Multiple sequence alignment - TraesCS7A01G300900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G300900 chr7A 100.000 2186 0 0 1 2186 418675880 418673695 0.000000e+00 4037
1 TraesCS7A01G300900 chr7D 90.440 931 33 7 740 1637 373241924 373241017 0.000000e+00 1175
2 TraesCS7A01G300900 chr7D 88.512 531 53 5 1 528 373244353 373243828 8.510000e-179 636
3 TraesCS7A01G300900 chr7D 90.349 487 30 10 1702 2181 373239468 373238992 6.630000e-175 623
4 TraesCS7A01G300900 chr7D 82.550 596 92 10 1 590 104368564 104369153 4.160000e-142 514
5 TraesCS7A01G300900 chr7D 94.037 218 13 0 524 741 373242235 373242018 4.500000e-87 331
6 TraesCS7A01G300900 chr7D 96.923 65 2 0 1625 1689 373240192 373240128 2.290000e-20 110
7 TraesCS7A01G300900 chr2A 84.020 607 84 11 1 600 69300861 69301461 2.430000e-159 571
8 TraesCS7A01G300900 chr3A 83.000 600 94 6 1 595 584028569 584027973 8.880000e-149 536
9 TraesCS7A01G300900 chr3D 83.419 585 85 7 5 584 571043919 571044496 1.150000e-147 532
10 TraesCS7A01G300900 chr2B 82.862 601 93 8 1 593 98291300 98290702 4.130000e-147 531
11 TraesCS7A01G300900 chr2B 82.799 593 88 9 10 597 119803129 119802546 3.220000e-143 518
12 TraesCS7A01G300900 chr7B 82.638 599 96 5 1 594 28489157 28489752 6.910000e-145 523
13 TraesCS7A01G300900 chr4A 82.363 601 98 6 1 596 692086911 692086314 1.160000e-142 516


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G300900 chr7A 418673695 418675880 2185 True 4037 4037 100.0000 1 2186 1 chr7A.!!$R1 2185
1 TraesCS7A01G300900 chr7D 373238992 373244353 5361 True 575 1175 92.0522 1 2181 5 chr7D.!!$R1 2180
2 TraesCS7A01G300900 chr7D 104368564 104369153 589 False 514 514 82.5500 1 590 1 chr7D.!!$F1 589
3 TraesCS7A01G300900 chr2A 69300861 69301461 600 False 571 571 84.0200 1 600 1 chr2A.!!$F1 599
4 TraesCS7A01G300900 chr3A 584027973 584028569 596 True 536 536 83.0000 1 595 1 chr3A.!!$R1 594
5 TraesCS7A01G300900 chr3D 571043919 571044496 577 False 532 532 83.4190 5 584 1 chr3D.!!$F1 579
6 TraesCS7A01G300900 chr2B 98290702 98291300 598 True 531 531 82.8620 1 593 1 chr2B.!!$R1 592
7 TraesCS7A01G300900 chr2B 119802546 119803129 583 True 518 518 82.7990 10 597 1 chr2B.!!$R2 587
8 TraesCS7A01G300900 chr7B 28489157 28489752 595 False 523 523 82.6380 1 594 1 chr7B.!!$F1 593
9 TraesCS7A01G300900 chr4A 692086314 692086911 597 True 516 516 82.3630 1 596 1 chr4A.!!$R1 595

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
904 2608 1.283029 AGCCACCATATGTTCTGCAGT 59.717 47.619 14.67 0.0 0.0 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1709 4296 0.968901 TTTAGCGAGCGAGGAGGGAA 60.969 55.0 0.0 0.0 0.0 3.97 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 27 4.688021 CCTCGGATCTTCAAGACCTTTAG 58.312 47.826 0.00 0.00 0.00 1.85
58 60 6.853872 GTCAACGTCTAGTGATCATCATAGTC 59.146 42.308 0.00 0.00 0.00 2.59
92 95 2.457366 TCTCTCTCGTTCTTTTGGCC 57.543 50.000 0.00 0.00 0.00 5.36
264 271 1.432270 GACGGCATGCACTTCTAGGC 61.432 60.000 21.36 0.00 0.00 3.93
275 282 2.103094 CACTTCTAGGCGATCATTCCCA 59.897 50.000 0.00 0.00 0.00 4.37
277 284 1.342074 TCTAGGCGATCATTCCCAGG 58.658 55.000 0.00 0.00 0.00 4.45
292 299 2.026641 CCCAGGCCAAGTATGTTCATG 58.973 52.381 5.01 0.00 0.00 3.07
304 311 5.513233 AGTATGTTCATGGATCAAGGCTTT 58.487 37.500 0.00 0.00 0.00 3.51
326 336 2.288702 CCATCTTAGATGGGCGACTCAG 60.289 54.545 28.61 4.45 35.58 3.35
443 454 4.111375 TGGAGTATTTCTTCGAGCAGAC 57.889 45.455 0.00 0.00 0.00 3.51
540 2149 8.723942 TTCTTGGATCTTAAGTCTAAATCAGC 57.276 34.615 1.63 0.00 0.00 4.26
545 2154 6.360148 GGATCTTAAGTCTAAATCAGCGTACG 59.640 42.308 11.84 11.84 0.00 3.67
551 2160 5.091431 AGTCTAAATCAGCGTACGTGTAAC 58.909 41.667 17.90 0.00 0.00 2.50
560 2169 2.919229 GCGTACGTGTAACTGTTATGCT 59.081 45.455 17.90 0.00 31.75 3.79
563 2172 5.497597 GCGTACGTGTAACTGTTATGCTTAC 60.498 44.000 17.90 7.07 31.75 2.34
576 2185 7.119262 ACTGTTATGCTTACGAATAAAGTTGCT 59.881 33.333 0.00 0.00 0.00 3.91
635 2244 2.542907 CGCGCACCAACTTTGACCT 61.543 57.895 8.75 0.00 0.00 3.85
659 2268 2.095461 GCCTTGGGGAAGAAGTTGATC 58.905 52.381 0.00 0.00 33.58 2.92
694 2303 3.023832 AGTAACCACAACTTGCTTGCTT 58.976 40.909 0.00 0.00 32.41 3.91
758 2462 4.232909 TCCTAGCTAGCTACTACTCCAGA 58.767 47.826 20.67 4.96 0.00 3.86
857 2561 4.886579 ACTGAATTTGACCAAGCCAAATC 58.113 39.130 0.00 0.00 41.71 2.17
903 2607 2.048444 AGCCACCATATGTTCTGCAG 57.952 50.000 7.63 7.63 0.00 4.41
904 2608 1.283029 AGCCACCATATGTTCTGCAGT 59.717 47.619 14.67 0.00 0.00 4.40
935 2639 4.700213 GCTCACTCCAAACCATAGCTTAAA 59.300 41.667 0.00 0.00 0.00 1.52
943 2647 5.010617 CCAAACCATAGCTTAAACCACAACT 59.989 40.000 0.00 0.00 0.00 3.16
955 2659 7.575414 TTAAACCACAACTAGCTGATCAAAA 57.425 32.000 0.00 0.00 0.00 2.44
956 2660 5.695851 AACCACAACTAGCTGATCAAAAG 57.304 39.130 0.00 0.00 0.00 2.27
957 2661 4.973168 ACCACAACTAGCTGATCAAAAGA 58.027 39.130 0.00 0.00 0.00 2.52
958 2662 5.376625 ACCACAACTAGCTGATCAAAAGAA 58.623 37.500 0.00 0.00 0.00 2.52
959 2663 6.006449 ACCACAACTAGCTGATCAAAAGAAT 58.994 36.000 0.00 0.00 0.00 2.40
960 2664 7.168219 ACCACAACTAGCTGATCAAAAGAATA 58.832 34.615 0.00 0.00 0.00 1.75
961 2665 7.335422 ACCACAACTAGCTGATCAAAAGAATAG 59.665 37.037 0.00 0.00 0.00 1.73
962 2666 7.185453 CACAACTAGCTGATCAAAAGAATAGC 58.815 38.462 0.00 0.00 0.00 2.97
963 2667 7.065563 CACAACTAGCTGATCAAAAGAATAGCT 59.934 37.037 0.00 6.98 43.27 3.32
964 2668 7.065563 ACAACTAGCTGATCAAAAGAATAGCTG 59.934 37.037 10.99 5.21 41.20 4.24
965 2669 6.648192 ACTAGCTGATCAAAAGAATAGCTGT 58.352 36.000 10.99 5.70 41.20 4.40
966 2670 7.786030 ACTAGCTGATCAAAAGAATAGCTGTA 58.214 34.615 10.99 0.00 41.20 2.74
967 2671 6.917217 AGCTGATCAAAAGAATAGCTGTAC 57.083 37.500 0.00 0.00 39.77 2.90
968 2672 6.409704 AGCTGATCAAAAGAATAGCTGTACA 58.590 36.000 0.00 0.00 39.77 2.90
969 2673 7.052873 AGCTGATCAAAAGAATAGCTGTACAT 58.947 34.615 0.00 0.00 39.77 2.29
970 2674 7.555554 AGCTGATCAAAAGAATAGCTGTACATT 59.444 33.333 0.00 0.00 39.77 2.71
971 2675 8.186821 GCTGATCAAAAGAATAGCTGTACATTT 58.813 33.333 0.00 0.00 0.00 2.32
972 2676 9.713740 CTGATCAAAAGAATAGCTGTACATTTC 57.286 33.333 0.00 0.00 0.00 2.17
973 2677 8.390354 TGATCAAAAGAATAGCTGTACATTTCG 58.610 33.333 0.00 0.00 0.00 3.46
974 2678 7.899178 TCAAAAGAATAGCTGTACATTTCGA 57.101 32.000 0.00 0.00 0.00 3.71
1015 2719 1.737735 GCCATGGTTTGCTTTCGGC 60.738 57.895 14.67 0.00 42.22 5.54
1068 2772 1.517913 GTACGCGGCCCAGAACTAC 60.518 63.158 12.47 0.00 0.00 2.73
1136 2840 1.709147 CGCAGGAAGCCAGAAATCGG 61.709 60.000 0.00 0.00 41.38 4.18
1137 2841 0.678048 GCAGGAAGCCAGAAATCGGT 60.678 55.000 0.00 0.00 37.23 4.69
1168 2878 3.772025 GAGGAAGAAGAAGGTGGAGATCA 59.228 47.826 0.00 0.00 0.00 2.92
1174 2884 2.248248 AGAAGGTGGAGATCAACGACA 58.752 47.619 0.00 0.00 38.34 4.35
1198 2908 5.172934 ACGAGGAGTAGATCGATCATACTC 58.827 45.833 31.48 31.48 43.00 2.59
1205 2915 6.908825 AGTAGATCGATCATACTCTTCAAGC 58.091 40.000 26.47 0.00 0.00 4.01
1244 2954 6.183360 ACCATTATATATCGGGTGATCAGTCG 60.183 42.308 10.37 10.37 35.99 4.18
1251 2961 1.136305 CGGGTGATCAGTCGGTACAAT 59.864 52.381 0.00 0.00 0.00 2.71
1266 2976 7.336931 AGTCGGTACAATTATGAAGCAAAATCT 59.663 33.333 0.00 0.00 0.00 2.40
1296 3006 6.455647 CATGTGAAGTTTGTAGTAGGAGTCA 58.544 40.000 0.00 0.00 0.00 3.41
1324 3034 8.753133 TGGAGTAGTGATGTAATATGATGATCC 58.247 37.037 0.00 0.00 0.00 3.36
1513 3249 2.757314 TGAATCTGCGAGATCACACTCT 59.243 45.455 0.00 0.00 32.89 3.24
1529 3265 5.758296 TCACACTCTGTTGCCTTAAAGTAAG 59.242 40.000 0.00 0.00 35.56 2.34
1615 3351 3.885297 TGGAAAACTCTGGCAGAAAGAAG 59.115 43.478 19.29 8.88 0.00 2.85
1618 3354 3.415457 AACTCTGGCAGAAAGAAGAGG 57.585 47.619 19.29 6.62 40.41 3.69
1622 3358 2.072298 CTGGCAGAAAGAAGAGGAACG 58.928 52.381 9.42 0.00 0.00 3.95
1649 4220 2.091610 TCTTTTGGATGAACCCACCACA 60.092 45.455 0.00 0.00 35.62 4.17
1709 4296 1.607251 GCGCGGCCCATTAAGTATAGT 60.607 52.381 8.83 0.00 0.00 2.12
1762 4980 3.791887 CGTTCACTAGATTAACTCGCCTG 59.208 47.826 0.00 0.00 0.00 4.85
1823 5044 1.074248 GGAAAAAGACCCGCCTCCA 59.926 57.895 0.00 0.00 0.00 3.86
1824 5045 0.960861 GGAAAAAGACCCGCCTCCAG 60.961 60.000 0.00 0.00 0.00 3.86
1898 5119 9.844257 ATTCATTAAAATGTTTGAGGGTTTTGA 57.156 25.926 2.80 0.00 37.65 2.69
1906 5127 5.164954 TGTTTGAGGGTTTTGAAAAGTTCG 58.835 37.500 0.00 0.00 0.00 3.95
2101 5326 7.317842 TGGTTTTGTATACGAGTTCACAAAA 57.682 32.000 16.66 16.66 44.34 2.44
2112 5337 7.800015 ACGAGTTCACAAAATTTAAAAACGT 57.200 28.000 0.00 0.00 0.00 3.99
2130 5355 7.914537 AAAACGTTTGAGCATCTAGAAAAAG 57.085 32.000 15.46 0.00 34.92 2.27
2133 5358 7.259290 ACGTTTGAGCATCTAGAAAAAGAAA 57.741 32.000 0.00 0.00 34.92 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.618690 AAAGGTCTTGAAGATCCGAGG 57.381 47.619 1.04 0.00 0.00 4.63
25 27 2.978489 CACTAGACGTTGACGAAGAACC 59.022 50.000 10.87 0.00 43.02 3.62
74 76 1.071605 CGGCCAAAAGAACGAGAGAG 58.928 55.000 2.24 0.00 0.00 3.20
92 95 1.478510 ACTCTCTAACCTCATGGCACG 59.521 52.381 0.00 0.00 36.63 5.34
177 184 9.801873 CCTTCAGAAAGAATCAAACTAACAAAA 57.198 29.630 0.00 0.00 35.25 2.44
178 185 8.966868 ACCTTCAGAAAGAATCAAACTAACAAA 58.033 29.630 0.00 0.00 35.25 2.83
179 186 8.519799 ACCTTCAGAAAGAATCAAACTAACAA 57.480 30.769 0.00 0.00 35.25 2.83
197 204 6.860023 GTGTTGATGAAAGATTTGACCTTCAG 59.140 38.462 0.00 0.00 0.00 3.02
264 271 0.107017 ACTTGGCCTGGGAATGATCG 60.107 55.000 3.32 0.00 0.00 3.69
275 282 3.202818 TGATCCATGAACATACTTGGCCT 59.797 43.478 3.32 0.00 35.79 5.19
277 284 4.037208 CCTTGATCCATGAACATACTTGGC 59.963 45.833 0.00 0.00 35.79 4.52
292 299 5.041191 TCTAAGATGGAAAGCCTTGATCC 57.959 43.478 0.00 0.00 34.31 3.36
304 311 1.964223 GAGTCGCCCATCTAAGATGGA 59.036 52.381 17.78 0.00 41.64 3.41
364 374 4.138487 ACGAGGTTCTCACTTTTTCACT 57.862 40.909 0.00 0.00 0.00 3.41
377 387 3.655276 TGGACTTGAGTAACGAGGTTC 57.345 47.619 0.00 0.00 34.46 3.62
443 454 4.908736 ACATCTTTTTCGCGGTATCAATG 58.091 39.130 6.13 7.04 0.00 2.82
528 540 3.844577 ACACGTACGCTGATTTAGACT 57.155 42.857 16.72 0.00 0.00 3.24
540 2149 5.274959 CGTAAGCATAACAGTTACACGTACG 60.275 44.000 15.01 15.01 31.29 3.67
545 2154 9.685005 CTTTATTCGTAAGCATAACAGTTACAC 57.315 33.333 0.00 0.00 35.23 2.90
551 2160 7.426456 CAGCAACTTTATTCGTAAGCATAACAG 59.574 37.037 0.00 0.00 35.23 3.16
560 2169 6.261381 AGAAACACCAGCAACTTTATTCGTAA 59.739 34.615 0.00 0.00 0.00 3.18
563 2172 5.108385 AGAAACACCAGCAACTTTATTCG 57.892 39.130 0.00 0.00 0.00 3.34
576 2185 9.847224 ATCTAGTCTTTTCTTTTAGAAACACCA 57.153 29.630 1.55 0.00 43.25 4.17
635 2244 0.476771 ACTTCTTCCCCAAGGCGAAA 59.523 50.000 0.00 0.00 0.00 3.46
659 2268 2.292016 TGGTTACTTGACATGGTTTGCG 59.708 45.455 0.00 0.00 0.00 4.85
694 2303 1.002403 TTGGAGGGCCGACAGGATA 59.998 57.895 0.00 0.00 41.02 2.59
737 2346 4.627284 TCTGGAGTAGTAGCTAGCTAGG 57.373 50.000 24.78 7.83 0.00 3.02
745 2449 8.721019 ACGACTATATAATCTGGAGTAGTAGC 57.279 38.462 0.00 0.00 0.00 3.58
782 2486 5.378230 AGGAATAATCTGAAGGCATGTGA 57.622 39.130 0.00 0.00 0.00 3.58
903 2607 3.935828 GGTTTGGAGTGAGCTTGAGATAC 59.064 47.826 0.00 0.00 0.00 2.24
904 2608 3.582647 TGGTTTGGAGTGAGCTTGAGATA 59.417 43.478 0.00 0.00 0.00 1.98
935 2639 4.973168 TCTTTTGATCAGCTAGTTGTGGT 58.027 39.130 6.47 0.00 0.00 4.16
943 2647 7.555965 TGTACAGCTATTCTTTTGATCAGCTA 58.444 34.615 0.00 0.00 41.24 3.32
955 2659 7.147880 ACCTACTTCGAAATGTACAGCTATTCT 60.148 37.037 0.33 0.00 0.00 2.40
956 2660 6.979238 ACCTACTTCGAAATGTACAGCTATTC 59.021 38.462 0.33 2.91 0.00 1.75
957 2661 6.875076 ACCTACTTCGAAATGTACAGCTATT 58.125 36.000 0.33 0.00 0.00 1.73
958 2662 6.466885 ACCTACTTCGAAATGTACAGCTAT 57.533 37.500 0.33 0.00 0.00 2.97
959 2663 5.909621 ACCTACTTCGAAATGTACAGCTA 57.090 39.130 0.33 0.00 0.00 3.32
960 2664 4.803098 ACCTACTTCGAAATGTACAGCT 57.197 40.909 0.33 0.00 0.00 4.24
961 2665 6.098017 AGTAACCTACTTCGAAATGTACAGC 58.902 40.000 0.33 0.00 34.86 4.40
962 2666 7.485277 CAGAGTAACCTACTTCGAAATGTACAG 59.515 40.741 0.33 0.00 39.59 2.74
963 2667 7.310664 CAGAGTAACCTACTTCGAAATGTACA 58.689 38.462 0.00 0.00 39.59 2.90
964 2668 6.253083 GCAGAGTAACCTACTTCGAAATGTAC 59.747 42.308 0.00 0.00 39.59 2.90
965 2669 6.152323 AGCAGAGTAACCTACTTCGAAATGTA 59.848 38.462 0.00 0.00 39.59 2.29
966 2670 5.047235 AGCAGAGTAACCTACTTCGAAATGT 60.047 40.000 0.00 0.00 39.59 2.71
967 2671 5.411781 AGCAGAGTAACCTACTTCGAAATG 58.588 41.667 0.00 0.00 39.59 2.32
968 2672 5.419471 AGAGCAGAGTAACCTACTTCGAAAT 59.581 40.000 0.00 0.00 39.59 2.17
969 2673 4.765856 AGAGCAGAGTAACCTACTTCGAAA 59.234 41.667 0.00 0.00 39.59 3.46
970 2674 4.333690 AGAGCAGAGTAACCTACTTCGAA 58.666 43.478 0.00 0.00 39.59 3.71
971 2675 3.952931 AGAGCAGAGTAACCTACTTCGA 58.047 45.455 0.00 0.00 39.59 3.71
972 2676 4.260866 GCTAGAGCAGAGTAACCTACTTCG 60.261 50.000 0.00 0.00 39.06 3.79
973 2677 4.885325 AGCTAGAGCAGAGTAACCTACTTC 59.115 45.833 4.01 0.00 45.16 3.01
974 2678 4.642885 CAGCTAGAGCAGAGTAACCTACTT 59.357 45.833 4.01 0.00 45.16 2.24
1015 2719 1.617947 CCGAGGAGGAAGGGGAACAG 61.618 65.000 0.00 0.00 45.00 3.16
1068 2772 1.521681 GCGGAGATTCGGGACCTTG 60.522 63.158 0.00 0.00 0.00 3.61
1099 2803 0.237761 CGGTATTCCTCCTCGTAGCG 59.762 60.000 0.00 0.00 0.00 4.26
1104 2808 1.107538 TCCTGCGGTATTCCTCCTCG 61.108 60.000 0.00 0.00 0.00 4.63
1129 2833 2.513897 CCCCTCGCCACCGATTTC 60.514 66.667 0.00 0.00 43.47 2.17
1136 2840 2.245438 CTTCTTCCTCCCCTCGCCAC 62.245 65.000 0.00 0.00 0.00 5.01
1137 2841 1.990060 CTTCTTCCTCCCCTCGCCA 60.990 63.158 0.00 0.00 0.00 5.69
1168 2878 2.095532 CGATCTACTCCTCGTTGTCGTT 59.904 50.000 0.00 0.00 38.33 3.85
1174 2884 5.553123 AGTATGATCGATCTACTCCTCGTT 58.447 41.667 25.02 6.08 36.33 3.85
1198 2908 1.028868 GGCCTACCAGCAGCTTGAAG 61.029 60.000 0.00 0.00 35.26 3.02
1205 2915 3.390521 TGGTCGGCCTACCAGCAG 61.391 66.667 24.71 0.00 44.68 4.24
1251 2961 7.703197 CACATGCATACAGATTTTGCTTCATAA 59.297 33.333 0.00 0.00 37.28 1.90
1266 2976 6.593770 CCTACTACAAACTTCACATGCATACA 59.406 38.462 0.00 0.00 0.00 2.29
1296 3006 8.712228 TCATCATATTACATCACTACTCCAGT 57.288 34.615 0.00 0.00 38.32 4.00
1324 3034 7.246311 ACGTTATATAAATCGACCGGTCTATG 58.754 38.462 30.92 16.68 0.00 2.23
1481 3217 7.864882 TGATCTCGCAGATTCACTTCTAAATAG 59.135 37.037 0.00 0.00 34.53 1.73
1494 3230 2.495270 ACAGAGTGTGATCTCGCAGATT 59.505 45.455 10.68 0.00 34.53 2.40
1513 3249 9.054922 ACGTTAATTACTTACTTTAAGGCAACA 57.945 29.630 0.00 0.00 40.08 3.33
1600 3336 3.333804 GTTCCTCTTCTTTCTGCCAGAG 58.666 50.000 0.00 0.00 33.77 3.35
1618 3354 5.685954 GGTTCATCCAAAAGAACTTTCGTTC 59.314 40.000 0.00 0.00 42.76 3.95
1622 3358 5.289595 GTGGGTTCATCCAAAAGAACTTTC 58.710 41.667 0.00 0.00 42.76 2.62
1635 4206 1.880027 GTTCACTGTGGTGGGTTCATC 59.120 52.381 8.11 0.00 43.17 2.92
1709 4296 0.968901 TTTAGCGAGCGAGGAGGGAA 60.969 55.000 0.00 0.00 0.00 3.97
1736 4954 6.039047 AGGCGAGTTAATCTAGTGAACGAATA 59.961 38.462 0.00 0.00 0.00 1.75
1785 5006 1.129251 CTGAACCAGCAGCATAACACG 59.871 52.381 0.00 0.00 0.00 4.49
1793 5014 1.956477 TCTTTTTCCTGAACCAGCAGC 59.044 47.619 0.00 0.00 34.56 5.25
1890 5111 7.142680 TCATATTCACGAACTTTTCAAAACCC 58.857 34.615 0.00 0.00 0.00 4.11
2016 5241 9.545105 TGCTGATTTATTTGTCAAAATTGAAGT 57.455 25.926 1.31 0.00 39.21 3.01
2075 5300 7.499321 TTGTGAACTCGTATACAAAACCAAT 57.501 32.000 3.32 0.00 30.81 3.16
2101 5326 9.959749 TTTCTAGATGCTCAAACGTTTTTAAAT 57.040 25.926 11.66 3.33 0.00 1.40
2109 5334 6.861065 TTCTTTTTCTAGATGCTCAAACGT 57.139 33.333 0.00 0.00 0.00 3.99


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.