Multiple sequence alignment - TraesCS7A01G299500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G299500 chr7A 100.000 5375 0 0 1 5375 409881526 409876152 0.000000e+00 9926.0
1 TraesCS7A01G299500 chr7D 93.855 3271 143 19 352 3578 370175542 370178798 0.000000e+00 4874.0
2 TraesCS7A01G299500 chr7D 95.575 1808 60 15 3575 5375 370178827 370180621 0.000000e+00 2878.0
3 TraesCS7A01G299500 chr7D 94.737 57 3 0 294 350 370175460 370175516 7.410000e-14 89.8
4 TraesCS7A01G299500 chr7B 96.633 2732 70 10 865 3578 317226859 317229586 0.000000e+00 4516.0
5 TraesCS7A01G299500 chr7B 96.848 1047 27 3 3575 4619 317229615 317230657 0.000000e+00 1746.0
6 TraesCS7A01G299500 chr7B 95.667 600 21 4 4781 5375 317230793 317231392 0.000000e+00 959.0
7 TraesCS7A01G299500 chr7B 83.966 711 76 14 144 821 317223446 317224151 0.000000e+00 647.0
8 TraesCS7A01G299500 chr7B 92.800 125 2 1 4605 4729 317230676 317230793 1.990000e-39 174.0
9 TraesCS7A01G299500 chr2A 95.946 74 3 0 3789 3862 135275642 135275569 2.630000e-23 121.0
10 TraesCS7A01G299500 chr1A 93.443 61 4 0 3789 3849 558021238 558021178 2.060000e-14 91.6
11 TraesCS7A01G299500 chr1A 100.000 30 0 0 115 144 149864224 149864253 7.520000e-04 56.5
12 TraesCS7A01G299500 chr6A 100.000 29 0 0 322 350 3771366 3771394 3.000000e-03 54.7
13 TraesCS7A01G299500 chr2B 100.000 28 0 0 323 350 763470611 763470584 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G299500 chr7A 409876152 409881526 5374 True 9926.000000 9926 100.000000 1 5375 1 chr7A.!!$R1 5374
1 TraesCS7A01G299500 chr7D 370175460 370180621 5161 False 2613.933333 4874 94.722333 294 5375 3 chr7D.!!$F1 5081
2 TraesCS7A01G299500 chr7B 317223446 317231392 7946 False 1608.400000 4516 93.182800 144 5375 5 chr7B.!!$F1 5231

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
101 102 0.034574 CCCAATGACAATGGTCCCGA 60.035 55.000 8.73 0.00 43.65 5.14 F
1775 4483 0.034059 CCTCCTCACCATATGTCGGC 59.966 60.000 1.24 0.00 0.00 5.54 F
2314 5049 1.137825 CGTCCGAGCTCCAGAGTTC 59.862 63.158 8.47 1.71 35.64 3.01 F
4203 6987 0.537143 TGGAAGAAACTGCCACGCAT 60.537 50.000 0.00 0.00 33.50 4.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1981 4689 1.003839 TTGCCATCGACAGGACCAC 60.004 57.895 9.80 0.0 0.00 4.16 R
3118 5866 4.504858 AGTTTCTACAGTTATTCCGCCTG 58.495 43.478 0.00 0.0 0.00 4.85 R
4250 7034 0.773644 AGCCACTCCATCCAAAGTGT 59.226 50.000 2.24 0.0 41.04 3.55 R
5222 8046 1.281419 TGATTACCAGCCTTCCCGAA 58.719 50.000 0.00 0.0 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.864334 GCCTGGTGCGGGATGAGG 62.864 72.222 0.00 0.00 29.82 3.86
20 21 3.083349 CCTGGTGCGGGATGAGGA 61.083 66.667 0.00 0.00 29.82 3.71
21 22 2.187946 CTGGTGCGGGATGAGGAC 59.812 66.667 0.00 0.00 0.00 3.85
22 23 3.723235 CTGGTGCGGGATGAGGACG 62.723 68.421 0.00 0.00 0.00 4.79
28 29 3.224324 GGGATGAGGACGCCGCTA 61.224 66.667 1.93 0.00 0.00 4.26
29 30 2.336809 GGATGAGGACGCCGCTAG 59.663 66.667 1.93 0.00 0.00 3.42
30 31 2.336809 GATGAGGACGCCGCTAGG 59.663 66.667 0.00 0.00 41.62 3.02
44 45 2.117640 TAGGCGGGCCTAGCTAGG 59.882 66.667 32.12 32.12 46.14 3.02
52 53 2.259818 CCTAGCTAGGCCATCGCG 59.740 66.667 26.62 0.00 36.53 5.87
53 54 2.431601 CTAGCTAGGCCATCGCGC 60.432 66.667 13.32 0.00 35.02 6.86
54 55 2.912542 TAGCTAGGCCATCGCGCT 60.913 61.111 5.01 7.51 35.02 5.92
55 56 2.427540 CTAGCTAGGCCATCGCGCTT 62.428 60.000 13.32 0.00 35.02 4.68
56 57 2.028125 TAGCTAGGCCATCGCGCTTT 62.028 55.000 5.01 0.00 35.02 3.51
57 58 2.886782 GCTAGGCCATCGCGCTTTC 61.887 63.158 5.01 0.00 35.02 2.62
58 59 2.584970 TAGGCCATCGCGCTTTCG 60.585 61.111 5.01 0.00 35.02 3.46
59 60 3.365291 TAGGCCATCGCGCTTTCGT 62.365 57.895 5.01 0.00 38.14 3.85
60 61 4.520846 GGCCATCGCGCTTTCGTG 62.521 66.667 5.56 0.00 46.68 4.35
61 62 4.520846 GCCATCGCGCTTTCGTGG 62.521 66.667 5.56 7.41 45.48 4.94
62 63 3.864686 CCATCGCGCTTTCGTGGG 61.865 66.667 5.56 0.00 45.48 4.61
63 64 3.118454 CATCGCGCTTTCGTGGGT 61.118 61.111 5.56 0.00 45.48 4.51
64 65 1.807981 CATCGCGCTTTCGTGGGTA 60.808 57.895 5.56 0.00 45.48 3.69
65 66 1.808390 ATCGCGCTTTCGTGGGTAC 60.808 57.895 5.56 0.00 45.48 3.34
74 75 4.424566 CGTGGGTACGGGGTGACG 62.425 72.222 0.00 0.00 46.23 4.35
75 76 2.990967 GTGGGTACGGGGTGACGA 60.991 66.667 0.00 0.00 37.61 4.20
76 77 2.203611 TGGGTACGGGGTGACGAA 60.204 61.111 0.00 0.00 37.61 3.85
77 78 1.836158 TGGGTACGGGGTGACGAAA 60.836 57.895 0.00 0.00 37.61 3.46
78 79 1.079612 GGGTACGGGGTGACGAAAG 60.080 63.158 0.00 0.00 37.61 2.62
79 80 1.535204 GGGTACGGGGTGACGAAAGA 61.535 60.000 0.00 0.00 37.61 2.52
80 81 0.533951 GGTACGGGGTGACGAAAGAT 59.466 55.000 0.00 0.00 37.61 2.40
81 82 1.636988 GTACGGGGTGACGAAAGATG 58.363 55.000 0.00 0.00 37.61 2.90
82 83 0.108520 TACGGGGTGACGAAAGATGC 60.109 55.000 0.00 0.00 37.61 3.91
83 84 2.106683 CGGGGTGACGAAAGATGCC 61.107 63.158 0.00 0.00 35.47 4.40
84 85 1.749258 GGGGTGACGAAAGATGCCC 60.749 63.158 0.00 0.00 37.66 5.36
85 86 1.002624 GGGTGACGAAAGATGCCCA 60.003 57.895 0.00 0.00 38.04 5.36
86 87 0.608035 GGGTGACGAAAGATGCCCAA 60.608 55.000 0.00 0.00 38.04 4.12
87 88 1.463674 GGTGACGAAAGATGCCCAAT 58.536 50.000 0.00 0.00 0.00 3.16
88 89 1.133025 GGTGACGAAAGATGCCCAATG 59.867 52.381 0.00 0.00 0.00 2.82
89 90 2.083774 GTGACGAAAGATGCCCAATGA 58.916 47.619 0.00 0.00 0.00 2.57
90 91 2.083774 TGACGAAAGATGCCCAATGAC 58.916 47.619 0.00 0.00 0.00 3.06
91 92 2.083774 GACGAAAGATGCCCAATGACA 58.916 47.619 0.00 0.00 0.00 3.58
92 93 2.487762 GACGAAAGATGCCCAATGACAA 59.512 45.455 0.00 0.00 0.00 3.18
93 94 3.091545 ACGAAAGATGCCCAATGACAAT 58.908 40.909 0.00 0.00 0.00 2.71
94 95 3.119388 ACGAAAGATGCCCAATGACAATG 60.119 43.478 0.00 0.00 0.00 2.82
95 96 3.735820 CGAAAGATGCCCAATGACAATGG 60.736 47.826 2.20 2.20 37.71 3.16
96 97 2.537633 AGATGCCCAATGACAATGGT 57.462 45.000 8.73 0.00 36.14 3.55
97 98 2.381911 AGATGCCCAATGACAATGGTC 58.618 47.619 8.73 0.00 44.57 4.02
98 99 1.410153 GATGCCCAATGACAATGGTCC 59.590 52.381 8.73 0.31 43.65 4.46
99 100 0.614415 TGCCCAATGACAATGGTCCC 60.614 55.000 8.73 0.00 43.65 4.46
100 101 1.666209 GCCCAATGACAATGGTCCCG 61.666 60.000 8.73 0.00 43.65 5.14
101 102 0.034574 CCCAATGACAATGGTCCCGA 60.035 55.000 8.73 0.00 43.65 5.14
102 103 1.382522 CCAATGACAATGGTCCCGAG 58.617 55.000 0.93 0.00 43.65 4.63
103 104 0.734889 CAATGACAATGGTCCCGAGC 59.265 55.000 0.00 0.00 43.65 5.03
104 105 0.744414 AATGACAATGGTCCCGAGCG 60.744 55.000 0.00 0.00 43.65 5.03
105 106 1.899437 ATGACAATGGTCCCGAGCGT 61.899 55.000 0.00 0.00 43.65 5.07
106 107 2.047274 ACAATGGTCCCGAGCGTG 60.047 61.111 0.00 0.00 0.00 5.34
107 108 3.499737 CAATGGTCCCGAGCGTGC 61.500 66.667 0.00 0.00 0.00 5.34
108 109 3.706373 AATGGTCCCGAGCGTGCT 61.706 61.111 0.00 0.00 0.00 4.40
109 110 3.958147 AATGGTCCCGAGCGTGCTG 62.958 63.158 0.00 0.00 0.00 4.41
115 116 4.988598 CCGAGCGTGCTGGGTTGT 62.989 66.667 14.06 0.00 37.20 3.32
116 117 3.414700 CGAGCGTGCTGGGTTGTC 61.415 66.667 0.00 0.00 0.00 3.18
117 118 3.050275 GAGCGTGCTGGGTTGTCC 61.050 66.667 0.00 0.00 0.00 4.02
118 119 3.825160 GAGCGTGCTGGGTTGTCCA 62.825 63.158 0.00 0.00 44.79 4.02
119 120 3.660111 GCGTGCTGGGTTGTCCAC 61.660 66.667 0.00 0.00 41.46 4.02
120 121 2.111043 CGTGCTGGGTTGTCCACT 59.889 61.111 0.00 0.00 41.46 4.00
121 122 1.961277 CGTGCTGGGTTGTCCACTC 60.961 63.158 0.00 0.00 41.46 3.51
122 123 1.961277 GTGCTGGGTTGTCCACTCG 60.961 63.158 0.00 0.00 41.46 4.18
123 124 2.426023 GCTGGGTTGTCCACTCGT 59.574 61.111 0.00 0.00 41.46 4.18
124 125 1.668151 GCTGGGTTGTCCACTCGTC 60.668 63.158 0.00 0.00 41.46 4.20
125 126 1.745890 CTGGGTTGTCCACTCGTCA 59.254 57.895 0.00 0.00 41.46 4.35
126 127 0.321671 CTGGGTTGTCCACTCGTCAT 59.678 55.000 0.00 0.00 41.46 3.06
127 128 0.034756 TGGGTTGTCCACTCGTCATG 59.965 55.000 0.00 0.00 41.46 3.07
128 129 0.673644 GGGTTGTCCACTCGTCATGG 60.674 60.000 0.00 0.00 38.71 3.66
129 130 0.320374 GGTTGTCCACTCGTCATGGA 59.680 55.000 0.00 1.64 44.20 3.41
132 133 4.531351 TCCACTCGTCATGGACCA 57.469 55.556 0.00 0.00 41.47 4.02
133 134 1.972198 TCCACTCGTCATGGACCAC 59.028 57.895 0.00 0.00 41.47 4.16
134 135 0.541998 TCCACTCGTCATGGACCACT 60.542 55.000 0.00 0.00 41.47 4.00
135 136 0.108615 CCACTCGTCATGGACCACTC 60.109 60.000 0.00 0.00 39.87 3.51
136 137 0.603065 CACTCGTCATGGACCACTCA 59.397 55.000 0.00 0.00 0.00 3.41
137 138 0.891373 ACTCGTCATGGACCACTCAG 59.109 55.000 0.00 0.00 0.00 3.35
138 139 0.459237 CTCGTCATGGACCACTCAGC 60.459 60.000 0.00 0.00 0.00 4.26
139 140 1.448540 CGTCATGGACCACTCAGCC 60.449 63.158 0.00 0.00 0.00 4.85
140 141 1.448540 GTCATGGACCACTCAGCCG 60.449 63.158 0.00 0.00 0.00 5.52
141 142 2.124983 CATGGACCACTCAGCCGG 60.125 66.667 0.00 0.00 0.00 6.13
142 143 3.402681 ATGGACCACTCAGCCGGG 61.403 66.667 2.18 0.00 0.00 5.73
161 162 0.460459 GTCGCTGGTAGAGAAAGGCC 60.460 60.000 0.00 0.00 0.00 5.19
164 165 1.901085 CTGGTAGAGAAAGGCCGCT 59.099 57.895 0.00 0.00 0.00 5.52
204 205 1.377202 CCAATGACTGTGACCCCGG 60.377 63.158 0.00 0.00 0.00 5.73
208 209 3.717294 GACTGTGACCCCGGGCAT 61.717 66.667 17.73 4.67 0.00 4.40
237 238 2.588877 CACCCATCATCGTCCGGC 60.589 66.667 0.00 0.00 0.00 6.13
238 239 3.861797 ACCCATCATCGTCCGGCC 61.862 66.667 0.00 0.00 0.00 6.13
252 253 4.767255 GGCCAGGCAGGTGAGTCG 62.767 72.222 15.19 0.00 40.61 4.18
256 257 2.118513 AGGCAGGTGAGTCGAGGT 59.881 61.111 0.00 0.00 0.00 3.85
308 309 2.014128 CGCCTAATAATAATGGCCCCG 58.986 52.381 0.00 0.00 42.15 5.73
406 431 4.073200 GGCAAGCCAGCCGCAAAT 62.073 61.111 6.14 0.00 46.12 2.32
442 467 2.045536 CTCACCCTCAAGCAGCCC 60.046 66.667 0.00 0.00 0.00 5.19
478 503 5.359194 CATTAGGTACTCATGTGGTCCTT 57.641 43.478 14.77 0.81 41.75 3.36
479 504 5.360591 CATTAGGTACTCATGTGGTCCTTC 58.639 45.833 14.77 0.00 41.75 3.46
502 527 7.302350 TCGTATGGTGTTTTGAATCAGTATG 57.698 36.000 0.00 0.00 37.54 2.39
540 565 9.534565 GTCTGCAATTCTAGATGACTAAACATA 57.465 33.333 0.00 0.00 0.00 2.29
675 705 3.659786 TGAAATGACGTTCGTGGAAGAT 58.340 40.909 1.74 0.00 0.00 2.40
751 787 6.465948 AGCATCAATTTTCTTTTGCCACATA 58.534 32.000 0.00 0.00 0.00 2.29
755 791 8.937884 CATCAATTTTCTTTTGCCACATATTCA 58.062 29.630 0.00 0.00 0.00 2.57
762 798 6.757237 TCTTTTGCCACATATTCAACAATGT 58.243 32.000 0.00 0.00 36.78 2.71
769 805 7.284944 TGCCACATATTCAACAATGTCATATGA 59.715 33.333 18.94 0.00 36.19 2.15
772 808 9.620660 CACATATTCAACAATGTCATATGATGG 57.379 33.333 18.94 1.87 36.19 3.51
792 828 8.749841 TGATGGTGAAATTTTACAAATTACCG 57.250 30.769 14.30 0.00 0.00 4.02
844 880 6.455360 AATGTCATATGGTGGTGAAATGAC 57.545 37.500 2.13 6.77 44.23 3.06
847 883 4.394920 GTCATATGGTGGTGAAATGACGTT 59.605 41.667 2.13 0.00 37.70 3.99
848 884 5.007034 TCATATGGTGGTGAAATGACGTTT 58.993 37.500 2.13 0.00 0.00 3.60
849 885 6.092944 GTCATATGGTGGTGAAATGACGTTTA 59.907 38.462 2.13 0.00 37.70 2.01
850 886 4.759516 ATGGTGGTGAAATGACGTTTAC 57.240 40.909 0.00 0.00 0.00 2.01
851 887 3.542648 TGGTGGTGAAATGACGTTTACA 58.457 40.909 0.00 0.00 0.00 2.41
882 3585 0.458370 TCGCGTCCAGATGTCACATG 60.458 55.000 5.77 0.00 0.00 3.21
933 3636 1.613836 AAGTCACCGTACTTCTCCGT 58.386 50.000 0.00 0.00 34.60 4.69
945 3648 6.040878 CGTACTTCTCCGTTTCCTCAATTAT 58.959 40.000 0.00 0.00 0.00 1.28
1127 3833 2.271173 CCCTTTCCAGTACCGCCC 59.729 66.667 0.00 0.00 0.00 6.13
1128 3834 2.125269 CCTTTCCAGTACCGCCCG 60.125 66.667 0.00 0.00 0.00 6.13
1185 3891 5.775195 CCCCACCTTTTTCTTGTTATTCTCT 59.225 40.000 0.00 0.00 0.00 3.10
1218 3924 0.112412 ATTCCGGTTCTTGGCTGGTT 59.888 50.000 0.00 0.00 34.14 3.67
1272 3978 3.877508 GCCGCTGGATTAATCTAGTTGTT 59.122 43.478 24.62 0.00 37.66 2.83
1350 4056 2.487532 CGGTCTGGGGTAGTAGGCG 61.488 68.421 0.00 0.00 0.00 5.52
1426 4132 6.901300 ACCCTCTCAGTCACCACTAATTTATA 59.099 38.462 0.00 0.00 0.00 0.98
1525 4233 1.229428 ACGTGCCAGTCATCTGTTTG 58.771 50.000 0.00 0.00 39.82 2.93
1775 4483 0.034059 CCTCCTCACCATATGTCGGC 59.966 60.000 1.24 0.00 0.00 5.54
1795 4503 4.036734 CGGCATAACATCCAATTACAAGCT 59.963 41.667 0.00 0.00 0.00 3.74
1875 4583 5.484998 AGGCCACCAAATAAAACATCAGAAT 59.515 36.000 5.01 0.00 0.00 2.40
1969 4677 4.038522 TGAAAAAGAAACATCATCCCGCAA 59.961 37.500 0.00 0.00 0.00 4.85
1981 4689 5.247507 TCATCCCGCAATTTACAATTCAG 57.752 39.130 0.00 0.00 0.00 3.02
2201 4936 5.179368 TCGTCTGTCTCCATTTGATGTTTTC 59.821 40.000 0.00 0.00 0.00 2.29
2234 4969 5.189736 TGCTACCCAGTCAACTAATCAAGAT 59.810 40.000 0.00 0.00 0.00 2.40
2314 5049 1.137825 CGTCCGAGCTCCAGAGTTC 59.862 63.158 8.47 1.71 35.64 3.01
2462 5197 4.619760 CAGTATGCAGCAAAATGTGAACTG 59.380 41.667 0.00 0.17 0.00 3.16
2479 5214 2.576615 ACTGGAGCAGAAACACCTTTC 58.423 47.619 0.00 0.00 36.73 2.62
2570 5305 5.486526 TCGATTGGGAAATCAAAAATTGGG 58.513 37.500 0.00 0.00 0.00 4.12
2737 5472 2.279582 TTCTCAAGGCGATCGAGAAC 57.720 50.000 21.57 5.34 40.06 3.01
2827 5562 6.612863 TCCTCCTTGAATCAGTGATTGATAGA 59.387 38.462 22.93 12.56 45.82 1.98
2870 5605 9.968870 ATAAAATAAGAAAGGTGCGTTGTTTTA 57.031 25.926 0.00 0.00 33.11 1.52
3118 5866 5.967674 CGATGTTATTGCCTGATTTGTTCTC 59.032 40.000 0.00 0.00 0.00 2.87
3143 5891 6.421202 CAGGCGGAATAACTGTAGAAACTATC 59.579 42.308 0.00 0.00 0.00 2.08
3193 5942 7.067494 GCAGATATATGGTCTCTGGTTTTTGTT 59.933 37.037 0.00 0.00 37.47 2.83
3287 6038 7.445096 CAGTAATATGATATTTGCAGTGACCCA 59.555 37.037 2.64 0.00 0.00 4.51
3305 6056 7.500227 AGTGACCCAATGATAATTGTGTATCTG 59.500 37.037 2.00 0.00 32.58 2.90
3366 6117 1.508088 GCCAAAGGCTCCACATTCG 59.492 57.895 0.00 0.00 46.69 3.34
4002 6786 7.649533 TTTGAGTACCGATCCAAGTAATCTA 57.350 36.000 11.55 4.46 35.25 1.98
4064 6848 3.312697 GGAGCAAGAAACGGTCAATATCC 59.687 47.826 0.00 0.00 32.48 2.59
4176 6960 2.487532 GCAGCATGGCCATGTCCTC 61.488 63.158 39.08 25.76 40.80 3.71
4203 6987 0.537143 TGGAAGAAACTGCCACGCAT 60.537 50.000 0.00 0.00 33.50 4.73
4205 6989 1.160137 GAAGAAACTGCCACGCATCT 58.840 50.000 0.00 0.00 38.13 2.90
4250 7034 3.754965 CTTGTCAAGGGTTGAATGGAGA 58.245 45.455 4.52 0.00 42.15 3.71
4371 7155 1.625818 ACTGAAGAAATCGGCTGGAGT 59.374 47.619 0.00 0.00 38.03 3.85
4375 7159 2.393271 AGAAATCGGCTGGAGTTGAG 57.607 50.000 0.00 0.00 32.15 3.02
4386 7170 1.424493 GGAGTTGAGCGAATCTGCCG 61.424 60.000 0.00 0.00 34.65 5.69
4455 7239 4.832823 CAGGGATTCTGGTTACCTTTTTGT 59.167 41.667 2.07 0.00 39.76 2.83
4461 7245 5.004922 TCTGGTTACCTTTTTGTTTGCTG 57.995 39.130 2.07 0.00 0.00 4.41
4642 7461 1.811266 CTGACGGAGGGATTGTGCG 60.811 63.158 0.00 0.00 34.52 5.34
4666 7485 1.480954 GGATTCAGAGCCTAACGGACA 59.519 52.381 0.00 0.00 0.00 4.02
4667 7486 2.103263 GGATTCAGAGCCTAACGGACAT 59.897 50.000 0.00 0.00 0.00 3.06
4668 7487 2.672961 TTCAGAGCCTAACGGACATG 57.327 50.000 0.00 0.00 0.00 3.21
4669 7488 1.557099 TCAGAGCCTAACGGACATGT 58.443 50.000 0.00 0.00 0.00 3.21
4670 7489 1.204704 TCAGAGCCTAACGGACATGTG 59.795 52.381 1.15 0.00 0.00 3.21
4671 7490 0.537188 AGAGCCTAACGGACATGTGG 59.463 55.000 1.15 0.00 0.00 4.17
4672 7491 0.462047 GAGCCTAACGGACATGTGGG 60.462 60.000 1.15 0.00 0.00 4.61
4724 7543 4.318021 CTGTGCGCCTGTGTGTGC 62.318 66.667 4.18 0.00 42.05 4.57
4765 7584 4.083324 GCTGTAATGTGTGAAAGCAGCTAA 60.083 41.667 0.00 0.00 42.92 3.09
4777 7596 7.286087 TGTGAAAGCAGCTAATGAAATGGATAT 59.714 33.333 0.00 0.00 0.00 1.63
4779 7598 9.006839 TGAAAGCAGCTAATGAAATGGATATAG 57.993 33.333 0.00 0.00 0.00 1.31
4822 7641 2.829914 GCCCATGCGCAGATCCAA 60.830 61.111 18.32 0.00 0.00 3.53
4937 7760 7.948357 TCTCGTGTATATACATAAAGCAAGGT 58.052 34.615 18.27 0.00 38.63 3.50
5127 7951 7.009174 GGCAAGCATTAACATACAACACATAAC 59.991 37.037 0.00 0.00 0.00 1.89
5226 8050 8.798153 GCAATTTCTTGAAAATACACTATTCGG 58.202 33.333 0.00 0.00 34.04 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.100084 TCATCCCGCACCAGGCTG 62.100 66.667 7.75 7.75 41.67 4.85
1 2 3.790437 CTCATCCCGCACCAGGCT 61.790 66.667 0.00 0.00 41.67 4.58
2 3 4.864334 CCTCATCCCGCACCAGGC 62.864 72.222 0.00 0.00 39.90 4.85
3 4 3.083349 TCCTCATCCCGCACCAGG 61.083 66.667 0.00 0.00 0.00 4.45
4 5 2.187946 GTCCTCATCCCGCACCAG 59.812 66.667 0.00 0.00 0.00 4.00
5 6 3.770040 CGTCCTCATCCCGCACCA 61.770 66.667 0.00 0.00 0.00 4.17
11 12 3.214250 CTAGCGGCGTCCTCATCCC 62.214 68.421 9.37 0.00 0.00 3.85
12 13 2.336809 CTAGCGGCGTCCTCATCC 59.663 66.667 9.37 0.00 0.00 3.51
13 14 2.336809 CCTAGCGGCGTCCTCATC 59.663 66.667 9.37 0.00 0.00 2.92
27 28 2.117640 CCTAGCTAGGCCCGCCTA 59.882 66.667 26.62 14.63 46.14 3.93
35 36 2.259818 CGCGATGGCCTAGCTAGG 59.740 66.667 32.12 32.12 46.42 3.02
36 37 2.427540 AAGCGCGATGGCCTAGCTAG 62.428 60.000 12.10 14.20 33.13 3.42
37 38 2.028125 AAAGCGCGATGGCCTAGCTA 62.028 55.000 12.10 0.00 33.13 3.32
38 39 3.391665 AAAGCGCGATGGCCTAGCT 62.392 57.895 12.10 4.67 35.31 3.32
39 40 2.886782 GAAAGCGCGATGGCCTAGC 61.887 63.158 12.10 5.90 35.02 3.42
40 41 2.589492 CGAAAGCGCGATGGCCTAG 61.589 63.158 12.10 0.00 35.02 3.02
41 42 2.584970 CGAAAGCGCGATGGCCTA 60.585 61.111 12.10 0.00 35.02 3.93
42 43 4.760047 ACGAAAGCGCGATGGCCT 62.760 61.111 12.10 0.00 42.48 5.19
43 44 4.520846 CACGAAAGCGCGATGGCC 62.521 66.667 12.10 0.00 42.48 5.36
44 45 4.520846 CCACGAAAGCGCGATGGC 62.521 66.667 12.10 0.00 42.48 4.40
45 46 3.864686 CCCACGAAAGCGCGATGG 61.865 66.667 12.10 0.00 42.48 3.51
46 47 1.807981 TACCCACGAAAGCGCGATG 60.808 57.895 12.10 0.00 42.48 3.84
47 48 1.808390 GTACCCACGAAAGCGCGAT 60.808 57.895 12.10 0.00 42.48 4.58
48 49 2.431260 GTACCCACGAAAGCGCGA 60.431 61.111 12.10 0.00 42.48 5.87
58 59 2.098426 TTTCGTCACCCCGTACCCAC 62.098 60.000 0.00 0.00 0.00 4.61
59 60 1.818959 CTTTCGTCACCCCGTACCCA 61.819 60.000 0.00 0.00 0.00 4.51
60 61 1.079612 CTTTCGTCACCCCGTACCC 60.080 63.158 0.00 0.00 0.00 3.69
61 62 0.533951 ATCTTTCGTCACCCCGTACC 59.466 55.000 0.00 0.00 0.00 3.34
62 63 1.636988 CATCTTTCGTCACCCCGTAC 58.363 55.000 0.00 0.00 0.00 3.67
63 64 0.108520 GCATCTTTCGTCACCCCGTA 60.109 55.000 0.00 0.00 0.00 4.02
64 65 1.375523 GCATCTTTCGTCACCCCGT 60.376 57.895 0.00 0.00 0.00 5.28
65 66 2.106683 GGCATCTTTCGTCACCCCG 61.107 63.158 0.00 0.00 0.00 5.73
66 67 1.749258 GGGCATCTTTCGTCACCCC 60.749 63.158 0.00 0.00 0.00 4.95
67 68 0.608035 TTGGGCATCTTTCGTCACCC 60.608 55.000 0.00 0.00 37.88 4.61
68 69 1.133025 CATTGGGCATCTTTCGTCACC 59.867 52.381 0.00 0.00 0.00 4.02
69 70 2.083774 TCATTGGGCATCTTTCGTCAC 58.916 47.619 0.00 0.00 0.00 3.67
70 71 2.083774 GTCATTGGGCATCTTTCGTCA 58.916 47.619 0.00 0.00 0.00 4.35
71 72 2.083774 TGTCATTGGGCATCTTTCGTC 58.916 47.619 0.00 0.00 0.00 4.20
72 73 2.198827 TGTCATTGGGCATCTTTCGT 57.801 45.000 0.00 0.00 0.00 3.85
73 74 3.441163 CATTGTCATTGGGCATCTTTCG 58.559 45.455 0.00 0.00 0.00 3.46
74 75 3.196254 ACCATTGTCATTGGGCATCTTTC 59.804 43.478 16.29 0.00 38.64 2.62
75 76 3.175594 ACCATTGTCATTGGGCATCTTT 58.824 40.909 16.29 0.00 38.64 2.52
76 77 2.762327 GACCATTGTCATTGGGCATCTT 59.238 45.455 13.75 0.00 42.29 2.40
77 78 2.381911 GACCATTGTCATTGGGCATCT 58.618 47.619 13.75 0.00 42.29 2.90
78 79 1.410153 GGACCATTGTCATTGGGCATC 59.590 52.381 19.08 7.79 44.74 3.91
79 80 1.488390 GGACCATTGTCATTGGGCAT 58.512 50.000 19.08 0.00 44.74 4.40
80 81 0.614415 GGGACCATTGTCATTGGGCA 60.614 55.000 19.08 0.00 44.74 5.36
81 82 1.666209 CGGGACCATTGTCATTGGGC 61.666 60.000 16.29 13.68 43.65 5.36
82 83 0.034574 TCGGGACCATTGTCATTGGG 60.035 55.000 16.29 1.73 43.65 4.12
83 84 1.382522 CTCGGGACCATTGTCATTGG 58.617 55.000 11.46 11.46 43.65 3.16
84 85 0.734889 GCTCGGGACCATTGTCATTG 59.265 55.000 0.00 0.00 43.65 2.82
85 86 0.744414 CGCTCGGGACCATTGTCATT 60.744 55.000 0.00 0.00 43.65 2.57
86 87 1.153369 CGCTCGGGACCATTGTCAT 60.153 57.895 0.00 0.00 43.65 3.06
87 88 2.264480 CGCTCGGGACCATTGTCA 59.736 61.111 0.00 0.00 43.65 3.58
88 89 2.100631 CACGCTCGGGACCATTGTC 61.101 63.158 0.00 0.00 40.98 3.18
89 90 2.047274 CACGCTCGGGACCATTGT 60.047 61.111 0.00 0.00 0.00 2.71
90 91 3.499737 GCACGCTCGGGACCATTG 61.500 66.667 0.00 0.00 0.00 2.82
91 92 3.706373 AGCACGCTCGGGACCATT 61.706 61.111 0.00 0.00 0.00 3.16
92 93 4.457496 CAGCACGCTCGGGACCAT 62.457 66.667 0.00 0.00 0.00 3.55
98 99 4.988598 ACAACCCAGCACGCTCGG 62.989 66.667 0.68 0.68 0.00 4.63
99 100 3.414700 GACAACCCAGCACGCTCG 61.415 66.667 0.00 0.00 0.00 5.03
100 101 3.050275 GGACAACCCAGCACGCTC 61.050 66.667 0.00 0.00 34.14 5.03
101 102 3.872603 TGGACAACCCAGCACGCT 61.873 61.111 0.00 0.00 40.82 5.07
108 109 0.034756 CATGACGAGTGGACAACCCA 59.965 55.000 0.00 0.00 44.25 4.51
109 110 0.673644 CCATGACGAGTGGACAACCC 60.674 60.000 0.00 0.00 39.12 4.11
110 111 0.320374 TCCATGACGAGTGGACAACC 59.680 55.000 0.00 0.00 40.72 3.77
111 112 3.906660 TCCATGACGAGTGGACAAC 57.093 52.632 0.00 0.00 40.72 3.32
115 116 0.541998 AGTGGTCCATGACGAGTGGA 60.542 55.000 0.00 0.00 43.26 4.02
116 117 0.108615 GAGTGGTCCATGACGAGTGG 60.109 60.000 0.00 0.00 38.11 4.00
117 118 0.603065 TGAGTGGTCCATGACGAGTG 59.397 55.000 0.00 0.00 32.65 3.51
118 119 0.891373 CTGAGTGGTCCATGACGAGT 59.109 55.000 0.00 0.00 32.65 4.18
119 120 0.459237 GCTGAGTGGTCCATGACGAG 60.459 60.000 0.00 0.00 32.65 4.18
120 121 1.591703 GCTGAGTGGTCCATGACGA 59.408 57.895 0.00 0.00 32.65 4.20
121 122 1.448540 GGCTGAGTGGTCCATGACG 60.449 63.158 0.00 0.00 32.65 4.35
122 123 1.448540 CGGCTGAGTGGTCCATGAC 60.449 63.158 0.00 0.00 0.00 3.06
123 124 2.659063 CCGGCTGAGTGGTCCATGA 61.659 63.158 0.00 0.00 0.00 3.07
124 125 2.124983 CCGGCTGAGTGGTCCATG 60.125 66.667 0.00 0.00 0.00 3.66
125 126 3.402681 CCCGGCTGAGTGGTCCAT 61.403 66.667 0.00 0.00 0.00 3.41
126 127 4.954118 ACCCGGCTGAGTGGTCCA 62.954 66.667 0.00 0.00 0.00 4.02
127 128 4.083862 GACCCGGCTGAGTGGTCC 62.084 72.222 7.96 0.00 42.21 4.46
128 129 4.436998 CGACCCGGCTGAGTGGTC 62.437 72.222 8.90 8.90 44.12 4.02
136 137 4.753662 TCTACCAGCGACCCGGCT 62.754 66.667 0.00 0.00 46.13 5.52
137 138 4.208686 CTCTACCAGCGACCCGGC 62.209 72.222 0.00 0.00 0.00 6.13
138 139 1.601419 TTTCTCTACCAGCGACCCGG 61.601 60.000 0.00 0.00 0.00 5.73
139 140 0.179134 CTTTCTCTACCAGCGACCCG 60.179 60.000 0.00 0.00 0.00 5.28
140 141 0.175989 CCTTTCTCTACCAGCGACCC 59.824 60.000 0.00 0.00 0.00 4.46
141 142 0.460459 GCCTTTCTCTACCAGCGACC 60.460 60.000 0.00 0.00 0.00 4.79
142 143 0.460459 GGCCTTTCTCTACCAGCGAC 60.460 60.000 0.00 0.00 0.00 5.19
164 165 1.180456 TACTTCGTCCACGCCCTTGA 61.180 55.000 0.00 0.00 39.60 3.02
173 174 1.066430 GTCATTGGGCTACTTCGTCCA 60.066 52.381 0.00 0.00 36.76 4.02
175 176 2.271800 CAGTCATTGGGCTACTTCGTC 58.728 52.381 0.00 0.00 0.00 4.20
176 177 1.623811 ACAGTCATTGGGCTACTTCGT 59.376 47.619 0.00 0.00 0.00 3.85
183 184 1.380302 GGGTCACAGTCATTGGGCT 59.620 57.895 0.00 0.00 0.00 5.19
184 185 1.678970 GGGGTCACAGTCATTGGGC 60.679 63.158 0.00 0.00 0.00 5.36
204 205 1.669999 GGTGGACCATTCAGCATGCC 61.670 60.000 15.66 0.00 33.36 4.40
208 209 3.586543 TGGGTGGACCATTCAGCA 58.413 55.556 0.00 0.00 46.80 4.41
225 226 4.241555 GCCTGGCCGGACGATGAT 62.242 66.667 15.09 0.00 33.16 2.45
237 238 2.575993 CTCGACTCACCTGCCTGG 59.424 66.667 0.00 0.00 42.93 4.45
238 239 2.279069 ACCTCGACTCACCTGCCTG 61.279 63.158 0.00 0.00 0.00 4.85
243 244 1.972223 CGACCACCTCGACTCACCT 60.972 63.158 0.00 0.00 46.14 4.00
280 281 5.253330 CCATTATTATTAGGCGGTGTCCAT 58.747 41.667 0.00 0.00 0.00 3.41
281 282 4.647611 CCATTATTATTAGGCGGTGTCCA 58.352 43.478 0.00 0.00 0.00 4.02
291 292 2.375146 GCCCGGGGCCATTATTATTAG 58.625 52.381 28.23 0.00 44.06 1.73
292 293 2.517998 GCCCGGGGCCATTATTATTA 57.482 50.000 28.23 0.00 44.06 0.98
428 453 3.655211 CCTGGGCTGCTTGAGGGT 61.655 66.667 0.00 0.00 0.00 4.34
442 467 0.393077 CTAATGTACCCGCCTCCCTG 59.607 60.000 0.00 0.00 0.00 4.45
478 503 6.876789 ACATACTGATTCAAAACACCATACGA 59.123 34.615 0.00 0.00 0.00 3.43
479 504 7.072177 ACATACTGATTCAAAACACCATACG 57.928 36.000 0.00 0.00 0.00 3.06
502 527 9.601217 TCTAGAATTGCAGACTTAAGGATTAAC 57.399 33.333 7.53 0.00 35.24 2.01
651 681 2.073056 TCCACGAACGTCATTTCATGG 58.927 47.619 0.00 0.00 39.70 3.66
689 721 6.869315 TCAAACACATTTTGGAGTATCGAA 57.131 33.333 0.00 0.00 34.37 3.71
706 742 9.195411 GATGCTTGAAGATGTTATTTTCAAACA 57.805 29.630 11.02 11.02 39.65 2.83
722 758 6.017770 TGGCAAAAGAAAATTGATGCTTGAAG 60.018 34.615 0.00 0.00 34.37 3.02
726 762 5.124645 TGTGGCAAAAGAAAATTGATGCTT 58.875 33.333 0.00 0.00 34.37 3.91
751 787 7.885009 TCACCATCATATGACATTGTTGAAT 57.115 32.000 7.78 0.00 0.00 2.57
755 791 9.947433 AAAATTTCACCATCATATGACATTGTT 57.053 25.926 7.78 0.00 28.29 2.83
769 805 9.765795 TTTCGGTAATTTGTAAAATTTCACCAT 57.234 25.926 13.73 0.00 0.00 3.55
823 859 3.938334 CGTCATTTCACCACCATATGACA 59.062 43.478 3.65 0.00 43.16 3.58
824 860 3.938963 ACGTCATTTCACCACCATATGAC 59.061 43.478 3.65 0.00 40.87 3.06
825 861 4.214986 ACGTCATTTCACCACCATATGA 57.785 40.909 3.65 0.00 0.00 2.15
826 862 4.963276 AACGTCATTTCACCACCATATG 57.037 40.909 0.00 0.00 0.00 1.78
827 863 5.941058 TGTAAACGTCATTTCACCACCATAT 59.059 36.000 0.00 0.00 0.00 1.78
829 865 4.138290 TGTAAACGTCATTTCACCACCAT 58.862 39.130 0.00 0.00 0.00 3.55
830 866 3.542648 TGTAAACGTCATTTCACCACCA 58.457 40.909 0.00 0.00 0.00 4.17
831 867 4.555348 TTGTAAACGTCATTTCACCACC 57.445 40.909 0.00 0.00 0.00 4.61
832 868 7.644551 TGTAATTTGTAAACGTCATTTCACCAC 59.355 33.333 0.00 0.00 0.00 4.16
834 870 8.736751 ATGTAATTTGTAAACGTCATTTCACC 57.263 30.769 0.00 0.00 0.00 4.02
933 3636 5.292589 GTCGAGCCGTAAATAATTGAGGAAA 59.707 40.000 0.00 0.00 0.00 3.13
945 3648 0.038892 GTGAGTGGTCGAGCCGTAAA 60.039 55.000 12.85 0.00 41.21 2.01
1127 3833 4.082408 GGGAAAGGAAAAGGTTACCATTCG 60.082 45.833 3.51 0.00 33.85 3.34
1128 3834 5.084519 AGGGAAAGGAAAAGGTTACCATTC 58.915 41.667 3.51 7.73 32.77 2.67
1185 3891 1.202687 CCGGAATATCAGAGCAAGGCA 60.203 52.381 0.00 0.00 0.00 4.75
1272 3978 1.999648 ATTTTGCCAAGCTGGTCAGA 58.000 45.000 1.65 0.00 40.46 3.27
1350 4056 4.343526 TCAGCTAGGATCAACTGATTCTCC 59.656 45.833 3.67 0.00 39.55 3.71
1376 4082 5.105310 GGAATGATGTATGCCGGATACTACT 60.105 44.000 5.05 0.53 38.26 2.57
1525 4233 3.554324 CACAATCAATGGCTTTGCTATGC 59.446 43.478 8.16 0.00 35.16 3.14
1775 4483 5.893687 TGCAGCTTGTAATTGGATGTTATG 58.106 37.500 0.00 0.00 0.00 1.90
1795 4503 2.892852 CCTGAGGTCAAGGAATTTTGCA 59.107 45.455 0.00 0.00 0.00 4.08
1875 4583 6.349777 CCAGAACCACAACTGTTTTTGTTAGA 60.350 38.462 0.00 0.00 37.62 2.10
1981 4689 1.003839 TTGCCATCGACAGGACCAC 60.004 57.895 9.80 0.00 0.00 4.16
2201 4936 1.194781 ACTGGGTAGCAGGTGTCTGG 61.195 60.000 0.00 0.00 41.19 3.86
2234 4969 2.946329 TCGTACAGCAAAAGCTTCCAAA 59.054 40.909 0.00 0.00 0.00 3.28
2314 5049 1.792006 GTGGTTAGTCTTGGTGACCG 58.208 55.000 0.00 0.00 46.46 4.79
2462 5197 1.878953 TCGAAAGGTGTTTCTGCTCC 58.121 50.000 0.00 0.00 40.10 4.70
2479 5214 6.951256 TCACATAATTGTCTCTCAGTTTCG 57.049 37.500 0.00 0.00 32.34 3.46
2602 5337 4.584743 ACATCAAGCATCAGGTACTATCGA 59.415 41.667 0.00 0.00 36.02 3.59
2737 5472 5.657302 ACTACTCTGGAATACCACAGTTAGG 59.343 44.000 0.00 0.00 41.43 2.69
2827 5562 8.635765 TTATTTTATGAAGGCAAGTCTGAAGT 57.364 30.769 0.00 0.00 0.00 3.01
3068 5816 5.147162 CGTAAGTGGAAGCAATCAAACTTC 58.853 41.667 10.88 0.00 41.28 3.01
3118 5866 4.504858 AGTTTCTACAGTTATTCCGCCTG 58.495 43.478 0.00 0.00 0.00 4.85
3143 5891 9.276590 TGCTTATCCTACATATGACTCAAAATG 57.723 33.333 10.38 4.08 0.00 2.32
3208 5959 9.887406 TTTATCGACAAGAAGGAAAATGTTAAC 57.113 29.630 0.00 0.00 0.00 2.01
3236 5987 8.962679 TGTAGTAAGTCTGAATGGTTTTTGTTT 58.037 29.630 0.00 0.00 0.00 2.83
3305 6056 8.148999 CACCCTTAATAGGATCCTAGTAACAAC 58.851 40.741 29.22 0.00 45.05 3.32
3366 6117 6.528072 GGTCATATTTTAAAACTGCAGTCTGC 59.472 38.462 21.95 18.32 45.29 4.26
4064 6848 1.065926 TGCAGTCACCAGCATAAGGAG 60.066 52.381 0.00 0.00 35.51 3.69
4138 6922 0.807496 AAATTCTTCGGCAGAGCAGC 59.193 50.000 0.00 0.00 31.12 5.25
4176 6960 1.000938 GCAGTTTCTTCCAAGCCTGTG 60.001 52.381 0.00 0.00 0.00 3.66
4203 6987 4.166888 GGCAGAGGCGCATGGAGA 62.167 66.667 10.83 0.00 42.47 3.71
4205 6989 1.771783 ATATGGCAGAGGCGCATGGA 61.772 55.000 10.83 0.00 42.47 3.41
4250 7034 0.773644 AGCCACTCCATCCAAAGTGT 59.226 50.000 2.24 0.00 41.04 3.55
4371 7155 0.811219 CCATCGGCAGATTCGCTCAA 60.811 55.000 0.00 0.00 34.23 3.02
4375 7159 1.572085 CCATCCATCGGCAGATTCGC 61.572 60.000 0.00 0.00 34.23 4.70
4386 7170 0.546122 TACAGGTGCCACCATCCATC 59.454 55.000 17.80 0.00 41.95 3.51
4398 7182 7.382110 CAATCCTACTTCCTCATATACAGGTG 58.618 42.308 0.43 0.00 32.20 4.00
4455 7239 2.781923 TCAGCAGCATTAGTCAGCAAA 58.218 42.857 0.00 0.00 0.00 3.68
4461 7245 2.729156 GCCGTTTTCAGCAGCATTAGTC 60.729 50.000 0.00 0.00 0.00 2.59
4495 7279 0.948623 CGCCCGATGAGAAACACACA 60.949 55.000 0.00 0.00 0.00 3.72
4499 7283 1.885560 TTTTCGCCCGATGAGAAACA 58.114 45.000 3.97 0.00 41.60 2.83
4642 7461 2.482142 CCGTTAGGCTCTGAATCCTGAC 60.482 54.545 0.00 8.68 36.11 3.51
4666 7485 0.754957 CACACACCACAACCCCACAT 60.755 55.000 0.00 0.00 0.00 3.21
4667 7486 1.379176 CACACACCACAACCCCACA 60.379 57.895 0.00 0.00 0.00 4.17
4668 7487 0.107116 TACACACACCACAACCCCAC 60.107 55.000 0.00 0.00 0.00 4.61
4669 7488 0.181587 CTACACACACCACAACCCCA 59.818 55.000 0.00 0.00 0.00 4.96
4670 7489 0.536460 CCTACACACACCACAACCCC 60.536 60.000 0.00 0.00 0.00 4.95
4671 7490 0.536460 CCCTACACACACCACAACCC 60.536 60.000 0.00 0.00 0.00 4.11
4672 7491 1.170290 GCCCTACACACACCACAACC 61.170 60.000 0.00 0.00 0.00 3.77
4866 7686 9.230932 CCCGTTTTCTTAAACAACGTATTTTTA 57.769 29.630 3.32 0.00 43.05 1.52
4875 7695 3.439895 TGGCCCGTTTTCTTAAACAAC 57.560 42.857 0.00 0.00 43.05 3.32
4888 7708 0.625849 AAGATTCTTGGATGGCCCGT 59.374 50.000 0.00 0.00 37.93 5.28
4931 7754 1.307097 GGAGAGCATGATCACCTTGC 58.693 55.000 18.76 11.10 43.83 4.01
4962 7785 7.268199 TCATTTTGCTGGATCATGTAGATTC 57.732 36.000 0.00 0.00 37.00 2.52
5127 7951 5.230726 GCAGTGTTTCACAGAACTCAATTTG 59.769 40.000 2.80 0.00 36.74 2.32
5222 8046 1.281419 TGATTACCAGCCTTCCCGAA 58.719 50.000 0.00 0.00 0.00 4.30
5226 8050 2.213499 CGACATGATTACCAGCCTTCC 58.787 52.381 0.00 0.00 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.