Multiple sequence alignment - TraesCS7A01G300800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G300800 chr7A 100.000 3867 0 0 1 3867 418115921 418112055 0.000000e+00 7142
1 TraesCS7A01G300800 chr7D 97.186 3269 65 12 171 3425 372906291 372903036 0.000000e+00 5502
2 TraesCS7A01G300800 chr7D 90.667 225 13 4 3192 3415 36515692 36515909 3.780000e-75 292
3 TraesCS7A01G300800 chr7B 95.108 3291 105 21 171 3425 368157054 368153784 0.000000e+00 5134
4 TraesCS7A01G300800 chr6D 88.129 278 22 7 3529 3798 140036379 140036105 1.730000e-83 320
5 TraesCS7A01G300800 chr3D 84.078 358 25 15 3537 3865 164996488 164996134 2.240000e-82 316
6 TraesCS7A01G300800 chr3D 87.050 278 27 5 3529 3798 338300705 338300981 4.850000e-79 305
7 TraesCS7A01G300800 chr3D 85.612 278 30 7 3529 3798 602795551 602795276 2.270000e-72 283
8 TraesCS7A01G300800 chr2D 86.861 274 26 8 3529 3796 560956217 560955948 8.120000e-77 298
9 TraesCS7A01G300800 chr2D 86.463 229 21 7 3577 3798 651503578 651503803 3.860000e-60 243
10 TraesCS7A01G300800 chr6A 90.667 225 13 4 3192 3415 21160575 21160792 3.780000e-75 292
11 TraesCS7A01G300800 chr3A 90.667 225 13 4 3192 3415 159346166 159345949 3.780000e-75 292
12 TraesCS7A01G300800 chr3A 91.026 78 7 0 3429 3506 144148866 144148789 5.280000e-19 106
13 TraesCS7A01G300800 chr5A 89.474 228 13 8 3192 3415 298259226 298259446 1.060000e-70 278
14 TraesCS7A01G300800 chr1D 88.210 229 18 5 3577 3798 432643079 432642853 8.240000e-67 265
15 TraesCS7A01G300800 chr1D 81.048 248 34 8 3537 3776 411045134 411045376 6.600000e-43 185
16 TraesCS7A01G300800 chr2A 84.015 269 34 5 3537 3798 752819838 752819572 2.310000e-62 250
17 TraesCS7A01G300800 chr3B 82.642 265 35 8 3529 3785 810955453 810955714 1.400000e-54 224


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G300800 chr7A 418112055 418115921 3866 True 7142 7142 100.000 1 3867 1 chr7A.!!$R1 3866
1 TraesCS7A01G300800 chr7D 372903036 372906291 3255 True 5502 5502 97.186 171 3425 1 chr7D.!!$R1 3254
2 TraesCS7A01G300800 chr7B 368153784 368157054 3270 True 5134 5134 95.108 171 3425 1 chr7B.!!$R1 3254

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
45 46 0.186873 CCCTTCAGGATTCATGGGGG 59.813 60.0 13.01 13.01 38.24 5.40 F
1279 1311 0.107459 GTGAGCTTGATCCCCAGACC 60.107 60.0 0.00 0.00 0.00 3.85 F
2106 2138 1.028330 TTCGGTAGCGACTCGGATGT 61.028 55.0 17.92 0.00 0.00 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1922 1954 0.110104 GGAATCCTCCATGCCTCCAG 59.890 60.0 0.00 0.00 41.96 3.86 R
2447 2479 0.533531 CAAGGTCAGCTGACACTGCA 60.534 55.0 39.71 7.07 46.47 4.41 R
3504 3549 0.030235 AAAACGTCCGAAAAGCCAGC 59.970 50.0 0.00 0.00 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.073201 GCAGGGAGATGGGAAGGA 57.927 61.111 0.00 0.00 0.00 3.36
18 19 2.549580 GCAGGGAGATGGGAAGGAT 58.450 57.895 0.00 0.00 0.00 3.24
19 20 0.849417 GCAGGGAGATGGGAAGGATT 59.151 55.000 0.00 0.00 0.00 3.01
20 21 1.216427 GCAGGGAGATGGGAAGGATTT 59.784 52.381 0.00 0.00 0.00 2.17
21 22 2.358615 GCAGGGAGATGGGAAGGATTTT 60.359 50.000 0.00 0.00 0.00 1.82
22 23 3.883318 GCAGGGAGATGGGAAGGATTTTT 60.883 47.826 0.00 0.00 0.00 1.94
23 24 4.631169 GCAGGGAGATGGGAAGGATTTTTA 60.631 45.833 0.00 0.00 0.00 1.52
24 25 5.136105 CAGGGAGATGGGAAGGATTTTTAG 58.864 45.833 0.00 0.00 0.00 1.85
25 26 4.796265 AGGGAGATGGGAAGGATTTTTAGT 59.204 41.667 0.00 0.00 0.00 2.24
26 27 5.103898 AGGGAGATGGGAAGGATTTTTAGTC 60.104 44.000 0.00 0.00 0.00 2.59
27 28 5.133941 GGAGATGGGAAGGATTTTTAGTCC 58.866 45.833 0.00 0.00 35.94 3.85
29 30 4.796265 AGATGGGAAGGATTTTTAGTCCCT 59.204 41.667 8.44 0.00 46.97 4.20
30 31 5.256389 AGATGGGAAGGATTTTTAGTCCCTT 59.744 40.000 8.44 2.13 46.97 3.95
35 36 5.860648 AAGGATTTTTAGTCCCTTCAGGA 57.139 39.130 0.00 0.00 44.91 3.86
44 45 1.225373 TCCCTTCAGGATTCATGGGG 58.775 55.000 6.37 6.37 40.93 4.96
45 46 0.186873 CCCTTCAGGATTCATGGGGG 59.813 60.000 13.01 13.01 38.24 5.40
59 60 4.571243 GGGGGAGAGAGAGAGACG 57.429 66.667 0.00 0.00 0.00 4.18
60 61 1.916738 GGGGGAGAGAGAGAGACGA 59.083 63.158 0.00 0.00 0.00 4.20
61 62 0.476771 GGGGGAGAGAGAGAGACGAT 59.523 60.000 0.00 0.00 0.00 3.73
62 63 1.700739 GGGGGAGAGAGAGAGACGATA 59.299 57.143 0.00 0.00 0.00 2.92
63 64 2.106857 GGGGGAGAGAGAGAGACGATAA 59.893 54.545 0.00 0.00 0.00 1.75
64 65 3.245122 GGGGGAGAGAGAGAGACGATAAT 60.245 52.174 0.00 0.00 0.00 1.28
65 66 4.007659 GGGGAGAGAGAGAGACGATAATC 58.992 52.174 0.00 0.00 0.00 1.75
66 67 4.505918 GGGGAGAGAGAGAGACGATAATCA 60.506 50.000 0.00 0.00 0.00 2.57
67 68 4.695455 GGGAGAGAGAGAGACGATAATCAG 59.305 50.000 0.00 0.00 0.00 2.90
68 69 5.305585 GGAGAGAGAGAGACGATAATCAGT 58.694 45.833 0.00 0.00 0.00 3.41
69 70 5.179368 GGAGAGAGAGAGACGATAATCAGTG 59.821 48.000 0.00 0.00 0.00 3.66
70 71 5.063204 AGAGAGAGAGACGATAATCAGTGG 58.937 45.833 0.00 0.00 0.00 4.00
71 72 3.568007 AGAGAGAGACGATAATCAGTGGC 59.432 47.826 0.00 0.00 0.00 5.01
72 73 2.292016 AGAGAGACGATAATCAGTGGCG 59.708 50.000 0.00 0.00 0.00 5.69
73 74 1.338337 AGAGACGATAATCAGTGGCGG 59.662 52.381 0.00 0.00 0.00 6.13
74 75 1.337071 GAGACGATAATCAGTGGCGGA 59.663 52.381 0.00 0.00 0.00 5.54
75 76 1.338337 AGACGATAATCAGTGGCGGAG 59.662 52.381 0.00 0.00 0.00 4.63
88 89 2.203209 CGGAGCTATGTTGGGGCC 60.203 66.667 0.00 0.00 0.00 5.80
89 90 3.006677 GGAGCTATGTTGGGGCCA 58.993 61.111 4.39 0.00 0.00 5.36
90 91 1.152881 GGAGCTATGTTGGGGCCAG 60.153 63.158 4.39 0.00 0.00 4.85
91 92 1.152881 GAGCTATGTTGGGGCCAGG 60.153 63.158 4.39 0.00 0.00 4.45
92 93 2.123726 GCTATGTTGGGGCCAGGG 60.124 66.667 4.39 0.00 0.00 4.45
93 94 2.603008 CTATGTTGGGGCCAGGGG 59.397 66.667 4.39 0.00 0.00 4.79
94 95 3.026847 TATGTTGGGGCCAGGGGG 61.027 66.667 4.39 0.00 37.18 5.40
122 123 3.983420 CCCCCAGCCTTGGCTCAA 61.983 66.667 11.72 0.00 43.58 3.02
123 124 2.361771 CCCCAGCCTTGGCTCAAT 59.638 61.111 11.72 0.00 43.58 2.57
124 125 1.305549 CCCCAGCCTTGGCTCAATT 60.306 57.895 11.72 0.00 43.58 2.32
125 126 0.906282 CCCCAGCCTTGGCTCAATTT 60.906 55.000 11.72 0.00 43.58 1.82
126 127 0.533951 CCCAGCCTTGGCTCAATTTC 59.466 55.000 11.72 0.00 43.58 2.17
127 128 1.553706 CCAGCCTTGGCTCAATTTCT 58.446 50.000 11.72 0.00 37.73 2.52
128 129 1.203994 CCAGCCTTGGCTCAATTTCTG 59.796 52.381 11.72 0.00 37.73 3.02
129 130 2.165167 CAGCCTTGGCTCAATTTCTGA 58.835 47.619 11.72 0.00 0.00 3.27
130 131 2.559668 CAGCCTTGGCTCAATTTCTGAA 59.440 45.455 11.72 0.00 32.17 3.02
131 132 2.824341 AGCCTTGGCTCAATTTCTGAAG 59.176 45.455 8.56 0.00 32.17 3.02
132 133 2.821969 GCCTTGGCTCAATTTCTGAAGA 59.178 45.455 4.11 0.00 32.17 2.87
133 134 3.256631 GCCTTGGCTCAATTTCTGAAGAA 59.743 43.478 4.11 0.00 32.17 2.52
134 135 4.262164 GCCTTGGCTCAATTTCTGAAGAAA 60.262 41.667 7.89 7.89 46.60 2.52
165 166 2.946703 GACTTTCGTCTAGCTCCGC 58.053 57.895 0.00 0.00 37.19 5.54
166 167 0.525882 GACTTTCGTCTAGCTCCGCC 60.526 60.000 0.00 0.00 37.19 6.13
167 168 1.248785 ACTTTCGTCTAGCTCCGCCA 61.249 55.000 0.00 0.00 0.00 5.69
168 169 0.802607 CTTTCGTCTAGCTCCGCCAC 60.803 60.000 0.00 0.00 0.00 5.01
169 170 1.248785 TTTCGTCTAGCTCCGCCACT 61.249 55.000 0.00 0.00 0.00 4.00
295 296 8.827177 TGGATTTCGAATATCCAATACTGTAC 57.173 34.615 26.22 8.23 46.46 2.90
296 297 8.647796 TGGATTTCGAATATCCAATACTGTACT 58.352 33.333 26.22 0.00 46.46 2.73
362 363 2.775911 TTCAGGTCAGATCAGCCTTG 57.224 50.000 0.00 0.00 0.00 3.61
418 422 5.395324 CCTGCCCCGATTAATAGTATGGTAG 60.395 48.000 0.00 0.00 0.00 3.18
419 423 5.335261 TGCCCCGATTAATAGTATGGTAGA 58.665 41.667 0.00 0.00 0.00 2.59
422 426 7.620491 TGCCCCGATTAATAGTATGGTAGATAA 59.380 37.037 0.00 0.00 0.00 1.75
532 540 7.595502 GGTGTTGGAGATAAGAATAGTGTATCG 59.404 40.741 0.00 0.00 30.95 2.92
546 554 5.056894 AGTGTATCGTCAGTCCTTTGTAC 57.943 43.478 0.00 0.00 0.00 2.90
621 652 0.678048 AGAGCAAGATGGGTTTCCGC 60.678 55.000 0.00 0.00 35.24 5.54
832 863 5.916318 TGAATTATTGGGTGCATCCATTTC 58.084 37.500 22.02 19.29 36.58 2.17
864 895 5.303747 TGCATGGTAACCAAAATTCTACG 57.696 39.130 0.00 0.00 36.95 3.51
979 1010 6.582636 TCAATTGTAACATAGAATCGCTCCT 58.417 36.000 5.13 0.00 0.00 3.69
983 1014 8.958119 ATTGTAACATAGAATCGCTCCTTTTA 57.042 30.769 0.00 0.00 0.00 1.52
1107 1139 0.820226 TCGAGAGTTCTCATGGCCAG 59.180 55.000 13.05 3.43 43.00 4.85
1187 1219 4.466726 AGGCTCTAAGAAATTACCAGACGT 59.533 41.667 0.00 0.00 0.00 4.34
1279 1311 0.107459 GTGAGCTTGATCCCCAGACC 60.107 60.000 0.00 0.00 0.00 3.85
1352 1384 2.486592 GGTTGGTCTCCATTTAACACCG 59.513 50.000 0.00 0.00 31.53 4.94
1922 1954 6.547510 AGTGAAACATAAGGCAATAGGATTCC 59.452 38.462 0.00 0.00 41.43 3.01
1982 2014 1.277557 TCTGCCTCTTCTTCTCCAAGC 59.722 52.381 0.00 0.00 0.00 4.01
2017 2049 3.009143 CCTTCCTGTACTGGCTACCTTTT 59.991 47.826 13.72 0.00 0.00 2.27
2106 2138 1.028330 TTCGGTAGCGACTCGGATGT 61.028 55.000 17.92 0.00 0.00 3.06
2148 2180 8.301002 TGTTATAACCTGAACCATGCTTTAAAC 58.699 33.333 13.01 0.00 0.00 2.01
2165 2197 7.882791 TGCTTTAAACTGTTCATTCCTGATAGA 59.117 33.333 0.00 0.00 0.00 1.98
2276 2308 1.613630 AGGAGTCCTTGCCGGTCAT 60.614 57.895 5.62 0.00 0.00 3.06
2303 2335 1.594862 GATCGCTTAAATGCACGAGCT 59.405 47.619 6.36 0.00 42.74 4.09
2447 2479 2.846206 TCCTTATGCCCTGATCACAACT 59.154 45.455 0.00 0.00 0.00 3.16
2838 2870 3.512680 CCTTCTTGGTCGACATCAGTAC 58.487 50.000 18.91 0.00 0.00 2.73
2966 2998 4.392940 AGACAAGATGGAGGTGAAAACAG 58.607 43.478 0.00 0.00 0.00 3.16
3002 3034 9.342308 CTGAGCCCACATATAATTTCTTTTCTA 57.658 33.333 0.00 0.00 0.00 2.10
3077 3109 7.263100 TGTATCACTGCATATTTAAGCTTGG 57.737 36.000 9.86 0.00 0.00 3.61
3099 3131 2.813754 ACGCATGTGATTGCTGTTTAGT 59.186 40.909 14.43 0.00 40.54 2.24
3137 3169 5.661503 TCTCCCTCTACAAGATGAGATCT 57.338 43.478 0.00 0.00 42.61 2.75
3428 3473 8.731275 TGATGTTTCATTGTTATATCTTCGGT 57.269 30.769 0.00 0.00 0.00 4.69
3429 3474 9.173021 TGATGTTTCATTGTTATATCTTCGGTT 57.827 29.630 0.00 0.00 0.00 4.44
3430 3475 9.651718 GATGTTTCATTGTTATATCTTCGGTTC 57.348 33.333 0.00 0.00 0.00 3.62
3431 3476 8.554835 TGTTTCATTGTTATATCTTCGGTTCA 57.445 30.769 0.00 0.00 0.00 3.18
3432 3477 8.664798 TGTTTCATTGTTATATCTTCGGTTCAG 58.335 33.333 0.00 0.00 0.00 3.02
3433 3478 8.665685 GTTTCATTGTTATATCTTCGGTTCAGT 58.334 33.333 0.00 0.00 0.00 3.41
3434 3479 8.420374 TTCATTGTTATATCTTCGGTTCAGTC 57.580 34.615 0.00 0.00 0.00 3.51
3435 3480 7.552459 TCATTGTTATATCTTCGGTTCAGTCA 58.448 34.615 0.00 0.00 0.00 3.41
3436 3481 8.038351 TCATTGTTATATCTTCGGTTCAGTCAA 58.962 33.333 0.00 0.00 0.00 3.18
3437 3482 7.591006 TTGTTATATCTTCGGTTCAGTCAAC 57.409 36.000 0.00 0.00 0.00 3.18
3438 3483 6.931838 TGTTATATCTTCGGTTCAGTCAACT 58.068 36.000 0.00 0.00 35.06 3.16
3439 3484 6.811665 TGTTATATCTTCGGTTCAGTCAACTG 59.188 38.462 3.69 3.69 45.08 3.16
3453 3498 5.163513 CAGTCAACTGATTTACAATTGGCC 58.836 41.667 10.83 0.00 46.59 5.36
3454 3499 5.047802 CAGTCAACTGATTTACAATTGGCCT 60.048 40.000 10.83 0.00 46.59 5.19
3455 3500 5.539955 AGTCAACTGATTTACAATTGGCCTT 59.460 36.000 10.83 0.00 40.53 4.35
3456 3501 5.863935 GTCAACTGATTTACAATTGGCCTTC 59.136 40.000 10.83 2.41 34.81 3.46
3457 3502 5.538053 TCAACTGATTTACAATTGGCCTTCA 59.462 36.000 10.83 6.79 36.53 3.02
3458 3503 6.211184 TCAACTGATTTACAATTGGCCTTCAT 59.789 34.615 10.83 0.00 36.53 2.57
3459 3504 6.610075 ACTGATTTACAATTGGCCTTCATT 57.390 33.333 10.83 0.00 0.00 2.57
3460 3505 6.633856 ACTGATTTACAATTGGCCTTCATTC 58.366 36.000 10.83 0.00 0.00 2.67
3461 3506 6.211184 ACTGATTTACAATTGGCCTTCATTCA 59.789 34.615 10.83 1.54 0.00 2.57
3462 3507 7.002250 TGATTTACAATTGGCCTTCATTCAA 57.998 32.000 10.83 0.00 0.00 2.69
3463 3508 7.622713 TGATTTACAATTGGCCTTCATTCAAT 58.377 30.769 10.83 0.00 33.12 2.57
3464 3509 8.102047 TGATTTACAATTGGCCTTCATTCAATT 58.898 29.630 10.83 0.00 40.44 2.32
3465 3510 8.866970 ATTTACAATTGGCCTTCATTCAATTT 57.133 26.923 10.83 0.00 38.55 1.82
3466 3511 8.688747 TTTACAATTGGCCTTCATTCAATTTT 57.311 26.923 10.83 0.00 38.55 1.82
3467 3512 8.688747 TTACAATTGGCCTTCATTCAATTTTT 57.311 26.923 10.83 0.00 38.55 1.94
3483 3528 1.885560 TTTTTGGCCGTTCGATCTCA 58.114 45.000 0.00 0.00 0.00 3.27
3484 3529 2.107950 TTTTGGCCGTTCGATCTCAT 57.892 45.000 0.00 0.00 0.00 2.90
3485 3530 1.368641 TTTGGCCGTTCGATCTCATG 58.631 50.000 0.00 0.00 0.00 3.07
3486 3531 1.089481 TTGGCCGTTCGATCTCATGC 61.089 55.000 0.00 0.00 0.00 4.06
3487 3532 2.247437 GGCCGTTCGATCTCATGCC 61.247 63.158 0.00 0.00 0.00 4.40
3488 3533 1.521457 GCCGTTCGATCTCATGCCA 60.521 57.895 0.00 0.00 0.00 4.92
3489 3534 1.089481 GCCGTTCGATCTCATGCCAA 61.089 55.000 0.00 0.00 0.00 4.52
3490 3535 0.933097 CCGTTCGATCTCATGCCAAG 59.067 55.000 0.00 0.00 0.00 3.61
3491 3536 1.471501 CCGTTCGATCTCATGCCAAGA 60.472 52.381 0.00 0.00 0.00 3.02
3492 3537 2.477825 CGTTCGATCTCATGCCAAGAT 58.522 47.619 0.00 0.00 36.19 2.40
3493 3538 2.474359 CGTTCGATCTCATGCCAAGATC 59.526 50.000 11.22 11.22 43.72 2.75
3503 3548 2.989639 CCAAGATCGGCACTGGGA 59.010 61.111 0.00 0.00 30.44 4.37
3504 3549 1.153289 CCAAGATCGGCACTGGGAG 60.153 63.158 0.00 0.00 30.44 4.30
3505 3550 1.817099 CAAGATCGGCACTGGGAGC 60.817 63.158 0.00 0.00 0.00 4.70
3506 3551 1.992277 AAGATCGGCACTGGGAGCT 60.992 57.895 0.00 0.00 0.00 4.09
3507 3552 2.202987 GATCGGCACTGGGAGCTG 60.203 66.667 0.00 0.00 39.72 4.24
3508 3553 3.746949 GATCGGCACTGGGAGCTGG 62.747 68.421 0.00 0.00 38.87 4.85
3511 3556 4.357279 GGCACTGGGAGCTGGCTT 62.357 66.667 0.00 0.00 0.00 4.35
3512 3557 2.282745 GCACTGGGAGCTGGCTTT 60.283 61.111 0.00 0.00 0.00 3.51
3513 3558 1.905354 GCACTGGGAGCTGGCTTTT 60.905 57.895 0.00 0.00 0.00 2.27
3514 3559 1.871126 GCACTGGGAGCTGGCTTTTC 61.871 60.000 0.00 0.00 0.00 2.29
3515 3560 1.302832 ACTGGGAGCTGGCTTTTCG 60.303 57.895 0.00 0.00 0.00 3.46
3516 3561 2.034066 TGGGAGCTGGCTTTTCGG 59.966 61.111 0.00 0.00 0.00 4.30
3517 3562 2.351276 GGGAGCTGGCTTTTCGGA 59.649 61.111 0.00 0.00 0.00 4.55
3518 3563 2.041115 GGGAGCTGGCTTTTCGGAC 61.041 63.158 0.00 0.00 0.00 4.79
3519 3564 2.391389 GGAGCTGGCTTTTCGGACG 61.391 63.158 0.00 0.00 0.00 4.79
3520 3565 1.668151 GAGCTGGCTTTTCGGACGT 60.668 57.895 0.00 0.00 0.00 4.34
3521 3566 1.227853 AGCTGGCTTTTCGGACGTT 60.228 52.632 0.00 0.00 0.00 3.99
3522 3567 0.818040 AGCTGGCTTTTCGGACGTTT 60.818 50.000 0.00 0.00 0.00 3.60
3523 3568 0.030235 GCTGGCTTTTCGGACGTTTT 59.970 50.000 0.00 0.00 0.00 2.43
3524 3569 1.535226 GCTGGCTTTTCGGACGTTTTT 60.535 47.619 0.00 0.00 0.00 1.94
3541 3586 3.467776 TTTTTGTTTGGCACCCAGC 57.532 47.368 0.00 0.00 44.65 4.85
3555 3600 4.781959 CAGCGCACCCGGCAAATG 62.782 66.667 11.47 0.00 45.17 2.32
3571 3616 3.672028 AAATGCCTTTTTGCGTTTGTG 57.328 38.095 2.67 0.00 45.96 3.33
3572 3617 0.936600 ATGCCTTTTTGCGTTTGTGC 59.063 45.000 0.00 0.00 0.00 4.57
3573 3618 0.108424 TGCCTTTTTGCGTTTGTGCT 60.108 45.000 0.00 0.00 35.36 4.40
3574 3619 0.301388 GCCTTTTTGCGTTTGTGCTG 59.699 50.000 0.00 0.00 35.36 4.41
3575 3620 1.919918 CCTTTTTGCGTTTGTGCTGA 58.080 45.000 0.00 0.00 35.36 4.26
3576 3621 1.587946 CCTTTTTGCGTTTGTGCTGAC 59.412 47.619 0.00 0.00 35.36 3.51
3577 3622 1.252524 CTTTTTGCGTTTGTGCTGACG 59.747 47.619 0.00 0.00 41.89 4.35
3578 3623 0.524392 TTTTGCGTTTGTGCTGACGG 60.524 50.000 0.00 0.00 39.52 4.79
3579 3624 1.649390 TTTGCGTTTGTGCTGACGGT 61.649 50.000 0.00 0.00 39.52 4.83
3580 3625 1.649390 TTGCGTTTGTGCTGACGGTT 61.649 50.000 0.00 0.00 39.52 4.44
3581 3626 1.063488 GCGTTTGTGCTGACGGTTT 59.937 52.632 0.00 0.00 39.52 3.27
3582 3627 0.524604 GCGTTTGTGCTGACGGTTTT 60.525 50.000 0.00 0.00 39.52 2.43
3583 3628 1.902840 CGTTTGTGCTGACGGTTTTT 58.097 45.000 0.00 0.00 35.74 1.94
3603 3648 3.866582 GCCCTGGGGGTGATCGAG 61.867 72.222 16.03 0.00 46.51 4.04
3604 3649 2.365635 CCCTGGGGGTGATCGAGT 60.366 66.667 4.27 0.00 38.25 4.18
3605 3650 1.995626 CCCTGGGGGTGATCGAGTT 60.996 63.158 4.27 0.00 38.25 3.01
3606 3651 1.562672 CCCTGGGGGTGATCGAGTTT 61.563 60.000 4.27 0.00 38.25 2.66
3607 3652 0.107654 CCTGGGGGTGATCGAGTTTC 60.108 60.000 0.00 0.00 0.00 2.78
3608 3653 0.107654 CTGGGGGTGATCGAGTTTCC 60.108 60.000 0.00 0.00 0.00 3.13
3609 3654 0.838554 TGGGGGTGATCGAGTTTCCA 60.839 55.000 0.00 0.00 0.00 3.53
3610 3655 0.107654 GGGGGTGATCGAGTTTCCAG 60.108 60.000 0.00 0.00 0.00 3.86
3611 3656 0.744771 GGGGTGATCGAGTTTCCAGC 60.745 60.000 0.00 0.00 0.00 4.85
3612 3657 0.744771 GGGTGATCGAGTTTCCAGCC 60.745 60.000 0.00 0.00 39.54 4.85
3613 3658 1.084370 GGTGATCGAGTTTCCAGCCG 61.084 60.000 0.00 0.00 0.00 5.52
3614 3659 1.447838 TGATCGAGTTTCCAGCCGC 60.448 57.895 0.00 0.00 0.00 6.53
3615 3660 2.509336 ATCGAGTTTCCAGCCGCG 60.509 61.111 0.00 0.00 0.00 6.46
3628 3673 3.131478 CCGCGCCCCTAGGTTTTG 61.131 66.667 8.29 0.00 34.57 2.44
3629 3674 3.131478 CGCGCCCCTAGGTTTTGG 61.131 66.667 8.29 2.44 34.57 3.28
3630 3675 3.449227 GCGCCCCTAGGTTTTGGC 61.449 66.667 14.96 14.96 40.54 4.52
3631 3676 2.754254 CGCCCCTAGGTTTTGGCC 60.754 66.667 18.08 0.00 40.87 5.36
3632 3677 2.363795 GCCCCTAGGTTTTGGCCC 60.364 66.667 14.21 0.00 37.94 5.80
3633 3678 2.362963 CCCCTAGGTTTTGGCCCC 59.637 66.667 8.29 0.00 0.00 5.80
3634 3679 2.362963 CCCTAGGTTTTGGCCCCC 59.637 66.667 8.29 0.00 0.00 5.40
3635 3680 2.044352 CCTAGGTTTTGGCCCCCG 60.044 66.667 0.00 0.00 0.00 5.73
3636 3681 2.044352 CTAGGTTTTGGCCCCCGG 60.044 66.667 0.00 0.00 0.00 5.73
3637 3682 2.532199 TAGGTTTTGGCCCCCGGA 60.532 61.111 0.73 0.00 0.00 5.14
3638 3683 2.831894 CTAGGTTTTGGCCCCCGGAC 62.832 65.000 0.73 0.00 0.00 4.79
3647 3692 4.978705 CCCCCGGACGCCCAAAAA 62.979 66.667 0.73 0.00 0.00 1.94
3648 3693 2.678580 CCCCGGACGCCCAAAAAT 60.679 61.111 0.73 0.00 0.00 1.82
3649 3694 2.279810 CCCCGGACGCCCAAAAATT 61.280 57.895 0.73 0.00 0.00 1.82
3650 3695 1.214325 CCCGGACGCCCAAAAATTC 59.786 57.895 0.73 0.00 0.00 2.17
3651 3696 1.154112 CCGGACGCCCAAAAATTCG 60.154 57.895 0.00 0.00 0.00 3.34
3652 3697 1.579084 CCGGACGCCCAAAAATTCGA 61.579 55.000 0.00 0.00 0.00 3.71
3653 3698 0.238817 CGGACGCCCAAAAATTCGAA 59.761 50.000 0.00 0.00 0.00 3.71
3654 3699 1.693467 GGACGCCCAAAAATTCGAAC 58.307 50.000 0.00 0.00 0.00 3.95
3655 3700 1.268625 GGACGCCCAAAAATTCGAACT 59.731 47.619 0.00 0.00 0.00 3.01
3656 3701 2.287970 GGACGCCCAAAAATTCGAACTT 60.288 45.455 0.00 0.00 0.00 2.66
3657 3702 2.724174 GACGCCCAAAAATTCGAACTTG 59.276 45.455 0.00 4.77 0.00 3.16
3658 3703 2.100087 ACGCCCAAAAATTCGAACTTGT 59.900 40.909 0.00 0.00 0.00 3.16
3659 3704 2.724174 CGCCCAAAAATTCGAACTTGTC 59.276 45.455 0.00 0.00 0.00 3.18
3660 3705 3.550030 CGCCCAAAAATTCGAACTTGTCT 60.550 43.478 0.00 0.00 0.00 3.41
3661 3706 4.368315 GCCCAAAAATTCGAACTTGTCTT 58.632 39.130 0.00 0.00 0.00 3.01
3662 3707 4.808895 GCCCAAAAATTCGAACTTGTCTTT 59.191 37.500 0.00 0.00 0.00 2.52
3663 3708 5.051039 GCCCAAAAATTCGAACTTGTCTTTC 60.051 40.000 0.00 0.00 0.00 2.62
3664 3709 5.462068 CCCAAAAATTCGAACTTGTCTTTCC 59.538 40.000 0.00 0.00 0.00 3.13
3665 3710 5.462068 CCAAAAATTCGAACTTGTCTTTCCC 59.538 40.000 0.00 0.00 0.00 3.97
3666 3711 4.483476 AAATTCGAACTTGTCTTTCCCG 57.517 40.909 0.00 0.00 0.00 5.14
3667 3712 1.223187 TTCGAACTTGTCTTTCCCGC 58.777 50.000 0.00 0.00 0.00 6.13
3668 3713 0.391597 TCGAACTTGTCTTTCCCGCT 59.608 50.000 0.00 0.00 0.00 5.52
3669 3714 0.512952 CGAACTTGTCTTTCCCGCTG 59.487 55.000 0.00 0.00 0.00 5.18
3670 3715 0.238553 GAACTTGTCTTTCCCGCTGC 59.761 55.000 0.00 0.00 0.00 5.25
3671 3716 1.172812 AACTTGTCTTTCCCGCTGCC 61.173 55.000 0.00 0.00 0.00 4.85
3672 3717 1.600636 CTTGTCTTTCCCGCTGCCA 60.601 57.895 0.00 0.00 0.00 4.92
3673 3718 1.152860 TTGTCTTTCCCGCTGCCAA 60.153 52.632 0.00 0.00 0.00 4.52
3674 3719 0.753479 TTGTCTTTCCCGCTGCCAAA 60.753 50.000 0.00 0.00 0.00 3.28
3675 3720 0.753479 TGTCTTTCCCGCTGCCAAAA 60.753 50.000 0.00 0.00 0.00 2.44
3676 3721 0.387565 GTCTTTCCCGCTGCCAAAAA 59.612 50.000 0.00 0.00 0.00 1.94
3693 3738 3.471495 AAAAACACAGATTCGGCGATC 57.529 42.857 11.76 10.72 0.00 3.69
3694 3739 2.093306 AAACACAGATTCGGCGATCA 57.907 45.000 11.76 0.00 0.00 2.92
3695 3740 2.315925 AACACAGATTCGGCGATCAT 57.684 45.000 11.76 0.93 0.00 2.45
3696 3741 1.858091 ACACAGATTCGGCGATCATC 58.142 50.000 11.76 12.20 0.00 2.92
3697 3742 1.136891 ACACAGATTCGGCGATCATCA 59.863 47.619 20.16 2.59 0.00 3.07
3698 3743 2.224137 ACACAGATTCGGCGATCATCAT 60.224 45.455 20.16 7.47 0.00 2.45
3699 3744 2.157085 CACAGATTCGGCGATCATCATG 59.843 50.000 20.16 16.72 0.00 3.07
3700 3745 1.128136 CAGATTCGGCGATCATCATGC 59.872 52.381 20.16 3.14 0.00 4.06
3701 3746 0.445436 GATTCGGCGATCATCATGCC 59.555 55.000 11.76 0.00 45.39 4.40
3706 3751 3.839654 GCGATCATCATGCCACAAG 57.160 52.632 0.00 0.00 0.00 3.16
3707 3752 1.019673 GCGATCATCATGCCACAAGT 58.980 50.000 0.00 0.00 0.00 3.16
3708 3753 1.003116 GCGATCATCATGCCACAAGTC 60.003 52.381 0.00 0.00 0.00 3.01
3709 3754 1.259770 CGATCATCATGCCACAAGTCG 59.740 52.381 0.00 0.00 0.00 4.18
3710 3755 1.600957 GATCATCATGCCACAAGTCGG 59.399 52.381 0.00 0.00 0.00 4.79
3716 3761 2.434185 GCCACAAGTCGGCGATCA 60.434 61.111 14.79 0.00 40.35 2.92
3717 3762 1.815421 GCCACAAGTCGGCGATCAT 60.815 57.895 14.79 0.00 40.35 2.45
3718 3763 1.766143 GCCACAAGTCGGCGATCATC 61.766 60.000 14.79 0.00 40.35 2.92
3719 3764 0.460109 CCACAAGTCGGCGATCATCA 60.460 55.000 14.79 0.00 0.00 3.07
3720 3765 1.575244 CACAAGTCGGCGATCATCAT 58.425 50.000 14.79 0.00 0.00 2.45
3721 3766 1.259770 CACAAGTCGGCGATCATCATG 59.740 52.381 14.79 5.86 0.00 3.07
3722 3767 0.234106 CAAGTCGGCGATCATCATGC 59.766 55.000 14.79 0.00 0.00 4.06
3723 3768 0.882042 AAGTCGGCGATCATCATGCC 60.882 55.000 14.79 0.00 45.39 4.40
3728 3773 1.947013 GCGATCATCATGCCACAGG 59.053 57.895 0.00 0.00 0.00 4.00
3729 3774 0.816825 GCGATCATCATGCCACAGGT 60.817 55.000 0.00 0.00 0.00 4.00
3730 3775 1.224075 CGATCATCATGCCACAGGTC 58.776 55.000 0.00 0.00 0.00 3.85
3731 3776 1.224075 GATCATCATGCCACAGGTCG 58.776 55.000 0.00 0.00 0.00 4.79
3732 3777 0.179037 ATCATCATGCCACAGGTCGG 60.179 55.000 0.00 0.00 0.00 4.79
3733 3778 1.078214 CATCATGCCACAGGTCGGT 60.078 57.895 0.00 0.00 0.00 4.69
3734 3779 1.078214 ATCATGCCACAGGTCGGTG 60.078 57.895 0.00 0.00 38.52 4.94
3735 3780 1.552799 ATCATGCCACAGGTCGGTGA 61.553 55.000 2.94 0.00 41.32 4.02
3736 3781 1.078214 CATGCCACAGGTCGGTGAT 60.078 57.895 2.94 0.00 41.32 3.06
3737 3782 1.091771 CATGCCACAGGTCGGTGATC 61.092 60.000 2.94 0.00 41.32 2.92
3738 3783 1.552799 ATGCCACAGGTCGGTGATCA 61.553 55.000 2.94 0.00 41.32 2.92
3739 3784 1.003839 GCCACAGGTCGGTGATCAA 60.004 57.895 0.00 0.00 41.32 2.57
3740 3785 0.605319 GCCACAGGTCGGTGATCAAA 60.605 55.000 0.00 0.00 41.32 2.69
3741 3786 1.890876 CCACAGGTCGGTGATCAAAA 58.109 50.000 0.00 0.00 41.32 2.44
3742 3787 1.535462 CCACAGGTCGGTGATCAAAAC 59.465 52.381 0.00 0.00 41.32 2.43
3743 3788 2.217750 CACAGGTCGGTGATCAAAACA 58.782 47.619 0.00 0.00 41.32 2.83
3744 3789 2.813754 CACAGGTCGGTGATCAAAACAT 59.186 45.455 0.00 0.00 41.32 2.71
3745 3790 4.000325 CACAGGTCGGTGATCAAAACATA 59.000 43.478 0.00 0.00 41.32 2.29
3746 3791 4.000988 ACAGGTCGGTGATCAAAACATAC 58.999 43.478 0.00 0.00 0.00 2.39
3747 3792 3.374058 CAGGTCGGTGATCAAAACATACC 59.626 47.826 0.00 0.00 0.00 2.73
3748 3793 2.681344 GGTCGGTGATCAAAACATACCC 59.319 50.000 0.00 0.00 0.00 3.69
3749 3794 3.340034 GTCGGTGATCAAAACATACCCA 58.660 45.455 0.00 0.00 0.00 4.51
3750 3795 3.754323 GTCGGTGATCAAAACATACCCAA 59.246 43.478 0.00 0.00 0.00 4.12
3751 3796 4.216687 GTCGGTGATCAAAACATACCCAAA 59.783 41.667 0.00 0.00 0.00 3.28
3752 3797 4.827835 TCGGTGATCAAAACATACCCAAAA 59.172 37.500 0.00 0.00 0.00 2.44
3753 3798 5.048364 TCGGTGATCAAAACATACCCAAAAG 60.048 40.000 0.00 0.00 0.00 2.27
3754 3799 5.278758 CGGTGATCAAAACATACCCAAAAGT 60.279 40.000 0.00 0.00 0.00 2.66
3755 3800 6.521162 GGTGATCAAAACATACCCAAAAGTT 58.479 36.000 0.00 0.00 0.00 2.66
3756 3801 6.645003 GGTGATCAAAACATACCCAAAAGTTC 59.355 38.462 0.00 0.00 0.00 3.01
3757 3802 6.362283 GTGATCAAAACATACCCAAAAGTTCG 59.638 38.462 0.00 0.00 0.00 3.95
3758 3803 5.189659 TCAAAACATACCCAAAAGTTCGG 57.810 39.130 0.00 0.00 0.00 4.30
3759 3804 3.653539 AAACATACCCAAAAGTTCGGC 57.346 42.857 0.00 0.00 0.00 5.54
3760 3805 1.161843 ACATACCCAAAAGTTCGGCG 58.838 50.000 0.00 0.00 0.00 6.46
3761 3806 1.270947 ACATACCCAAAAGTTCGGCGA 60.271 47.619 4.99 4.99 0.00 5.54
3762 3807 1.129811 CATACCCAAAAGTTCGGCGAC 59.870 52.381 10.16 5.11 0.00 5.19
3763 3808 0.603439 TACCCAAAAGTTCGGCGACC 60.603 55.000 10.16 1.12 0.00 4.79
3764 3809 1.894756 CCCAAAAGTTCGGCGACCA 60.895 57.895 10.16 0.00 0.00 4.02
3765 3810 1.574428 CCAAAAGTTCGGCGACCAG 59.426 57.895 10.16 0.00 0.00 4.00
3766 3811 1.574428 CAAAAGTTCGGCGACCAGG 59.426 57.895 10.16 0.00 0.00 4.45
3767 3812 0.882927 CAAAAGTTCGGCGACCAGGA 60.883 55.000 10.16 0.00 0.00 3.86
3768 3813 0.179040 AAAAGTTCGGCGACCAGGAA 60.179 50.000 10.16 0.00 0.00 3.36
3769 3814 0.602905 AAAGTTCGGCGACCAGGAAG 60.603 55.000 10.16 0.00 0.00 3.46
3770 3815 2.434359 GTTCGGCGACCAGGAAGG 60.434 66.667 10.16 0.00 45.67 3.46
3771 3816 2.602267 TTCGGCGACCAGGAAGGA 60.602 61.111 10.16 0.00 41.22 3.36
3772 3817 2.211410 TTCGGCGACCAGGAAGGAA 61.211 57.895 10.16 0.00 41.22 3.36
3773 3818 1.550130 TTCGGCGACCAGGAAGGAAT 61.550 55.000 10.16 0.00 41.22 3.01
3774 3819 1.521681 CGGCGACCAGGAAGGAATC 60.522 63.158 0.00 0.00 41.22 2.52
3775 3820 1.602237 GGCGACCAGGAAGGAATCA 59.398 57.895 0.00 0.00 41.22 2.57
3776 3821 0.181350 GGCGACCAGGAAGGAATCAT 59.819 55.000 0.00 0.00 41.22 2.45
3777 3822 1.416401 GGCGACCAGGAAGGAATCATA 59.584 52.381 0.00 0.00 41.22 2.15
3778 3823 2.548920 GGCGACCAGGAAGGAATCATAG 60.549 54.545 0.00 0.00 41.22 2.23
3779 3824 2.365617 GCGACCAGGAAGGAATCATAGA 59.634 50.000 0.00 0.00 41.22 1.98
3780 3825 3.800604 GCGACCAGGAAGGAATCATAGAC 60.801 52.174 0.00 0.00 41.22 2.59
3781 3826 3.384789 CGACCAGGAAGGAATCATAGACA 59.615 47.826 0.00 0.00 41.22 3.41
3782 3827 4.039730 CGACCAGGAAGGAATCATAGACAT 59.960 45.833 0.00 0.00 41.22 3.06
3783 3828 5.301835 ACCAGGAAGGAATCATAGACATG 57.698 43.478 0.00 0.00 41.22 3.21
3784 3829 4.103785 ACCAGGAAGGAATCATAGACATGG 59.896 45.833 0.00 0.00 41.22 3.66
3785 3830 4.349048 CCAGGAAGGAATCATAGACATGGA 59.651 45.833 0.00 0.00 41.22 3.41
3786 3831 5.163163 CCAGGAAGGAATCATAGACATGGAA 60.163 44.000 0.00 0.00 41.22 3.53
3787 3832 5.762218 CAGGAAGGAATCATAGACATGGAAC 59.238 44.000 0.00 0.00 32.61 3.62
3788 3833 4.752101 GGAAGGAATCATAGACATGGAACG 59.248 45.833 0.00 0.00 32.61 3.95
3789 3834 3.733337 AGGAATCATAGACATGGAACGC 58.267 45.455 0.00 0.00 32.61 4.84
3790 3835 3.134623 AGGAATCATAGACATGGAACGCA 59.865 43.478 0.00 0.00 32.61 5.24
3791 3836 4.067896 GGAATCATAGACATGGAACGCAT 58.932 43.478 0.00 0.00 32.61 4.73
3792 3837 4.153117 GGAATCATAGACATGGAACGCATC 59.847 45.833 0.00 0.00 32.61 3.91
3793 3838 3.817709 TCATAGACATGGAACGCATCA 57.182 42.857 0.00 0.00 32.61 3.07
3794 3839 4.135747 TCATAGACATGGAACGCATCAA 57.864 40.909 0.00 0.00 32.61 2.57
3795 3840 4.512484 TCATAGACATGGAACGCATCAAA 58.488 39.130 0.00 0.00 32.61 2.69
3796 3841 4.332543 TCATAGACATGGAACGCATCAAAC 59.667 41.667 0.00 0.00 32.61 2.93
3797 3842 1.464608 AGACATGGAACGCATCAAACG 59.535 47.619 0.00 0.00 0.00 3.60
3799 3844 1.069296 ACATGGAACGCATCAAACGTG 60.069 47.619 0.00 0.00 44.30 4.49
3800 3845 0.521291 ATGGAACGCATCAAACGTGG 59.479 50.000 0.00 0.00 44.30 4.94
3801 3846 1.209127 GGAACGCATCAAACGTGGG 59.791 57.895 0.00 0.00 44.30 4.61
3802 3847 1.231958 GGAACGCATCAAACGTGGGA 61.232 55.000 0.00 0.00 44.30 4.37
3803 3848 0.110373 GAACGCATCAAACGTGGGAC 60.110 55.000 0.00 0.00 44.30 4.46
3804 3849 0.534203 AACGCATCAAACGTGGGACT 60.534 50.000 0.00 0.00 44.30 3.85
3805 3850 1.227999 ACGCATCAAACGTGGGACTG 61.228 55.000 0.00 0.00 43.23 3.51
3806 3851 1.875963 GCATCAAACGTGGGACTGG 59.124 57.895 0.00 0.00 0.00 4.00
3807 3852 0.889186 GCATCAAACGTGGGACTGGT 60.889 55.000 0.00 0.00 0.00 4.00
3808 3853 1.156736 CATCAAACGTGGGACTGGTC 58.843 55.000 0.00 0.00 0.00 4.02
3809 3854 0.320421 ATCAAACGTGGGACTGGTCG 60.320 55.000 0.00 0.00 0.00 4.79
3810 3855 1.959226 CAAACGTGGGACTGGTCGG 60.959 63.158 0.00 0.00 0.00 4.79
3811 3856 3.173167 AAACGTGGGACTGGTCGGG 62.173 63.158 0.00 0.00 0.00 5.14
3814 3859 3.246880 GTGGGACTGGTCGGGGTT 61.247 66.667 0.00 0.00 0.00 4.11
3815 3860 3.246112 TGGGACTGGTCGGGGTTG 61.246 66.667 0.00 0.00 0.00 3.77
3816 3861 4.029809 GGGACTGGTCGGGGTTGG 62.030 72.222 0.00 0.00 0.00 3.77
3817 3862 3.246880 GGACTGGTCGGGGTTGGT 61.247 66.667 0.00 0.00 0.00 3.67
3818 3863 2.032071 GACTGGTCGGGGTTGGTG 59.968 66.667 0.00 0.00 0.00 4.17
3819 3864 2.770904 ACTGGTCGGGGTTGGTGT 60.771 61.111 0.00 0.00 0.00 4.16
3820 3865 2.032071 CTGGTCGGGGTTGGTGTC 59.968 66.667 0.00 0.00 0.00 3.67
3821 3866 3.876589 CTGGTCGGGGTTGGTGTCG 62.877 68.421 0.00 0.00 0.00 4.35
3840 3885 4.988598 CGTGGGCGTGGCTTCAGT 62.989 66.667 0.00 0.00 0.00 3.41
3841 3886 3.357079 GTGGGCGTGGCTTCAGTG 61.357 66.667 0.00 0.00 0.00 3.66
3844 3889 3.426568 GGCGTGGCTTCAGTGCTC 61.427 66.667 0.00 0.00 0.00 4.26
3845 3890 2.666190 GCGTGGCTTCAGTGCTCA 60.666 61.111 0.00 0.00 0.00 4.26
3846 3891 2.675056 GCGTGGCTTCAGTGCTCAG 61.675 63.158 0.00 0.00 0.00 3.35
3847 3892 2.031516 CGTGGCTTCAGTGCTCAGG 61.032 63.158 0.00 0.00 0.00 3.86
3848 3893 2.033141 TGGCTTCAGTGCTCAGGC 59.967 61.111 4.11 4.11 39.26 4.85
3849 3894 2.350514 GGCTTCAGTGCTCAGGCT 59.649 61.111 3.89 0.00 39.59 4.58
3850 3895 1.744741 GGCTTCAGTGCTCAGGCTC 60.745 63.158 0.00 0.00 39.59 4.70
3851 3896 2.099431 GCTTCAGTGCTCAGGCTCG 61.099 63.158 0.00 0.00 39.59 5.03
3852 3897 1.447489 CTTCAGTGCTCAGGCTCGG 60.447 63.158 0.00 0.00 39.59 4.63
3853 3898 3.596066 TTCAGTGCTCAGGCTCGGC 62.596 63.158 1.76 1.76 39.59 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.849417 AATCCTTCCCATCTCCCTGC 59.151 55.000 0.00 0.00 0.00 4.85
1 2 3.677156 AAAATCCTTCCCATCTCCCTG 57.323 47.619 0.00 0.00 0.00 4.45
2 3 4.796265 ACTAAAAATCCTTCCCATCTCCCT 59.204 41.667 0.00 0.00 0.00 4.20
3 4 5.130705 ACTAAAAATCCTTCCCATCTCCC 57.869 43.478 0.00 0.00 0.00 4.30
4 5 5.133941 GGACTAAAAATCCTTCCCATCTCC 58.866 45.833 0.00 0.00 33.03 3.71
5 6 5.133941 GGGACTAAAAATCCTTCCCATCTC 58.866 45.833 0.00 0.00 44.84 2.75
6 7 5.130705 GGGACTAAAAATCCTTCCCATCT 57.869 43.478 0.00 0.00 44.84 2.90
13 14 5.860648 TCCTGAAGGGACTAAAAATCCTT 57.139 39.130 0.00 0.00 38.49 3.36
26 27 0.186873 CCCCCATGAATCCTGAAGGG 59.813 60.000 0.00 0.00 35.41 3.95
27 28 3.835810 CCCCCATGAATCCTGAAGG 57.164 57.895 0.00 0.00 0.00 3.46
42 43 0.476771 ATCGTCTCTCTCTCTCCCCC 59.523 60.000 0.00 0.00 0.00 5.40
43 44 3.495434 TTATCGTCTCTCTCTCTCCCC 57.505 52.381 0.00 0.00 0.00 4.81
44 45 4.647611 TGATTATCGTCTCTCTCTCTCCC 58.352 47.826 0.00 0.00 0.00 4.30
45 46 5.179368 CACTGATTATCGTCTCTCTCTCTCC 59.821 48.000 0.00 0.00 0.00 3.71
46 47 5.179368 CCACTGATTATCGTCTCTCTCTCTC 59.821 48.000 0.00 0.00 0.00 3.20
47 48 5.063204 CCACTGATTATCGTCTCTCTCTCT 58.937 45.833 0.00 0.00 0.00 3.10
48 49 4.320202 GCCACTGATTATCGTCTCTCTCTC 60.320 50.000 0.00 0.00 0.00 3.20
49 50 3.568007 GCCACTGATTATCGTCTCTCTCT 59.432 47.826 0.00 0.00 0.00 3.10
50 51 3.608241 CGCCACTGATTATCGTCTCTCTC 60.608 52.174 0.00 0.00 0.00 3.20
51 52 2.292016 CGCCACTGATTATCGTCTCTCT 59.708 50.000 0.00 0.00 0.00 3.10
52 53 2.605823 CCGCCACTGATTATCGTCTCTC 60.606 54.545 0.00 0.00 0.00 3.20
53 54 1.338337 CCGCCACTGATTATCGTCTCT 59.662 52.381 0.00 0.00 0.00 3.10
54 55 1.337071 TCCGCCACTGATTATCGTCTC 59.663 52.381 0.00 0.00 0.00 3.36
55 56 1.338337 CTCCGCCACTGATTATCGTCT 59.662 52.381 0.00 0.00 0.00 4.18
56 57 1.772182 CTCCGCCACTGATTATCGTC 58.228 55.000 0.00 0.00 0.00 4.20
57 58 0.249489 GCTCCGCCACTGATTATCGT 60.249 55.000 0.00 0.00 0.00 3.73
58 59 0.032678 AGCTCCGCCACTGATTATCG 59.967 55.000 0.00 0.00 0.00 2.92
59 60 3.257393 CATAGCTCCGCCACTGATTATC 58.743 50.000 0.00 0.00 0.00 1.75
60 61 2.634940 ACATAGCTCCGCCACTGATTAT 59.365 45.455 0.00 0.00 0.00 1.28
61 62 2.039418 ACATAGCTCCGCCACTGATTA 58.961 47.619 0.00 0.00 0.00 1.75
62 63 0.833287 ACATAGCTCCGCCACTGATT 59.167 50.000 0.00 0.00 0.00 2.57
63 64 0.833287 AACATAGCTCCGCCACTGAT 59.167 50.000 0.00 0.00 0.00 2.90
64 65 0.108186 CAACATAGCTCCGCCACTGA 60.108 55.000 0.00 0.00 0.00 3.41
65 66 1.091771 CCAACATAGCTCCGCCACTG 61.092 60.000 0.00 0.00 0.00 3.66
66 67 1.221840 CCAACATAGCTCCGCCACT 59.778 57.895 0.00 0.00 0.00 4.00
67 68 1.819632 CCCAACATAGCTCCGCCAC 60.820 63.158 0.00 0.00 0.00 5.01
68 69 2.589540 CCCAACATAGCTCCGCCA 59.410 61.111 0.00 0.00 0.00 5.69
69 70 2.203209 CCCCAACATAGCTCCGCC 60.203 66.667 0.00 0.00 0.00 6.13
70 71 2.902343 GCCCCAACATAGCTCCGC 60.902 66.667 0.00 0.00 0.00 5.54
71 72 2.203209 GGCCCCAACATAGCTCCG 60.203 66.667 0.00 0.00 0.00 4.63
72 73 1.152881 CTGGCCCCAACATAGCTCC 60.153 63.158 0.00 0.00 0.00 4.70
73 74 1.152881 CCTGGCCCCAACATAGCTC 60.153 63.158 0.00 0.00 0.00 4.09
74 75 2.693871 CCCTGGCCCCAACATAGCT 61.694 63.158 0.00 0.00 0.00 3.32
75 76 2.123726 CCCTGGCCCCAACATAGC 60.124 66.667 0.00 0.00 0.00 2.97
76 77 2.603008 CCCCTGGCCCCAACATAG 59.397 66.667 0.00 0.00 0.00 2.23
77 78 3.026847 CCCCCTGGCCCCAACATA 61.027 66.667 0.00 0.00 0.00 2.29
109 110 8.403732 TTTCTTCAGAAATTGAGCCAAGGCTG 62.404 42.308 20.00 2.19 44.00 4.85
110 111 6.449308 TTTCTTCAGAAATTGAGCCAAGGCT 61.449 40.000 14.54 14.54 45.31 4.58
111 112 2.821969 TCTTCAGAAATTGAGCCAAGGC 59.178 45.455 2.02 2.02 37.07 4.35
112 113 5.458041 TTTCTTCAGAAATTGAGCCAAGG 57.542 39.130 0.00 0.00 38.94 3.61
160 161 1.338337 AGATTATCGTCAGTGGCGGAG 59.662 52.381 18.43 0.00 0.00 4.63
161 162 1.337071 GAGATTATCGTCAGTGGCGGA 59.663 52.381 18.43 4.44 0.00 5.54
162 163 1.338337 AGAGATTATCGTCAGTGGCGG 59.662 52.381 18.43 0.00 0.00 6.13
163 164 2.605823 GGAGAGATTATCGTCAGTGGCG 60.606 54.545 11.78 11.78 0.00 5.69
164 165 2.288518 GGGAGAGATTATCGTCAGTGGC 60.289 54.545 0.00 0.00 0.00 5.01
165 166 2.030717 CGGGAGAGATTATCGTCAGTGG 60.031 54.545 0.00 0.00 0.00 4.00
166 167 2.619177 ACGGGAGAGATTATCGTCAGTG 59.381 50.000 0.00 0.00 0.00 3.66
167 168 2.933573 ACGGGAGAGATTATCGTCAGT 58.066 47.619 0.00 0.00 0.00 3.41
168 169 3.992260 AACGGGAGAGATTATCGTCAG 57.008 47.619 0.00 0.00 33.34 3.51
169 170 6.401047 AAATAACGGGAGAGATTATCGTCA 57.599 37.500 0.00 0.00 33.34 4.35
213 214 2.507102 CGAGCAGTACCACCAGCG 60.507 66.667 0.00 0.00 0.00 5.18
292 293 7.609056 TCCATCACAGGAACTAAACTTAGTAC 58.391 38.462 2.62 0.49 42.86 2.73
293 294 7.672660 TCTCCATCACAGGAACTAAACTTAGTA 59.327 37.037 2.62 0.00 42.86 1.82
294 295 6.497259 TCTCCATCACAGGAACTAAACTTAGT 59.503 38.462 0.00 0.00 45.43 2.24
295 296 6.814146 GTCTCCATCACAGGAACTAAACTTAG 59.186 42.308 0.00 0.00 36.02 2.18
296 297 6.295688 GGTCTCCATCACAGGAACTAAACTTA 60.296 42.308 0.00 0.00 36.02 2.24
362 363 0.181350 CAAGTGGATGTAGGGGGAGC 59.819 60.000 0.00 0.00 0.00 4.70
418 422 8.569641 AGACGTGACTCTAAGGTATCAATTATC 58.430 37.037 0.00 0.00 0.00 1.75
419 423 8.466617 AGACGTGACTCTAAGGTATCAATTAT 57.533 34.615 0.00 0.00 0.00 1.28
422 426 7.876936 TTAGACGTGACTCTAAGGTATCAAT 57.123 36.000 0.00 0.00 30.65 2.57
532 540 3.074412 CACATGGGTACAAAGGACTGAC 58.926 50.000 0.00 0.00 0.00 3.51
546 554 1.420514 AGATCATGGAGAGCACATGGG 59.579 52.381 0.00 0.00 44.42 4.00
596 627 3.515602 AACCCATCTTGCTCTTGTTCT 57.484 42.857 0.00 0.00 0.00 3.01
621 652 5.738909 AGTCATCCACTAGATCACCAAAAG 58.261 41.667 0.00 0.00 31.37 2.27
708 739 6.624352 AAATTCACACATCTAATGATCCCG 57.376 37.500 0.00 0.00 0.00 5.14
709 740 9.736023 GTAAAAATTCACACATCTAATGATCCC 57.264 33.333 0.00 0.00 0.00 3.85
864 895 3.002791 TCACTGATCCAAACGCATCTTC 58.997 45.455 0.00 0.00 0.00 2.87
961 992 6.202379 GGGTAAAAGGAGCGATTCTATGTTAC 59.798 42.308 0.00 0.00 0.00 2.50
979 1010 7.466804 AGAGGATGTAAGACAAATGGGTAAAA 58.533 34.615 0.00 0.00 0.00 1.52
983 1014 5.520748 AAGAGGATGTAAGACAAATGGGT 57.479 39.130 0.00 0.00 0.00 4.51
1187 1219 4.884668 AGAATGTAAGGACCAAGACGAA 57.115 40.909 0.00 0.00 0.00 3.85
1279 1311 1.604593 CCAGGCAGACCCCACTTTG 60.605 63.158 0.00 0.00 36.11 2.77
1352 1384 1.251251 AGCAAAGTGGAACCATCAGC 58.749 50.000 0.00 0.29 37.80 4.26
1922 1954 0.110104 GGAATCCTCCATGCCTCCAG 59.890 60.000 0.00 0.00 41.96 3.86
1982 2014 2.086869 CAGGAAGGTGTATGCAACCAG 58.913 52.381 8.72 0.00 31.21 4.00
2017 2049 5.126545 AGACTTACGTGTATGGCTGATGTAA 59.873 40.000 0.00 0.00 28.64 2.41
2120 2152 5.435686 AGCATGGTTCAGGTTATAACAGA 57.564 39.130 17.16 11.18 0.00 3.41
2148 2180 5.065731 GCAAAGGTCTATCAGGAATGAACAG 59.934 44.000 0.00 0.00 0.00 3.16
2165 2197 4.262164 CCAATAGCTGAAACAAGCAAAGGT 60.262 41.667 0.00 0.00 46.08 3.50
2276 2308 4.681483 CGTGCATTTAAGCGATCAGAGATA 59.319 41.667 0.00 0.00 37.31 1.98
2303 2335 3.768185 GAAGCTCGCGGCCGTGATA 62.768 63.158 38.90 20.39 43.05 2.15
2447 2479 0.533531 CAAGGTCAGCTGACACTGCA 60.534 55.000 39.71 7.07 46.47 4.41
2552 2584 1.001020 TGTGAGCAATGGCCCGATT 60.001 52.632 0.00 0.00 42.56 3.34
2838 2870 4.748892 TCCTTCAGCTTATTTCAGACTCG 58.251 43.478 0.00 0.00 0.00 4.18
2966 2998 1.408702 TGTGGGCTCAGAAACTTTTGC 59.591 47.619 0.00 0.00 0.00 3.68
3002 3034 6.262273 CCCAATTCGTATTTACAAGGCACTAT 59.738 38.462 0.00 0.00 38.49 2.12
3099 3131 9.756571 GTAGAGGGAGATTTCCTTATATCTACA 57.243 37.037 17.25 0.00 43.49 2.74
3137 3169 2.977580 AGATGGCCAGCAGATAGAATCA 59.022 45.455 25.38 0.00 0.00 2.57
3310 3352 5.825593 TCAGATCACTCCAAAAGTTAGGT 57.174 39.130 0.00 0.00 35.45 3.08
3430 3475 5.047802 AGGCCAATTGTAAATCAGTTGACTG 60.048 40.000 5.01 4.77 43.42 3.51
3431 3476 5.079643 AGGCCAATTGTAAATCAGTTGACT 58.920 37.500 5.01 0.00 43.42 3.41
3432 3477 5.391312 AGGCCAATTGTAAATCAGTTGAC 57.609 39.130 5.01 0.00 43.42 3.18
3433 3478 5.538053 TGAAGGCCAATTGTAAATCAGTTGA 59.462 36.000 5.01 0.00 43.42 3.18
3434 3479 5.782047 TGAAGGCCAATTGTAAATCAGTTG 58.218 37.500 5.01 0.00 41.42 3.16
3435 3480 6.610075 ATGAAGGCCAATTGTAAATCAGTT 57.390 33.333 5.01 0.00 0.00 3.16
3436 3481 6.211184 TGAATGAAGGCCAATTGTAAATCAGT 59.789 34.615 5.01 3.27 0.00 3.41
3437 3482 6.632909 TGAATGAAGGCCAATTGTAAATCAG 58.367 36.000 5.01 0.00 0.00 2.90
3438 3483 6.602410 TGAATGAAGGCCAATTGTAAATCA 57.398 33.333 5.01 4.42 0.00 2.57
3439 3484 8.496707 AATTGAATGAAGGCCAATTGTAAATC 57.503 30.769 5.01 0.00 38.58 2.17
3440 3485 8.866970 AAATTGAATGAAGGCCAATTGTAAAT 57.133 26.923 5.01 0.00 39.56 1.40
3441 3486 8.688747 AAAATTGAATGAAGGCCAATTGTAAA 57.311 26.923 5.01 0.00 39.56 2.01
3442 3487 8.688747 AAAAATTGAATGAAGGCCAATTGTAA 57.311 26.923 5.01 0.60 39.56 2.41
3464 3509 1.885560 TGAGATCGAACGGCCAAAAA 58.114 45.000 2.24 0.00 0.00 1.94
3465 3510 1.737236 CATGAGATCGAACGGCCAAAA 59.263 47.619 2.24 0.00 0.00 2.44
3466 3511 1.368641 CATGAGATCGAACGGCCAAA 58.631 50.000 2.24 0.00 0.00 3.28
3467 3512 1.089481 GCATGAGATCGAACGGCCAA 61.089 55.000 2.24 0.00 0.00 4.52
3468 3513 1.521457 GCATGAGATCGAACGGCCA 60.521 57.895 2.24 0.00 0.00 5.36
3469 3514 2.247437 GGCATGAGATCGAACGGCC 61.247 63.158 0.00 0.00 0.00 6.13
3470 3515 1.089481 TTGGCATGAGATCGAACGGC 61.089 55.000 0.00 0.00 0.00 5.68
3471 3516 0.933097 CTTGGCATGAGATCGAACGG 59.067 55.000 0.00 0.00 0.00 4.44
3472 3517 1.926561 TCTTGGCATGAGATCGAACG 58.073 50.000 0.00 0.00 0.00 3.95
3486 3531 1.153289 CTCCCAGTGCCGATCTTGG 60.153 63.158 0.00 0.00 0.00 3.61
3487 3532 1.817099 GCTCCCAGTGCCGATCTTG 60.817 63.158 0.00 0.00 0.00 3.02
3488 3533 1.992277 AGCTCCCAGTGCCGATCTT 60.992 57.895 0.00 0.00 0.00 2.40
3489 3534 2.364842 AGCTCCCAGTGCCGATCT 60.365 61.111 0.00 0.00 0.00 2.75
3490 3535 2.202987 CAGCTCCCAGTGCCGATC 60.203 66.667 0.00 0.00 0.00 3.69
3491 3536 3.790437 CCAGCTCCCAGTGCCGAT 61.790 66.667 0.00 0.00 0.00 4.18
3494 3539 3.875510 AAAGCCAGCTCCCAGTGCC 62.876 63.158 0.00 0.00 0.00 5.01
3495 3540 1.871126 GAAAAGCCAGCTCCCAGTGC 61.871 60.000 0.00 0.00 0.00 4.40
3496 3541 1.580845 CGAAAAGCCAGCTCCCAGTG 61.581 60.000 0.00 0.00 0.00 3.66
3497 3542 1.302832 CGAAAAGCCAGCTCCCAGT 60.303 57.895 0.00 0.00 0.00 4.00
3498 3543 2.042831 CCGAAAAGCCAGCTCCCAG 61.043 63.158 0.00 0.00 0.00 4.45
3499 3544 2.034066 CCGAAAAGCCAGCTCCCA 59.966 61.111 0.00 0.00 0.00 4.37
3500 3545 2.041115 GTCCGAAAAGCCAGCTCCC 61.041 63.158 0.00 0.00 0.00 4.30
3501 3546 2.391389 CGTCCGAAAAGCCAGCTCC 61.391 63.158 0.00 0.00 0.00 4.70
3502 3547 1.228657 AACGTCCGAAAAGCCAGCTC 61.229 55.000 0.00 0.00 0.00 4.09
3503 3548 0.818040 AAACGTCCGAAAAGCCAGCT 60.818 50.000 0.00 0.00 0.00 4.24
3504 3549 0.030235 AAAACGTCCGAAAAGCCAGC 59.970 50.000 0.00 0.00 0.00 4.85
3505 3550 2.485266 AAAAACGTCCGAAAAGCCAG 57.515 45.000 0.00 0.00 0.00 4.85
3523 3568 0.460987 CGCTGGGTGCCAAACAAAAA 60.461 50.000 0.00 0.00 38.78 1.94
3524 3569 1.142748 CGCTGGGTGCCAAACAAAA 59.857 52.632 0.00 0.00 38.78 2.44
3525 3570 2.811101 CGCTGGGTGCCAAACAAA 59.189 55.556 0.00 0.00 38.78 2.83
3526 3571 3.910490 GCGCTGGGTGCCAAACAA 61.910 61.111 0.00 0.00 38.78 2.83
3528 3573 4.645921 GTGCGCTGGGTGCCAAAC 62.646 66.667 9.73 0.00 38.39 2.93
3538 3583 4.781959 CATTTGCCGGGTGCGCTG 62.782 66.667 9.73 0.00 45.60 5.18
3551 3596 2.223226 GCACAAACGCAAAAAGGCATTT 60.223 40.909 0.00 0.00 27.84 2.32
3552 3597 1.330213 GCACAAACGCAAAAAGGCATT 59.670 42.857 0.00 0.00 0.00 3.56
3553 3598 0.936600 GCACAAACGCAAAAAGGCAT 59.063 45.000 0.00 0.00 0.00 4.40
3554 3599 0.108424 AGCACAAACGCAAAAAGGCA 60.108 45.000 0.00 0.00 0.00 4.75
3555 3600 0.301388 CAGCACAAACGCAAAAAGGC 59.699 50.000 0.00 0.00 0.00 4.35
3556 3601 1.587946 GTCAGCACAAACGCAAAAAGG 59.412 47.619 0.00 0.00 0.00 3.11
3557 3602 1.252524 CGTCAGCACAAACGCAAAAAG 59.747 47.619 0.00 0.00 31.48 2.27
3558 3603 1.263776 CGTCAGCACAAACGCAAAAA 58.736 45.000 0.00 0.00 31.48 1.94
3559 3604 0.524392 CCGTCAGCACAAACGCAAAA 60.524 50.000 0.00 0.00 37.56 2.44
3560 3605 1.063327 CCGTCAGCACAAACGCAAA 59.937 52.632 0.00 0.00 37.56 3.68
3561 3606 1.649390 AACCGTCAGCACAAACGCAA 61.649 50.000 0.00 0.00 37.56 4.85
3562 3607 1.649390 AAACCGTCAGCACAAACGCA 61.649 50.000 0.00 0.00 37.56 5.24
3563 3608 0.524604 AAAACCGTCAGCACAAACGC 60.525 50.000 0.00 0.00 37.56 4.84
3564 3609 1.902840 AAAAACCGTCAGCACAAACG 58.097 45.000 0.00 0.00 38.58 3.60
3588 3633 0.107654 GAAACTCGATCACCCCCAGG 60.108 60.000 0.00 0.00 40.04 4.45
3589 3634 0.107654 GGAAACTCGATCACCCCCAG 60.108 60.000 0.00 0.00 0.00 4.45
3590 3635 0.838554 TGGAAACTCGATCACCCCCA 60.839 55.000 0.00 0.00 0.00 4.96
3591 3636 0.107654 CTGGAAACTCGATCACCCCC 60.108 60.000 0.00 0.00 0.00 5.40
3592 3637 0.744771 GCTGGAAACTCGATCACCCC 60.745 60.000 0.00 0.00 0.00 4.95
3593 3638 0.744771 GGCTGGAAACTCGATCACCC 60.745 60.000 0.00 0.00 0.00 4.61
3594 3639 1.084370 CGGCTGGAAACTCGATCACC 61.084 60.000 0.00 0.00 0.00 4.02
3595 3640 1.696832 GCGGCTGGAAACTCGATCAC 61.697 60.000 0.00 0.00 0.00 3.06
3596 3641 1.447838 GCGGCTGGAAACTCGATCA 60.448 57.895 0.00 0.00 0.00 2.92
3597 3642 2.517450 CGCGGCTGGAAACTCGATC 61.517 63.158 0.00 0.00 0.00 3.69
3598 3643 2.509336 CGCGGCTGGAAACTCGAT 60.509 61.111 0.00 0.00 0.00 3.59
3611 3656 3.131478 CAAAACCTAGGGGCGCGG 61.131 66.667 14.81 0.00 35.63 6.46
3612 3657 3.131478 CCAAAACCTAGGGGCGCG 61.131 66.667 14.81 0.00 35.63 6.86
3613 3658 3.449227 GCCAAAACCTAGGGGCGC 61.449 66.667 14.81 0.00 36.58 6.53
3615 3660 2.363795 GGGCCAAAACCTAGGGGC 60.364 66.667 14.81 15.67 45.67 5.80
3616 3661 2.362963 GGGGCCAAAACCTAGGGG 59.637 66.667 14.81 5.51 38.88 4.79
3617 3662 2.362963 GGGGGCCAAAACCTAGGG 59.637 66.667 14.81 0.00 0.00 3.53
3618 3663 2.044352 CGGGGGCCAAAACCTAGG 60.044 66.667 7.41 7.41 0.00 3.02
3619 3664 2.044352 CCGGGGGCCAAAACCTAG 60.044 66.667 4.39 0.00 0.00 3.02
3620 3665 2.532199 TCCGGGGGCCAAAACCTA 60.532 61.111 4.39 0.00 0.00 3.08
3621 3666 4.295199 GTCCGGGGGCCAAAACCT 62.295 66.667 4.39 0.00 0.00 3.50
3630 3675 4.978705 TTTTTGGGCGTCCGGGGG 62.979 66.667 0.00 0.00 35.24 5.40
3631 3676 2.220615 GAATTTTTGGGCGTCCGGGG 62.221 60.000 0.00 0.00 35.24 5.73
3632 3677 1.214325 GAATTTTTGGGCGTCCGGG 59.786 57.895 0.00 0.00 35.24 5.73
3633 3678 1.154112 CGAATTTTTGGGCGTCCGG 60.154 57.895 0.00 0.00 35.24 5.14
3634 3679 0.238817 TTCGAATTTTTGGGCGTCCG 59.761 50.000 0.00 0.00 35.24 4.79
3635 3680 1.268625 AGTTCGAATTTTTGGGCGTCC 59.731 47.619 0.00 0.00 0.00 4.79
3636 3681 2.699251 AGTTCGAATTTTTGGGCGTC 57.301 45.000 0.00 0.00 0.00 5.19
3637 3682 2.100087 ACAAGTTCGAATTTTTGGGCGT 59.900 40.909 18.16 5.77 0.00 5.68
3638 3683 2.724174 GACAAGTTCGAATTTTTGGGCG 59.276 45.455 18.16 5.27 0.00 6.13
3639 3684 3.977427 AGACAAGTTCGAATTTTTGGGC 58.023 40.909 18.16 6.11 0.00 5.36
3640 3685 5.462068 GGAAAGACAAGTTCGAATTTTTGGG 59.538 40.000 18.16 6.11 0.00 4.12
3641 3686 5.462068 GGGAAAGACAAGTTCGAATTTTTGG 59.538 40.000 18.16 6.39 0.00 3.28
3642 3687 5.173131 CGGGAAAGACAAGTTCGAATTTTTG 59.827 40.000 0.00 9.51 0.00 2.44
3643 3688 5.278604 CGGGAAAGACAAGTTCGAATTTTT 58.721 37.500 0.00 0.00 0.00 1.94
3644 3689 4.791734 GCGGGAAAGACAAGTTCGAATTTT 60.792 41.667 0.00 0.00 0.00 1.82
3645 3690 3.304458 GCGGGAAAGACAAGTTCGAATTT 60.304 43.478 0.00 0.00 0.00 1.82
3646 3691 2.225727 GCGGGAAAGACAAGTTCGAATT 59.774 45.455 0.00 0.00 0.00 2.17
3647 3692 1.804748 GCGGGAAAGACAAGTTCGAAT 59.195 47.619 0.00 0.00 0.00 3.34
3648 3693 1.202604 AGCGGGAAAGACAAGTTCGAA 60.203 47.619 0.00 0.00 0.00 3.71
3649 3694 0.391597 AGCGGGAAAGACAAGTTCGA 59.608 50.000 0.00 0.00 0.00 3.71
3650 3695 0.512952 CAGCGGGAAAGACAAGTTCG 59.487 55.000 0.00 0.00 0.00 3.95
3651 3696 0.238553 GCAGCGGGAAAGACAAGTTC 59.761 55.000 0.00 0.00 0.00 3.01
3652 3697 1.172812 GGCAGCGGGAAAGACAAGTT 61.173 55.000 0.00 0.00 0.00 2.66
3653 3698 1.600916 GGCAGCGGGAAAGACAAGT 60.601 57.895 0.00 0.00 0.00 3.16
3654 3699 1.172180 TTGGCAGCGGGAAAGACAAG 61.172 55.000 0.00 0.00 0.00 3.16
3655 3700 0.753479 TTTGGCAGCGGGAAAGACAA 60.753 50.000 0.00 0.00 0.00 3.18
3656 3701 0.753479 TTTTGGCAGCGGGAAAGACA 60.753 50.000 0.00 0.00 0.00 3.41
3657 3702 0.387565 TTTTTGGCAGCGGGAAAGAC 59.612 50.000 0.00 0.00 0.00 3.01
3658 3703 2.814023 TTTTTGGCAGCGGGAAAGA 58.186 47.368 0.00 0.00 0.00 2.52
3673 3718 2.811431 TGATCGCCGAATCTGTGTTTTT 59.189 40.909 0.00 0.00 0.00 1.94
3674 3719 2.422597 TGATCGCCGAATCTGTGTTTT 58.577 42.857 0.00 0.00 0.00 2.43
3675 3720 2.093306 TGATCGCCGAATCTGTGTTT 57.907 45.000 0.00 0.00 0.00 2.83
3676 3721 2.205074 GATGATCGCCGAATCTGTGTT 58.795 47.619 0.00 0.00 0.00 3.32
3677 3722 1.136891 TGATGATCGCCGAATCTGTGT 59.863 47.619 0.00 0.00 0.00 3.72
3678 3723 1.856802 TGATGATCGCCGAATCTGTG 58.143 50.000 0.00 0.00 0.00 3.66
3679 3724 2.410939 CATGATGATCGCCGAATCTGT 58.589 47.619 0.00 0.00 0.00 3.41
3680 3725 1.128136 GCATGATGATCGCCGAATCTG 59.872 52.381 0.00 0.00 0.00 2.90
3681 3726 1.436600 GCATGATGATCGCCGAATCT 58.563 50.000 0.00 0.00 0.00 2.40
3682 3727 0.445436 GGCATGATGATCGCCGAATC 59.555 55.000 0.00 0.00 35.79 2.52
3683 3728 2.548178 GGCATGATGATCGCCGAAT 58.452 52.632 0.00 0.00 35.79 3.34
3684 3729 4.047834 GGCATGATGATCGCCGAA 57.952 55.556 0.00 0.00 35.79 4.30
3687 3732 0.309922 CTTGTGGCATGATGATCGCC 59.690 55.000 0.00 4.62 46.43 5.54
3688 3733 1.003116 GACTTGTGGCATGATGATCGC 60.003 52.381 0.00 0.00 0.00 4.58
3689 3734 1.259770 CGACTTGTGGCATGATGATCG 59.740 52.381 0.00 0.00 0.00 3.69
3690 3735 1.600957 CCGACTTGTGGCATGATGATC 59.399 52.381 0.00 0.00 0.00 2.92
3691 3736 1.671979 CCGACTTGTGGCATGATGAT 58.328 50.000 0.00 0.00 0.00 2.45
3692 3737 3.157727 CCGACTTGTGGCATGATGA 57.842 52.632 0.00 0.00 0.00 2.92
3700 3745 0.460109 TGATGATCGCCGACTTGTGG 60.460 55.000 0.00 0.00 0.00 4.17
3701 3746 1.259770 CATGATGATCGCCGACTTGTG 59.740 52.381 0.00 0.00 0.00 3.33
3702 3747 1.575244 CATGATGATCGCCGACTTGT 58.425 50.000 0.00 0.00 0.00 3.16
3703 3748 0.234106 GCATGATGATCGCCGACTTG 59.766 55.000 0.00 0.00 0.00 3.16
3704 3749 0.882042 GGCATGATGATCGCCGACTT 60.882 55.000 0.00 0.00 35.79 3.01
3705 3750 1.301244 GGCATGATGATCGCCGACT 60.301 57.895 0.00 0.00 35.79 4.18
3706 3751 3.248029 GGCATGATGATCGCCGAC 58.752 61.111 0.00 0.00 35.79 4.79
3709 3754 1.512996 CCTGTGGCATGATGATCGCC 61.513 60.000 0.00 4.62 46.43 5.54
3710 3755 0.816825 ACCTGTGGCATGATGATCGC 60.817 55.000 0.00 0.00 0.00 4.58
3711 3756 1.224075 GACCTGTGGCATGATGATCG 58.776 55.000 0.00 0.00 0.00 3.69
3712 3757 1.224075 CGACCTGTGGCATGATGATC 58.776 55.000 0.00 0.00 0.00 2.92
3713 3758 0.179037 CCGACCTGTGGCATGATGAT 60.179 55.000 0.00 0.00 0.00 2.45
3714 3759 1.221566 CCGACCTGTGGCATGATGA 59.778 57.895 0.00 0.00 0.00 2.92
3715 3760 1.078214 ACCGACCTGTGGCATGATG 60.078 57.895 0.00 0.00 0.00 3.07
3716 3761 1.078214 CACCGACCTGTGGCATGAT 60.078 57.895 0.00 0.00 32.50 2.45
3717 3762 1.552799 ATCACCGACCTGTGGCATGA 61.553 55.000 0.00 0.00 36.87 3.07
3718 3763 1.078214 ATCACCGACCTGTGGCATG 60.078 57.895 0.00 0.00 36.87 4.06
3719 3764 1.221840 GATCACCGACCTGTGGCAT 59.778 57.895 0.00 0.00 36.87 4.40
3720 3765 1.763546 TTGATCACCGACCTGTGGCA 61.764 55.000 0.00 0.00 36.87 4.92
3721 3766 0.605319 TTTGATCACCGACCTGTGGC 60.605 55.000 0.00 0.00 36.87 5.01
3722 3767 1.535462 GTTTTGATCACCGACCTGTGG 59.465 52.381 0.00 0.00 36.87 4.17
3723 3768 2.217750 TGTTTTGATCACCGACCTGTG 58.782 47.619 0.00 0.00 37.59 3.66
3724 3769 2.631160 TGTTTTGATCACCGACCTGT 57.369 45.000 0.00 0.00 0.00 4.00
3725 3770 3.374058 GGTATGTTTTGATCACCGACCTG 59.626 47.826 0.00 0.00 0.00 4.00
3726 3771 3.606687 GGTATGTTTTGATCACCGACCT 58.393 45.455 0.00 0.00 0.00 3.85
3727 3772 2.681344 GGGTATGTTTTGATCACCGACC 59.319 50.000 0.00 0.00 0.00 4.79
3728 3773 3.340034 TGGGTATGTTTTGATCACCGAC 58.660 45.455 0.00 0.00 0.00 4.79
3729 3774 3.704800 TGGGTATGTTTTGATCACCGA 57.295 42.857 0.00 0.00 0.00 4.69
3730 3775 4.775058 TTTGGGTATGTTTTGATCACCG 57.225 40.909 0.00 0.00 0.00 4.94
3731 3776 6.096673 ACTTTTGGGTATGTTTTGATCACC 57.903 37.500 0.00 0.00 0.00 4.02
3732 3777 6.362283 CGAACTTTTGGGTATGTTTTGATCAC 59.638 38.462 0.00 0.00 0.00 3.06
3733 3778 6.442952 CGAACTTTTGGGTATGTTTTGATCA 58.557 36.000 0.00 0.00 0.00 2.92
3734 3779 5.861787 CCGAACTTTTGGGTATGTTTTGATC 59.138 40.000 0.00 0.00 0.00 2.92
3735 3780 5.778862 CCGAACTTTTGGGTATGTTTTGAT 58.221 37.500 0.00 0.00 0.00 2.57
3736 3781 4.500035 GCCGAACTTTTGGGTATGTTTTGA 60.500 41.667 0.00 0.00 32.00 2.69
3737 3782 3.738791 GCCGAACTTTTGGGTATGTTTTG 59.261 43.478 0.00 0.00 32.00 2.44
3738 3783 3.551250 CGCCGAACTTTTGGGTATGTTTT 60.551 43.478 0.00 0.00 32.00 2.43
3739 3784 2.030628 CGCCGAACTTTTGGGTATGTTT 60.031 45.455 0.00 0.00 32.00 2.83
3740 3785 1.538075 CGCCGAACTTTTGGGTATGTT 59.462 47.619 0.00 0.00 32.00 2.71
3741 3786 1.161843 CGCCGAACTTTTGGGTATGT 58.838 50.000 0.00 0.00 32.00 2.29
3742 3787 1.129811 GTCGCCGAACTTTTGGGTATG 59.870 52.381 0.00 0.00 32.00 2.39
3743 3788 1.445871 GTCGCCGAACTTTTGGGTAT 58.554 50.000 0.00 0.00 32.00 2.73
3744 3789 0.603439 GGTCGCCGAACTTTTGGGTA 60.603 55.000 0.00 0.00 32.00 3.69
3745 3790 1.895231 GGTCGCCGAACTTTTGGGT 60.895 57.895 0.00 0.00 32.00 4.51
3746 3791 1.852067 CTGGTCGCCGAACTTTTGGG 61.852 60.000 2.87 0.00 32.00 4.12
3747 3792 1.574428 CTGGTCGCCGAACTTTTGG 59.426 57.895 2.87 0.00 34.66 3.28
3748 3793 0.882927 TCCTGGTCGCCGAACTTTTG 60.883 55.000 2.87 0.00 0.00 2.44
3749 3794 0.179040 TTCCTGGTCGCCGAACTTTT 60.179 50.000 2.87 0.00 0.00 2.27
3750 3795 0.602905 CTTCCTGGTCGCCGAACTTT 60.603 55.000 2.87 0.00 0.00 2.66
3751 3796 1.004918 CTTCCTGGTCGCCGAACTT 60.005 57.895 2.87 0.00 0.00 2.66
3752 3797 2.657237 CTTCCTGGTCGCCGAACT 59.343 61.111 2.87 0.00 0.00 3.01
3753 3798 2.434359 CCTTCCTGGTCGCCGAAC 60.434 66.667 0.00 0.00 0.00 3.95
3754 3799 1.550130 ATTCCTTCCTGGTCGCCGAA 61.550 55.000 0.00 0.00 37.07 4.30
3755 3800 1.956629 GATTCCTTCCTGGTCGCCGA 61.957 60.000 0.00 0.00 37.07 5.54
3756 3801 1.521681 GATTCCTTCCTGGTCGCCG 60.522 63.158 0.00 0.00 37.07 6.46
3757 3802 0.181350 ATGATTCCTTCCTGGTCGCC 59.819 55.000 0.00 0.00 37.07 5.54
3758 3803 2.365617 TCTATGATTCCTTCCTGGTCGC 59.634 50.000 0.00 0.00 37.07 5.19
3759 3804 3.384789 TGTCTATGATTCCTTCCTGGTCG 59.615 47.826 0.00 0.00 37.07 4.79
3760 3805 5.303971 CATGTCTATGATTCCTTCCTGGTC 58.696 45.833 0.00 0.00 36.36 4.02
3761 3806 4.103785 CCATGTCTATGATTCCTTCCTGGT 59.896 45.833 0.00 0.00 36.36 4.00
3762 3807 4.349048 TCCATGTCTATGATTCCTTCCTGG 59.651 45.833 0.00 0.00 36.36 4.45
3763 3808 5.557576 TCCATGTCTATGATTCCTTCCTG 57.442 43.478 0.00 0.00 36.36 3.86
3764 3809 5.453903 CGTTCCATGTCTATGATTCCTTCCT 60.454 44.000 0.00 0.00 36.36 3.36
3765 3810 4.752101 CGTTCCATGTCTATGATTCCTTCC 59.248 45.833 0.00 0.00 36.36 3.46
3766 3811 4.212214 GCGTTCCATGTCTATGATTCCTTC 59.788 45.833 0.00 0.00 36.36 3.46
3767 3812 4.130118 GCGTTCCATGTCTATGATTCCTT 58.870 43.478 0.00 0.00 36.36 3.36
3768 3813 3.134623 TGCGTTCCATGTCTATGATTCCT 59.865 43.478 0.00 0.00 36.36 3.36
3769 3814 3.466836 TGCGTTCCATGTCTATGATTCC 58.533 45.455 0.00 0.00 36.36 3.01
3770 3815 4.751600 TGATGCGTTCCATGTCTATGATTC 59.248 41.667 0.00 0.00 36.36 2.52
3771 3816 4.707105 TGATGCGTTCCATGTCTATGATT 58.293 39.130 0.00 0.00 36.36 2.57
3772 3817 4.341366 TGATGCGTTCCATGTCTATGAT 57.659 40.909 0.00 0.00 36.36 2.45
3773 3818 3.817709 TGATGCGTTCCATGTCTATGA 57.182 42.857 0.00 0.00 36.36 2.15
3774 3819 4.591202 GTTTGATGCGTTCCATGTCTATG 58.409 43.478 0.00 0.00 33.29 2.23
3775 3820 3.309682 CGTTTGATGCGTTCCATGTCTAT 59.690 43.478 0.00 0.00 33.29 1.98
3776 3821 2.670905 CGTTTGATGCGTTCCATGTCTA 59.329 45.455 0.00 0.00 33.29 2.59
3777 3822 1.464608 CGTTTGATGCGTTCCATGTCT 59.535 47.619 0.00 0.00 33.29 3.41
3778 3823 1.196808 ACGTTTGATGCGTTCCATGTC 59.803 47.619 0.00 0.00 39.79 3.06
3779 3824 1.069296 CACGTTTGATGCGTTCCATGT 60.069 47.619 0.00 0.00 40.90 3.21
3780 3825 1.605500 CACGTTTGATGCGTTCCATG 58.394 50.000 0.00 0.00 40.90 3.66
3781 3826 0.521291 CCACGTTTGATGCGTTCCAT 59.479 50.000 0.00 0.00 40.90 3.41
3782 3827 1.511318 CCCACGTTTGATGCGTTCCA 61.511 55.000 0.00 0.00 40.90 3.53
3783 3828 1.209127 CCCACGTTTGATGCGTTCC 59.791 57.895 0.00 0.00 40.90 3.62
3784 3829 0.110373 GTCCCACGTTTGATGCGTTC 60.110 55.000 0.00 0.00 40.90 3.95
3785 3830 0.534203 AGTCCCACGTTTGATGCGTT 60.534 50.000 0.00 0.00 40.90 4.84
3786 3831 1.070786 AGTCCCACGTTTGATGCGT 59.929 52.632 0.00 0.00 43.90 5.24
3787 3832 1.497278 CAGTCCCACGTTTGATGCG 59.503 57.895 0.00 0.00 0.00 4.73
3788 3833 0.889186 ACCAGTCCCACGTTTGATGC 60.889 55.000 0.00 0.00 0.00 3.91
3789 3834 1.156736 GACCAGTCCCACGTTTGATG 58.843 55.000 0.00 0.00 0.00 3.07
3790 3835 0.320421 CGACCAGTCCCACGTTTGAT 60.320 55.000 0.00 0.00 0.00 2.57
3791 3836 1.068417 CGACCAGTCCCACGTTTGA 59.932 57.895 0.00 0.00 0.00 2.69
3792 3837 1.959226 CCGACCAGTCCCACGTTTG 60.959 63.158 0.00 0.00 0.00 2.93
3793 3838 2.424302 CCGACCAGTCCCACGTTT 59.576 61.111 0.00 0.00 0.00 3.60
3794 3839 3.622826 CCCGACCAGTCCCACGTT 61.623 66.667 0.00 0.00 0.00 3.99
3797 3842 3.246880 AACCCCGACCAGTCCCAC 61.247 66.667 0.00 0.00 0.00 4.61
3798 3843 3.246112 CAACCCCGACCAGTCCCA 61.246 66.667 0.00 0.00 0.00 4.37
3799 3844 4.029809 CCAACCCCGACCAGTCCC 62.030 72.222 0.00 0.00 0.00 4.46
3800 3845 3.246880 ACCAACCCCGACCAGTCC 61.247 66.667 0.00 0.00 0.00 3.85
3801 3846 2.032071 CACCAACCCCGACCAGTC 59.968 66.667 0.00 0.00 0.00 3.51
3802 3847 2.770904 ACACCAACCCCGACCAGT 60.771 61.111 0.00 0.00 0.00 4.00
3803 3848 2.032071 GACACCAACCCCGACCAG 59.968 66.667 0.00 0.00 0.00 4.00
3804 3849 3.931247 CGACACCAACCCCGACCA 61.931 66.667 0.00 0.00 0.00 4.02
3824 3869 3.357079 CACTGAAGCCACGCCCAC 61.357 66.667 0.00 0.00 0.00 4.61
3827 3872 3.426568 GAGCACTGAAGCCACGCC 61.427 66.667 0.00 0.00 34.23 5.68
3828 3873 2.666190 TGAGCACTGAAGCCACGC 60.666 61.111 0.00 0.00 34.23 5.34
3829 3874 2.031516 CCTGAGCACTGAAGCCACG 61.032 63.158 0.00 0.00 34.23 4.94
3830 3875 2.331132 GCCTGAGCACTGAAGCCAC 61.331 63.158 0.00 0.00 39.53 5.01
3831 3876 2.033141 GCCTGAGCACTGAAGCCA 59.967 61.111 0.00 0.00 39.53 4.75
3832 3877 1.744741 GAGCCTGAGCACTGAAGCC 60.745 63.158 0.00 0.00 43.56 4.35
3833 3878 2.099431 CGAGCCTGAGCACTGAAGC 61.099 63.158 0.00 0.00 43.56 3.86
3834 3879 1.447489 CCGAGCCTGAGCACTGAAG 60.447 63.158 0.00 0.00 43.56 3.02
3835 3880 2.659016 CCGAGCCTGAGCACTGAA 59.341 61.111 0.00 0.00 43.56 3.02
3836 3881 4.074526 GCCGAGCCTGAGCACTGA 62.075 66.667 0.00 0.00 43.56 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.