Multiple sequence alignment - TraesCS7A01G300600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G300600 chr7A 100.000 3350 0 0 1 3350 417741500 417744849 0.000000e+00 6187.0
1 TraesCS7A01G300600 chr7A 92.801 2028 126 11 707 2720 408844734 408846755 0.000000e+00 2918.0
2 TraesCS7A01G300600 chr7A 92.286 713 41 11 1 710 408830693 408831394 0.000000e+00 1000.0
3 TraesCS7A01G300600 chr7A 91.641 646 36 4 2714 3350 408846831 408847467 0.000000e+00 878.0
4 TraesCS7A01G300600 chr2B 92.162 2743 184 20 1 2720 298693072 298690338 0.000000e+00 3845.0
5 TraesCS7A01G300600 chr2B 92.263 1564 104 6 1170 2720 262726873 262725314 0.000000e+00 2202.0
6 TraesCS7A01G300600 chr2B 93.760 641 32 2 2718 3350 298690258 298689618 0.000000e+00 955.0
7 TraesCS7A01G300600 chr2B 92.415 646 40 3 2714 3350 262725239 262724594 0.000000e+00 913.0
8 TraesCS7A01G300600 chr2B 91.343 670 47 11 1 665 262727760 262727097 0.000000e+00 905.0
9 TraesCS7A01G300600 chr2B 80.262 917 153 18 1826 2720 31596430 31597340 0.000000e+00 665.0
10 TraesCS7A01G300600 chr2B 86.720 497 55 11 178 670 529540496 529540007 2.940000e-150 542.0
11 TraesCS7A01G300600 chr2B 91.346 208 17 1 946 1152 543857184 543857391 1.970000e-72 283.0
12 TraesCS7A01G300600 chr2B 91.346 208 17 1 946 1152 544287307 544287514 1.970000e-72 283.0
13 TraesCS7A01G300600 chr2B 90.132 152 14 1 2784 2935 262725315 262725165 2.640000e-46 196.0
14 TraesCS7A01G300600 chr1A 91.557 1753 111 7 946 2686 308954596 308956323 0.000000e+00 2383.0
15 TraesCS7A01G300600 chr1A 92.724 646 36 5 2714 3350 308956390 308957033 0.000000e+00 922.0
16 TraesCS7A01G300600 chr1A 91.045 670 49 10 1 668 308953831 308954491 0.000000e+00 894.0
17 TraesCS7A01G300600 chr1A 88.406 345 32 6 1 339 308953648 308953990 3.110000e-110 409.0
18 TraesCS7A01G300600 chr7B 92.651 1456 85 11 1 1446 361025655 361027098 0.000000e+00 2076.0
19 TraesCS7A01G300600 chr7B 91.169 804 60 5 1768 2560 361028253 361029056 0.000000e+00 1081.0
20 TraesCS7A01G300600 chr7B 93.302 642 35 2 2717 3350 361061623 361062264 0.000000e+00 941.0
21 TraesCS7A01G300600 chr7B 85.714 518 61 13 178 690 571566554 571567063 4.920000e-148 534.0
22 TraesCS7A01G300600 chr7B 93.281 253 14 1 1523 1772 361027100 361027352 1.470000e-98 370.0
23 TraesCS7A01G300600 chr7B 91.324 219 17 1 945 1163 357824753 357824537 7.030000e-77 298.0
24 TraesCS7A01G300600 chr7B 94.079 152 6 3 1 151 142537434 142537285 9.350000e-56 228.0
25 TraesCS7A01G300600 chr7B 86.184 152 20 1 2784 2935 361061543 361061693 2.670000e-36 163.0
26 TraesCS7A01G300600 chr7B 88.235 51 5 1 2732 2781 361061797 361061847 3.610000e-05 60.2
27 TraesCS7A01G300600 chr4B 89.531 917 84 6 1816 2720 399511541 399512457 0.000000e+00 1151.0
28 TraesCS7A01G300600 chr4B 88.499 513 52 3 1100 1610 399510673 399511180 6.140000e-172 614.0
29 TraesCS7A01G300600 chr4B 85.910 511 54 17 166 670 399501753 399502251 2.290000e-146 529.0
30 TraesCS7A01G300600 chr4B 90.333 300 23 1 2718 3011 399512692 399512991 4.050000e-104 388.0
31 TraesCS7A01G300600 chr4B 90.367 218 19 1 946 1163 558544593 558544808 5.470000e-73 285.0
32 TraesCS7A01G300600 chr4B 88.285 239 18 5 2714 2944 399512533 399512769 9.150000e-71 278.0
33 TraesCS7A01G300600 chr4B 95.364 151 6 1 1 151 251365322 251365471 4.320000e-59 239.0
34 TraesCS7A01G300600 chr4B 89.595 173 16 2 3179 3350 399513415 399513586 5.630000e-53 219.0
35 TraesCS7A01G300600 chr4B 90.099 101 8 1 1608 1706 399511338 399511438 2.710000e-26 130.0
36 TraesCS7A01G300600 chr4B 86.076 79 4 2 2718 2789 399512846 399512924 9.970000e-11 78.7
37 TraesCS7A01G300600 chr5D 78.702 878 165 19 1860 2720 90294521 90293649 1.740000e-157 566.0
38 TraesCS7A01G300600 chr3D 78.855 856 161 17 1860 2699 419621823 419622674 8.120000e-156 560.0
39 TraesCS7A01G300600 chrUn 94.079 152 6 3 1 151 301924149 301924000 9.350000e-56 228.0
40 TraesCS7A01G300600 chr6B 89.444 180 19 0 973 1152 356835714 356835893 9.350000e-56 228.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G300600 chr7A 417741500 417744849 3349 False 6187.000000 6187 100.000000 1 3350 1 chr7A.!!$F2 3349
1 TraesCS7A01G300600 chr7A 408844734 408847467 2733 False 1898.000000 2918 92.221000 707 3350 2 chr7A.!!$F3 2643
2 TraesCS7A01G300600 chr7A 408830693 408831394 701 False 1000.000000 1000 92.286000 1 710 1 chr7A.!!$F1 709
3 TraesCS7A01G300600 chr2B 298689618 298693072 3454 True 2400.000000 3845 92.961000 1 3350 2 chr2B.!!$R3 3349
4 TraesCS7A01G300600 chr2B 262724594 262727760 3166 True 1054.000000 2202 91.538250 1 3350 4 chr2B.!!$R2 3349
5 TraesCS7A01G300600 chr2B 31596430 31597340 910 False 665.000000 665 80.262000 1826 2720 1 chr2B.!!$F1 894
6 TraesCS7A01G300600 chr1A 308953648 308957033 3385 False 1152.000000 2383 90.933000 1 3350 4 chr1A.!!$F1 3349
7 TraesCS7A01G300600 chr7B 361025655 361029056 3401 False 1175.666667 2076 92.367000 1 2560 3 chr7B.!!$F2 2559
8 TraesCS7A01G300600 chr7B 571566554 571567063 509 False 534.000000 534 85.714000 178 690 1 chr7B.!!$F1 512
9 TraesCS7A01G300600 chr7B 361061543 361062264 721 False 388.066667 941 89.240333 2717 3350 3 chr7B.!!$F3 633
10 TraesCS7A01G300600 chr4B 399510673 399513586 2913 False 408.385714 1151 88.916857 1100 3350 7 chr4B.!!$F4 2250
11 TraesCS7A01G300600 chr5D 90293649 90294521 872 True 566.000000 566 78.702000 1860 2720 1 chr5D.!!$R1 860
12 TraesCS7A01G300600 chr3D 419621823 419622674 851 False 560.000000 560 78.855000 1860 2699 1 chr3D.!!$F1 839

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
364 567 0.390124 AGGTGCCTTTGTTGTGCATG 59.610 50.0 0.00 0.0 37.34 4.06 F
1073 1325 0.249911 AGCGGCTCTGACGAAAACTT 60.250 50.0 0.00 0.0 35.20 2.66 F
1275 1527 0.322816 ATGAAGGCGCTCACACCATT 60.323 50.0 7.64 0.0 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1721 2153 1.102978 AAAATAGACCGGCCATGTGC 58.897 50.000 0.00 0.00 40.16 4.57 R
1896 3233 1.413118 TCTCCTTCATGCGCCTATGA 58.587 50.000 4.18 5.48 35.38 2.15 R
2378 3736 1.535462 GCGAACATGCCTTACACAACT 59.465 47.619 0.00 0.00 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 5.537188 CCACTATGATGAGAGAGTAAAGCC 58.463 45.833 0.00 0.00 0.00 4.35
80 82 7.206687 TGGTTGTATTCTTTTAGCAAGTTTGG 58.793 34.615 0.00 0.00 0.00 3.28
88 275 7.106439 TCTTTTAGCAAGTTTGGAAACATGA 57.894 32.000 10.78 0.00 39.28 3.07
129 316 5.657745 TCTGGCCATGCATATATTTATTGGG 59.342 40.000 5.51 0.00 0.00 4.12
130 317 5.587861 TGGCCATGCATATATTTATTGGGA 58.412 37.500 0.00 0.00 0.00 4.37
364 567 0.390124 AGGTGCCTTTGTTGTGCATG 59.610 50.000 0.00 0.00 37.34 4.06
391 594 6.326843 AGGGAGTTATAGGGATCAACAAGTAC 59.673 42.308 0.00 0.00 0.00 2.73
509 712 7.833285 ACAAGGATAGTCTATCTCCTTCTTC 57.167 40.000 17.50 1.19 45.43 2.87
510 713 7.591821 ACAAGGATAGTCTATCTCCTTCTTCT 58.408 38.462 17.50 3.25 45.43 2.85
511 714 7.724061 ACAAGGATAGTCTATCTCCTTCTTCTC 59.276 40.741 17.50 0.00 45.43 2.87
512 715 7.648177 AGGATAGTCTATCTCCTTCTTCTCT 57.352 40.000 17.50 2.02 35.90 3.10
523 726 3.772572 TCCTTCTTCTCTCTCTCTCTCGA 59.227 47.826 0.00 0.00 0.00 4.04
553 756 1.598130 GTGGTGACAGAGGCGCTTT 60.598 57.895 7.64 0.00 44.46 3.51
658 861 6.091849 TCGATCTTGCATCTCTTCTCTTTTTG 59.908 38.462 0.00 0.00 0.00 2.44
670 874 3.146066 TCTCTTTTTGTGGTGATTCCCG 58.854 45.455 0.00 0.00 34.77 5.14
682 886 3.244422 GGTGATTCCCGTCATATTGGCTA 60.244 47.826 0.00 0.00 0.00 3.93
819 1043 2.842462 ACCGGTGGTGTGCTCTCA 60.842 61.111 6.12 0.00 32.98 3.27
882 1106 3.887621 TCGTTATCCTTTCCTGACCTG 57.112 47.619 0.00 0.00 0.00 4.00
892 1116 4.263506 CCTTTCCTGACCTGGATGTTTACT 60.264 45.833 0.00 0.00 35.83 2.24
896 1120 4.020218 TCCTGACCTGGATGTTTACTCTTG 60.020 45.833 0.00 0.00 0.00 3.02
907 1131 7.776030 TGGATGTTTACTCTTGTTTTTCCTACA 59.224 33.333 0.00 0.00 0.00 2.74
913 1137 5.445964 ACTCTTGTTTTTCCTACACCATGT 58.554 37.500 0.00 0.00 0.00 3.21
935 1159 6.626302 TGTTGATTTCGTGTTCTTCCTTTTT 58.374 32.000 0.00 0.00 0.00 1.94
994 1218 2.181021 GTAGGTCAGTGCGACGGG 59.819 66.667 0.00 0.00 46.42 5.28
1056 1308 3.567797 GATGGAAGCGCCGACAGC 61.568 66.667 2.29 0.00 40.66 4.40
1073 1325 0.249911 AGCGGCTCTGACGAAAACTT 60.250 50.000 0.00 0.00 35.20 2.66
1110 1362 1.826096 GGATCGGGTTATAGCTCCTCC 59.174 57.143 0.00 0.00 0.00 4.30
1154 1406 4.033009 TCTGATGGAGTGGTGTACATCAT 58.967 43.478 12.91 1.33 45.87 2.45
1172 1424 3.382278 TCATCTCTGATGAAGGGAAGCT 58.618 45.455 7.68 0.00 39.47 3.74
1176 1428 4.550669 TCTCTGATGAAGGGAAGCTCATA 58.449 43.478 0.00 0.00 30.01 2.15
1199 1451 3.834813 AGCTCTGATGAAGGTGAGTACAA 59.165 43.478 0.00 0.00 0.00 2.41
1200 1452 4.469227 AGCTCTGATGAAGGTGAGTACAAT 59.531 41.667 0.00 0.00 0.00 2.71
1247 1499 3.055312 AGCTCTGATGAAGACATGAGCAA 60.055 43.478 17.92 0.00 46.11 3.91
1275 1527 0.322816 ATGAAGGCGCTCACACCATT 60.323 50.000 7.64 0.00 0.00 3.16
1301 1554 6.511121 CGTGCTAAAGGTATCATATGCGTTTT 60.511 38.462 0.00 0.00 35.28 2.43
1410 1663 1.211212 TGCATGTCTGATGGAAGGGAG 59.789 52.381 0.00 0.00 0.00 4.30
1502 1755 6.375377 CAATTTTGGATTGTTGCTGATTTGG 58.625 36.000 0.00 0.00 0.00 3.28
1504 1757 1.275856 TGGATTGTTGCTGATTTGGCC 59.724 47.619 0.00 0.00 0.00 5.36
1513 1766 3.814625 TGCTGATTTGGCCGAATATGTA 58.185 40.909 18.67 10.58 0.00 2.29
1518 1771 4.022416 TGATTTGGCCGAATATGTATTGGC 60.022 41.667 18.67 3.44 38.24 4.52
1519 1772 2.647683 TGGCCGAATATGTATTGGCA 57.352 45.000 18.84 10.02 39.47 4.92
1619 2033 8.668653 TGGGAATACCACAGATCATATGTATTT 58.331 33.333 1.90 0.00 46.80 1.40
1629 2043 6.986231 CAGATCATATGTATTTAGCGGGCATA 59.014 38.462 1.90 0.00 0.00 3.14
1632 2046 6.054941 TCATATGTATTTAGCGGGCATATGG 58.945 40.000 17.35 0.00 44.33 2.74
1667 2081 3.993920 TCTTTTCAAAAGGCAATGGCTC 58.006 40.909 10.47 0.00 37.50 4.70
1721 2153 8.798859 TTGATTGATAAGAGAAAGAAGAAGGG 57.201 34.615 0.00 0.00 0.00 3.95
1896 3233 3.758554 GCCTGTTCAATGATGTAGGTGTT 59.241 43.478 8.88 0.00 0.00 3.32
2378 3736 6.286758 GTGAAGATTCAGCTATCATCTGGAA 58.713 40.000 0.00 0.00 37.98 3.53
2433 3791 2.849943 TGGACAACAGGGCTACCATAAT 59.150 45.455 0.00 0.00 40.13 1.28
2703 4063 9.330220 AGGGCATGTATATATATCTATGCATGA 57.670 33.333 28.03 5.36 46.53 3.07
2720 4080 9.539825 CTATGCATGAGTATAGTTTCAAGTCTT 57.460 33.333 10.16 0.00 36.18 3.01
2822 4425 1.270041 GCATGGACTCTAGCTAGGTGC 60.270 57.143 20.58 20.10 43.29 5.01
2982 4585 9.906660 TGTTTTAAGGTATCAAGTATTTTGCAG 57.093 29.630 0.00 0.00 0.00 4.41
3047 4747 2.725221 AGGAAAGGATAGCAAGCCTG 57.275 50.000 0.00 0.00 42.00 4.85
3103 4803 5.279406 CCCTGGCTGATGTTGAAATTGTTAA 60.279 40.000 0.00 0.00 0.00 2.01
3117 4819 6.481644 TGAAATTGTTAAACAGCCCATTGTTC 59.518 34.615 0.00 0.00 40.24 3.18
3184 4886 2.756760 AGACGAGGCCGAAGTTATTGTA 59.243 45.455 0.00 0.00 39.50 2.41
3191 5050 6.036300 CGAGGCCGAAGTTATTGTATTAACAA 59.964 38.462 0.00 0.00 43.28 2.83
3242 5101 8.751302 AACCCATACATTTTGAATAAAACGAC 57.249 30.769 0.00 0.00 38.50 4.34
3314 5173 7.284489 TGGTCTAAACAGAAAGCAAAAGTACAT 59.716 33.333 0.00 0.00 0.00 2.29
3331 5190 6.620877 AGTACATCTTGGTTCATTACTCCA 57.379 37.500 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 4.142491 TGCTAAAAGAATACAACCATGCCG 60.142 41.667 0.00 0.00 0.00 5.69
88 275 7.606135 TGGCCAGATTTTTCATCATGATAAT 57.394 32.000 8.15 4.47 0.00 1.28
195 390 3.689161 TCATCATAGTGGCCGTTTTTCAG 59.311 43.478 0.00 0.00 0.00 3.02
203 398 1.959985 ACTCTCTCATCATAGTGGCCG 59.040 52.381 0.00 0.00 0.00 6.13
364 567 6.326843 ACTTGTTGATCCCTATAACTCCCTAC 59.673 42.308 0.00 0.00 0.00 3.18
415 618 2.735772 CGCTCTATGTGGGCTGGGT 61.736 63.158 0.00 0.00 0.00 4.51
489 692 7.690256 AGAGAGAAGAAGGAGATAGACTATCC 58.310 42.308 17.23 6.45 35.79 2.59
523 726 1.421268 TGTCACCACCAGCTGAGAAAT 59.579 47.619 17.39 0.00 0.00 2.17
658 861 2.878406 CCAATATGACGGGAATCACCAC 59.122 50.000 0.00 0.00 41.20 4.16
705 929 3.572642 AGAGGGGAAAACGAACCAAAAT 58.427 40.909 0.00 0.00 0.00 1.82
819 1043 2.117156 GGACGCCATTGCAGCAGAT 61.117 57.895 0.00 0.00 37.32 2.90
882 1106 8.074370 GTGTAGGAAAAACAAGAGTAAACATCC 58.926 37.037 0.00 0.00 0.00 3.51
892 1116 5.888724 TCAACATGGTGTAGGAAAAACAAGA 59.111 36.000 11.27 0.00 0.00 3.02
896 1120 6.362283 CGAAATCAACATGGTGTAGGAAAAAC 59.638 38.462 11.27 0.00 0.00 2.43
907 1131 4.023193 GGAAGAACACGAAATCAACATGGT 60.023 41.667 0.00 0.00 0.00 3.55
935 1159 6.159299 TCAAAACAATGGCAATGAAGAGAA 57.841 33.333 10.01 0.00 0.00 2.87
994 1218 2.865079 TCGAGATCCCCTCATACTCAC 58.135 52.381 0.00 0.00 42.06 3.51
1056 1308 0.512952 CCAAGTTTTCGTCAGAGCCG 59.487 55.000 0.00 0.00 0.00 5.52
1073 1325 0.906282 TCCATCTGAGCTGCTGTCCA 60.906 55.000 7.01 0.00 0.00 4.02
1110 1362 3.008157 AGCTCATGGATGCTCCTTCATAG 59.992 47.826 0.00 0.00 37.46 2.23
1122 1374 2.369203 CACTCCATCAGAGCTCATGGAT 59.631 50.000 27.37 18.77 46.12 3.41
1154 1406 2.825223 TGAGCTTCCCTTCATCAGAGA 58.175 47.619 0.00 0.00 0.00 3.10
1172 1424 4.713814 ACTCACCTTCATCAGAGCTTATGA 59.286 41.667 5.18 5.18 0.00 2.15
1176 1428 3.834813 TGTACTCACCTTCATCAGAGCTT 59.165 43.478 0.00 0.00 0.00 3.74
1199 1451 1.476007 GGCGCCCTCATCTGGACTAT 61.476 60.000 18.11 0.00 0.00 2.12
1200 1452 2.134287 GGCGCCCTCATCTGGACTA 61.134 63.158 18.11 0.00 0.00 2.59
1247 1499 1.449246 GCGCCTTCATCAGAGCTGT 60.449 57.895 0.00 0.00 0.00 4.40
1275 1527 4.234574 CGCATATGATACCTTTAGCACGA 58.765 43.478 6.97 0.00 0.00 4.35
1301 1554 8.598916 TCCCACAAACTACAAAATATCTCACTA 58.401 33.333 0.00 0.00 0.00 2.74
1366 1619 8.352201 GCATACTGACTTTTGGCATAATCAATA 58.648 33.333 0.00 0.00 36.50 1.90
1410 1663 7.272978 TCTACTTCTATTCCTAACAATGCCAC 58.727 38.462 0.00 0.00 0.00 5.01
1502 1755 4.568152 AAACTGCCAATACATATTCGGC 57.432 40.909 13.68 13.68 43.28 5.54
1504 1757 7.915397 AGCTTAAAAACTGCCAATACATATTCG 59.085 33.333 0.00 0.00 0.00 3.34
1513 1766 9.559732 AAGAATAAAAGCTTAAAAACTGCCAAT 57.440 25.926 0.00 0.00 0.00 3.16
1629 2043 5.248020 TGAAAAGAAAATACATGTGGCCCAT 59.752 36.000 9.11 0.00 0.00 4.00
1632 2046 7.307930 CCTTTTGAAAAGAAAATACATGTGGCC 60.308 37.037 18.59 0.00 0.00 5.36
1721 2153 1.102978 AAAATAGACCGGCCATGTGC 58.897 50.000 0.00 0.00 40.16 4.57
1795 3132 5.930837 TTCTGAATTCTGGTGTTGGTTTT 57.069 34.783 11.89 0.00 0.00 2.43
1857 3194 8.871629 TGAACAGGCCAAGAAAATATAAGTTA 57.128 30.769 5.01 0.00 0.00 2.24
1896 3233 1.413118 TCTCCTTCATGCGCCTATGA 58.587 50.000 4.18 5.48 35.38 2.15
2116 3471 6.623486 TCAACTGATTCAACATAATGCTTGG 58.377 36.000 0.00 0.00 0.00 3.61
2156 3511 7.977789 TGTCTTATTCAGCTCACAAACATAA 57.022 32.000 0.00 0.00 0.00 1.90
2378 3736 1.535462 GCGAACATGCCTTACACAACT 59.465 47.619 0.00 0.00 0.00 3.16
2433 3791 2.554344 GCAAAGTGACCCCAGTTCCATA 60.554 50.000 0.00 0.00 35.01 2.74
2621 3981 1.753956 CGTTGTAAGCACCTGCAAAC 58.246 50.000 0.00 0.00 45.16 2.93
2990 4593 9.905713 TGCTAGATACTACAATTTCTTTTCCAT 57.094 29.630 0.00 0.00 0.00 3.41
3026 4726 3.073650 CCAGGCTTGCTATCCTTTCCTAT 59.926 47.826 0.00 0.00 0.00 2.57
3047 4747 5.113383 CAACCAAACTAAAAGAAACCACCC 58.887 41.667 0.00 0.00 0.00 4.61
3184 4886 7.549488 GTCTGTGCCTACTACATTCTTGTTAAT 59.451 37.037 0.00 0.00 37.28 1.40
3191 5050 4.283467 TGTTGTCTGTGCCTACTACATTCT 59.717 41.667 0.00 0.00 0.00 2.40
3242 5101 4.402793 ACCTATGTACTTGAGCACTACTGG 59.597 45.833 0.00 0.00 0.00 4.00
3314 5173 4.299586 TGCATGGAGTAATGAACCAAGA 57.700 40.909 0.00 0.00 37.24 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.