202 | 37.500 | 0.00 | 0.00 | 39.28 | 4.79 |
6192 | 6994 | 4.942761 | TCATTCTCATGATGATCCGACA | 57.057 | 40.909 | 0.00 | 0.00 | 34.22 | 4.35 |
6225 | 7027 | 6.597562 | TGGGGTGCTTACATATTAAAGTAGG | 58.402 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
6285 | 7093 | 4.525100 | TGCTATTGTAAACAGTTTTCCCCC | 59.475 | 41.667 | 3.25 | 0.00 | 0.00 | 5.40 |
6324 | 7132 | 3.751698 | GTGTAACTGTTTCTGGTGGATCC | 59.248 | 47.826 | 4.20 | 4.20 | 0.00 | 3.36 |
6595 | 7403 | 1.673168 | CCAGAGCTTCAGGTATTGGC | 58.327 | 55.000 | 0.00 | 0.00 | 0.00 | 4.52 |
6761 | 7569 | 4.161565 | ACGGTGAGTATGAGAAGGCAAATA | 59.838 | 41.667 | 0.00 | 0.00 | 0.00 | 1.40 |
6816 | 7624 | 3.850752 | TGGTATGATCTCTTCCTCCCTC | 58.149 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
6847 | 7655 | 5.831525 | TGTCTGTCTGAGAAAGTTGGTACTA | 59.168 | 40.000 | 0.00 | 0.00 | 33.17 | 1.82 |
6893 | 7806 | 7.998767 | CACGCAGTTTCACTATATCTATTTTCG | 59.001 | 37.037 | 0.00 | 0.00 | 41.61 | 3.46 |
6902 | 7815 | 8.068380 | TCACTATATCTATTTTCGTCACAGTCG | 58.932 | 37.037 | 0.00 | 0.00 | 0.00 | 4.18 |
6941 | 7854 | 1.087501 | GTTGGAAGCCTCGATGGTTC | 58.912 | 55.000 | 20.21 | 20.21 | 38.35 | 3.62 |
6953 | 7866 | 2.835701 | GATGGTTCGAGCAGGACGCA | 62.836 | 60.000 | 0.53 | 0.00 | 46.13 | 5.24 |
7002 | 7915 | 0.391263 | GTACTGGGAAGCAAGGGACG | 60.391 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
7028 | 7941 | 1.528824 | CTGGGACGGATGCCTCAAT | 59.471 | 57.895 | 0.00 | 0.00 | 37.19 | 2.57 |
7060 | 7973 | 3.978687 | AGTTCTCAGAAACGTGAACGAT | 58.021 | 40.909 | 10.26 | 0.00 | 41.81 | 3.73 |
7113 | 8026 | 0.735978 | AACTGCAATGCGACGATCGA | 60.736 | 50.000 | 24.34 | 0.00 | 43.74 | 3.59 |
7216 | 8129 | 7.882271 | GTGGATATAGAGGCATTGAAGAAGAAT | 59.118 | 37.037 | 0.00 | 0.00 | 0.00 | 2.40 |
7635 | 8551 | 7.775397 | TTTCCTTTGTAGTAATATACGTGGC | 57.225 | 36.000 | 0.00 | 0.00 | 0.00 | 5.01 |
7636 | 8552 | 5.846203 | TCCTTTGTAGTAATATACGTGGCC | 58.154 | 41.667 | 0.00 | 0.00 | 0.00 | 5.36 |
7637 | 8553 | 5.599656 | TCCTTTGTAGTAATATACGTGGCCT | 59.400 | 40.000 | 3.32 | 0.00 | 0.00 | 5.19 |
7638 | 8554 | 5.924825 | CCTTTGTAGTAATATACGTGGCCTC | 59.075 | 44.000 | 3.32 | 0.00 | 0.00 | 4.70 |
7639 | 8555 | 6.239232 | CCTTTGTAGTAATATACGTGGCCTCT | 60.239 | 42.308 | 3.32 | 0.00 | 0.00 | 3.69 |
7640 | 8556 | 6.720112 | TTGTAGTAATATACGTGGCCTCTT | 57.280 | 37.500 | 3.32 | 0.00 | 0.00 | 2.85 |
7641 | 8557 | 6.720112 | TGTAGTAATATACGTGGCCTCTTT | 57.280 | 37.500 | 3.32 | 0.00 | 0.00 | 2.52 |
7642 | 8558 | 7.116075 | TGTAGTAATATACGTGGCCTCTTTT | 57.884 | 36.000 | 3.32 | 0.00 | 0.00 | 2.27 |
7643 | 8559 | 6.982141 | TGTAGTAATATACGTGGCCTCTTTTG | 59.018 | 38.462 | 3.32 | 0.00 | 0.00 | 2.44 |
7644 | 8560 | 5.365619 | AGTAATATACGTGGCCTCTTTTGG | 58.634 | 41.667 | 3.32 | 0.00 | 0.00 | 3.28 |
7645 | 8561 | 3.926058 | ATATACGTGGCCTCTTTTGGT | 57.074 | 42.857 | 3.32 | 0.00 | 0.00 | 3.67 |
7646 | 8562 | 2.579410 | ATACGTGGCCTCTTTTGGTT | 57.421 | 45.000 | 3.32 | 0.00 | 0.00 | 3.67 |
7647 | 8563 | 1.886886 | TACGTGGCCTCTTTTGGTTC | 58.113 | 50.000 | 3.32 | 0.00 | 0.00 | 3.62 |
7648 | 8564 | 0.106918 | ACGTGGCCTCTTTTGGTTCA | 60.107 | 50.000 | 3.32 | 0.00 | 0.00 | 3.18 |
7649 | 8565 | 1.247567 | CGTGGCCTCTTTTGGTTCAT | 58.752 | 50.000 | 3.32 | 0.00 | 0.00 | 2.57 |
7650 | 8566 | 2.224670 | ACGTGGCCTCTTTTGGTTCATA | 60.225 | 45.455 | 3.32 | 0.00 | 0.00 | 2.15 |
7651 | 8567 | 2.420022 | CGTGGCCTCTTTTGGTTCATAG | 59.580 | 50.000 | 3.32 | 0.00 | 0.00 | 2.23 |
7652 | 8568 | 2.755103 | GTGGCCTCTTTTGGTTCATAGG | 59.245 | 50.000 | 3.32 | 0.00 | 0.00 | 2.57 |
7653 | 8569 | 2.647299 | TGGCCTCTTTTGGTTCATAGGA | 59.353 | 45.455 | 3.32 | 0.00 | 0.00 | 2.94 |
7654 | 8570 | 3.269381 | TGGCCTCTTTTGGTTCATAGGAT | 59.731 | 43.478 | 3.32 | 0.00 | 0.00 | 3.24 |
7655 | 8571 | 4.476846 | TGGCCTCTTTTGGTTCATAGGATA | 59.523 | 41.667 | 3.32 | 0.00 | 0.00 | 2.59 |
7656 | 8572 | 5.066593 | GGCCTCTTTTGGTTCATAGGATAG | 58.933 | 45.833 | 0.00 | 0.00 | 0.00 | 2.08 |
7657 | 8573 | 5.066593 | GCCTCTTTTGGTTCATAGGATAGG | 58.933 | 45.833 | 0.00 | 0.00 | 0.00 | 2.57 |
7658 | 8574 | 5.163195 | GCCTCTTTTGGTTCATAGGATAGGA | 60.163 | 44.000 | 0.00 | 0.00 | 0.00 | 2.94 |
7659 | 8575 | 6.466470 | GCCTCTTTTGGTTCATAGGATAGGAT | 60.466 | 42.308 | 0.00 | 0.00 | 28.27 | 3.24 |
7660 | 8576 | 7.521669 | CCTCTTTTGGTTCATAGGATAGGATT | 58.478 | 38.462 | 0.00 | 0.00 | 28.27 | 3.01 |
7661 | 8577 | 8.660435 | CCTCTTTTGGTTCATAGGATAGGATTA | 58.340 | 37.037 | 0.00 | 0.00 | 28.27 | 1.75 |
7668 | 8584 | 9.439461 | TGGTTCATAGGATAGGATTATCATAGG | 57.561 | 37.037 | 0.00 | 0.00 | 36.37 | 2.57 |
7669 | 8585 | 9.661954 | GGTTCATAGGATAGGATTATCATAGGA | 57.338 | 37.037 | 0.00 | 1.09 | 39.88 | 2.94 |
7687 | 8603 | 9.621239 | ATCATAGGAATAGGAATCTTGTAGGAA | 57.379 | 33.333 | 0.00 | 0.00 | 0.00 | 3.36 |
7688 | 8604 | 9.447279 | TCATAGGAATAGGAATCTTGTAGGAAA | 57.553 | 33.333 | 0.00 | 0.00 | 0.00 | 3.13 |
7691 | 8607 | 8.337118 | AGGAATAGGAATCTTGTAGGAAATGA | 57.663 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
7692 | 8608 | 8.781951 | AGGAATAGGAATCTTGTAGGAAATGAA | 58.218 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
7693 | 8609 | 9.408648 | GGAATAGGAATCTTGTAGGAAATGAAA | 57.591 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
7697 | 8613 | 8.286191 | AGGAATCTTGTAGGAAATGAAATGAC | 57.714 | 34.615 | 0.00 | 0.00 | 0.00 | 3.06 |
7698 | 8614 | 7.890127 | AGGAATCTTGTAGGAAATGAAATGACA | 59.110 | 33.333 | 0.00 | 0.00 | 0.00 | 3.58 |
7699 | 8615 | 8.689972 | GGAATCTTGTAGGAAATGAAATGACAT | 58.310 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
7700 | 8616 | 9.512435 | GAATCTTGTAGGAAATGAAATGACATG | 57.488 | 33.333 | 0.00 | 0.00 | 0.00 | 3.21 |
7701 | 8617 | 8.585471 | ATCTTGTAGGAAATGAAATGACATGT | 57.415 | 30.769 | 0.00 | 0.00 | 0.00 | 3.21 |
7702 | 8618 | 9.685276 | ATCTTGTAGGAAATGAAATGACATGTA | 57.315 | 29.630 | 0.00 | 0.00 | 0.00 | 2.29 |
7703 | 8619 | 9.685276 | TCTTGTAGGAAATGAAATGACATGTAT | 57.315 | 29.630 | 0.00 | 0.00 | 0.00 | 2.29 |
7704 | 8620 | 9.941664 | CTTGTAGGAAATGAAATGACATGTATC | 57.058 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
7705 | 8621 | 9.685276 | TTGTAGGAAATGAAATGACATGTATCT | 57.315 | 29.630 | 0.00 | 0.00 | 0.00 | 1.98 |
7706 | 8622 | 9.330063 | TGTAGGAAATGAAATGACATGTATCTC | 57.670 | 33.333 | 0.00 | 0.00 | 0.00 | 2.75 |
7707 | 8623 | 9.330063 | GTAGGAAATGAAATGACATGTATCTCA | 57.670 | 33.333 | 0.00 | 0.00 | 0.00 | 3.27 |
7708 | 8624 | 8.812513 | AGGAAATGAAATGACATGTATCTCAA | 57.187 | 30.769 | 0.00 | 0.00 | 0.00 | 3.02 |
7709 | 8625 | 9.246670 | AGGAAATGAAATGACATGTATCTCAAA | 57.753 | 29.630 | 0.00 | 0.00 | 0.00 | 2.69 |
7713 | 8629 | 8.991783 | ATGAAATGACATGTATCTCAAATCCT | 57.008 | 30.769 | 0.00 | 0.00 | 0.00 | 3.24 |
7718 | 8634 | 9.722184 | AATGACATGTATCTCAAATCCTATGAG | 57.278 | 33.333 | 0.00 | 0.00 | 44.53 | 2.90 |
7719 | 8635 | 8.255111 | TGACATGTATCTCAAATCCTATGAGT | 57.745 | 34.615 | 0.00 | 0.00 | 43.77 | 3.41 |
7720 | 8636 | 9.367160 | TGACATGTATCTCAAATCCTATGAGTA | 57.633 | 33.333 | 0.00 | 0.00 | 43.77 | 2.59 |
7721 | 8637 | 9.853555 | GACATGTATCTCAAATCCTATGAGTAG | 57.146 | 37.037 | 0.00 | 0.00 | 43.77 | 2.57 |
7738 | 8654 | 9.703892 | CTATGAGTAGGAATAGGAAACAAGATG | 57.296 | 37.037 | 0.00 | 0.00 | 0.00 | 2.90 |
7739 | 8655 | 7.496346 | TGAGTAGGAATAGGAAACAAGATGT | 57.504 | 36.000 | 0.00 | 0.00 | 0.00 | 3.06 |
7740 | 8656 | 7.556844 | TGAGTAGGAATAGGAAACAAGATGTC | 58.443 | 38.462 | 0.00 | 0.00 | 0.00 | 3.06 |
7741 | 8657 | 7.180229 | TGAGTAGGAATAGGAAACAAGATGTCA | 59.820 | 37.037 | 0.00 | 0.00 | 0.00 | 3.58 |
7742 | 8658 | 8.095452 | AGTAGGAATAGGAAACAAGATGTCAT | 57.905 | 34.615 | 0.00 | 0.00 | 0.00 | 3.06 |
7743 | 8659 | 8.552296 | AGTAGGAATAGGAAACAAGATGTCATT | 58.448 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
7744 | 8660 | 9.178758 | GTAGGAATAGGAAACAAGATGTCATTT | 57.821 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
7745 | 8661 | 8.059798 | AGGAATAGGAAACAAGATGTCATTTG | 57.940 | 34.615 | 0.00 | 0.00 | 0.00 | 2.32 |
7746 | 8662 | 7.890127 | AGGAATAGGAAACAAGATGTCATTTGA | 59.110 | 33.333 | 12.03 | 0.00 | 0.00 | 2.69 |
7747 | 8663 | 8.689972 | GGAATAGGAAACAAGATGTCATTTGAT | 58.310 | 33.333 | 12.03 | 1.75 | 0.00 | 2.57 |
7749 | 8665 | 9.865321 | AATAGGAAACAAGATGTCATTTGATTG | 57.135 | 29.630 | 12.03 | 6.95 | 0.00 | 2.67 |
7750 | 8666 | 7.528996 | AGGAAACAAGATGTCATTTGATTGA | 57.471 | 32.000 | 12.03 | 0.00 | 0.00 | 2.57 |
7751 | 8667 | 7.373493 | AGGAAACAAGATGTCATTTGATTGAC | 58.627 | 34.615 | 12.03 | 0.00 | 45.05 | 3.18 |
7760 | 8676 | 5.452078 | GTCATTTGATTGACACCAAAGGA | 57.548 | 39.130 | 10.82 | 10.82 | 44.38 | 3.36 |
7761 | 8677 | 6.029346 | GTCATTTGATTGACACCAAAGGAT | 57.971 | 37.500 | 15.40 | 0.00 | 42.42 | 3.24 |
7762 | 8678 | 6.458210 | GTCATTTGATTGACACCAAAGGATT | 58.542 | 36.000 | 15.40 | 0.00 | 42.42 | 3.01 |
7763 | 8679 | 6.930722 | GTCATTTGATTGACACCAAAGGATTT | 59.069 | 34.615 | 15.40 | 0.00 | 42.42 | 2.17 |
7764 | 8680 | 7.442062 | GTCATTTGATTGACACCAAAGGATTTT | 59.558 | 33.333 | 15.40 | 0.00 | 42.42 | 1.82 |
7765 | 8681 | 7.992033 | TCATTTGATTGACACCAAAGGATTTTT | 59.008 | 29.630 | 10.82 | 0.00 | 37.90 | 1.94 |
7816 | 8732 | 7.843490 | TTTCTTACGAAATGTGAAGGATAGG | 57.157 | 36.000 | 0.00 | 0.00 | 34.35 | 2.57 |
7817 | 8733 | 6.785337 | TCTTACGAAATGTGAAGGATAGGA | 57.215 | 37.500 | 0.00 | 0.00 | 0.00 | 2.94 |
7818 | 8734 | 7.177832 | TCTTACGAAATGTGAAGGATAGGAA | 57.822 | 36.000 | 0.00 | 0.00 | 0.00 | 3.36 |
7819 | 8735 | 7.039882 | TCTTACGAAATGTGAAGGATAGGAAC | 58.960 | 38.462 | 0.00 | 0.00 | 0.00 | 3.62 |
7820 | 8736 | 4.514401 | ACGAAATGTGAAGGATAGGAACC | 58.486 | 43.478 | 0.00 | 0.00 | 0.00 | 3.62 |
7821 | 8737 | 4.019681 | ACGAAATGTGAAGGATAGGAACCA | 60.020 | 41.667 | 0.00 | 0.00 | 0.00 | 3.67 |
7822 | 8738 | 4.941263 | CGAAATGTGAAGGATAGGAACCAA | 59.059 | 41.667 | 0.00 | 0.00 | 0.00 | 3.67 |
7823 | 8739 | 5.590259 | CGAAATGTGAAGGATAGGAACCAAT | 59.410 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
7824 | 8740 | 6.238484 | CGAAATGTGAAGGATAGGAACCAATC | 60.238 | 42.308 | 0.00 | 0.00 | 0.00 | 2.67 |
7863 | 8779 | 7.751768 | GAATCTATTCCTATGAACCAAAGGG | 57.248 | 40.000 | 0.00 | 0.00 | 41.29 | 3.95 |
7864 | 8780 | 5.048846 | TCTATTCCTATGAACCAAAGGGC | 57.951 | 43.478 | 0.00 | 0.00 | 37.90 | 5.19 |
7865 | 8781 | 4.726825 | TCTATTCCTATGAACCAAAGGGCT | 59.273 | 41.667 | 0.00 | 0.00 | 37.90 | 5.19 |
7866 | 8782 | 3.366052 | TTCCTATGAACCAAAGGGCTC | 57.634 | 47.619 | 0.00 | 0.00 | 37.90 | 4.70 |
7867 | 8783 | 2.562296 | TCCTATGAACCAAAGGGCTCT | 58.438 | 47.619 | 0.00 | 0.00 | 37.90 | 4.09 |
7868 | 8784 | 3.731431 | TCCTATGAACCAAAGGGCTCTA | 58.269 | 45.455 | 0.00 | 0.00 | 37.90 | 2.43 |
7869 | 8785 | 4.108570 | TCCTATGAACCAAAGGGCTCTAA | 58.891 | 43.478 | 0.00 | 0.00 | 37.90 | 2.10 |
7870 | 8786 | 4.538490 | TCCTATGAACCAAAGGGCTCTAAA | 59.462 | 41.667 | 0.00 | 0.00 | 37.90 | 1.85 |
7871 | 8787 | 4.884164 | CCTATGAACCAAAGGGCTCTAAAG | 59.116 | 45.833 | 0.00 | 0.00 | 37.90 | 1.85 |
7872 | 8788 | 3.154827 | TGAACCAAAGGGCTCTAAAGG | 57.845 | 47.619 | 0.00 | 0.00 | 37.90 | 3.11 |
7873 | 8789 | 2.714250 | TGAACCAAAGGGCTCTAAAGGA | 59.286 | 45.455 | 5.94 | 0.00 | 37.90 | 3.36 |
7874 | 8790 | 3.139397 | TGAACCAAAGGGCTCTAAAGGAA | 59.861 | 43.478 | 5.94 | 0.00 | 37.90 | 3.36 |
7875 | 8791 | 3.895704 | ACCAAAGGGCTCTAAAGGAAA | 57.104 | 42.857 | 5.94 | 0.00 | 37.90 | 3.13 |
7876 | 8792 | 4.193240 | ACCAAAGGGCTCTAAAGGAAAA | 57.807 | 40.909 | 5.94 | 0.00 | 37.90 | 2.29 |
7877 | 8793 | 4.752063 | ACCAAAGGGCTCTAAAGGAAAAT | 58.248 | 39.130 | 5.94 | 0.00 | 37.90 | 1.82 |
7878 | 8794 | 5.155161 | ACCAAAGGGCTCTAAAGGAAAATT | 58.845 | 37.500 | 5.94 | 0.00 | 37.90 | 1.82 |
7879 | 8795 | 5.606749 | ACCAAAGGGCTCTAAAGGAAAATTT | 59.393 | 36.000 | 5.94 | 0.00 | 37.90 | 1.82 |
7880 | 8796 | 6.101150 | ACCAAAGGGCTCTAAAGGAAAATTTT | 59.899 | 34.615 | 2.28 | 2.28 | 37.90 | 1.82 |
7881 | 8797 | 6.998074 | CCAAAGGGCTCTAAAGGAAAATTTTT | 59.002 | 34.615 | 4.63 | 0.00 | 0.00 | 1.94 |
7966 | 8882 | 7.928307 | TTAGCTAATATATTACTCCGTCCGT | 57.072 | 36.000 | 0.86 | 0.00 | 0.00 | 4.69 |
7975 | 8891 | 1.589803 | ACTCCGTCCGTTCCAAAAAG | 58.410 | 50.000 | 0.00 | 0.00 | 0.00 | 2.27 |
7994 | 8912 | 3.027974 | AGAGTGTCGTGGCTTTAGTTC | 57.972 | 47.619 | 0.00 | 0.00 | 0.00 | 3.01 |
8025 | 8943 | 3.424962 | GCTAAAGCTGAACTAAAGCCACG | 60.425 | 47.826 | 0.00 | 0.00 | 41.82 | 4.94 |
8030 | 8948 | 1.798813 | CTGAACTAAAGCCACGACACC | 59.201 | 52.381 | 0.00 | 0.00 | 0.00 | 4.16 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
45 | 46 | 7.612065 | TGTGGCAATAGACCAGTAGTAATAT | 57.388 | 36.000 | 0.00 | 0.00 | 38.04 | 1.28 |
54 | 55 | 2.357009 | GCAAGATGTGGCAATAGACCAG | 59.643 | 50.000 | 0.00 | 0.00 | 38.04 | 4.00 |
89 | 95 | 8.515414 | GTTTGTTCCATATAAAAAGAGCTCACT | 58.485 | 33.333 | 17.77 | 0.00 | 0.00 | 3.41 |
112 | 118 | 4.896482 | ACGGAGAGCAAGAGGATATAGTTT | 59.104 | 41.667 | 0.00 | 0.00 | 0.00 | 2.66 |
115 | 121 | 3.823873 | ACACGGAGAGCAAGAGGATATAG | 59.176 | 47.826 | 0.00 | 0.00 | 0.00 | 1.31 |
132 | 138 | 1.539827 | GGGATTTTTGAGGACACACGG | 59.460 | 52.381 | 0.00 | 0.00 | 0.00 | 4.94 |
135 | 141 | 3.573538 | CACATGGGATTTTTGAGGACACA | 59.426 | 43.478 | 0.00 | 0.00 | 0.00 | 3.72 |
143 | 149 | 3.258872 | TCTCTTGCCACATGGGATTTTTG | 59.741 | 43.478 | 0.00 | 0.00 | 40.01 | 2.44 |
152 | 158 | 4.758674 | TCTCTTTTCTTCTCTTGCCACATG | 59.241 | 41.667 | 0.00 | 0.00 | 0.00 | 3.21 |
154 | 160 | 4.422073 | TCTCTTTTCTTCTCTTGCCACA | 57.578 | 40.909 | 0.00 | 0.00 | 0.00 | 4.17 |
169 | 177 | 3.442977 | GCCATGTCATGCTTCTTCTCTTT | 59.557 | 43.478 | 7.35 | 0.00 | 0.00 | 2.52 |
266 | 281 | 3.486875 | GCAGCGTTGTACAAAACACTCTT | 60.487 | 43.478 | 10.51 | 0.00 | 38.00 | 2.85 |
267 | 282 | 2.031683 | GCAGCGTTGTACAAAACACTCT | 59.968 | 45.455 | 10.51 | 0.00 | 38.00 | 3.24 |
309 | 332 | 4.235372 | CCCCCTTCTATGAGGTGACTAAT | 58.765 | 47.826 | 0.00 | 0.00 | 44.43 | 1.73 |
310 | 333 | 3.654273 | CCCCCTTCTATGAGGTGACTAA | 58.346 | 50.000 | 0.00 | 0.00 | 44.43 | 2.24 |
311 | 334 | 3.330126 | CCCCCTTCTATGAGGTGACTA | 57.670 | 52.381 | 0.00 | 0.00 | 44.43 | 2.59 |
336 | 359 | 7.477864 | TGAATAATTACATGGATTATGCCCCT | 58.522 | 34.615 | 13.90 | 2.82 | 40.59 | 4.79 |
338 | 361 | 8.246180 | CACTGAATAATTACATGGATTATGCCC | 58.754 | 37.037 | 13.90 | 9.16 | 40.59 | 5.36 |
339 | 362 | 8.796475 | ACACTGAATAATTACATGGATTATGCC | 58.204 | 33.333 | 13.90 | 10.78 | 40.59 | 4.40 |
443 | 466 | 9.247126 | CTTTCATGTGATACAATCAAACAAACA | 57.753 | 29.630 | 0.00 | 0.00 | 41.69 | 2.83 |
505 | 552 | 9.906660 | TCATTTGTACTACATTCCATGAAAAAC | 57.093 | 29.630 | 0.00 | 0.00 | 0.00 | 2.43 |
871 | 926 | 1.073897 | GGGTGCTGTGCTCTCCTTT | 59.926 | 57.895 | 0.00 | 0.00 | 0.00 | 3.11 |
882 | 937 | 2.047844 | CTGTCTCGGTGGGTGCTG | 60.048 | 66.667 | 0.00 | 0.00 | 0.00 | 4.41 |
1068 | 1123 | 2.746277 | GCTTCGGGATGTTGCGGT | 60.746 | 61.111 | 0.00 | 0.00 | 0.00 | 5.68 |
1073 | 1128 | 2.813908 | GCGACGCTTCGGGATGTT | 60.814 | 61.111 | 13.73 | 0.00 | 45.98 | 2.71 |
1074 | 1129 | 4.814294 | GGCGACGCTTCGGGATGT | 62.814 | 66.667 | 20.77 | 0.00 | 45.98 | 3.06 |
1275 | 1330 | 3.872728 | TCGTCAGCGATCCGTCCG | 61.873 | 66.667 | 0.00 | 0.00 | 42.81 | 4.79 |
1480 | 1540 | 5.503634 | TCAGAAATGTGGAGGAAATCTGA | 57.496 | 39.130 | 0.00 | 0.00 | 39.42 | 3.27 |
1489 | 1549 | 3.711086 | ACGATCGATCAGAAATGTGGAG | 58.289 | 45.455 | 24.34 | 6.60 | 0.00 | 3.86 |
1490 | 1550 | 3.801114 | ACGATCGATCAGAAATGTGGA | 57.199 | 42.857 | 24.34 | 0.00 | 0.00 | 4.02 |
1492 | 1552 | 5.454736 | TGAAACGATCGATCAGAAATGTG | 57.545 | 39.130 | 24.34 | 8.47 | 0.00 | 3.21 |
1493 | 1553 | 5.163854 | GGTTGAAACGATCGATCAGAAATGT | 60.164 | 40.000 | 24.34 | 10.49 | 0.00 | 2.71 |
1541 | 1603 | 5.730568 | GCGCAAGAAAGTTCAGAAGAAGAAA | 60.731 | 40.000 | 0.30 | 0.00 | 43.02 | 2.52 |
1584 | 1646 | 0.108709 | ATGCAATGCGCCAAACGAAT | 60.109 | 45.000 | 4.18 | 0.00 | 44.05 | 3.34 |
1608 | 1670 | 1.213678 | TCTGAGCATTTGATCCAGGGG | 59.786 | 52.381 | 0.00 | 0.00 | 0.00 | 4.79 |
1922 | 1987 | 3.066064 | TCCAAATCACGAACAAACCACAG | 59.934 | 43.478 | 0.00 | 0.00 | 0.00 | 3.66 |
2180 | 2245 | 1.212935 | GTACAAGGGCTCCATGTCCAT | 59.787 | 52.381 | 5.53 | 0.00 | 44.59 | 3.41 |
2291 | 2356 | 1.687123 | GGGACTAGCGGCTAAAGATCA | 59.313 | 52.381 | 11.39 | 0.00 | 0.00 | 2.92 |
2294 | 2359 | 1.112113 | CAGGGACTAGCGGCTAAAGA | 58.888 | 55.000 | 11.39 | 0.00 | 36.02 | 2.52 |
2295 | 2360 | 0.824759 | ACAGGGACTAGCGGCTAAAG | 59.175 | 55.000 | 11.39 | 4.65 | 36.02 | 1.85 |
2310 | 2375 | 4.250464 | TGCCGTGAAAGTAATAAGACAGG | 58.750 | 43.478 | 0.00 | 0.00 | 0.00 | 4.00 |
2328 | 2393 | 1.066143 | ACTATTGGACCACTTCTGCCG | 60.066 | 52.381 | 0.00 | 0.00 | 0.00 | 5.69 |
2331 | 2396 | 4.271696 | TGTCACTATTGGACCACTTCTG | 57.728 | 45.455 | 0.00 | 0.00 | 34.36 | 3.02 |
2543 | 2611 | 1.002502 | AAAAGACCCGGTGCTAGCC | 60.003 | 57.895 | 13.29 | 3.27 | 0.00 | 3.93 |
2701 | 2769 | 1.026718 | AGCAAACGACCTATGCAGCC | 61.027 | 55.000 | 0.00 | 0.00 | 42.45 | 4.85 |
2879 | 2957 | 6.892310 | AAAAGCAGACACAAGAAAAATGAC | 57.108 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
2883 | 2961 | 5.637387 | GGACAAAAAGCAGACACAAGAAAAA | 59.363 | 36.000 | 0.00 | 0.00 | 0.00 | 1.94 |
2954 | 3032 | 8.961634 | TGGAATCTATCGAACTAATAGATGAGG | 58.038 | 37.037 | 6.32 | 0.00 | 42.77 | 3.86 |
3000 | 3078 | 1.197721 | CGCTACTTGTCAAGGCCAAAG | 59.802 | 52.381 | 16.85 | 2.99 | 0.00 | 2.77 |
3025 | 3103 | 6.052360 | GGAAATGAAGAGAACCTCCTGATAC | 58.948 | 44.000 | 0.00 | 0.00 | 0.00 | 2.24 |
3122 | 3200 | 1.170290 | TGTCGTCGGACTTGCTCTCA | 61.170 | 55.000 | 6.57 | 0.00 | 43.79 | 3.27 |
3194 | 3272 | 1.126846 | CAAGCGACACGGTCATCTTTC | 59.873 | 52.381 | 0.00 | 0.00 | 36.27 | 2.62 |
3272 | 3350 | 7.744087 | AACATCACTCTGCACAAAAGTTATA | 57.256 | 32.000 | 0.00 | 0.00 | 0.00 | 0.98 |
3294 | 3372 | 2.799562 | GCCTTGCAGTGGAAACTGAAAC | 60.800 | 50.000 | 9.97 | 0.00 | 39.99 | 2.78 |
3487 | 3579 | 2.224018 | TGCATGGCCTCAAAAGAAACAC | 60.224 | 45.455 | 3.32 | 0.00 | 0.00 | 3.32 |
3631 | 3740 | 9.084533 | TGCAAAGTTAAGTAAAAGGTTCCATAT | 57.915 | 29.630 | 0.00 | 0.00 | 0.00 | 1.78 |
3726 | 3835 | 4.650972 | TTACCTTCCTGCACAAATAGGT | 57.349 | 40.909 | 0.00 | 0.00 | 39.25 | 3.08 |
3814 | 3923 | 9.383519 | AGTATGTGTTAAGAAATCATACCACTG | 57.616 | 33.333 | 0.00 | 0.00 | 40.60 | 3.66 |
3832 | 3941 | 8.668353 | CAGTGCAGTAATTTGATTAGTATGTGT | 58.332 | 33.333 | 0.00 | 0.00 | 0.00 | 3.72 |
3833 | 3942 | 8.668353 | ACAGTGCAGTAATTTGATTAGTATGTG | 58.332 | 33.333 | 0.00 | 0.00 | 0.00 | 3.21 |
3834 | 3943 | 8.668353 | CACAGTGCAGTAATTTGATTAGTATGT | 58.332 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
3835 | 3944 | 8.668353 | ACACAGTGCAGTAATTTGATTAGTATG | 58.332 | 33.333 | 0.00 | 0.00 | 0.00 | 2.39 |
3836 | 3945 | 8.792830 | ACACAGTGCAGTAATTTGATTAGTAT | 57.207 | 30.769 | 0.00 | 0.00 | 0.00 | 2.12 |
3837 | 3946 | 8.615878 | AACACAGTGCAGTAATTTGATTAGTA | 57.384 | 30.769 | 0.00 | 0.00 | 0.00 | 1.82 |
3838 | 3947 | 7.510549 | AACACAGTGCAGTAATTTGATTAGT | 57.489 | 32.000 | 0.00 | 0.00 | 0.00 | 2.24 |
3839 | 3948 | 7.693951 | GCTAACACAGTGCAGTAATTTGATTAG | 59.306 | 37.037 | 0.00 | 0.00 | 0.00 | 1.73 |
3840 | 3949 | 7.390440 | AGCTAACACAGTGCAGTAATTTGATTA | 59.610 | 33.333 | 0.00 | 0.00 | 0.00 | 1.75 |
3841 | 3950 | 6.207417 | AGCTAACACAGTGCAGTAATTTGATT | 59.793 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
3961 | 4754 | 2.659428 | AGGAAATAAGGCAGCACATCC | 58.341 | 47.619 | 0.00 | 0.00 | 0.00 | 3.51 |
3962 | 4755 | 5.590259 | TCTTTAGGAAATAAGGCAGCACATC | 59.410 | 40.000 | 0.00 | 0.00 | 0.00 | 3.06 |
4017 | 4810 | 3.825143 | AAAACTTGCAGCAGTTTCCAT | 57.175 | 38.095 | 15.14 | 0.06 | 44.62 | 3.41 |
4049 | 4842 | 4.451900 | AGTGTAGTAAACTTGCAACAGCT | 58.548 | 39.130 | 0.00 | 0.00 | 0.00 | 4.24 |
4074 | 4867 | 1.736126 | CAGGCATGCTGATTATAGGCG | 59.264 | 52.381 | 18.92 | 0.00 | 0.00 | 5.52 |
4159 | 4952 | 7.391275 | TCAAATTCATCAGATTCTGTTGTGCTA | 59.609 | 33.333 | 19.33 | 8.42 | 34.12 | 3.49 |
4254 | 5047 | 6.936335 | TGTTGAAGATCTGCTGTTTGATTCTA | 59.064 | 34.615 | 1.43 | 0.00 | 0.00 | 2.10 |
4657 | 5450 | 3.128349 | TGTTACTGCTCCGAAAACACTC | 58.872 | 45.455 | 0.00 | 0.00 | 0.00 | 3.51 |
4693 | 5486 | 3.244033 | TGTGGCCACAAACAAGAAAAG | 57.756 | 42.857 | 36.10 | 0.00 | 38.56 | 2.27 |
4727 | 5520 | 7.089538 | TCAACGTTAACACTATTCCGTAATCA | 58.910 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
4777 | 5570 | 4.073293 | ACTAGATAAACTGCCCCATTCG | 57.927 | 45.455 | 0.00 | 0.00 | 0.00 | 3.34 |
4852 | 5645 | 7.314393 | GCTCTTATATTAGTTTACGGAGGGAG | 58.686 | 42.308 | 0.00 | 0.00 | 0.00 | 4.30 |
4853 | 5646 | 6.072286 | CGCTCTTATATTAGTTTACGGAGGGA | 60.072 | 42.308 | 0.00 | 0.00 | 34.63 | 4.20 |
4854 | 5647 | 6.091437 | CGCTCTTATATTAGTTTACGGAGGG | 58.909 | 44.000 | 0.00 | 0.00 | 0.00 | 4.30 |
4855 | 5648 | 6.675987 | ACGCTCTTATATTAGTTTACGGAGG | 58.324 | 40.000 | 0.00 | 0.00 | 0.00 | 4.30 |
4856 | 5649 | 8.571461 | AAACGCTCTTATATTAGTTTACGGAG | 57.429 | 34.615 | 0.00 | 0.00 | 31.14 | 4.63 |
4857 | 5650 | 9.669353 | CTAAACGCTCTTATATTAGTTTACGGA | 57.331 | 33.333 | 0.00 | 0.00 | 34.29 | 4.69 |
4858 | 5651 | 9.669353 | TCTAAACGCTCTTATATTAGTTTACGG | 57.331 | 33.333 | 0.00 | 0.00 | 34.29 | 4.02 |
4870 | 5663 | 9.953697 | CTACTTTAGTGATCTAAACGCTCTTAT | 57.046 | 33.333 | 0.00 | 0.00 | 40.05 | 1.73 |
4871 | 5664 | 8.954350 | ACTACTTTAGTGATCTAAACGCTCTTA | 58.046 | 33.333 | 0.00 | 0.00 | 40.05 | 2.10 |
4872 | 5665 | 7.828712 | ACTACTTTAGTGATCTAAACGCTCTT | 58.171 | 34.615 | 0.00 | 0.00 | 40.05 | 2.85 |
4873 | 5666 | 7.393841 | ACTACTTTAGTGATCTAAACGCTCT | 57.606 | 36.000 | 0.00 | 0.00 | 40.05 | 4.09 |
4905 | 5698 | 9.710818 | TCCCTCTGTAAACTAATATAAGAGTGT | 57.289 | 33.333 | 0.00 | 0.00 | 0.00 | 3.55 |
4907 | 5700 | 9.939424 | ACTCCCTCTGTAAACTAATATAAGAGT | 57.061 | 33.333 | 0.00 | 0.00 | 0.00 | 3.24 |
4915 | 5708 | 9.102453 | AGAAAACTACTCCCTCTGTAAACTAAT | 57.898 | 33.333 | 0.00 | 0.00 | 0.00 | 1.73 |
4916 | 5709 | 8.488308 | AGAAAACTACTCCCTCTGTAAACTAA | 57.512 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
4917 | 5710 | 8.488308 | AAGAAAACTACTCCCTCTGTAAACTA | 57.512 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
4918 | 5711 | 6.997942 | AGAAAACTACTCCCTCTGTAAACT | 57.002 | 37.500 | 0.00 | 0.00 | 0.00 | 2.66 |
4919 | 5712 | 7.385478 | CAGAAGAAAACTACTCCCTCTGTAAAC | 59.615 | 40.741 | 0.00 | 0.00 | 0.00 | 2.01 |
4920 | 5713 | 7.289317 | TCAGAAGAAAACTACTCCCTCTGTAAA | 59.711 | 37.037 | 0.00 | 0.00 | 0.00 | 2.01 |
4921 | 5714 | 6.781014 | TCAGAAGAAAACTACTCCCTCTGTAA | 59.219 | 38.462 | 0.00 | 0.00 | 0.00 | 2.41 |
4922 | 5715 | 6.312529 | TCAGAAGAAAACTACTCCCTCTGTA | 58.687 | 40.000 | 0.00 | 0.00 | 0.00 | 2.74 |
4923 | 5716 | 5.148502 | TCAGAAGAAAACTACTCCCTCTGT | 58.851 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
4924 | 5717 | 5.730296 | TCAGAAGAAAACTACTCCCTCTG | 57.270 | 43.478 | 0.00 | 0.00 | 0.00 | 3.35 |
4925 | 5718 | 6.943899 | AATCAGAAGAAAACTACTCCCTCT | 57.056 | 37.500 | 0.00 | 0.00 | 0.00 | 3.69 |
4926 | 5719 | 7.162082 | TCAAATCAGAAGAAAACTACTCCCTC | 58.838 | 38.462 | 0.00 | 0.00 | 0.00 | 4.30 |
4927 | 5720 | 7.079451 | TCAAATCAGAAGAAAACTACTCCCT | 57.921 | 36.000 | 0.00 | 0.00 | 0.00 | 4.20 |
4928 | 5721 | 7.745620 | TTCAAATCAGAAGAAAACTACTCCC | 57.254 | 36.000 | 0.00 | 0.00 | 0.00 | 4.30 |
5309 | 6110 | 5.640147 | AGATACCAATGTTCAGTTCCCAAA | 58.360 | 37.500 | 0.00 | 0.00 | 0.00 | 3.28 |
5861 | 6663 | 4.383118 | GCTCAGAGGAATACAAGGTGCTAA | 60.383 | 45.833 | 0.00 | 0.00 | 0.00 | 3.09 |
5974 | 6776 | 9.772973 | ATGAAAACTACGCATTAACTATCCATA | 57.227 | 29.630 | 0.00 | 0.00 | 0.00 | 2.74 |
6064 | 6866 | 2.791383 | TGCATTGAAAGTTTGGACGG | 57.209 | 45.000 | 0.00 | 0.00 | 0.00 | 4.79 |
6189 | 6991 | 0.811281 | GCACCCCATTACAAGCTGTC | 59.189 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
6191 | 6993 | 1.549203 | AAGCACCCCATTACAAGCTG | 58.451 | 50.000 | 0.00 | 0.00 | 31.88 | 4.24 |
6192 | 6994 | 2.041081 | TGTAAGCACCCCATTACAAGCT | 59.959 | 45.455 | 0.00 | 0.00 | 38.57 | 3.74 |
6225 | 7027 | 4.023193 | GCATGGCTGTAATGTGTAATACCC | 60.023 | 45.833 | 0.00 | 0.00 | 0.00 | 3.69 |
6285 | 7093 | 9.033481 | ACAGTTACACATTCACAAATTCAAATG | 57.967 | 29.630 | 0.00 | 0.00 | 35.68 | 2.32 |
6324 | 7132 | 3.129287 | GGTGTATGCAAGGAATGAACAGG | 59.871 | 47.826 | 0.00 | 0.00 | 0.00 | 4.00 |
6439 | 7247 | 9.231297 | TCTTGACCTTGGAAGTATCTAAATTTG | 57.769 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
6440 | 7248 | 9.454859 | CTCTTGACCTTGGAAGTATCTAAATTT | 57.545 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
6512 | 7320 | 0.609406 | GAGTTGGGTTGGGAGAAGGC | 60.609 | 60.000 | 0.00 | 0.00 | 0.00 | 4.35 |
6595 | 7403 | 2.927477 | ACGCACATAGATTACAACCACG | 59.073 | 45.455 | 0.00 | 0.00 | 0.00 | 4.94 |
6761 | 7569 | 3.741388 | CGTTCCAACCTCAACTTCTCTGT | 60.741 | 47.826 | 0.00 | 0.00 | 0.00 | 3.41 |
6816 | 7624 | 0.038801 | TCTCAGACAGACAGCAAGCG | 60.039 | 55.000 | 0.00 | 0.00 | 0.00 | 4.68 |
6847 | 7655 | 5.050490 | CGTGGCAAGTGATTTATACTAGCT | 58.950 | 41.667 | 0.00 | 0.00 | 0.00 | 3.32 |
6893 | 7806 | 5.173492 | GTCTTGAAGTTTAGTCGACTGTGAC | 59.827 | 44.000 | 28.12 | 20.79 | 39.21 | 3.67 |
6902 | 7815 | 6.262273 | TCCAACCATTGTCTTGAAGTTTAGTC | 59.738 | 38.462 | 0.00 | 0.00 | 0.00 | 2.59 |
6941 | 7854 | 3.443925 | TCCTCTGCGTCCTGCTCG | 61.444 | 66.667 | 0.00 | 0.00 | 46.63 | 5.03 |
6953 | 7866 | 1.734655 | AATGATATGCCCCGTCCTCT | 58.265 | 50.000 | 0.00 | 0.00 | 0.00 | 3.69 |
6963 | 7876 | 6.017109 | CAGTACCCACCTTTGTAATGATATGC | 60.017 | 42.308 | 0.00 | 0.00 | 35.63 | 3.14 |
7002 | 7915 | 2.722201 | ATCCGTCCCAGCGTCCTTC | 61.722 | 63.158 | 0.00 | 0.00 | 0.00 | 3.46 |
7028 | 7941 | 5.221185 | CGTTTCTGAGAACTCCCCGAATATA | 60.221 | 44.000 | 0.00 | 0.00 | 0.00 | 0.86 |
7060 | 7973 | 1.270274 | CAAGTGTTGCTGCAATGCCTA | 59.730 | 47.619 | 19.11 | 0.62 | 0.00 | 3.93 |
7113 | 8026 | 3.121030 | GCAATGCTGCTCCGACGT | 61.121 | 61.111 | 0.00 | 0.00 | 45.74 | 4.34 |
7216 | 8129 | 1.243342 | CCATTCAAGACGGCAAGGCA | 61.243 | 55.000 | 0.00 | 0.00 | 0.00 | 4.75 |
7292 | 8205 | 2.163818 | ACGAACGAAAGAATGGCTGA | 57.836 | 45.000 | 0.14 | 0.00 | 0.00 | 4.26 |
7633 | 8549 | 3.366052 | TCCTATGAACCAAAAGAGGCC | 57.634 | 47.619 | 0.00 | 0.00 | 0.00 | 5.19 |
7634 | 8550 | 5.066593 | CCTATCCTATGAACCAAAAGAGGC | 58.933 | 45.833 | 0.00 | 0.00 | 0.00 | 4.70 |
7635 | 8551 | 6.500589 | TCCTATCCTATGAACCAAAAGAGG | 57.499 | 41.667 | 0.00 | 0.00 | 0.00 | 3.69 |
7642 | 8558 | 9.439461 | CCTATGATAATCCTATCCTATGAACCA | 57.561 | 37.037 | 0.00 | 0.00 | 34.10 | 3.67 |
7643 | 8559 | 9.661954 | TCCTATGATAATCCTATCCTATGAACC | 57.338 | 37.037 | 0.00 | 0.00 | 34.10 | 3.62 |
7661 | 8577 | 9.621239 | TTCCTACAAGATTCCTATTCCTATGAT | 57.379 | 33.333 | 0.00 | 0.00 | 0.00 | 2.45 |
7662 | 8578 | 9.447279 | TTTCCTACAAGATTCCTATTCCTATGA | 57.553 | 33.333 | 0.00 | 0.00 | 0.00 | 2.15 |
7665 | 8581 | 9.447279 | TCATTTCCTACAAGATTCCTATTCCTA | 57.553 | 33.333 | 0.00 | 0.00 | 0.00 | 2.94 |
7666 | 8582 | 8.337118 | TCATTTCCTACAAGATTCCTATTCCT | 57.663 | 34.615 | 0.00 | 0.00 | 0.00 | 3.36 |
7667 | 8583 | 8.980481 | TTCATTTCCTACAAGATTCCTATTCC | 57.020 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
7671 | 8587 | 9.396022 | GTCATTTCATTTCCTACAAGATTCCTA | 57.604 | 33.333 | 0.00 | 0.00 | 0.00 | 2.94 |
7672 | 8588 | 7.890127 | TGTCATTTCATTTCCTACAAGATTCCT | 59.110 | 33.333 | 0.00 | 0.00 | 0.00 | 3.36 |
7673 | 8589 | 8.055279 | TGTCATTTCATTTCCTACAAGATTCC | 57.945 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
7674 | 8590 | 9.512435 | CATGTCATTTCATTTCCTACAAGATTC | 57.488 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
7675 | 8591 | 9.028284 | ACATGTCATTTCATTTCCTACAAGATT | 57.972 | 29.630 | 0.00 | 0.00 | 0.00 | 2.40 |
7676 | 8592 | 8.585471 | ACATGTCATTTCATTTCCTACAAGAT | 57.415 | 30.769 | 0.00 | 0.00 | 0.00 | 2.40 |
7677 | 8593 | 9.685276 | ATACATGTCATTTCATTTCCTACAAGA | 57.315 | 29.630 | 0.00 | 0.00 | 0.00 | 3.02 |
7678 | 8594 | 9.941664 | GATACATGTCATTTCATTTCCTACAAG | 57.058 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
7679 | 8595 | 9.685276 | AGATACATGTCATTTCATTTCCTACAA | 57.315 | 29.630 | 0.00 | 0.00 | 0.00 | 2.41 |
7680 | 8596 | 9.330063 | GAGATACATGTCATTTCATTTCCTACA | 57.670 | 33.333 | 0.00 | 0.00 | 0.00 | 2.74 |
7681 | 8597 | 9.330063 | TGAGATACATGTCATTTCATTTCCTAC | 57.670 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
7682 | 8598 | 9.904198 | TTGAGATACATGTCATTTCATTTCCTA | 57.096 | 29.630 | 0.00 | 0.00 | 29.66 | 2.94 |
7683 | 8599 | 8.812513 | TTGAGATACATGTCATTTCATTTCCT | 57.187 | 30.769 | 0.00 | 0.00 | 29.66 | 3.36 |
7687 | 8603 | 9.417561 | AGGATTTGAGATACATGTCATTTCATT | 57.582 | 29.630 | 0.00 | 0.00 | 29.66 | 2.57 |
7688 | 8604 | 8.991783 | AGGATTTGAGATACATGTCATTTCAT | 57.008 | 30.769 | 0.00 | 0.00 | 29.66 | 2.57 |
7692 | 8608 | 9.722184 | CTCATAGGATTTGAGATACATGTCATT | 57.278 | 33.333 | 0.00 | 0.00 | 42.63 | 2.57 |
7693 | 8609 | 8.878211 | ACTCATAGGATTTGAGATACATGTCAT | 58.122 | 33.333 | 0.00 | 0.00 | 42.63 | 3.06 |
7694 | 8610 | 8.255111 | ACTCATAGGATTTGAGATACATGTCA | 57.745 | 34.615 | 0.00 | 0.00 | 42.63 | 3.58 |
7695 | 8611 | 9.853555 | CTACTCATAGGATTTGAGATACATGTC | 57.146 | 37.037 | 0.00 | 0.00 | 42.63 | 3.06 |
7712 | 8628 | 9.703892 | CATCTTGTTTCCTATTCCTACTCATAG | 57.296 | 37.037 | 0.00 | 0.00 | 0.00 | 2.23 |
7713 | 8629 | 9.213777 | ACATCTTGTTTCCTATTCCTACTCATA | 57.786 | 33.333 | 0.00 | 0.00 | 0.00 | 2.15 |
7714 | 8630 | 8.095452 | ACATCTTGTTTCCTATTCCTACTCAT | 57.905 | 34.615 | 0.00 | 0.00 | 0.00 | 2.90 |
7715 | 8631 | 7.180229 | TGACATCTTGTTTCCTATTCCTACTCA | 59.820 | 37.037 | 0.00 | 0.00 | 0.00 | 3.41 |
7716 | 8632 | 7.556844 | TGACATCTTGTTTCCTATTCCTACTC | 58.443 | 38.462 | 0.00 | 0.00 | 0.00 | 2.59 |
7717 | 8633 | 7.496346 | TGACATCTTGTTTCCTATTCCTACT | 57.504 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
7718 | 8634 | 8.738645 | AATGACATCTTGTTTCCTATTCCTAC | 57.261 | 34.615 | 0.00 | 0.00 | 0.00 | 3.18 |
7719 | 8635 | 9.177608 | CAAATGACATCTTGTTTCCTATTCCTA | 57.822 | 33.333 | 0.00 | 0.00 | 0.00 | 2.94 |
7720 | 8636 | 7.890127 | TCAAATGACATCTTGTTTCCTATTCCT | 59.110 | 33.333 | 0.00 | 0.00 | 0.00 | 3.36 |
7721 | 8637 | 8.055279 | TCAAATGACATCTTGTTTCCTATTCC | 57.945 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
7723 | 8639 | 9.865321 | CAATCAAATGACATCTTGTTTCCTATT | 57.135 | 29.630 | 0.00 | 0.00 | 0.00 | 1.73 |
7724 | 8640 | 9.246670 | TCAATCAAATGACATCTTGTTTCCTAT | 57.753 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
7725 | 8641 | 8.634335 | TCAATCAAATGACATCTTGTTTCCTA | 57.366 | 30.769 | 0.00 | 0.00 | 0.00 | 2.94 |
7726 | 8642 | 7.528996 | TCAATCAAATGACATCTTGTTTCCT | 57.471 | 32.000 | 0.00 | 0.00 | 0.00 | 3.36 |
7739 | 8655 | 6.669125 | AATCCTTTGGTGTCAATCAAATGA | 57.331 | 33.333 | 8.94 | 8.94 | 34.09 | 2.57 |
7740 | 8656 | 7.733402 | AAAATCCTTTGGTGTCAATCAAATG | 57.267 | 32.000 | 3.89 | 2.57 | 33.19 | 2.32 |
7795 | 8711 | 6.258068 | GGTTCCTATCCTTCACATTTCGTAAG | 59.742 | 42.308 | 0.00 | 0.00 | 0.00 | 2.34 |
7796 | 8712 | 6.110707 | GGTTCCTATCCTTCACATTTCGTAA | 58.889 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
7797 | 8713 | 5.188163 | TGGTTCCTATCCTTCACATTTCGTA | 59.812 | 40.000 | 0.00 | 0.00 | 0.00 | 3.43 |
7798 | 8714 | 4.019681 | TGGTTCCTATCCTTCACATTTCGT | 60.020 | 41.667 | 0.00 | 0.00 | 0.00 | 3.85 |
7799 | 8715 | 4.513442 | TGGTTCCTATCCTTCACATTTCG | 58.487 | 43.478 | 0.00 | 0.00 | 0.00 | 3.46 |
7800 | 8716 | 6.039829 | GGATTGGTTCCTATCCTTCACATTTC | 59.960 | 42.308 | 19.71 | 0.00 | 41.78 | 2.17 |
7801 | 8717 | 5.893824 | GGATTGGTTCCTATCCTTCACATTT | 59.106 | 40.000 | 19.71 | 0.00 | 41.78 | 2.32 |
7802 | 8718 | 5.449553 | GGATTGGTTCCTATCCTTCACATT | 58.550 | 41.667 | 19.71 | 0.00 | 41.78 | 2.71 |
7803 | 8719 | 5.053978 | GGATTGGTTCCTATCCTTCACAT | 57.946 | 43.478 | 19.71 | 0.00 | 41.78 | 3.21 |
7804 | 8720 | 4.503714 | GGATTGGTTCCTATCCTTCACA | 57.496 | 45.455 | 19.71 | 0.00 | 41.78 | 3.58 |
7815 | 8731 | 7.974504 | TCCTATTCTTACATAGGATTGGTTCC | 58.025 | 38.462 | 5.49 | 0.00 | 46.83 | 3.62 |
7839 | 8755 | 6.207614 | GCCCTTTGGTTCATAGGAATAGATTC | 59.792 | 42.308 | 6.07 | 0.00 | 35.14 | 2.52 |
7840 | 8756 | 6.071320 | GCCCTTTGGTTCATAGGAATAGATT | 58.929 | 40.000 | 6.07 | 0.00 | 35.14 | 2.40 |
7841 | 8757 | 5.373854 | AGCCCTTTGGTTCATAGGAATAGAT | 59.626 | 40.000 | 6.07 | 0.00 | 35.14 | 1.98 |
7842 | 8758 | 4.726825 | AGCCCTTTGGTTCATAGGAATAGA | 59.273 | 41.667 | 6.07 | 0.00 | 35.14 | 1.98 |
7843 | 8759 | 5.053978 | AGCCCTTTGGTTCATAGGAATAG | 57.946 | 43.478 | 6.07 | 0.00 | 35.14 | 1.73 |
7844 | 8760 | 4.726825 | AGAGCCCTTTGGTTCATAGGAATA | 59.273 | 41.667 | 6.07 | 0.00 | 43.89 | 1.75 |
7845 | 8761 | 3.529319 | AGAGCCCTTTGGTTCATAGGAAT | 59.471 | 43.478 | 6.07 | 0.00 | 43.89 | 3.01 |
7846 | 8762 | 2.919602 | AGAGCCCTTTGGTTCATAGGAA | 59.080 | 45.455 | 6.07 | 0.00 | 43.89 | 3.36 |
7847 | 8763 | 2.562296 | AGAGCCCTTTGGTTCATAGGA | 58.438 | 47.619 | 6.07 | 0.00 | 43.89 | 2.94 |
7848 | 8764 | 4.503714 | TTAGAGCCCTTTGGTTCATAGG | 57.496 | 45.455 | 0.00 | 0.00 | 43.89 | 2.57 |
7849 | 8765 | 4.884164 | CCTTTAGAGCCCTTTGGTTCATAG | 59.116 | 45.833 | 0.00 | 0.00 | 43.89 | 2.23 |
7850 | 8766 | 4.538490 | TCCTTTAGAGCCCTTTGGTTCATA | 59.462 | 41.667 | 0.00 | 0.00 | 43.89 | 2.15 |
7851 | 8767 | 3.333680 | TCCTTTAGAGCCCTTTGGTTCAT | 59.666 | 43.478 | 0.00 | 0.00 | 43.89 | 2.57 |
7852 | 8768 | 2.714250 | TCCTTTAGAGCCCTTTGGTTCA | 59.286 | 45.455 | 0.00 | 0.00 | 43.89 | 3.18 |
7853 | 8769 | 3.434940 | TCCTTTAGAGCCCTTTGGTTC | 57.565 | 47.619 | 0.00 | 0.00 | 41.91 | 3.62 |
7854 | 8770 | 3.895704 | TTCCTTTAGAGCCCTTTGGTT | 57.104 | 42.857 | 0.00 | 0.00 | 0.00 | 3.67 |
7855 | 8771 | 3.895704 | TTTCCTTTAGAGCCCTTTGGT | 57.104 | 42.857 | 0.00 | 0.00 | 0.00 | 3.67 |
7856 | 8772 | 5.745312 | AATTTTCCTTTAGAGCCCTTTGG | 57.255 | 39.130 | 0.00 | 0.00 | 0.00 | 3.28 |
7966 | 8882 | 1.673920 | GCCACGACACTCTTTTTGGAA | 59.326 | 47.619 | 0.00 | 0.00 | 0.00 | 3.53 |
7975 | 8891 | 2.750948 | TGAACTAAAGCCACGACACTC | 58.249 | 47.619 | 0.00 | 0.00 | 0.00 | 3.51 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.