Multiple sequence alignment - TraesCS7A01G301500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G301500 chr7A 100.000 5922 0 0 1 5922 420663845 420669766 0.000000e+00 10936.0
1 TraesCS7A01G301500 chr7A 92.157 51 3 1 3650 3699 420667443 420667493 2.960000e-08 71.3
2 TraesCS7A01G301500 chr7A 92.157 51 3 1 3599 3649 420667494 420667543 2.960000e-08 71.3
3 TraesCS7A01G301500 chr7D 94.489 5716 195 49 234 5901 374428716 374434359 0.000000e+00 8700.0
4 TraesCS7A01G301500 chr7D 94.118 51 2 1 3650 3699 374432074 374432124 6.360000e-10 76.8
5 TraesCS7A01G301500 chr7B 95.740 3216 97 19 461 3649 369105581 369108783 0.000000e+00 5144.0
6 TraesCS7A01G301500 chr7B 95.317 2221 68 14 3650 5852 369108735 369110937 0.000000e+00 3493.0
7 TraesCS7A01G301500 chr7B 92.265 181 13 1 12 191 741344586 741344406 7.620000e-64 255.0
8 TraesCS7A01G301500 chr7B 96.875 64 2 0 5838 5901 369110957 369111020 2.260000e-19 108.0
9 TraesCS7A01G301500 chr2B 92.655 177 12 1 16 191 551450315 551450139 2.740000e-63 254.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G301500 chr7A 420663845 420669766 5921 False 3692.866667 10936 94.771333 1 5922 3 chr7A.!!$F1 5921
1 TraesCS7A01G301500 chr7D 374428716 374434359 5643 False 4388.400000 8700 94.303500 234 5901 2 chr7D.!!$F1 5667
2 TraesCS7A01G301500 chr7B 369105581 369111020 5439 False 2915.000000 5144 95.977333 461 5901 3 chr7B.!!$F1 5440

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
111 112 0.032130 CATCATGCATGGCCTCTTGC 59.968 55.000 25.97 16.07 42.34 4.01 F
112 113 0.106167 ATCATGCATGGCCTCTTGCT 60.106 50.000 25.97 8.81 42.44 3.91 F
195 196 0.109412 GTCATCGACGAAACGGTCCT 60.109 55.000 0.00 0.00 33.30 3.85 F
1207 1213 0.038159 CCTTGCCTATCGGATCCGTC 60.038 60.000 32.15 17.34 40.74 4.79 F
2211 2218 1.449070 CAGCTGAGAATGGCGCAGA 60.449 57.895 8.42 0.00 46.01 4.26 F
3054 3073 1.667722 CTTTTGTGCCCCCTTCAGC 59.332 57.895 0.00 0.00 0.00 4.26 F
4037 4073 0.478507 AAGGTGACTCAAGGGGTTGG 59.521 55.000 0.00 0.00 42.68 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1180 1186 2.620251 CGATAGGCAAGGACCAATGA 57.380 50.000 0.00 0.00 0.00 2.57 R
1207 1213 4.514441 AGACAAAGCAAACTGATCAGACAG 59.486 41.667 29.27 17.16 42.78 3.51 R
1498 1504 4.549458 ACATTTCATTTCAAGCAACTCCG 58.451 39.130 0.00 0.00 0.00 4.63 R
3054 3073 0.840722 ACAGGGAAGGGTGGTACTGG 60.841 60.000 0.00 0.00 0.00 4.00 R
3310 3338 1.059913 AATCAGGAATCCTAGGGGCG 58.940 55.000 9.46 0.00 29.64 6.13 R
4870 4912 0.322098 TGCCCAGAATACCAACCACG 60.322 55.000 0.00 0.00 0.00 4.94 R
5599 5645 0.036105 CCATCAGTGCTGCCAGTACA 60.036 55.000 15.44 0.00 32.98 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.024414 CGTCCAAAATCCCAGAATCCC 58.976 52.381 0.00 0.00 0.00 3.85
21 22 2.620367 CGTCCAAAATCCCAGAATCCCA 60.620 50.000 0.00 0.00 0.00 4.37
22 23 3.026694 GTCCAAAATCCCAGAATCCCAG 58.973 50.000 0.00 0.00 0.00 4.45
23 24 2.925653 TCCAAAATCCCAGAATCCCAGA 59.074 45.455 0.00 0.00 0.00 3.86
24 25 3.533068 TCCAAAATCCCAGAATCCCAGAT 59.467 43.478 0.00 0.00 0.00 2.90
25 26 4.016292 TCCAAAATCCCAGAATCCCAGATT 60.016 41.667 0.00 0.00 0.00 2.40
26 27 4.100498 CCAAAATCCCAGAATCCCAGATTG 59.900 45.833 0.00 0.00 0.00 2.67
27 28 3.607490 AATCCCAGAATCCCAGATTGG 57.393 47.619 0.00 0.00 37.25 3.16
36 37 3.799753 CCAGATTGGGACGCTTCG 58.200 61.111 0.00 0.00 32.67 3.79
37 38 1.815421 CCAGATTGGGACGCTTCGG 60.815 63.158 0.00 0.00 32.67 4.30
38 39 2.125106 AGATTGGGACGCTTCGGC 60.125 61.111 0.00 0.00 37.65 5.54
39 40 2.435938 GATTGGGACGCTTCGGCA 60.436 61.111 0.00 0.00 41.88 5.69
40 41 2.436646 ATTGGGACGCTTCGGCAG 60.437 61.111 0.00 0.00 41.88 4.85
41 42 3.254024 ATTGGGACGCTTCGGCAGT 62.254 57.895 0.00 0.00 41.88 4.40
42 43 3.876589 TTGGGACGCTTCGGCAGTC 62.877 63.158 0.00 0.00 41.88 3.51
43 44 4.070552 GGGACGCTTCGGCAGTCT 62.071 66.667 0.00 0.00 41.00 3.24
44 45 2.507324 GGACGCTTCGGCAGTCTC 60.507 66.667 0.00 0.00 41.00 3.36
45 46 2.876645 GACGCTTCGGCAGTCTCG 60.877 66.667 0.00 0.00 41.88 4.04
49 50 2.876645 CTTCGGCAGTCTCGCGTC 60.877 66.667 5.77 0.00 0.00 5.19
50 51 4.753877 TTCGGCAGTCTCGCGTCG 62.754 66.667 5.77 0.00 0.00 5.12
54 55 4.104417 GCAGTCTCGCGTCGTCCT 62.104 66.667 5.77 0.00 0.00 3.85
55 56 2.747822 GCAGTCTCGCGTCGTCCTA 61.748 63.158 5.77 0.00 0.00 2.94
56 57 1.348938 CAGTCTCGCGTCGTCCTAG 59.651 63.158 5.77 0.00 0.00 3.02
57 58 2.023041 GTCTCGCGTCGTCCTAGC 59.977 66.667 5.77 0.00 0.00 3.42
58 59 2.435410 TCTCGCGTCGTCCTAGCA 60.435 61.111 5.77 0.00 0.00 3.49
59 60 2.036571 TCTCGCGTCGTCCTAGCAA 61.037 57.895 5.77 0.00 0.00 3.91
60 61 1.583967 CTCGCGTCGTCCTAGCAAG 60.584 63.158 5.77 0.00 0.00 4.01
61 62 2.178521 CGCGTCGTCCTAGCAAGT 59.821 61.111 0.00 0.00 0.00 3.16
62 63 2.152699 CGCGTCGTCCTAGCAAGTG 61.153 63.158 0.00 0.00 0.00 3.16
63 64 1.211969 GCGTCGTCCTAGCAAGTGA 59.788 57.895 0.00 0.00 0.00 3.41
64 65 0.388134 GCGTCGTCCTAGCAAGTGAA 60.388 55.000 0.00 0.00 0.00 3.18
65 66 1.736032 GCGTCGTCCTAGCAAGTGAAT 60.736 52.381 0.00 0.00 0.00 2.57
66 67 1.920574 CGTCGTCCTAGCAAGTGAATG 59.079 52.381 0.00 0.00 0.00 2.67
67 68 1.661112 GTCGTCCTAGCAAGTGAATGC 59.339 52.381 0.00 0.00 46.78 3.56
73 74 2.568090 GCAAGTGAATGCCGGTGG 59.432 61.111 1.90 0.00 40.49 4.61
85 86 2.511818 CCGGTGGCAGGTATACAGA 58.488 57.895 5.01 0.00 0.00 3.41
86 87 0.828022 CCGGTGGCAGGTATACAGAA 59.172 55.000 5.01 0.00 0.00 3.02
87 88 1.202533 CCGGTGGCAGGTATACAGAAG 60.203 57.143 5.01 0.00 0.00 2.85
88 89 1.754803 CGGTGGCAGGTATACAGAAGA 59.245 52.381 5.01 0.00 0.00 2.87
89 90 2.481449 CGGTGGCAGGTATACAGAAGAC 60.481 54.545 5.01 0.00 0.00 3.01
90 91 2.500098 GGTGGCAGGTATACAGAAGACA 59.500 50.000 5.01 0.00 0.00 3.41
91 92 3.522553 GTGGCAGGTATACAGAAGACAC 58.477 50.000 5.01 5.85 0.00 3.67
92 93 2.500098 TGGCAGGTATACAGAAGACACC 59.500 50.000 5.01 0.00 0.00 4.16
93 94 2.500098 GGCAGGTATACAGAAGACACCA 59.500 50.000 5.01 0.00 0.00 4.17
94 95 3.134804 GGCAGGTATACAGAAGACACCAT 59.865 47.826 5.01 0.00 0.00 3.55
95 96 4.372656 GCAGGTATACAGAAGACACCATC 58.627 47.826 5.01 0.00 0.00 3.51
96 97 4.141937 GCAGGTATACAGAAGACACCATCA 60.142 45.833 5.01 0.00 0.00 3.07
97 98 5.453903 GCAGGTATACAGAAGACACCATCAT 60.454 44.000 5.01 0.00 0.00 2.45
98 99 5.987953 CAGGTATACAGAAGACACCATCATG 59.012 44.000 5.01 0.00 0.00 3.07
99 100 4.752101 GGTATACAGAAGACACCATCATGC 59.248 45.833 5.01 0.00 0.00 4.06
100 101 2.865119 ACAGAAGACACCATCATGCA 57.135 45.000 0.00 0.00 0.00 3.96
101 102 3.361281 ACAGAAGACACCATCATGCAT 57.639 42.857 0.00 0.00 0.00 3.96
102 103 3.014623 ACAGAAGACACCATCATGCATG 58.985 45.455 21.07 21.07 0.00 4.06
108 109 4.923068 CCATCATGCATGGCCTCT 57.077 55.556 25.97 4.07 46.18 3.69
109 110 3.127099 CCATCATGCATGGCCTCTT 57.873 52.632 25.97 2.52 46.18 2.85
110 111 0.673985 CCATCATGCATGGCCTCTTG 59.326 55.000 25.97 13.35 46.18 3.02
111 112 0.032130 CATCATGCATGGCCTCTTGC 59.968 55.000 25.97 16.07 42.34 4.01
112 113 0.106167 ATCATGCATGGCCTCTTGCT 60.106 50.000 25.97 8.81 42.44 3.91
113 114 0.547553 TCATGCATGGCCTCTTGCTA 59.452 50.000 25.97 11.63 42.44 3.49
114 115 1.144298 TCATGCATGGCCTCTTGCTAT 59.856 47.619 25.97 12.93 42.70 2.97
117 118 4.916358 ATGGCCTCTTGCTATGGC 57.084 55.556 3.32 0.00 40.06 4.40
118 119 1.228063 ATGGCCTCTTGCTATGGCG 60.228 57.895 3.32 0.00 46.97 5.69
119 120 1.987807 ATGGCCTCTTGCTATGGCGT 61.988 55.000 3.32 0.00 46.97 5.68
120 121 1.889573 GGCCTCTTGCTATGGCGTC 60.890 63.158 0.00 0.00 46.97 5.19
121 122 1.889573 GCCTCTTGCTATGGCGTCC 60.890 63.158 0.00 0.00 42.25 4.79
122 123 1.826024 CCTCTTGCTATGGCGTCCT 59.174 57.895 0.00 0.00 42.25 3.85
123 124 0.179000 CCTCTTGCTATGGCGTCCTT 59.821 55.000 0.00 0.00 42.25 3.36
124 125 1.293924 CTCTTGCTATGGCGTCCTTG 58.706 55.000 0.00 0.00 42.25 3.61
125 126 0.613260 TCTTGCTATGGCGTCCTTGT 59.387 50.000 0.00 0.00 42.25 3.16
126 127 1.009829 CTTGCTATGGCGTCCTTGTC 58.990 55.000 0.00 0.00 42.25 3.18
127 128 0.323302 TTGCTATGGCGTCCTTGTCA 59.677 50.000 0.00 0.00 42.25 3.58
128 129 0.323302 TGCTATGGCGTCCTTGTCAA 59.677 50.000 0.00 0.00 42.25 3.18
129 130 1.065491 TGCTATGGCGTCCTTGTCAAT 60.065 47.619 0.00 0.00 42.25 2.57
130 131 2.169561 TGCTATGGCGTCCTTGTCAATA 59.830 45.455 0.00 0.00 42.25 1.90
131 132 2.802816 GCTATGGCGTCCTTGTCAATAG 59.197 50.000 0.00 0.00 0.00 1.73
132 133 1.668419 ATGGCGTCCTTGTCAATAGC 58.332 50.000 0.00 0.00 0.00 2.97
133 134 0.323302 TGGCGTCCTTGTCAATAGCA 59.677 50.000 0.00 0.00 0.00 3.49
134 135 0.727398 GGCGTCCTTGTCAATAGCAC 59.273 55.000 0.00 0.00 0.00 4.40
135 136 0.727398 GCGTCCTTGTCAATAGCACC 59.273 55.000 0.00 0.00 0.00 5.01
136 137 0.999406 CGTCCTTGTCAATAGCACCG 59.001 55.000 0.00 0.00 0.00 4.94
137 138 1.369625 GTCCTTGTCAATAGCACCGG 58.630 55.000 0.00 0.00 0.00 5.28
138 139 1.066430 GTCCTTGTCAATAGCACCGGA 60.066 52.381 9.46 0.00 0.00 5.14
139 140 1.066430 TCCTTGTCAATAGCACCGGAC 60.066 52.381 9.46 0.00 0.00 4.79
140 141 1.066143 CCTTGTCAATAGCACCGGACT 60.066 52.381 9.46 7.87 0.00 3.85
141 142 2.167693 CCTTGTCAATAGCACCGGACTA 59.832 50.000 9.46 10.22 0.00 2.59
142 143 3.448686 CTTGTCAATAGCACCGGACTAG 58.551 50.000 9.46 0.00 0.00 2.57
143 144 2.453521 TGTCAATAGCACCGGACTAGT 58.546 47.619 9.46 5.87 0.00 2.57
144 145 2.426024 TGTCAATAGCACCGGACTAGTC 59.574 50.000 14.87 14.87 0.00 2.59
145 146 1.674441 TCAATAGCACCGGACTAGTCG 59.326 52.381 16.56 11.49 0.00 4.18
146 147 0.384669 AATAGCACCGGACTAGTCGC 59.615 55.000 16.56 13.68 0.00 5.19
147 148 1.783031 ATAGCACCGGACTAGTCGCG 61.783 60.000 16.56 18.79 0.00 5.87
148 149 4.849329 GCACCGGACTAGTCGCGG 62.849 72.222 33.15 33.15 43.88 6.46
149 150 4.849329 CACCGGACTAGTCGCGGC 62.849 72.222 34.00 16.27 42.87 6.53
152 153 4.883300 CGGACTAGTCGCGGCGTC 62.883 72.222 22.90 17.14 0.00 5.19
153 154 4.549516 GGACTAGTCGCGGCGTCC 62.550 72.222 22.90 19.57 39.14 4.79
154 155 3.807538 GACTAGTCGCGGCGTCCA 61.808 66.667 22.90 4.80 0.00 4.02
155 156 3.736482 GACTAGTCGCGGCGTCCAG 62.736 68.421 22.90 17.16 0.00 3.86
156 157 3.812019 CTAGTCGCGGCGTCCAGT 61.812 66.667 22.90 8.67 0.00 4.00
157 158 3.338126 CTAGTCGCGGCGTCCAGTT 62.338 63.158 22.90 3.33 0.00 3.16
158 159 1.985447 CTAGTCGCGGCGTCCAGTTA 61.985 60.000 22.90 4.37 0.00 2.24
159 160 2.257286 TAGTCGCGGCGTCCAGTTAC 62.257 60.000 22.90 11.04 0.00 2.50
160 161 3.672447 TCGCGGCGTCCAGTTACA 61.672 61.111 22.90 0.00 0.00 2.41
161 162 2.735478 CGCGGCGTCCAGTTACAA 60.735 61.111 15.36 0.00 0.00 2.41
162 163 2.098233 CGCGGCGTCCAGTTACAAT 61.098 57.895 15.36 0.00 0.00 2.71
163 164 1.423845 GCGGCGTCCAGTTACAATG 59.576 57.895 9.37 0.00 0.00 2.82
164 165 1.423845 CGGCGTCCAGTTACAATGC 59.576 57.895 0.00 0.00 0.00 3.56
165 166 1.800681 GGCGTCCAGTTACAATGCC 59.199 57.895 1.10 1.10 37.87 4.40
166 167 1.654023 GGCGTCCAGTTACAATGCCC 61.654 60.000 4.87 0.00 38.83 5.36
167 168 0.958382 GCGTCCAGTTACAATGCCCA 60.958 55.000 0.00 0.00 0.00 5.36
168 169 1.750193 CGTCCAGTTACAATGCCCAT 58.250 50.000 0.00 0.00 0.00 4.00
169 170 1.401552 CGTCCAGTTACAATGCCCATG 59.598 52.381 0.00 0.00 0.00 3.66
170 171 2.446435 GTCCAGTTACAATGCCCATGT 58.554 47.619 0.00 0.00 34.81 3.21
171 172 3.616219 GTCCAGTTACAATGCCCATGTA 58.384 45.455 0.00 0.00 32.27 2.29
172 173 4.013728 GTCCAGTTACAATGCCCATGTAA 58.986 43.478 0.00 2.92 40.07 2.41
173 174 4.096382 GTCCAGTTACAATGCCCATGTAAG 59.904 45.833 6.39 0.00 42.24 2.34
174 175 4.018870 TCCAGTTACAATGCCCATGTAAGA 60.019 41.667 6.39 0.37 42.24 2.10
175 176 4.889409 CCAGTTACAATGCCCATGTAAGAT 59.111 41.667 6.39 0.00 42.24 2.40
176 177 5.221106 CCAGTTACAATGCCCATGTAAGATG 60.221 44.000 6.39 8.13 42.24 2.90
177 178 5.357878 CAGTTACAATGCCCATGTAAGATGT 59.642 40.000 6.39 0.00 42.24 3.06
178 179 5.590259 AGTTACAATGCCCATGTAAGATGTC 59.410 40.000 6.39 0.00 42.24 3.06
179 180 3.966979 ACAATGCCCATGTAAGATGTCA 58.033 40.909 0.00 0.00 0.00 3.58
180 181 4.539726 ACAATGCCCATGTAAGATGTCAT 58.460 39.130 0.00 0.00 0.00 3.06
181 182 4.581824 ACAATGCCCATGTAAGATGTCATC 59.418 41.667 4.52 4.52 0.00 2.92
182 183 2.837498 TGCCCATGTAAGATGTCATCG 58.163 47.619 7.18 0.00 0.00 3.84
183 184 2.433970 TGCCCATGTAAGATGTCATCGA 59.566 45.455 7.18 0.00 0.00 3.59
184 185 2.802816 GCCCATGTAAGATGTCATCGAC 59.197 50.000 7.18 9.91 0.00 4.20
185 186 3.052745 CCCATGTAAGATGTCATCGACG 58.947 50.000 7.18 0.00 34.95 5.12
186 187 3.243401 CCCATGTAAGATGTCATCGACGA 60.243 47.826 0.00 0.00 34.95 4.20
187 188 4.359706 CCATGTAAGATGTCATCGACGAA 58.640 43.478 0.00 0.00 34.95 3.85
188 189 4.803613 CCATGTAAGATGTCATCGACGAAA 59.196 41.667 0.00 0.00 34.95 3.46
189 190 5.276395 CCATGTAAGATGTCATCGACGAAAC 60.276 44.000 0.00 4.14 34.95 2.78
190 191 3.849708 TGTAAGATGTCATCGACGAAACG 59.150 43.478 0.00 0.00 34.95 3.60
191 192 1.909376 AGATGTCATCGACGAAACGG 58.091 50.000 0.00 0.00 34.95 4.44
192 193 1.201647 AGATGTCATCGACGAAACGGT 59.798 47.619 0.00 0.00 34.95 4.83
193 194 1.582502 GATGTCATCGACGAAACGGTC 59.417 52.381 0.00 2.92 34.95 4.79
194 195 0.387622 TGTCATCGACGAAACGGTCC 60.388 55.000 0.00 0.00 34.95 4.46
195 196 0.109412 GTCATCGACGAAACGGTCCT 60.109 55.000 0.00 0.00 33.30 3.85
196 197 1.131126 GTCATCGACGAAACGGTCCTA 59.869 52.381 0.00 0.00 33.30 2.94
197 198 2.019249 TCATCGACGAAACGGTCCTAT 58.981 47.619 0.00 0.00 33.30 2.57
198 199 3.002656 GTCATCGACGAAACGGTCCTATA 59.997 47.826 0.00 0.00 33.30 1.31
199 200 3.817084 TCATCGACGAAACGGTCCTATAT 59.183 43.478 0.00 0.00 33.30 0.86
200 201 3.885484 TCGACGAAACGGTCCTATATC 57.115 47.619 0.00 0.00 33.30 1.63
201 202 3.470709 TCGACGAAACGGTCCTATATCT 58.529 45.455 0.00 0.00 33.30 1.98
202 203 3.249320 TCGACGAAACGGTCCTATATCTG 59.751 47.826 0.00 0.00 33.30 2.90
203 204 3.306818 GACGAAACGGTCCTATATCTGC 58.693 50.000 0.00 0.00 0.00 4.26
204 205 2.957006 ACGAAACGGTCCTATATCTGCT 59.043 45.455 0.00 0.00 0.00 4.24
205 206 4.139786 ACGAAACGGTCCTATATCTGCTA 58.860 43.478 0.00 0.00 0.00 3.49
206 207 4.023365 ACGAAACGGTCCTATATCTGCTAC 60.023 45.833 0.00 0.00 0.00 3.58
207 208 4.023450 CGAAACGGTCCTATATCTGCTACA 60.023 45.833 0.00 0.00 0.00 2.74
208 209 5.335740 CGAAACGGTCCTATATCTGCTACAT 60.336 44.000 0.00 0.00 0.00 2.29
209 210 6.128090 CGAAACGGTCCTATATCTGCTACATA 60.128 42.308 0.00 0.00 0.00 2.29
210 211 7.415318 CGAAACGGTCCTATATCTGCTACATAT 60.415 40.741 0.00 0.00 0.00 1.78
211 212 7.719871 AACGGTCCTATATCTGCTACATATT 57.280 36.000 0.00 0.00 0.00 1.28
212 213 7.719871 ACGGTCCTATATCTGCTACATATTT 57.280 36.000 0.00 0.00 0.00 1.40
213 214 7.548097 ACGGTCCTATATCTGCTACATATTTG 58.452 38.462 0.00 0.00 0.00 2.32
214 215 7.396339 ACGGTCCTATATCTGCTACATATTTGA 59.604 37.037 0.00 0.00 0.00 2.69
215 216 8.251026 CGGTCCTATATCTGCTACATATTTGAA 58.749 37.037 0.00 0.00 0.00 2.69
216 217 9.593134 GGTCCTATATCTGCTACATATTTGAAG 57.407 37.037 0.00 0.00 0.00 3.02
219 220 9.376075 CCTATATCTGCTACATATTTGAAGTGG 57.624 37.037 0.00 0.00 0.00 4.00
231 232 9.300681 ACATATTTGAAGTGGATATTATGGGTG 57.699 33.333 0.00 0.00 0.00 4.61
232 233 6.655078 ATTTGAAGTGGATATTATGGGTGC 57.345 37.500 0.00 0.00 0.00 5.01
233 234 5.387113 TTGAAGTGGATATTATGGGTGCT 57.613 39.130 0.00 0.00 0.00 4.40
234 235 6.508030 TTGAAGTGGATATTATGGGTGCTA 57.492 37.500 0.00 0.00 0.00 3.49
235 236 6.114187 TGAAGTGGATATTATGGGTGCTAG 57.886 41.667 0.00 0.00 0.00 3.42
241 242 5.606749 TGGATATTATGGGTGCTAGTCAACT 59.393 40.000 2.88 0.00 31.53 3.16
247 248 2.029623 GGGTGCTAGTCAACTCGGATA 58.970 52.381 2.88 0.00 31.53 2.59
250 251 4.443034 GGGTGCTAGTCAACTCGGATATTT 60.443 45.833 2.88 0.00 31.53 1.40
251 252 4.508124 GGTGCTAGTCAACTCGGATATTTG 59.492 45.833 0.00 0.00 0.00 2.32
255 256 5.050702 GCTAGTCAACTCGGATATTTGAAGC 60.051 44.000 0.00 0.00 29.50 3.86
257 258 4.080863 AGTCAACTCGGATATTTGAAGCCT 60.081 41.667 0.00 0.00 29.50 4.58
268 269 7.484959 CGGATATTTGAAGCCTGTTTAGAAAAC 59.515 37.037 0.00 0.00 0.00 2.43
274 275 4.388577 AGCCTGTTTAGAAAACCCATCT 57.611 40.909 0.41 0.00 0.00 2.90
280 281 4.994852 TGTTTAGAAAACCCATCTGAGTCG 59.005 41.667 0.41 0.00 0.00 4.18
291 292 2.148916 TCTGAGTCGCATTTTCGTGT 57.851 45.000 0.00 0.00 0.00 4.49
312 313 1.004200 GGTCAATGACCGGACCGTT 60.004 57.895 17.46 0.00 43.14 4.44
318 319 2.125952 GACCGGACCGTTTACCCG 60.126 66.667 9.46 0.00 42.64 5.28
322 323 0.459489 CCGGACCGTTTACCCGAATA 59.541 55.000 13.94 0.00 45.58 1.75
324 325 2.483538 CCGGACCGTTTACCCGAATATT 60.484 50.000 13.94 0.00 45.58 1.28
326 327 4.367450 CGGACCGTTTACCCGAATATTTA 58.633 43.478 5.48 0.00 45.58 1.40
327 328 4.808364 CGGACCGTTTACCCGAATATTTAA 59.192 41.667 5.48 0.00 45.58 1.52
336 337 7.903995 TTACCCGAATATTTAAGACACGTTT 57.096 32.000 0.00 0.00 0.00 3.60
337 338 6.173191 ACCCGAATATTTAAGACACGTTTG 57.827 37.500 0.00 0.00 0.00 2.93
338 339 5.122711 ACCCGAATATTTAAGACACGTTTGG 59.877 40.000 0.00 0.00 0.00 3.28
339 340 5.448089 CCCGAATATTTAAGACACGTTTGGG 60.448 44.000 0.00 0.00 33.69 4.12
340 341 5.352016 CCGAATATTTAAGACACGTTTGGGA 59.648 40.000 0.00 0.00 0.00 4.37
341 342 6.245724 CGAATATTTAAGACACGTTTGGGAC 58.754 40.000 0.00 0.00 0.00 4.46
342 343 6.128499 CGAATATTTAAGACACGTTTGGGACA 60.128 38.462 0.00 0.00 0.00 4.02
343 344 7.413657 CGAATATTTAAGACACGTTTGGGACAT 60.414 37.037 0.00 0.00 39.30 3.06
344 345 5.622770 ATTTAAGACACGTTTGGGACATC 57.377 39.130 0.00 0.00 39.30 3.06
345 346 1.892209 AAGACACGTTTGGGACATCC 58.108 50.000 0.00 0.00 39.30 3.51
346 347 0.762418 AGACACGTTTGGGACATCCA 59.238 50.000 0.00 0.00 45.43 3.41
365 366 6.440010 ACATCCAGCTATAGATGCTCTTACAT 59.560 38.462 12.62 0.00 43.01 2.29
373 374 8.386606 GCTATAGATGCTCTTACATATTGCAAC 58.613 37.037 0.00 0.00 37.20 4.17
386 387 6.551736 ACATATTGCAACCTAAAACTTAGCG 58.448 36.000 0.00 0.00 0.00 4.26
396 397 5.529800 ACCTAAAACTTAGCGTCAAACACAT 59.470 36.000 0.00 0.00 0.00 3.21
399 400 2.494059 ACTTAGCGTCAAACACATGCT 58.506 42.857 0.00 0.00 39.51 3.79
405 406 2.225491 GCGTCAAACACATGCTCCTTTA 59.775 45.455 0.00 0.00 0.00 1.85
407 408 4.466828 CGTCAAACACATGCTCCTTTAAG 58.533 43.478 0.00 0.00 0.00 1.85
411 412 6.417930 GTCAAACACATGCTCCTTTAAGTTTC 59.582 38.462 0.00 0.00 0.00 2.78
415 416 5.006386 CACATGCTCCTTTAAGTTTCTCCT 58.994 41.667 0.00 0.00 0.00 3.69
428 429 3.493503 AGTTTCTCCTAACTTTCGCGTTG 59.506 43.478 5.77 0.00 34.81 4.10
482 484 4.201920 GCTTAATCTTTTACGGGCTCAAGG 60.202 45.833 0.00 0.00 0.00 3.61
538 540 5.184287 CGGAAATGGTAAACAGTAAATGGGT 59.816 40.000 0.00 0.00 0.00 4.51
627 629 1.224075 CTCAGCTGCAATACCATCCG 58.776 55.000 9.47 0.00 0.00 4.18
660 662 1.920325 CCAGCCCCTCAGAGGACAA 60.920 63.158 19.21 0.00 37.67 3.18
670 672 3.129638 CCTCAGAGGACAACTAGCACTAC 59.870 52.174 11.62 0.00 37.67 2.73
835 838 7.043656 GGCGACCAATAAATTCCTAATTTTTCG 60.044 37.037 3.19 5.96 41.16 3.46
845 848 4.789784 TCCTAATTTTTCGCACTTTTCCG 58.210 39.130 0.00 0.00 0.00 4.30
1094 1100 5.691305 CAGATCTTGTCTCCAGATCGAATTC 59.309 44.000 0.00 0.00 42.18 2.17
1180 1186 3.492337 GATCTTAGGATGGAGACGAGGT 58.508 50.000 0.00 0.00 31.46 3.85
1207 1213 0.038159 CCTTGCCTATCGGATCCGTC 60.038 60.000 32.15 17.34 40.74 4.79
1219 1225 2.028130 GGATCCGTCTGTCTGATCAGT 58.972 52.381 21.92 0.00 38.14 3.41
1498 1504 4.058124 TCGCTACATTGATCTGGCATTAC 58.942 43.478 0.00 0.00 0.00 1.89
1683 1689 6.931838 TGTCTGGGTTAGTTTACTGTATCTG 58.068 40.000 0.00 0.00 0.00 2.90
2019 2025 3.610040 TGTGATGTTACAGGTAGCTGG 57.390 47.619 24.84 8.17 0.00 4.85
2060 2066 7.080724 GGATAAACAGCTCAGTGAAAAGAAAG 58.919 38.462 0.00 0.00 0.00 2.62
2061 2067 5.904362 AAACAGCTCAGTGAAAAGAAAGT 57.096 34.783 0.00 0.00 0.00 2.66
2211 2218 1.449070 CAGCTGAGAATGGCGCAGA 60.449 57.895 8.42 0.00 46.01 4.26
2339 2346 4.405548 TGTCATTCATCCATGTGGTTTCA 58.594 39.130 0.00 0.00 36.34 2.69
2343 2350 5.125900 TCATTCATCCATGTGGTTTCATGAC 59.874 40.000 0.00 0.00 45.41 3.06
2438 2445 1.825474 CCTAGCCCGTTCTCTGAAGAA 59.175 52.381 0.00 0.00 39.22 2.52
2474 2481 4.520492 AGTTCTGCTCGTTCATTGGAAAAT 59.480 37.500 0.00 0.00 34.13 1.82
2568 2583 6.641161 AATGAAATTCCTGGGGCTTTTTAT 57.359 33.333 0.00 0.00 0.00 1.40
2737 2752 3.031013 AGGTAAAAAGGCTGCAAGTTGT 58.969 40.909 4.48 0.00 35.30 3.32
2753 2768 6.138761 GCAAGTTGTAAGAATGAGTGAACAG 58.861 40.000 4.48 0.00 0.00 3.16
2759 2774 3.051081 AGAATGAGTGAACAGCTGGTC 57.949 47.619 25.30 25.30 0.00 4.02
2860 2875 7.450074 TGGACTGTAGTACTGATTGTTCAATT 58.550 34.615 13.54 0.00 0.00 2.32
2861 2876 7.936847 TGGACTGTAGTACTGATTGTTCAATTT 59.063 33.333 13.54 0.00 0.00 1.82
2862 2877 8.784043 GGACTGTAGTACTGATTGTTCAATTTT 58.216 33.333 13.54 0.00 0.00 1.82
2912 2931 4.730657 CTTGTCCAGACATTCAGAATTGC 58.269 43.478 0.48 0.00 41.52 3.56
3054 3073 1.667722 CTTTTGTGCCCCCTTCAGC 59.332 57.895 0.00 0.00 0.00 4.26
3104 3123 4.780021 AGGTGATTGGTGATAAGACTGAGT 59.220 41.667 0.00 0.00 0.00 3.41
3144 3163 9.725019 CTACCATTAGAACATAAGATATTGGCA 57.275 33.333 0.00 0.00 0.00 4.92
3386 3414 5.057819 GCCTTACCTATTCCTGTAAGCTTC 58.942 45.833 0.00 0.00 41.55 3.86
3392 3420 6.195700 ACCTATTCCTGTAAGCTTCTCACTA 58.804 40.000 0.00 0.00 0.00 2.74
3397 3425 3.929610 CCTGTAAGCTTCTCACTACTTGC 59.070 47.826 0.00 0.00 0.00 4.01
3499 3535 0.782384 GGTTAGTTGTGTCGAGTGCG 59.218 55.000 0.00 0.00 39.35 5.34
3550 3586 1.961277 GTGCGTGGGAACTGGTCTG 60.961 63.158 0.00 0.00 0.00 3.51
3659 3695 4.875544 GCTACTGTATGCCAATTCGAAA 57.124 40.909 0.00 0.00 0.00 3.46
3662 3698 5.739161 GCTACTGTATGCCAATTCGAAAAAG 59.261 40.000 0.00 0.00 0.00 2.27
3668 3704 6.526325 TGTATGCCAATTCGAAAAAGAAATCG 59.474 34.615 0.00 0.00 40.31 3.34
3672 3708 5.387342 GCCAATTCGAAAAAGAAATCGTGTG 60.387 40.000 0.00 0.00 39.91 3.82
3679 3715 4.647424 AAAAGAAATCGTGTGGCTTTGA 57.353 36.364 0.00 0.00 0.00 2.69
3945 3981 2.225068 ACTGTGACAGTTCTGAACCG 57.775 50.000 13.33 9.47 42.59 4.44
3963 3999 1.942657 CCGATGCTGTATTCTTGGGTG 59.057 52.381 0.00 0.00 0.00 4.61
3977 4013 9.403583 GTATTCTTGGGTGTTATTCTGGAATTA 57.596 33.333 1.01 0.00 32.50 1.40
4037 4073 0.478507 AAGGTGACTCAAGGGGTTGG 59.521 55.000 0.00 0.00 42.68 3.77
4187 4226 5.873164 GCTCGTCCTAACCAAGAAATCTTTA 59.127 40.000 0.00 0.00 33.11 1.85
4387 4429 2.998670 CACGAGAAGATGCAGTGATTGT 59.001 45.455 0.00 0.00 35.03 2.71
4607 4649 6.964464 TGGGTCTCTGGCAAGTTAAATATAA 58.036 36.000 0.00 0.00 0.00 0.98
4608 4650 6.826741 TGGGTCTCTGGCAAGTTAAATATAAC 59.173 38.462 0.00 0.00 41.45 1.89
4782 4824 5.050363 GCGAAGTTGAACACAGTTTATCAGA 60.050 40.000 0.00 0.00 0.00 3.27
4783 4825 6.511121 GCGAAGTTGAACACAGTTTATCAGAA 60.511 38.462 0.00 0.00 0.00 3.02
4784 4826 7.576236 CGAAGTTGAACACAGTTTATCAGAAT 58.424 34.615 0.00 0.00 0.00 2.40
4785 4827 8.070171 CGAAGTTGAACACAGTTTATCAGAATT 58.930 33.333 0.00 0.00 0.00 2.17
4870 4912 5.163814 CGGTTTCTCAATCACCTTCTTGATC 60.164 44.000 0.00 0.00 35.02 2.92
4876 4918 3.703001 ATCACCTTCTTGATCGTGGTT 57.297 42.857 0.00 0.00 29.74 3.67
4943 4985 3.055747 GGAGAAGAGTAGTCCCCAACAAG 60.056 52.174 0.00 0.00 0.00 3.16
5147 5189 2.721797 GCTGCAAGTTATGTCACGTTCG 60.722 50.000 0.00 0.00 35.30 3.95
5152 5194 2.695359 AGTTATGTCACGTTCGCCATT 58.305 42.857 0.00 0.00 0.00 3.16
5153 5195 2.671396 AGTTATGTCACGTTCGCCATTC 59.329 45.455 0.00 0.00 0.00 2.67
5154 5196 2.665649 TATGTCACGTTCGCCATTCT 57.334 45.000 0.00 0.00 0.00 2.40
5155 5197 2.665649 ATGTCACGTTCGCCATTCTA 57.334 45.000 0.00 0.00 0.00 2.10
5156 5198 2.665649 TGTCACGTTCGCCATTCTAT 57.334 45.000 0.00 0.00 0.00 1.98
5157 5199 2.967362 TGTCACGTTCGCCATTCTATT 58.033 42.857 0.00 0.00 0.00 1.73
5158 5200 2.927477 TGTCACGTTCGCCATTCTATTC 59.073 45.455 0.00 0.00 0.00 1.75
5159 5201 3.187700 GTCACGTTCGCCATTCTATTCT 58.812 45.455 0.00 0.00 0.00 2.40
5160 5202 4.142337 TGTCACGTTCGCCATTCTATTCTA 60.142 41.667 0.00 0.00 0.00 2.10
5161 5203 4.802039 GTCACGTTCGCCATTCTATTCTAA 59.198 41.667 0.00 0.00 0.00 2.10
5162 5204 4.802039 TCACGTTCGCCATTCTATTCTAAC 59.198 41.667 0.00 0.00 0.00 2.34
5163 5205 4.804139 CACGTTCGCCATTCTATTCTAACT 59.196 41.667 0.00 0.00 0.00 2.24
5195 5241 5.734720 TCATTCTAATCTCACCTTGTGACC 58.265 41.667 0.00 0.00 37.67 4.02
5196 5242 3.868757 TCTAATCTCACCTTGTGACCG 57.131 47.619 0.00 0.00 37.67 4.79
5258 5304 5.344743 TCATGGAACTCCTGACATCTTAC 57.655 43.478 0.00 0.00 36.82 2.34
5347 5393 5.401531 AGGTCTGTTTAAGCTGTCGATTA 57.598 39.130 0.00 0.00 0.00 1.75
5400 5446 6.607198 TGATTCATGTGTCTGATCCTACAGTA 59.393 38.462 0.00 0.00 38.79 2.74
5408 5454 6.041069 GTGTCTGATCCTACAGTAAGGCTTAT 59.959 42.308 10.65 0.00 38.79 1.73
5457 5503 0.749454 ACGTATAGTTCCGGACGCCT 60.749 55.000 1.83 2.75 38.86 5.52
5551 5597 2.579787 GTGGCGACGATCCTGACG 60.580 66.667 0.00 0.00 0.00 4.35
5568 5614 2.284995 GAGAGAGCAGGGGGTGGT 60.285 66.667 0.00 0.00 40.54 4.16
5743 5789 4.200283 CCGCCTCCGCTGTCTCTC 62.200 72.222 0.00 0.00 0.00 3.20
5793 5851 1.964290 ATGTCGTCGTCGTCGTCCTC 61.964 60.000 11.41 2.99 38.33 3.71
5847 5939 0.739462 TTAGGCTTCGACATGCACCG 60.739 55.000 0.00 0.00 0.00 4.94
5872 5964 6.292008 GGTTTCTCCGTATATGTAAAGAACGC 60.292 42.308 0.00 0.00 32.43 4.84
5901 5993 6.127281 TGCCATAACAGTTTCTCCGTATCTTA 60.127 38.462 0.00 0.00 0.00 2.10
5902 5994 6.421202 GCCATAACAGTTTCTCCGTATCTTAG 59.579 42.308 0.00 0.00 0.00 2.18
5903 5995 7.683704 GCCATAACAGTTTCTCCGTATCTTAGA 60.684 40.741 0.00 0.00 0.00 2.10
5904 5996 8.361139 CCATAACAGTTTCTCCGTATCTTAGAT 58.639 37.037 0.00 0.00 0.00 1.98
5908 6000 8.522542 ACAGTTTCTCCGTATCTTAGATAACT 57.477 34.615 3.22 1.42 0.00 2.24
5909 6001 8.968969 ACAGTTTCTCCGTATCTTAGATAACTT 58.031 33.333 3.22 0.00 0.00 2.66
5910 6002 9.239002 CAGTTTCTCCGTATCTTAGATAACTTG 57.761 37.037 3.22 0.00 0.00 3.16
5911 6003 8.414778 AGTTTCTCCGTATCTTAGATAACTTGG 58.585 37.037 3.22 4.51 0.00 3.61
5912 6004 7.893124 TTCTCCGTATCTTAGATAACTTGGT 57.107 36.000 3.22 0.00 0.00 3.67
5913 6005 8.985315 TTCTCCGTATCTTAGATAACTTGGTA 57.015 34.615 3.22 0.00 0.00 3.25
5914 6006 8.985315 TCTCCGTATCTTAGATAACTTGGTAA 57.015 34.615 3.22 0.00 0.00 2.85
5915 6007 9.064706 TCTCCGTATCTTAGATAACTTGGTAAG 57.935 37.037 3.22 0.30 0.00 2.34
5916 6008 8.985315 TCCGTATCTTAGATAACTTGGTAAGA 57.015 34.615 3.22 0.00 0.00 2.10
5917 6009 8.844244 TCCGTATCTTAGATAACTTGGTAAGAC 58.156 37.037 3.22 0.00 0.00 3.01
5918 6010 8.848182 CCGTATCTTAGATAACTTGGTAAGACT 58.152 37.037 3.22 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.024414 GGGATTCTGGGATTTTGGACG 58.976 52.381 0.00 0.00 0.00 4.79
1 2 3.026694 CTGGGATTCTGGGATTTTGGAC 58.973 50.000 0.00 0.00 0.00 4.02
3 4 3.386932 TCTGGGATTCTGGGATTTTGG 57.613 47.619 0.00 0.00 0.00 3.28
4 5 4.100498 CCAATCTGGGATTCTGGGATTTTG 59.900 45.833 0.00 0.00 32.67 2.44
5 6 4.292643 CCAATCTGGGATTCTGGGATTTT 58.707 43.478 0.00 0.00 32.67 1.82
6 7 3.919834 CCAATCTGGGATTCTGGGATTT 58.080 45.455 0.00 0.00 32.67 2.17
7 8 3.607490 CCAATCTGGGATTCTGGGATT 57.393 47.619 0.00 0.00 32.67 3.01
19 20 1.815421 CCGAAGCGTCCCAATCTGG 60.815 63.158 0.00 0.00 37.25 3.86
20 21 2.464459 GCCGAAGCGTCCCAATCTG 61.464 63.158 0.00 0.00 0.00 2.90
21 22 2.125106 GCCGAAGCGTCCCAATCT 60.125 61.111 0.00 0.00 0.00 2.40
22 23 2.435938 TGCCGAAGCGTCCCAATC 60.436 61.111 0.00 0.00 44.31 2.67
23 24 2.436646 CTGCCGAAGCGTCCCAAT 60.437 61.111 0.00 0.00 44.31 3.16
24 25 3.876589 GACTGCCGAAGCGTCCCAA 62.877 63.158 0.00 0.00 44.31 4.12
25 26 4.373116 GACTGCCGAAGCGTCCCA 62.373 66.667 0.00 0.00 44.31 4.37
26 27 3.991536 GAGACTGCCGAAGCGTCCC 62.992 68.421 0.00 0.00 44.31 4.46
27 28 2.507324 GAGACTGCCGAAGCGTCC 60.507 66.667 0.00 0.00 44.31 4.79
28 29 2.876645 CGAGACTGCCGAAGCGTC 60.877 66.667 0.00 0.00 44.31 5.19
32 33 2.876645 GACGCGAGACTGCCGAAG 60.877 66.667 15.93 0.00 0.00 3.79
33 34 4.753877 CGACGCGAGACTGCCGAA 62.754 66.667 15.93 0.00 0.00 4.30
37 38 2.634702 CTAGGACGACGCGAGACTGC 62.635 65.000 15.93 0.00 0.00 4.40
38 39 1.348938 CTAGGACGACGCGAGACTG 59.651 63.158 15.93 0.00 0.00 3.51
39 40 2.462782 GCTAGGACGACGCGAGACT 61.463 63.158 15.93 12.40 0.00 3.24
40 41 2.023041 GCTAGGACGACGCGAGAC 59.977 66.667 15.93 6.69 0.00 3.36
41 42 1.978712 CTTGCTAGGACGACGCGAGA 61.979 60.000 15.93 0.00 37.35 4.04
42 43 1.583967 CTTGCTAGGACGACGCGAG 60.584 63.158 15.93 9.24 0.00 5.03
43 44 2.330372 ACTTGCTAGGACGACGCGA 61.330 57.895 15.93 0.00 0.00 5.87
44 45 2.152699 CACTTGCTAGGACGACGCG 61.153 63.158 3.53 3.53 0.00 6.01
45 46 0.388134 TTCACTTGCTAGGACGACGC 60.388 55.000 0.00 0.00 0.00 5.19
46 47 1.920574 CATTCACTTGCTAGGACGACG 59.079 52.381 0.00 0.00 0.00 5.12
47 48 1.661112 GCATTCACTTGCTAGGACGAC 59.339 52.381 0.00 0.00 39.57 4.34
48 49 1.405526 GGCATTCACTTGCTAGGACGA 60.406 52.381 0.00 0.00 42.38 4.20
49 50 1.009829 GGCATTCACTTGCTAGGACG 58.990 55.000 0.00 0.00 42.38 4.79
50 51 1.009829 CGGCATTCACTTGCTAGGAC 58.990 55.000 0.00 0.00 42.38 3.85
51 52 0.107703 CCGGCATTCACTTGCTAGGA 60.108 55.000 0.00 0.00 42.38 2.94
52 53 0.392998 ACCGGCATTCACTTGCTAGG 60.393 55.000 0.00 8.94 42.38 3.02
53 54 0.729116 CACCGGCATTCACTTGCTAG 59.271 55.000 0.00 0.00 42.38 3.42
54 55 0.676466 CCACCGGCATTCACTTGCTA 60.676 55.000 0.00 0.00 42.38 3.49
55 56 1.973281 CCACCGGCATTCACTTGCT 60.973 57.895 0.00 0.00 42.38 3.91
56 57 2.568090 CCACCGGCATTCACTTGC 59.432 61.111 0.00 0.00 42.01 4.01
67 68 0.828022 TTCTGTATACCTGCCACCGG 59.172 55.000 0.00 0.00 0.00 5.28
68 69 1.754803 TCTTCTGTATACCTGCCACCG 59.245 52.381 0.00 0.00 0.00 4.94
69 70 2.500098 TGTCTTCTGTATACCTGCCACC 59.500 50.000 0.00 0.00 0.00 4.61
70 71 3.522553 GTGTCTTCTGTATACCTGCCAC 58.477 50.000 0.00 0.00 0.00 5.01
71 72 2.500098 GGTGTCTTCTGTATACCTGCCA 59.500 50.000 0.00 0.00 0.00 4.92
72 73 2.500098 TGGTGTCTTCTGTATACCTGCC 59.500 50.000 0.00 0.00 32.68 4.85
73 74 3.887621 TGGTGTCTTCTGTATACCTGC 57.112 47.619 0.00 0.00 32.68 4.85
74 75 5.598416 TGATGGTGTCTTCTGTATACCTG 57.402 43.478 0.00 0.00 32.68 4.00
75 76 5.453903 GCATGATGGTGTCTTCTGTATACCT 60.454 44.000 0.00 0.00 32.68 3.08
76 77 4.752101 GCATGATGGTGTCTTCTGTATACC 59.248 45.833 0.00 0.00 0.00 2.73
77 78 5.359756 TGCATGATGGTGTCTTCTGTATAC 58.640 41.667 0.00 0.00 0.00 1.47
78 79 5.612725 TGCATGATGGTGTCTTCTGTATA 57.387 39.130 0.00 0.00 0.00 1.47
79 80 4.492494 TGCATGATGGTGTCTTCTGTAT 57.508 40.909 0.00 0.00 0.00 2.29
80 81 3.979101 TGCATGATGGTGTCTTCTGTA 57.021 42.857 0.00 0.00 0.00 2.74
81 82 2.865119 TGCATGATGGTGTCTTCTGT 57.135 45.000 0.00 0.00 0.00 3.41
82 83 2.357952 CCATGCATGATGGTGTCTTCTG 59.642 50.000 28.31 2.27 46.20 3.02
83 84 2.651455 CCATGCATGATGGTGTCTTCT 58.349 47.619 28.31 0.00 46.20 2.85
92 93 0.032130 GCAAGAGGCCATGCATGATG 59.968 55.000 28.31 13.23 42.12 3.07
93 94 0.106167 AGCAAGAGGCCATGCATGAT 60.106 50.000 28.31 13.17 46.50 2.45
94 95 0.547553 TAGCAAGAGGCCATGCATGA 59.452 50.000 28.31 10.71 46.50 3.07
95 96 1.269723 CATAGCAAGAGGCCATGCATG 59.730 52.381 24.39 20.19 46.50 4.06
96 97 1.617322 CATAGCAAGAGGCCATGCAT 58.383 50.000 24.39 15.12 46.50 3.96
97 98 0.466739 CCATAGCAAGAGGCCATGCA 60.467 55.000 24.39 13.87 46.50 3.96
98 99 1.803366 GCCATAGCAAGAGGCCATGC 61.803 60.000 17.56 17.56 46.50 4.06
99 100 1.512996 CGCCATAGCAAGAGGCCATG 61.513 60.000 5.01 1.50 45.56 3.66
100 101 1.228063 CGCCATAGCAAGAGGCCAT 60.228 57.895 5.01 0.00 45.56 4.40
101 102 2.190313 CGCCATAGCAAGAGGCCA 59.810 61.111 5.01 0.00 45.56 5.36
102 103 1.889573 GACGCCATAGCAAGAGGCC 60.890 63.158 0.00 0.00 45.56 5.19
103 104 1.889573 GGACGCCATAGCAAGAGGC 60.890 63.158 0.00 0.00 44.89 4.70
104 105 0.179000 AAGGACGCCATAGCAAGAGG 59.821 55.000 0.00 0.00 39.83 3.69
105 106 1.293924 CAAGGACGCCATAGCAAGAG 58.706 55.000 0.00 0.00 39.83 2.85
106 107 0.613260 ACAAGGACGCCATAGCAAGA 59.387 50.000 0.00 0.00 39.83 3.02
107 108 1.009829 GACAAGGACGCCATAGCAAG 58.990 55.000 0.00 0.00 39.83 4.01
108 109 0.323302 TGACAAGGACGCCATAGCAA 59.677 50.000 0.00 0.00 39.83 3.91
109 110 0.323302 TTGACAAGGACGCCATAGCA 59.677 50.000 0.00 0.00 39.83 3.49
110 111 1.668419 ATTGACAAGGACGCCATAGC 58.332 50.000 0.00 0.00 0.00 2.97
111 112 2.802816 GCTATTGACAAGGACGCCATAG 59.197 50.000 0.00 0.00 0.00 2.23
112 113 2.169561 TGCTATTGACAAGGACGCCATA 59.830 45.455 0.00 0.00 0.00 2.74
113 114 1.065491 TGCTATTGACAAGGACGCCAT 60.065 47.619 0.00 0.00 0.00 4.40
114 115 0.323302 TGCTATTGACAAGGACGCCA 59.677 50.000 0.00 0.00 0.00 5.69
115 116 0.727398 GTGCTATTGACAAGGACGCC 59.273 55.000 0.00 0.00 0.00 5.68
116 117 0.727398 GGTGCTATTGACAAGGACGC 59.273 55.000 0.00 0.00 36.27 5.19
117 118 0.999406 CGGTGCTATTGACAAGGACG 59.001 55.000 0.00 0.00 36.27 4.79
118 119 1.066430 TCCGGTGCTATTGACAAGGAC 60.066 52.381 0.00 0.00 34.82 3.85
119 120 1.066430 GTCCGGTGCTATTGACAAGGA 60.066 52.381 0.00 0.00 0.00 3.36
120 121 1.066143 AGTCCGGTGCTATTGACAAGG 60.066 52.381 0.00 0.00 0.00 3.61
121 122 2.386661 AGTCCGGTGCTATTGACAAG 57.613 50.000 0.00 0.00 0.00 3.16
122 123 2.829720 ACTAGTCCGGTGCTATTGACAA 59.170 45.455 0.00 0.00 0.00 3.18
123 124 2.426024 GACTAGTCCGGTGCTATTGACA 59.574 50.000 12.13 0.00 0.00 3.58
124 125 2.541178 CGACTAGTCCGGTGCTATTGAC 60.541 54.545 17.23 0.00 0.00 3.18
125 126 1.674441 CGACTAGTCCGGTGCTATTGA 59.326 52.381 17.23 0.00 0.00 2.57
126 127 1.864435 GCGACTAGTCCGGTGCTATTG 60.864 57.143 17.23 0.30 0.00 1.90
127 128 0.384669 GCGACTAGTCCGGTGCTATT 59.615 55.000 17.23 0.00 0.00 1.73
128 129 1.783031 CGCGACTAGTCCGGTGCTAT 61.783 60.000 17.23 0.00 0.00 2.97
129 130 2.466982 CGCGACTAGTCCGGTGCTA 61.467 63.158 17.23 4.83 0.00 3.49
130 131 3.812019 CGCGACTAGTCCGGTGCT 61.812 66.667 17.23 3.73 0.00 4.40
131 132 4.849329 CCGCGACTAGTCCGGTGC 62.849 72.222 29.68 21.05 38.07 5.01
132 133 4.849329 GCCGCGACTAGTCCGGTG 62.849 72.222 33.81 21.82 41.90 4.94
135 136 4.883300 GACGCCGCGACTAGTCCG 62.883 72.222 21.79 19.07 0.00 4.79
136 137 4.549516 GGACGCCGCGACTAGTCC 62.550 72.222 21.79 20.11 45.07 3.85
137 138 3.736482 CTGGACGCCGCGACTAGTC 62.736 68.421 21.79 13.18 0.00 2.59
138 139 3.812019 CTGGACGCCGCGACTAGT 61.812 66.667 21.79 0.00 0.00 2.57
139 140 1.985447 TAACTGGACGCCGCGACTAG 61.985 60.000 22.62 22.62 36.46 2.57
140 141 2.039974 TAACTGGACGCCGCGACTA 61.040 57.895 21.79 10.72 0.00 2.59
141 142 3.367743 TAACTGGACGCCGCGACT 61.368 61.111 21.79 0.00 0.00 4.18
142 143 3.177249 GTAACTGGACGCCGCGAC 61.177 66.667 21.79 13.89 0.00 5.19
143 144 2.495366 ATTGTAACTGGACGCCGCGA 62.495 55.000 21.79 0.00 0.00 5.87
144 145 2.098233 ATTGTAACTGGACGCCGCG 61.098 57.895 12.14 12.14 0.00 6.46
145 146 1.423845 CATTGTAACTGGACGCCGC 59.576 57.895 0.00 0.00 0.00 6.53
146 147 1.423845 GCATTGTAACTGGACGCCG 59.576 57.895 0.00 0.00 0.00 6.46
147 148 1.654023 GGGCATTGTAACTGGACGCC 61.654 60.000 0.00 0.00 37.33 5.68
148 149 0.958382 TGGGCATTGTAACTGGACGC 60.958 55.000 0.00 0.00 0.00 5.19
149 150 1.401552 CATGGGCATTGTAACTGGACG 59.598 52.381 0.00 0.00 0.00 4.79
150 151 2.446435 ACATGGGCATTGTAACTGGAC 58.554 47.619 0.00 0.00 0.00 4.02
151 152 2.897271 ACATGGGCATTGTAACTGGA 57.103 45.000 0.00 0.00 0.00 3.86
152 153 4.269183 TCTTACATGGGCATTGTAACTGG 58.731 43.478 0.00 0.87 0.00 4.00
153 154 5.357878 ACATCTTACATGGGCATTGTAACTG 59.642 40.000 0.00 9.60 0.00 3.16
154 155 5.509498 ACATCTTACATGGGCATTGTAACT 58.491 37.500 0.00 0.00 0.00 2.24
155 156 5.356751 TGACATCTTACATGGGCATTGTAAC 59.643 40.000 0.00 0.65 0.00 2.50
156 157 5.504853 TGACATCTTACATGGGCATTGTAA 58.495 37.500 10.03 10.03 0.00 2.41
157 158 5.109500 TGACATCTTACATGGGCATTGTA 57.891 39.130 0.00 0.00 0.00 2.41
158 159 3.966979 TGACATCTTACATGGGCATTGT 58.033 40.909 0.00 0.00 0.00 2.71
159 160 4.319984 CGATGACATCTTACATGGGCATTG 60.320 45.833 13.45 0.00 0.00 2.82
160 161 3.817084 CGATGACATCTTACATGGGCATT 59.183 43.478 13.45 0.00 0.00 3.56
161 162 3.071457 TCGATGACATCTTACATGGGCAT 59.929 43.478 13.45 0.00 0.00 4.40
162 163 2.433970 TCGATGACATCTTACATGGGCA 59.566 45.455 13.45 0.00 0.00 5.36
163 164 2.802816 GTCGATGACATCTTACATGGGC 59.197 50.000 13.45 0.00 32.09 5.36
164 165 3.052745 CGTCGATGACATCTTACATGGG 58.947 50.000 13.45 0.00 32.09 4.00
165 166 3.964909 TCGTCGATGACATCTTACATGG 58.035 45.455 13.45 0.00 32.09 3.66
166 167 5.552656 CGTTTCGTCGATGACATCTTACATG 60.553 44.000 6.88 0.00 32.09 3.21
167 168 4.499399 CGTTTCGTCGATGACATCTTACAT 59.501 41.667 6.88 0.00 32.09 2.29
168 169 3.849708 CGTTTCGTCGATGACATCTTACA 59.150 43.478 6.88 0.00 32.09 2.41
169 170 3.239941 CCGTTTCGTCGATGACATCTTAC 59.760 47.826 6.88 10.05 32.09 2.34
170 171 3.119743 ACCGTTTCGTCGATGACATCTTA 60.120 43.478 6.88 0.00 32.09 2.10
171 172 2.259618 CCGTTTCGTCGATGACATCTT 58.740 47.619 6.88 0.00 32.09 2.40
172 173 1.201647 ACCGTTTCGTCGATGACATCT 59.798 47.619 6.88 0.00 32.09 2.90
173 174 1.582502 GACCGTTTCGTCGATGACATC 59.417 52.381 6.88 5.28 32.09 3.06
174 175 1.625616 GACCGTTTCGTCGATGACAT 58.374 50.000 6.88 0.00 32.09 3.06
175 176 0.387622 GGACCGTTTCGTCGATGACA 60.388 55.000 6.88 0.00 33.30 3.58
176 177 0.109412 AGGACCGTTTCGTCGATGAC 60.109 55.000 6.88 0.00 33.30 3.06
177 178 1.452110 TAGGACCGTTTCGTCGATGA 58.548 50.000 2.39 2.39 33.30 2.92
178 179 2.486951 ATAGGACCGTTTCGTCGATG 57.513 50.000 0.00 0.00 33.30 3.84
179 180 4.070716 AGATATAGGACCGTTTCGTCGAT 58.929 43.478 0.00 0.00 33.30 3.59
180 181 3.249320 CAGATATAGGACCGTTTCGTCGA 59.751 47.826 0.00 0.00 33.30 4.20
181 182 3.552541 CAGATATAGGACCGTTTCGTCG 58.447 50.000 0.00 0.00 33.30 5.12
182 183 3.004524 AGCAGATATAGGACCGTTTCGTC 59.995 47.826 0.00 0.00 0.00 4.20
183 184 2.957006 AGCAGATATAGGACCGTTTCGT 59.043 45.455 0.00 0.00 0.00 3.85
184 185 3.644884 AGCAGATATAGGACCGTTTCG 57.355 47.619 0.00 0.00 0.00 3.46
185 186 5.449107 TGTAGCAGATATAGGACCGTTTC 57.551 43.478 0.00 0.00 0.00 2.78
186 187 7.719871 ATATGTAGCAGATATAGGACCGTTT 57.280 36.000 0.00 0.00 0.00 3.60
187 188 7.719871 AATATGTAGCAGATATAGGACCGTT 57.280 36.000 0.00 0.00 0.00 4.44
188 189 7.396339 TCAAATATGTAGCAGATATAGGACCGT 59.604 37.037 0.00 0.00 0.00 4.83
189 190 7.772166 TCAAATATGTAGCAGATATAGGACCG 58.228 38.462 0.00 0.00 0.00 4.79
190 191 9.593134 CTTCAAATATGTAGCAGATATAGGACC 57.407 37.037 0.00 0.00 0.00 4.46
193 194 9.376075 CCACTTCAAATATGTAGCAGATATAGG 57.624 37.037 0.00 0.00 0.00 2.57
205 206 9.300681 CACCCATAATATCCACTTCAAATATGT 57.699 33.333 0.00 0.00 0.00 2.29
206 207 8.246180 GCACCCATAATATCCACTTCAAATATG 58.754 37.037 0.00 0.00 0.00 1.78
207 208 8.172741 AGCACCCATAATATCCACTTCAAATAT 58.827 33.333 0.00 0.00 0.00 1.28
208 209 7.526041 AGCACCCATAATATCCACTTCAAATA 58.474 34.615 0.00 0.00 0.00 1.40
209 210 6.376248 AGCACCCATAATATCCACTTCAAAT 58.624 36.000 0.00 0.00 0.00 2.32
210 211 5.765510 AGCACCCATAATATCCACTTCAAA 58.234 37.500 0.00 0.00 0.00 2.69
211 212 5.387113 AGCACCCATAATATCCACTTCAA 57.613 39.130 0.00 0.00 0.00 2.69
212 213 5.606749 ACTAGCACCCATAATATCCACTTCA 59.393 40.000 0.00 0.00 0.00 3.02
213 214 6.115448 ACTAGCACCCATAATATCCACTTC 57.885 41.667 0.00 0.00 0.00 3.01
214 215 5.606749 TGACTAGCACCCATAATATCCACTT 59.393 40.000 0.00 0.00 0.00 3.16
215 216 5.155161 TGACTAGCACCCATAATATCCACT 58.845 41.667 0.00 0.00 0.00 4.00
216 217 5.483685 TGACTAGCACCCATAATATCCAC 57.516 43.478 0.00 0.00 0.00 4.02
217 218 5.606749 AGTTGACTAGCACCCATAATATCCA 59.393 40.000 0.00 0.00 0.00 3.41
218 219 6.115448 AGTTGACTAGCACCCATAATATCC 57.885 41.667 0.00 0.00 0.00 2.59
219 220 5.864474 CGAGTTGACTAGCACCCATAATATC 59.136 44.000 0.00 0.00 0.00 1.63
220 221 5.279506 CCGAGTTGACTAGCACCCATAATAT 60.280 44.000 0.00 0.00 0.00 1.28
221 222 4.038763 CCGAGTTGACTAGCACCCATAATA 59.961 45.833 0.00 0.00 0.00 0.98
222 223 3.181465 CCGAGTTGACTAGCACCCATAAT 60.181 47.826 0.00 0.00 0.00 1.28
223 224 2.167693 CCGAGTTGACTAGCACCCATAA 59.832 50.000 0.00 0.00 0.00 1.90
224 225 1.754803 CCGAGTTGACTAGCACCCATA 59.245 52.381 0.00 0.00 0.00 2.74
225 226 0.537188 CCGAGTTGACTAGCACCCAT 59.463 55.000 0.00 0.00 0.00 4.00
226 227 0.541063 TCCGAGTTGACTAGCACCCA 60.541 55.000 0.00 0.00 0.00 4.51
227 228 0.824759 ATCCGAGTTGACTAGCACCC 59.175 55.000 0.00 0.00 0.00 4.61
228 229 4.323553 AATATCCGAGTTGACTAGCACC 57.676 45.455 0.00 0.00 0.00 5.01
229 230 5.348986 TCAAATATCCGAGTTGACTAGCAC 58.651 41.667 0.00 0.00 37.23 4.40
230 231 5.592104 TCAAATATCCGAGTTGACTAGCA 57.408 39.130 0.00 0.00 37.23 3.49
231 232 5.050702 GCTTCAAATATCCGAGTTGACTAGC 60.051 44.000 0.00 0.00 41.63 3.42
232 233 5.463724 GGCTTCAAATATCCGAGTTGACTAG 59.536 44.000 0.00 0.00 41.63 2.57
233 234 5.128827 AGGCTTCAAATATCCGAGTTGACTA 59.871 40.000 0.00 0.00 41.63 2.59
234 235 4.080863 AGGCTTCAAATATCCGAGTTGACT 60.081 41.667 0.00 0.00 41.63 3.41
235 236 4.034510 CAGGCTTCAAATATCCGAGTTGAC 59.965 45.833 0.00 0.00 41.63 3.18
241 242 5.984725 TCTAAACAGGCTTCAAATATCCGA 58.015 37.500 0.00 0.00 0.00 4.55
247 248 5.365314 TGGGTTTTCTAAACAGGCTTCAAAT 59.635 36.000 4.85 0.00 0.00 2.32
250 251 3.904717 TGGGTTTTCTAAACAGGCTTCA 58.095 40.909 4.85 0.00 0.00 3.02
251 252 4.767409 AGATGGGTTTTCTAAACAGGCTTC 59.233 41.667 4.85 0.00 0.00 3.86
255 256 5.316987 ACTCAGATGGGTTTTCTAAACAGG 58.683 41.667 4.85 0.00 0.00 4.00
257 258 4.994852 CGACTCAGATGGGTTTTCTAAACA 59.005 41.667 4.85 0.00 0.00 2.83
268 269 1.328680 CGAAAATGCGACTCAGATGGG 59.671 52.381 0.00 0.00 0.00 4.00
274 275 1.144969 GGACACGAAAATGCGACTCA 58.855 50.000 0.00 0.00 34.83 3.41
280 281 0.589223 TTGACCGGACACGAAAATGC 59.411 50.000 9.46 0.00 44.60 3.56
312 313 7.148440 CCAAACGTGTCTTAAATATTCGGGTAA 60.148 37.037 0.00 0.00 0.00 2.85
318 319 7.136289 TGTCCCAAACGTGTCTTAAATATTC 57.864 36.000 0.00 0.00 0.00 1.75
322 323 4.457949 GGATGTCCCAAACGTGTCTTAAAT 59.542 41.667 0.00 0.00 34.14 1.40
324 325 3.181453 TGGATGTCCCAAACGTGTCTTAA 60.181 43.478 0.00 0.00 43.29 1.85
326 327 1.142060 TGGATGTCCCAAACGTGTCTT 59.858 47.619 0.00 0.00 43.29 3.01
327 328 0.762418 TGGATGTCCCAAACGTGTCT 59.238 50.000 0.00 0.00 43.29 3.41
336 337 2.568956 GCATCTATAGCTGGATGTCCCA 59.431 50.000 19.71 0.00 41.20 4.37
337 338 2.836981 AGCATCTATAGCTGGATGTCCC 59.163 50.000 19.71 9.39 41.20 4.46
338 339 4.122143 GAGCATCTATAGCTGGATGTCC 57.878 50.000 19.71 12.19 43.58 4.02
365 366 5.701750 TGACGCTAAGTTTTAGGTTGCAATA 59.298 36.000 0.59 0.00 0.00 1.90
373 374 5.412526 TGTGTTTGACGCTAAGTTTTAGG 57.587 39.130 0.00 0.00 0.00 2.69
386 387 5.438761 ACTTAAAGGAGCATGTGTTTGAC 57.561 39.130 0.00 0.00 0.00 3.18
396 397 6.435292 AGTTAGGAGAAACTTAAAGGAGCA 57.565 37.500 0.00 0.00 36.26 4.26
399 400 6.426025 GCGAAAGTTAGGAGAAACTTAAAGGA 59.574 38.462 2.67 0.00 46.40 3.36
407 408 3.363673 CCAACGCGAAAGTTAGGAGAAAC 60.364 47.826 15.93 0.00 32.35 2.78
411 412 1.993370 CTCCAACGCGAAAGTTAGGAG 59.007 52.381 15.93 13.65 39.98 3.69
415 416 2.669364 GAGACTCCAACGCGAAAGTTA 58.331 47.619 15.93 0.00 32.35 2.24
428 429 5.412904 AGGATCAAATTGAAAACGAGACTCC 59.587 40.000 0.00 0.00 0.00 3.85
482 484 2.091277 CGCTCAAAAGTGACACGATCTC 59.909 50.000 0.00 0.00 34.83 2.75
538 540 7.985634 GCTCTTTGCCAAAATCGATTTATTA 57.014 32.000 22.99 8.13 35.15 0.98
627 629 2.284112 TGGGTCGGTGAGGGGTAC 60.284 66.667 0.00 0.00 0.00 3.34
647 649 1.205893 GTGCTAGTTGTCCTCTGAGGG 59.794 57.143 23.00 6.68 35.59 4.30
660 662 1.693627 CCTCCGATGGTAGTGCTAGT 58.306 55.000 0.00 0.00 0.00 2.57
670 672 1.372683 CTATGGTGCCCTCCGATGG 59.627 63.158 0.00 0.00 0.00 3.51
684 687 1.873591 GCCTGCGGGTAAATGACTATG 59.126 52.381 14.55 0.00 34.45 2.23
756 759 4.450757 GCATAAAAAGGTTGCACGGAAATT 59.549 37.500 0.00 0.00 36.40 1.82
968 974 3.872354 TCGCAAACAAATCAAGAACTCG 58.128 40.909 0.00 0.00 0.00 4.18
1180 1186 2.620251 CGATAGGCAAGGACCAATGA 57.380 50.000 0.00 0.00 0.00 2.57
1207 1213 4.514441 AGACAAAGCAAACTGATCAGACAG 59.486 41.667 29.27 17.16 42.78 3.51
1219 1225 5.835113 AAAAGAGCACTAGACAAAGCAAA 57.165 34.783 0.00 0.00 0.00 3.68
1498 1504 4.549458 ACATTTCATTTCAAGCAACTCCG 58.451 39.130 0.00 0.00 0.00 4.63
1683 1689 6.109359 ACAAACCTCTAGATATTCAGTGCAC 58.891 40.000 9.40 9.40 0.00 4.57
1796 1802 6.482308 GCTACATAATGGTCGGTCTTATTTGT 59.518 38.462 0.00 0.00 0.00 2.83
2019 2025 6.646267 TGTTTATCCCTATATAATGGACCGC 58.354 40.000 3.39 0.00 0.00 5.68
2100 2107 7.861630 TGTAACTAACAACAGAGAAAATGCTC 58.138 34.615 0.00 0.00 34.29 4.26
2211 2218 7.415989 CCATTGCTGCACTAATATCTTGAGTTT 60.416 37.037 0.00 0.00 0.00 2.66
2339 2346 3.248602 GCTCTTTGTTGAACTGTCGTCAT 59.751 43.478 0.00 0.00 0.00 3.06
2343 2350 1.939934 TGGCTCTTTGTTGAACTGTCG 59.060 47.619 0.00 0.00 0.00 4.35
2474 2481 3.117663 GCAATGTAGAATTAGGGGTCCCA 60.118 47.826 10.98 0.00 38.92 4.37
2603 2618 6.425210 TCACCAGATGATCTAAATACCTGG 57.575 41.667 0.00 0.00 43.77 4.45
2737 2752 4.040339 TGACCAGCTGTTCACTCATTCTTA 59.960 41.667 10.27 0.00 0.00 2.10
2912 2931 4.280819 TCCAGAGGATTTTAATGCAAGGG 58.719 43.478 0.00 0.00 0.00 3.95
2950 2969 2.497138 TCACAATCACTTGCAGTCAGG 58.503 47.619 0.00 0.00 35.69 3.86
3054 3073 0.840722 ACAGGGAAGGGTGGTACTGG 60.841 60.000 0.00 0.00 0.00 4.00
3104 3123 9.880157 GTTCTAATGGTAGTAATGAACCTGTTA 57.120 33.333 0.00 0.00 0.00 2.41
3144 3163 8.817876 ACTTAAGAGTTAAAGACTAAGGCTCAT 58.182 33.333 10.09 0.00 39.19 2.90
3310 3338 1.059913 AATCAGGAATCCTAGGGGCG 58.940 55.000 9.46 0.00 29.64 6.13
3314 3342 4.907875 TGAGGGTAAATCAGGAATCCTAGG 59.092 45.833 0.00 0.82 29.64 3.02
3386 3414 4.402793 ACCCTATACAGTGCAAGTAGTGAG 59.597 45.833 6.45 4.16 0.00 3.51
3392 3420 4.844349 ATTCACCCTATACAGTGCAAGT 57.156 40.909 0.00 0.00 33.90 3.16
3397 3425 5.523916 GTGCTACAATTCACCCTATACAGTG 59.476 44.000 0.00 0.00 35.24 3.66
3499 3535 2.855514 ATTGCAACACACCACCGCC 61.856 57.895 0.00 0.00 0.00 6.13
3550 3586 3.840890 TGTTTGGATTACAATCACGCC 57.159 42.857 4.45 0.00 39.21 5.68
3618 3654 2.431782 GCCAATACCATCAAAGCCACAT 59.568 45.455 0.00 0.00 0.00 3.21
3659 3695 4.549458 CATCAAAGCCACACGATTTCTTT 58.451 39.130 0.00 0.00 0.00 2.52
3662 3698 2.228822 ACCATCAAAGCCACACGATTTC 59.771 45.455 0.00 0.00 0.00 2.17
3668 3704 2.417243 GCCAATACCATCAAAGCCACAC 60.417 50.000 0.00 0.00 0.00 3.82
3672 3708 3.316308 CAGTAGCCAATACCATCAAAGCC 59.684 47.826 0.00 0.00 34.67 4.35
3679 3715 7.878127 GTCAATACATACAGTAGCCAATACCAT 59.122 37.037 0.00 0.00 35.85 3.55
3945 3981 6.543831 AGAATAACACCCAAGAATACAGCATC 59.456 38.462 0.00 0.00 0.00 3.91
4003 4039 4.082125 GTCACCTTTGAGATGGAATGGTT 58.918 43.478 0.00 0.00 30.45 3.67
4037 4073 8.768955 CCTCACATCAATAAATAGCTGAGTAAC 58.231 37.037 0.00 0.00 0.00 2.50
4311 4350 2.264005 ACTTATGCCGACAAACACCA 57.736 45.000 0.00 0.00 0.00 4.17
4387 4429 3.871006 CACTCTAAACAACACACAGCTCA 59.129 43.478 0.00 0.00 0.00 4.26
4607 4649 1.145571 TCAGCAGGGGGTACTTTTGT 58.854 50.000 0.00 0.00 0.00 2.83
4608 4650 2.514458 ATCAGCAGGGGGTACTTTTG 57.486 50.000 0.00 0.00 0.00 2.44
4870 4912 0.322098 TGCCCAGAATACCAACCACG 60.322 55.000 0.00 0.00 0.00 4.94
4876 4918 1.543208 GCGATGATGCCCAGAATACCA 60.543 52.381 0.00 0.00 0.00 3.25
4943 4985 3.732048 TCCTTTCCTGGGAATGTAACC 57.268 47.619 2.69 0.00 33.79 2.85
5117 5159 7.526608 GTGACATAACTTGCAGCTGTTAATAA 58.473 34.615 16.64 2.81 33.21 1.40
5118 5160 6.183360 CGTGACATAACTTGCAGCTGTTAATA 60.183 38.462 16.64 3.37 33.21 0.98
5119 5161 5.390885 CGTGACATAACTTGCAGCTGTTAAT 60.391 40.000 16.64 1.05 33.21 1.40
5161 5203 9.620259 GGTGAGATTAGAATGAATTAAAGGAGT 57.380 33.333 0.00 0.00 0.00 3.85
5162 5204 9.844257 AGGTGAGATTAGAATGAATTAAAGGAG 57.156 33.333 0.00 0.00 0.00 3.69
5179 5221 2.494059 CAACGGTCACAAGGTGAGATT 58.506 47.619 0.00 0.00 43.57 2.40
5195 5241 1.987770 GCAGCAATGAATTCACCAACG 59.012 47.619 11.07 1.02 0.00 4.10
5196 5242 3.308438 AGCAGCAATGAATTCACCAAC 57.692 42.857 11.07 0.87 0.00 3.77
5284 5330 5.902613 TGGCTTAACTACGTACATACTGT 57.097 39.130 0.00 0.00 0.00 3.55
5287 5333 6.976925 ACTGAATGGCTTAACTACGTACATAC 59.023 38.462 0.00 0.00 0.00 2.39
5347 5393 5.426509 TGTATTCAGACTCATCACCCTGATT 59.573 40.000 0.00 0.00 34.28 2.57
5390 5436 8.589338 CATGTTCTATAAGCCTTACTGTAGGAT 58.411 37.037 0.00 0.00 37.50 3.24
5400 5446 5.902431 AGGTCTCTCATGTTCTATAAGCCTT 59.098 40.000 0.00 0.00 0.00 4.35
5551 5597 1.492993 AAACCACCCCCTGCTCTCTC 61.493 60.000 0.00 0.00 0.00 3.20
5586 5632 4.424566 GTACACGGAAGGCGGCGA 62.425 66.667 12.98 0.00 0.00 5.54
5591 5637 1.741770 CTGCCAGTACACGGAAGGC 60.742 63.158 5.57 0.00 45.41 4.35
5592 5638 1.741770 GCTGCCAGTACACGGAAGG 60.742 63.158 10.56 0.00 28.55 3.46
5593 5639 1.005037 TGCTGCCAGTACACGGAAG 60.005 57.895 5.57 5.36 31.45 3.46
5599 5645 0.036105 CCATCAGTGCTGCCAGTACA 60.036 55.000 15.44 0.00 32.98 2.90
5736 5782 1.228583 ACGGTCTGCAGGAGAGACA 60.229 57.895 15.13 0.00 41.50 3.41
5743 5789 2.888863 GGAGAGACGGTCTGCAGG 59.111 66.667 16.72 0.00 43.11 4.85
5765 5811 0.860618 GACGACGACATGTACGAGGC 60.861 60.000 20.62 13.65 34.70 4.70
5793 5851 0.736325 CCACCGCGAGACTAACAAGG 60.736 60.000 8.23 0.00 0.00 3.61
5819 5877 2.074576 GTCGAAGCCTAAAACCTGGAC 58.925 52.381 0.00 0.00 0.00 4.02
5847 5939 6.292008 GCGTTCTTTACATATACGGAGAAACC 60.292 42.308 0.00 0.00 33.17 3.27
5872 5964 5.631172 ACGGAGAAACTGTTATGGCACATG 61.631 45.833 0.00 0.00 37.86 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.