Multiple sequence alignment - TraesCS7A01G299300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G299300 chr7A 100.000 4599 0 0 1 4599 409312265 409307667 0.000000e+00 8493
1 TraesCS7A01G299300 chr7A 90.984 244 15 3 1 244 635506466 635506230 5.740000e-84 322
2 TraesCS7A01G299300 chr7D 96.231 4166 103 15 408 4532 371732629 371728477 0.000000e+00 6774
3 TraesCS7A01G299300 chr7D 90.947 243 16 2 1 243 181066204 181065968 5.740000e-84 322
4 TraesCS7A01G299300 chr7D 96.296 135 5 0 244 378 371732763 371732629 5.990000e-54 222
5 TraesCS7A01G299300 chr7D 92.857 70 4 1 4531 4599 371728432 371728363 2.930000e-17 100
6 TraesCS7A01G299300 chr7B 95.054 3882 113 17 508 4354 366128020 366124183 0.000000e+00 6032
7 TraesCS7A01G299300 chr7B 92.277 505 26 2 4028 4532 366124188 366123697 0.000000e+00 704
8 TraesCS7A01G299300 chr7B 82.500 280 20 15 244 522 366129491 366129240 7.750000e-53 219
9 TraesCS7A01G299300 chr7B 96.970 66 2 0 4534 4599 366123634 366123569 1.350000e-20 111
10 TraesCS7A01G299300 chr1A 91.393 244 15 1 1 244 349262415 349262652 3.430000e-86 329
11 TraesCS7A01G299300 chr5D 90.984 244 16 2 1 244 109961834 109961597 1.600000e-84 324
12 TraesCS7A01G299300 chr5D 90.947 243 15 2 1 243 351850592 351850827 2.060000e-83 320
13 TraesCS7A01G299300 chr4D 90.984 244 16 5 1 244 40792775 40792538 1.600000e-84 324
14 TraesCS7A01G299300 chr4D 90.984 244 17 4 1 244 271917147 271916909 1.600000e-84 324
15 TraesCS7A01G299300 chr2D 90.984 244 16 2 1 244 159769285 159769048 1.600000e-84 324
16 TraesCS7A01G299300 chr4A 90.947 243 16 1 1 243 580307240 580307004 5.740000e-84 322


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G299300 chr7A 409307667 409312265 4598 True 8493.000000 8493 100.00000 1 4599 1 chr7A.!!$R1 4598
1 TraesCS7A01G299300 chr7D 371728363 371732763 4400 True 2365.333333 6774 95.12800 244 4599 3 chr7D.!!$R2 4355
2 TraesCS7A01G299300 chr7B 366123569 366129491 5922 True 1766.500000 6032 91.70025 244 4599 4 chr7B.!!$R1 4355

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
160 161 0.106149 GAACAGTGTCAGTTCGGGGT 59.894 55.0 0.0 0.0 36.40 4.95 F
359 360 0.108774 TCACATGGCGGTAACCAACA 59.891 50.0 0.0 0.0 44.65 3.33 F
750 2012 0.254107 AAGGCTAAATGGGAGGGGGA 60.254 55.0 0.0 0.0 0.00 4.81 F
2194 3470 0.798776 GATCAAACCAGCCACTCACG 59.201 55.0 0.0 0.0 0.00 4.35 F
2401 3677 1.874345 GCAACCTGCTGCTCAATGCT 61.874 55.0 0.0 0.0 40.96 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1553 2829 0.798159 TCTGTGCATTTACAGCAGCG 59.202 50.000 0.0 0.0 45.94 5.18 R
1699 2975 2.027377 ACAAGAAGGCACATGAGAGAGG 60.027 50.000 0.0 0.0 0.00 3.69 R
2446 3722 4.159321 TCCATCATGAAGTCAGTCTCAGTC 59.841 45.833 0.0 0.0 0.00 3.51 R
3517 4797 4.225942 TCTTCCTCAGTAAATGATGGCTGT 59.774 41.667 0.0 0.0 37.28 4.40 R
4231 5517 3.753797 GAGAACTTTGGGTGTGATCCTTC 59.246 47.826 0.0 0.0 0.00 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.927501 CACCCAGGGGCCCCTTTT 61.928 66.667 42.71 24.99 45.70 2.27
18 19 3.600981 ACCCAGGGGCCCCTTTTC 61.601 66.667 42.71 14.73 45.70 2.29
19 20 4.759205 CCCAGGGGCCCCTTTTCG 62.759 72.222 42.71 28.94 45.70 3.46
20 21 4.759205 CCAGGGGCCCCTTTTCGG 62.759 72.222 42.71 33.67 45.70 4.30
21 22 3.979497 CAGGGGCCCCTTTTCGGT 61.979 66.667 42.71 16.99 45.70 4.69
22 23 2.204182 AGGGGCCCCTTTTCGGTA 60.204 61.111 39.79 0.00 45.70 4.02
23 24 2.274432 GGGGCCCCTTTTCGGTAG 59.726 66.667 35.49 0.00 0.00 3.18
24 25 2.274432 GGGCCCCTTTTCGGTAGG 59.726 66.667 12.23 0.00 0.00 3.18
25 26 2.609534 GGGCCCCTTTTCGGTAGGT 61.610 63.158 12.23 0.00 0.00 3.08
26 27 1.077930 GGCCCCTTTTCGGTAGGTC 60.078 63.158 0.00 0.00 0.00 3.85
27 28 1.559965 GGCCCCTTTTCGGTAGGTCT 61.560 60.000 0.00 0.00 0.00 3.85
28 29 0.327259 GCCCCTTTTCGGTAGGTCTT 59.673 55.000 0.00 0.00 0.00 3.01
29 30 1.949079 GCCCCTTTTCGGTAGGTCTTG 60.949 57.143 0.00 0.00 0.00 3.02
30 31 1.339727 CCCCTTTTCGGTAGGTCTTGG 60.340 57.143 0.00 0.00 0.00 3.61
31 32 1.450025 CCTTTTCGGTAGGTCTTGGC 58.550 55.000 0.00 0.00 0.00 4.52
32 33 1.003233 CCTTTTCGGTAGGTCTTGGCT 59.997 52.381 0.00 0.00 0.00 4.75
33 34 2.552373 CCTTTTCGGTAGGTCTTGGCTT 60.552 50.000 0.00 0.00 0.00 4.35
34 35 2.467566 TTTCGGTAGGTCTTGGCTTC 57.532 50.000 0.00 0.00 0.00 3.86
35 36 1.344065 TTCGGTAGGTCTTGGCTTCA 58.656 50.000 0.00 0.00 0.00 3.02
36 37 0.895530 TCGGTAGGTCTTGGCTTCAG 59.104 55.000 0.00 0.00 0.00 3.02
37 38 0.895530 CGGTAGGTCTTGGCTTCAGA 59.104 55.000 0.00 0.00 0.00 3.27
38 39 1.275291 CGGTAGGTCTTGGCTTCAGAA 59.725 52.381 0.00 0.00 0.00 3.02
39 40 2.289444 CGGTAGGTCTTGGCTTCAGAAA 60.289 50.000 0.00 0.00 0.00 2.52
40 41 3.619979 CGGTAGGTCTTGGCTTCAGAAAT 60.620 47.826 0.00 0.00 0.00 2.17
41 42 4.336280 GGTAGGTCTTGGCTTCAGAAATT 58.664 43.478 0.00 0.00 0.00 1.82
42 43 4.396478 GGTAGGTCTTGGCTTCAGAAATTC 59.604 45.833 0.00 0.00 0.00 2.17
43 44 4.379302 AGGTCTTGGCTTCAGAAATTCT 57.621 40.909 0.00 0.00 0.00 2.40
44 45 4.734266 AGGTCTTGGCTTCAGAAATTCTT 58.266 39.130 0.00 0.00 0.00 2.52
45 46 5.880901 AGGTCTTGGCTTCAGAAATTCTTA 58.119 37.500 0.00 0.00 0.00 2.10
46 47 6.488715 AGGTCTTGGCTTCAGAAATTCTTAT 58.511 36.000 0.00 0.00 0.00 1.73
47 48 7.633789 AGGTCTTGGCTTCAGAAATTCTTATA 58.366 34.615 0.00 0.00 0.00 0.98
48 49 8.277918 AGGTCTTGGCTTCAGAAATTCTTATAT 58.722 33.333 0.00 0.00 0.00 0.86
49 50 9.561069 GGTCTTGGCTTCAGAAATTCTTATATA 57.439 33.333 0.00 0.00 0.00 0.86
53 54 9.561069 TTGGCTTCAGAAATTCTTATATACTCC 57.439 33.333 0.00 0.00 0.00 3.85
54 55 8.938883 TGGCTTCAGAAATTCTTATATACTCCT 58.061 33.333 0.00 0.00 0.00 3.69
86 87 7.520119 AAAAATTCCTCACAAAGTTTCGTTC 57.480 32.000 0.00 0.00 0.00 3.95
87 88 4.830826 ATTCCTCACAAAGTTTCGTTCC 57.169 40.909 0.00 0.00 0.00 3.62
88 89 3.269538 TCCTCACAAAGTTTCGTTCCA 57.730 42.857 0.00 0.00 0.00 3.53
89 90 3.815809 TCCTCACAAAGTTTCGTTCCAT 58.184 40.909 0.00 0.00 0.00 3.41
90 91 4.204012 TCCTCACAAAGTTTCGTTCCATT 58.796 39.130 0.00 0.00 0.00 3.16
91 92 4.274950 TCCTCACAAAGTTTCGTTCCATTC 59.725 41.667 0.00 0.00 0.00 2.67
92 93 4.537015 CTCACAAAGTTTCGTTCCATTCC 58.463 43.478 0.00 0.00 0.00 3.01
93 94 3.002862 TCACAAAGTTTCGTTCCATTCCG 59.997 43.478 0.00 0.00 0.00 4.30
94 95 3.002862 CACAAAGTTTCGTTCCATTCCGA 59.997 43.478 0.00 0.00 0.00 4.55
95 96 3.250040 ACAAAGTTTCGTTCCATTCCGAG 59.750 43.478 0.00 0.00 34.16 4.63
96 97 3.396260 AAGTTTCGTTCCATTCCGAGA 57.604 42.857 0.00 0.00 34.16 4.04
97 98 3.396260 AGTTTCGTTCCATTCCGAGAA 57.604 42.857 0.00 0.00 34.16 2.87
98 99 3.064931 AGTTTCGTTCCATTCCGAGAAC 58.935 45.455 0.00 0.00 39.19 3.01
99 100 3.064931 GTTTCGTTCCATTCCGAGAACT 58.935 45.455 0.00 0.00 40.18 3.01
100 101 3.396260 TTCGTTCCATTCCGAGAACTT 57.604 42.857 0.00 0.00 40.18 2.66
101 102 3.396260 TCGTTCCATTCCGAGAACTTT 57.604 42.857 0.00 0.00 40.18 2.66
102 103 3.735591 TCGTTCCATTCCGAGAACTTTT 58.264 40.909 0.00 0.00 40.18 2.27
103 104 4.885413 TCGTTCCATTCCGAGAACTTTTA 58.115 39.130 0.00 0.00 40.18 1.52
104 105 5.484715 TCGTTCCATTCCGAGAACTTTTAT 58.515 37.500 0.00 0.00 40.18 1.40
105 106 5.935789 TCGTTCCATTCCGAGAACTTTTATT 59.064 36.000 0.00 0.00 40.18 1.40
106 107 6.428771 TCGTTCCATTCCGAGAACTTTTATTT 59.571 34.615 0.00 0.00 40.18 1.40
107 108 6.741358 CGTTCCATTCCGAGAACTTTTATTTC 59.259 38.462 0.00 0.00 40.18 2.17
108 109 7.360946 CGTTCCATTCCGAGAACTTTTATTTCT 60.361 37.037 0.00 0.00 40.18 2.52
109 110 7.377766 TCCATTCCGAGAACTTTTATTTCTG 57.622 36.000 0.00 0.00 33.30 3.02
110 111 6.030228 CCATTCCGAGAACTTTTATTTCTGC 58.970 40.000 0.00 0.00 33.30 4.26
111 112 6.349280 CCATTCCGAGAACTTTTATTTCTGCA 60.349 38.462 0.00 0.00 33.30 4.41
112 113 5.607119 TCCGAGAACTTTTATTTCTGCAC 57.393 39.130 0.00 0.00 33.30 4.57
113 114 5.060506 TCCGAGAACTTTTATTTCTGCACA 58.939 37.500 0.00 0.00 33.30 4.57
114 115 5.529430 TCCGAGAACTTTTATTTCTGCACAA 59.471 36.000 0.00 0.00 33.30 3.33
115 116 6.038825 TCCGAGAACTTTTATTTCTGCACAAA 59.961 34.615 0.00 0.00 33.30 2.83
116 117 6.695278 CCGAGAACTTTTATTTCTGCACAAAA 59.305 34.615 0.00 0.00 33.30 2.44
117 118 7.221838 CCGAGAACTTTTATTTCTGCACAAAAA 59.778 33.333 0.00 0.00 33.30 1.94
118 119 8.050170 CGAGAACTTTTATTTCTGCACAAAAAC 58.950 33.333 0.00 0.00 33.30 2.43
119 120 8.770438 AGAACTTTTATTTCTGCACAAAAACA 57.230 26.923 0.00 0.00 31.88 2.83
120 121 9.213799 AGAACTTTTATTTCTGCACAAAAACAA 57.786 25.926 0.00 0.00 31.88 2.83
121 122 9.261318 GAACTTTTATTTCTGCACAAAAACAAC 57.739 29.630 0.00 0.00 0.00 3.32
122 123 8.316640 ACTTTTATTTCTGCACAAAAACAACA 57.683 26.923 0.00 0.00 0.00 3.33
123 124 8.227119 ACTTTTATTTCTGCACAAAAACAACAC 58.773 29.630 0.00 0.00 0.00 3.32
124 125 6.654793 TTATTTCTGCACAAAAACAACACC 57.345 33.333 0.00 0.00 0.00 4.16
125 126 3.667497 TTCTGCACAAAAACAACACCA 57.333 38.095 0.00 0.00 0.00 4.17
126 127 3.883830 TCTGCACAAAAACAACACCAT 57.116 38.095 0.00 0.00 0.00 3.55
127 128 3.519579 TCTGCACAAAAACAACACCATG 58.480 40.909 0.00 0.00 0.00 3.66
128 129 2.608546 CTGCACAAAAACAACACCATGG 59.391 45.455 11.19 11.19 0.00 3.66
129 130 2.027745 TGCACAAAAACAACACCATGGT 60.028 40.909 13.00 13.00 0.00 3.55
130 131 3.195610 TGCACAAAAACAACACCATGGTA 59.804 39.130 19.28 0.00 0.00 3.25
131 132 3.801594 GCACAAAAACAACACCATGGTAG 59.198 43.478 19.28 14.48 0.00 3.18
132 133 4.679372 GCACAAAAACAACACCATGGTAGT 60.679 41.667 19.28 15.16 0.00 2.73
133 134 5.415221 CACAAAAACAACACCATGGTAGTT 58.585 37.500 19.28 19.98 0.00 2.24
134 135 5.518487 CACAAAAACAACACCATGGTAGTTC 59.482 40.000 19.28 0.00 0.00 3.01
135 136 5.420739 ACAAAAACAACACCATGGTAGTTCT 59.579 36.000 19.28 9.33 0.00 3.01
136 137 5.514274 AAAACAACACCATGGTAGTTCTG 57.486 39.130 19.28 15.28 0.00 3.02
137 138 2.504367 ACAACACCATGGTAGTTCTGC 58.496 47.619 19.28 0.00 0.00 4.26
138 139 2.106511 ACAACACCATGGTAGTTCTGCT 59.893 45.455 19.28 0.19 0.00 4.24
139 140 2.479566 ACACCATGGTAGTTCTGCTG 57.520 50.000 19.28 4.20 0.00 4.41
140 141 1.977854 ACACCATGGTAGTTCTGCTGA 59.022 47.619 19.28 0.00 0.00 4.26
141 142 2.027745 ACACCATGGTAGTTCTGCTGAG 60.028 50.000 19.28 2.73 0.00 3.35
142 143 2.234661 CACCATGGTAGTTCTGCTGAGA 59.765 50.000 19.28 0.00 0.00 3.27
143 144 2.906389 ACCATGGTAGTTCTGCTGAGAA 59.094 45.455 18.10 0.00 35.75 2.87
152 153 2.808523 TCTGCTGAGAACAGTGTCAG 57.191 50.000 0.00 0.69 45.76 3.51
153 154 2.034878 TCTGCTGAGAACAGTGTCAGT 58.965 47.619 12.71 0.00 44.99 3.41
154 155 2.432146 TCTGCTGAGAACAGTGTCAGTT 59.568 45.455 12.71 0.00 44.99 3.16
155 156 2.799412 CTGCTGAGAACAGTGTCAGTTC 59.201 50.000 12.71 0.00 44.99 3.01
159 160 2.914379 GAACAGTGTCAGTTCGGGG 58.086 57.895 0.00 0.00 36.40 5.73
160 161 0.106149 GAACAGTGTCAGTTCGGGGT 59.894 55.000 0.00 0.00 36.40 4.95
161 162 0.544697 AACAGTGTCAGTTCGGGGTT 59.455 50.000 0.00 0.00 0.00 4.11
162 163 1.416243 ACAGTGTCAGTTCGGGGTTA 58.584 50.000 0.00 0.00 0.00 2.85
163 164 1.343465 ACAGTGTCAGTTCGGGGTTAG 59.657 52.381 0.00 0.00 0.00 2.34
164 165 1.343465 CAGTGTCAGTTCGGGGTTAGT 59.657 52.381 0.00 0.00 0.00 2.24
165 166 2.044758 AGTGTCAGTTCGGGGTTAGTT 58.955 47.619 0.00 0.00 0.00 2.24
166 167 2.436911 AGTGTCAGTTCGGGGTTAGTTT 59.563 45.455 0.00 0.00 0.00 2.66
167 168 3.118149 AGTGTCAGTTCGGGGTTAGTTTT 60.118 43.478 0.00 0.00 0.00 2.43
168 169 4.101430 AGTGTCAGTTCGGGGTTAGTTTTA 59.899 41.667 0.00 0.00 0.00 1.52
169 170 4.999311 GTGTCAGTTCGGGGTTAGTTTTAT 59.001 41.667 0.00 0.00 0.00 1.40
170 171 5.471116 GTGTCAGTTCGGGGTTAGTTTTATT 59.529 40.000 0.00 0.00 0.00 1.40
171 172 5.702209 TGTCAGTTCGGGGTTAGTTTTATTC 59.298 40.000 0.00 0.00 0.00 1.75
172 173 5.702209 GTCAGTTCGGGGTTAGTTTTATTCA 59.298 40.000 0.00 0.00 0.00 2.57
173 174 6.205270 GTCAGTTCGGGGTTAGTTTTATTCAA 59.795 38.462 0.00 0.00 0.00 2.69
174 175 6.771749 TCAGTTCGGGGTTAGTTTTATTCAAA 59.228 34.615 0.00 0.00 0.00 2.69
175 176 7.449086 TCAGTTCGGGGTTAGTTTTATTCAAAT 59.551 33.333 0.00 0.00 0.00 2.32
176 177 7.753580 CAGTTCGGGGTTAGTTTTATTCAAATC 59.246 37.037 0.00 0.00 0.00 2.17
177 178 7.449086 AGTTCGGGGTTAGTTTTATTCAAATCA 59.551 33.333 0.00 0.00 0.00 2.57
178 179 7.948034 TCGGGGTTAGTTTTATTCAAATCAT 57.052 32.000 0.00 0.00 0.00 2.45
179 180 9.463902 TTCGGGGTTAGTTTTATTCAAATCATA 57.536 29.630 0.00 0.00 0.00 2.15
180 181 8.895737 TCGGGGTTAGTTTTATTCAAATCATAC 58.104 33.333 0.00 0.00 0.00 2.39
181 182 8.679100 CGGGGTTAGTTTTATTCAAATCATACA 58.321 33.333 0.00 0.00 0.00 2.29
210 211 7.751768 AGAGTCCAAAATAAAAGGAAGAGTG 57.248 36.000 0.00 0.00 32.30 3.51
211 212 7.290813 AGAGTCCAAAATAAAAGGAAGAGTGT 58.709 34.615 0.00 0.00 32.30 3.55
212 213 7.780271 AGAGTCCAAAATAAAAGGAAGAGTGTT 59.220 33.333 0.00 0.00 32.30 3.32
213 214 8.990163 AGTCCAAAATAAAAGGAAGAGTGTTA 57.010 30.769 0.00 0.00 32.30 2.41
214 215 9.067986 AGTCCAAAATAAAAGGAAGAGTGTTAG 57.932 33.333 0.00 0.00 32.30 2.34
215 216 8.297426 GTCCAAAATAAAAGGAAGAGTGTTAGG 58.703 37.037 0.00 0.00 32.30 2.69
216 217 8.221944 TCCAAAATAAAAGGAAGAGTGTTAGGA 58.778 33.333 0.00 0.00 0.00 2.94
217 218 8.856103 CCAAAATAAAAGGAAGAGTGTTAGGAA 58.144 33.333 0.00 0.00 0.00 3.36
224 225 9.862149 AAAAGGAAGAGTGTTAGGAAAAATAGA 57.138 29.630 0.00 0.00 0.00 1.98
237 238 9.542462 TTAGGAAAAATAGATATGTTGGAGACG 57.458 33.333 0.00 0.00 0.00 4.18
238 239 7.565680 AGGAAAAATAGATATGTTGGAGACGT 58.434 34.615 0.00 0.00 0.00 4.34
239 240 8.701895 AGGAAAAATAGATATGTTGGAGACGTA 58.298 33.333 0.00 0.00 34.38 3.57
240 241 9.490379 GGAAAAATAGATATGTTGGAGACGTAT 57.510 33.333 0.00 0.00 41.95 3.06
359 360 0.108774 TCACATGGCGGTAACCAACA 59.891 50.000 0.00 0.00 44.65 3.33
381 382 5.359576 ACAAATGACCAACTGCAAGAAACTA 59.640 36.000 0.00 0.00 37.43 2.24
382 383 5.695851 AATGACCAACTGCAAGAAACTAG 57.304 39.130 0.00 0.00 37.43 2.57
383 384 4.415881 TGACCAACTGCAAGAAACTAGA 57.584 40.909 0.00 0.00 37.43 2.43
397 398 9.600646 GCAAGAAACTAGAAATTCACTTAACTC 57.399 33.333 0.00 0.00 0.00 3.01
469 470 4.224370 TCGGCAGGTTTTCTTCCTATAACT 59.776 41.667 0.00 0.00 33.54 2.24
483 484 7.619698 TCTTCCTATAACTGAAGATCAACCAGA 59.380 37.037 13.58 0.00 41.42 3.86
516 1752 6.872670 TTACAAAAACAACCTAACTTTGCG 57.127 33.333 0.00 0.00 31.60 4.85
601 1844 5.006068 CAGGTGTCACAGAAATGTCATATCG 59.994 44.000 5.12 0.00 0.00 2.92
737 1999 3.191888 AGGGAAGAGAAGTGAAGGCTA 57.808 47.619 0.00 0.00 0.00 3.93
740 2002 4.538089 AGGGAAGAGAAGTGAAGGCTAAAT 59.462 41.667 0.00 0.00 0.00 1.40
750 2012 0.254107 AAGGCTAAATGGGAGGGGGA 60.254 55.000 0.00 0.00 0.00 4.81
804 2066 3.423154 GCCAACCAACTCCTCGCG 61.423 66.667 0.00 0.00 0.00 5.87
870 2132 1.228429 CCCTTTTCCCCAACGCTCA 60.228 57.895 0.00 0.00 0.00 4.26
876 2138 3.644966 TTTCCCCAACGCTCATATCTT 57.355 42.857 0.00 0.00 0.00 2.40
929 2197 2.368548 TCTCTCTCTCTCTCATCCTCCG 59.631 54.545 0.00 0.00 0.00 4.63
1041 2309 4.423209 GGGGCAGGAGGAGGAGGT 62.423 72.222 0.00 0.00 0.00 3.85
1164 2432 2.089980 GTCTCTGCTAAGTACGTCCCA 58.910 52.381 0.00 0.00 0.00 4.37
1260 2528 7.683704 GCGTATATTCCTCAGTTACCTCAGAAA 60.684 40.741 0.00 0.00 0.00 2.52
1549 2825 9.609950 CAAATTCTTTTCTGTGATCTTCTTCTC 57.390 33.333 0.00 0.00 0.00 2.87
1553 2829 3.883830 TCTGTGATCTTCTTCTCCAGC 57.116 47.619 0.00 0.00 0.00 4.85
1595 2871 1.134367 CGTGAGGAGGTCGCTATCAAA 59.866 52.381 0.00 0.00 33.04 2.69
1601 2877 5.362717 TGAGGAGGTCGCTATCAAAAAGATA 59.637 40.000 0.00 0.00 38.19 1.98
1699 2975 3.876320 GAGAATGTGAGCCATCTTTCCTC 59.124 47.826 0.00 0.00 31.75 3.71
1721 2997 3.196469 CCTCTCTCATGTGCCTTCTTGTA 59.804 47.826 0.00 0.00 0.00 2.41
1937 3213 1.569653 AGTTCCCTACCTGTGCTACC 58.430 55.000 0.00 0.00 0.00 3.18
2194 3470 0.798776 GATCAAACCAGCCACTCACG 59.201 55.000 0.00 0.00 0.00 4.35
2238 3514 4.939255 ACATTGTTCTTTCCATCATCCCT 58.061 39.130 0.00 0.00 0.00 4.20
2260 3536 4.025040 TCAGCATCAGTCCAAACATTCT 57.975 40.909 0.00 0.00 0.00 2.40
2377 3653 2.525629 TTGCACCGGGACCTCAGA 60.526 61.111 6.32 0.00 0.00 3.27
2401 3677 1.874345 GCAACCTGCTGCTCAATGCT 61.874 55.000 0.00 0.00 40.96 3.79
2446 3722 2.125106 GGCTTGGCTAGGACCACG 60.125 66.667 0.00 0.00 40.19 4.94
2674 3950 8.102800 TCACTACTACACGAGTCAAGATTTTA 57.897 34.615 0.00 0.00 39.81 1.52
2915 4191 5.303165 TGCATATGCCTTCATTCAGACTAG 58.697 41.667 24.54 0.00 41.18 2.57
3231 4507 7.470147 CGAGCAAGAGGATTACTGGTAATCTTA 60.470 40.741 23.87 0.00 46.48 2.10
3404 4680 8.362464 ACTTTCTCTTGGAAGTTTAACCTTTT 57.638 30.769 0.00 0.00 35.16 2.27
3605 4885 6.340522 CCTGAACCAATTCACTGAAAAGTTT 58.659 36.000 0.00 0.00 40.01 2.66
3771 5052 6.349033 CGTCGAAAACCTGGAAATTTAGGAAT 60.349 38.462 13.00 0.47 37.52 3.01
3772 5053 7.148373 CGTCGAAAACCTGGAAATTTAGGAATA 60.148 37.037 13.00 0.00 37.52 1.75
3998 5279 8.908786 ACCCTTCAATCAATATACATGTAGTG 57.091 34.615 11.91 9.27 0.00 2.74
4037 5318 5.348164 ACACCTAACAAAGTTGTCAATTGC 58.652 37.500 0.00 0.00 41.31 3.56
4516 6107 6.355397 CATTAGTAATGCTCAAGGTCACAG 57.645 41.667 9.88 0.00 31.20 3.66
4519 6110 2.936919 AATGCTCAAGGTCACAGTCA 57.063 45.000 0.00 0.00 0.00 3.41
4525 6116 3.732212 CTCAAGGTCACAGTCATGTTCA 58.268 45.455 0.00 0.00 37.65 3.18
4593 6246 1.812571 GTCATGCAACAAGGGTCGATT 59.187 47.619 0.00 0.00 0.00 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 2.274432 CTACCGAAAAGGGGCCCC 59.726 66.667 35.90 35.90 46.96 5.80
7 8 2.274432 CCTACCGAAAAGGGGCCC 59.726 66.667 17.12 17.12 46.96 5.80
8 9 1.077930 GACCTACCGAAAAGGGGCC 60.078 63.158 0.00 0.00 46.96 5.80
9 10 0.327259 AAGACCTACCGAAAAGGGGC 59.673 55.000 3.24 0.00 46.96 5.80
10 11 1.339727 CCAAGACCTACCGAAAAGGGG 60.340 57.143 3.24 0.00 46.96 4.79
11 12 1.949079 GCCAAGACCTACCGAAAAGGG 60.949 57.143 3.24 0.00 46.96 3.95
13 14 2.474410 AGCCAAGACCTACCGAAAAG 57.526 50.000 0.00 0.00 0.00 2.27
14 15 2.105134 TGAAGCCAAGACCTACCGAAAA 59.895 45.455 0.00 0.00 0.00 2.29
15 16 1.695242 TGAAGCCAAGACCTACCGAAA 59.305 47.619 0.00 0.00 0.00 3.46
16 17 1.275291 CTGAAGCCAAGACCTACCGAA 59.725 52.381 0.00 0.00 0.00 4.30
17 18 0.895530 CTGAAGCCAAGACCTACCGA 59.104 55.000 0.00 0.00 0.00 4.69
18 19 0.895530 TCTGAAGCCAAGACCTACCG 59.104 55.000 0.00 0.00 0.00 4.02
19 20 3.418684 TTTCTGAAGCCAAGACCTACC 57.581 47.619 0.00 0.00 0.00 3.18
20 21 5.249420 AGAATTTCTGAAGCCAAGACCTAC 58.751 41.667 0.00 0.00 0.00 3.18
21 22 5.505181 AGAATTTCTGAAGCCAAGACCTA 57.495 39.130 0.00 0.00 0.00 3.08
22 23 4.379302 AGAATTTCTGAAGCCAAGACCT 57.621 40.909 0.00 0.00 0.00 3.85
23 24 6.765915 ATAAGAATTTCTGAAGCCAAGACC 57.234 37.500 0.00 0.00 0.00 3.85
27 28 9.561069 GGAGTATATAAGAATTTCTGAAGCCAA 57.439 33.333 0.00 0.00 0.00 4.52
28 29 8.938883 AGGAGTATATAAGAATTTCTGAAGCCA 58.061 33.333 0.00 0.00 0.00 4.75
60 61 9.244799 GAACGAAACTTTGTGAGGAATTTTTAT 57.755 29.630 0.00 0.00 0.00 1.40
61 62 7.703197 GGAACGAAACTTTGTGAGGAATTTTTA 59.297 33.333 0.00 0.00 0.00 1.52
62 63 6.533723 GGAACGAAACTTTGTGAGGAATTTTT 59.466 34.615 0.00 0.00 0.00 1.94
63 64 6.040247 GGAACGAAACTTTGTGAGGAATTTT 58.960 36.000 0.00 0.00 0.00 1.82
64 65 5.126384 TGGAACGAAACTTTGTGAGGAATTT 59.874 36.000 0.00 0.00 0.00 1.82
65 66 4.642885 TGGAACGAAACTTTGTGAGGAATT 59.357 37.500 0.00 0.00 0.00 2.17
66 67 4.204012 TGGAACGAAACTTTGTGAGGAAT 58.796 39.130 0.00 0.00 0.00 3.01
67 68 3.611970 TGGAACGAAACTTTGTGAGGAA 58.388 40.909 0.00 0.00 0.00 3.36
68 69 3.269538 TGGAACGAAACTTTGTGAGGA 57.730 42.857 0.00 0.00 0.00 3.71
69 70 4.537015 GAATGGAACGAAACTTTGTGAGG 58.463 43.478 0.00 0.00 0.00 3.86
70 71 4.537015 GGAATGGAACGAAACTTTGTGAG 58.463 43.478 0.00 0.00 0.00 3.51
71 72 3.002862 CGGAATGGAACGAAACTTTGTGA 59.997 43.478 0.00 0.00 0.00 3.58
72 73 3.002862 TCGGAATGGAACGAAACTTTGTG 59.997 43.478 0.00 0.00 36.01 3.33
73 74 3.207778 TCGGAATGGAACGAAACTTTGT 58.792 40.909 0.00 0.00 36.01 2.83
74 75 3.496884 TCTCGGAATGGAACGAAACTTTG 59.503 43.478 0.00 0.00 38.79 2.77
75 76 3.735591 TCTCGGAATGGAACGAAACTTT 58.264 40.909 0.00 0.00 38.79 2.66
76 77 3.396260 TCTCGGAATGGAACGAAACTT 57.604 42.857 0.00 0.00 38.79 2.66
77 78 3.064931 GTTCTCGGAATGGAACGAAACT 58.935 45.455 0.00 0.00 38.79 2.66
78 79 3.064931 AGTTCTCGGAATGGAACGAAAC 58.935 45.455 0.00 0.00 44.33 2.78
79 80 3.396260 AGTTCTCGGAATGGAACGAAA 57.604 42.857 0.00 0.00 44.33 3.46
80 81 3.396260 AAGTTCTCGGAATGGAACGAA 57.604 42.857 0.00 0.00 44.33 3.85
81 82 3.396260 AAAGTTCTCGGAATGGAACGA 57.604 42.857 0.00 0.00 44.33 3.85
82 83 5.796350 ATAAAAGTTCTCGGAATGGAACG 57.204 39.130 0.00 0.00 44.33 3.95
83 84 7.750903 CAGAAATAAAAGTTCTCGGAATGGAAC 59.249 37.037 0.00 0.00 41.24 3.62
84 85 7.574967 GCAGAAATAAAAGTTCTCGGAATGGAA 60.575 37.037 0.00 0.00 32.96 3.53
85 86 6.128007 GCAGAAATAAAAGTTCTCGGAATGGA 60.128 38.462 0.00 0.00 32.96 3.41
86 87 6.030228 GCAGAAATAAAAGTTCTCGGAATGG 58.970 40.000 0.00 0.00 32.96 3.16
87 88 6.524586 GTGCAGAAATAAAAGTTCTCGGAATG 59.475 38.462 0.00 0.00 32.96 2.67
88 89 6.206634 TGTGCAGAAATAAAAGTTCTCGGAAT 59.793 34.615 0.00 0.00 32.96 3.01
89 90 5.529430 TGTGCAGAAATAAAAGTTCTCGGAA 59.471 36.000 0.00 0.00 32.96 4.30
90 91 5.060506 TGTGCAGAAATAAAAGTTCTCGGA 58.939 37.500 0.00 0.00 32.96 4.55
91 92 5.356882 TGTGCAGAAATAAAAGTTCTCGG 57.643 39.130 0.00 0.00 32.96 4.63
92 93 7.678194 TTTTGTGCAGAAATAAAAGTTCTCG 57.322 32.000 10.13 0.00 32.96 4.04
93 94 8.868916 TGTTTTTGTGCAGAAATAAAAGTTCTC 58.131 29.630 10.13 0.00 32.96 2.87
94 95 8.770438 TGTTTTTGTGCAGAAATAAAAGTTCT 57.230 26.923 10.13 0.00 35.69 3.01
95 96 9.261318 GTTGTTTTTGTGCAGAAATAAAAGTTC 57.739 29.630 10.13 0.00 0.00 3.01
96 97 8.778358 TGTTGTTTTTGTGCAGAAATAAAAGTT 58.222 25.926 10.13 0.00 0.00 2.66
97 98 8.227119 GTGTTGTTTTTGTGCAGAAATAAAAGT 58.773 29.630 10.13 0.00 0.00 2.66
98 99 7.691877 GGTGTTGTTTTTGTGCAGAAATAAAAG 59.308 33.333 10.13 0.00 0.00 2.27
99 100 7.173218 TGGTGTTGTTTTTGTGCAGAAATAAAA 59.827 29.630 10.13 4.13 0.00 1.52
100 101 6.650807 TGGTGTTGTTTTTGTGCAGAAATAAA 59.349 30.769 10.13 0.00 0.00 1.40
101 102 6.166279 TGGTGTTGTTTTTGTGCAGAAATAA 58.834 32.000 10.13 5.07 0.00 1.40
102 103 5.724328 TGGTGTTGTTTTTGTGCAGAAATA 58.276 33.333 10.13 2.40 0.00 1.40
103 104 4.573900 TGGTGTTGTTTTTGTGCAGAAAT 58.426 34.783 10.13 0.00 0.00 2.17
104 105 3.995199 TGGTGTTGTTTTTGTGCAGAAA 58.005 36.364 4.66 4.66 0.00 2.52
105 106 3.667497 TGGTGTTGTTTTTGTGCAGAA 57.333 38.095 0.00 0.00 0.00 3.02
106 107 3.519579 CATGGTGTTGTTTTTGTGCAGA 58.480 40.909 0.00 0.00 0.00 4.26
107 108 2.608546 CCATGGTGTTGTTTTTGTGCAG 59.391 45.455 2.57 0.00 0.00 4.41
108 109 2.027745 ACCATGGTGTTGTTTTTGTGCA 60.028 40.909 18.99 0.00 0.00 4.57
109 110 2.626840 ACCATGGTGTTGTTTTTGTGC 58.373 42.857 18.99 0.00 0.00 4.57
110 111 5.004922 ACTACCATGGTGTTGTTTTTGTG 57.995 39.130 28.17 5.23 0.00 3.33
111 112 5.420739 AGAACTACCATGGTGTTGTTTTTGT 59.579 36.000 28.17 7.82 34.98 2.83
112 113 5.748152 CAGAACTACCATGGTGTTGTTTTTG 59.252 40.000 28.17 21.81 34.98 2.44
113 114 5.681179 GCAGAACTACCATGGTGTTGTTTTT 60.681 40.000 28.17 16.35 34.98 1.94
114 115 4.202111 GCAGAACTACCATGGTGTTGTTTT 60.202 41.667 28.17 19.18 34.98 2.43
115 116 3.317993 GCAGAACTACCATGGTGTTGTTT 59.682 43.478 28.17 12.20 34.98 2.83
116 117 2.884639 GCAGAACTACCATGGTGTTGTT 59.115 45.455 28.17 25.31 37.00 2.83
117 118 2.106511 AGCAGAACTACCATGGTGTTGT 59.893 45.455 28.17 21.97 0.00 3.32
118 119 2.485426 CAGCAGAACTACCATGGTGTTG 59.515 50.000 28.17 18.42 37.59 3.33
119 120 2.371841 TCAGCAGAACTACCATGGTGTT 59.628 45.455 28.17 25.64 41.82 3.32
120 121 1.977854 TCAGCAGAACTACCATGGTGT 59.022 47.619 28.17 19.28 41.82 4.16
121 122 2.234661 TCTCAGCAGAACTACCATGGTG 59.765 50.000 28.17 18.63 42.34 4.17
122 123 2.540383 TCTCAGCAGAACTACCATGGT 58.460 47.619 23.55 23.55 0.00 3.55
123 124 3.616956 TTCTCAGCAGAACTACCATGG 57.383 47.619 11.19 11.19 33.38 3.66
132 133 2.432146 ACTGACACTGTTCTCAGCAGAA 59.568 45.455 10.73 0.00 44.77 3.02
133 134 2.034878 ACTGACACTGTTCTCAGCAGA 58.965 47.619 10.73 0.00 44.77 4.26
134 135 2.522836 ACTGACACTGTTCTCAGCAG 57.477 50.000 10.73 0.00 44.77 4.24
135 136 2.799562 CGAACTGACACTGTTCTCAGCA 60.800 50.000 15.41 0.00 44.77 4.41
136 137 1.789464 CGAACTGACACTGTTCTCAGC 59.211 52.381 15.41 0.00 44.77 4.26
137 138 2.398498 CCGAACTGACACTGTTCTCAG 58.602 52.381 15.41 9.65 46.18 3.35
138 139 1.068588 CCCGAACTGACACTGTTCTCA 59.931 52.381 15.41 0.00 39.19 3.27
139 140 1.605712 CCCCGAACTGACACTGTTCTC 60.606 57.143 15.41 0.00 39.19 2.87
140 141 0.393077 CCCCGAACTGACACTGTTCT 59.607 55.000 15.41 0.00 39.19 3.01
141 142 0.106149 ACCCCGAACTGACACTGTTC 59.894 55.000 10.09 10.09 38.40 3.18
142 143 0.544697 AACCCCGAACTGACACTGTT 59.455 50.000 0.00 0.00 0.00 3.16
143 144 1.343465 CTAACCCCGAACTGACACTGT 59.657 52.381 0.00 0.00 0.00 3.55
144 145 1.343465 ACTAACCCCGAACTGACACTG 59.657 52.381 0.00 0.00 0.00 3.66
145 146 1.713297 ACTAACCCCGAACTGACACT 58.287 50.000 0.00 0.00 0.00 3.55
146 147 2.538512 AACTAACCCCGAACTGACAC 57.461 50.000 0.00 0.00 0.00 3.67
147 148 3.564053 AAAACTAACCCCGAACTGACA 57.436 42.857 0.00 0.00 0.00 3.58
148 149 5.702209 TGAATAAAACTAACCCCGAACTGAC 59.298 40.000 0.00 0.00 0.00 3.51
149 150 5.867330 TGAATAAAACTAACCCCGAACTGA 58.133 37.500 0.00 0.00 0.00 3.41
150 151 6.563222 TTGAATAAAACTAACCCCGAACTG 57.437 37.500 0.00 0.00 0.00 3.16
151 152 7.449086 TGATTTGAATAAAACTAACCCCGAACT 59.551 33.333 0.00 0.00 0.00 3.01
152 153 7.595604 TGATTTGAATAAAACTAACCCCGAAC 58.404 34.615 0.00 0.00 0.00 3.95
153 154 7.762588 TGATTTGAATAAAACTAACCCCGAA 57.237 32.000 0.00 0.00 0.00 4.30
154 155 7.948034 ATGATTTGAATAAAACTAACCCCGA 57.052 32.000 0.00 0.00 0.00 5.14
155 156 8.679100 TGTATGATTTGAATAAAACTAACCCCG 58.321 33.333 0.00 0.00 0.00 5.73
184 185 9.284968 CACTCTTCCTTTTATTTTGGACTCTAA 57.715 33.333 0.00 0.00 0.00 2.10
185 186 8.437575 ACACTCTTCCTTTTATTTTGGACTCTA 58.562 33.333 0.00 0.00 0.00 2.43
186 187 7.290813 ACACTCTTCCTTTTATTTTGGACTCT 58.709 34.615 0.00 0.00 0.00 3.24
187 188 7.511959 ACACTCTTCCTTTTATTTTGGACTC 57.488 36.000 0.00 0.00 0.00 3.36
188 189 7.898014 AACACTCTTCCTTTTATTTTGGACT 57.102 32.000 0.00 0.00 0.00 3.85
189 190 8.297426 CCTAACACTCTTCCTTTTATTTTGGAC 58.703 37.037 0.00 0.00 0.00 4.02
190 191 8.221944 TCCTAACACTCTTCCTTTTATTTTGGA 58.778 33.333 0.00 0.00 0.00 3.53
191 192 8.404107 TCCTAACACTCTTCCTTTTATTTTGG 57.596 34.615 0.00 0.00 0.00 3.28
198 199 9.862149 TCTATTTTTCCTAACACTCTTCCTTTT 57.138 29.630 0.00 0.00 0.00 2.27
211 212 9.542462 CGTCTCCAACATATCTATTTTTCCTAA 57.458 33.333 0.00 0.00 0.00 2.69
212 213 8.701895 ACGTCTCCAACATATCTATTTTTCCTA 58.298 33.333 0.00 0.00 0.00 2.94
213 214 7.565680 ACGTCTCCAACATATCTATTTTTCCT 58.434 34.615 0.00 0.00 0.00 3.36
214 215 7.787725 ACGTCTCCAACATATCTATTTTTCC 57.212 36.000 0.00 0.00 0.00 3.13
218 219 9.698309 CTTGATACGTCTCCAACATATCTATTT 57.302 33.333 0.00 0.00 34.78 1.40
219 220 8.861086 ACTTGATACGTCTCCAACATATCTATT 58.139 33.333 0.00 0.00 34.78 1.73
220 221 8.300286 CACTTGATACGTCTCCAACATATCTAT 58.700 37.037 0.00 0.00 34.78 1.98
221 222 7.255486 CCACTTGATACGTCTCCAACATATCTA 60.255 40.741 0.00 0.00 34.78 1.98
222 223 6.461648 CCACTTGATACGTCTCCAACATATCT 60.462 42.308 0.00 0.00 34.78 1.98
223 224 5.692204 CCACTTGATACGTCTCCAACATATC 59.308 44.000 0.00 0.00 34.38 1.63
224 225 5.601662 CCACTTGATACGTCTCCAACATAT 58.398 41.667 0.00 0.00 0.00 1.78
225 226 4.679639 GCCACTTGATACGTCTCCAACATA 60.680 45.833 0.00 0.00 0.00 2.29
226 227 3.861840 CCACTTGATACGTCTCCAACAT 58.138 45.455 0.00 0.00 0.00 2.71
227 228 2.611971 GCCACTTGATACGTCTCCAACA 60.612 50.000 0.00 0.00 0.00 3.33
228 229 2.000447 GCCACTTGATACGTCTCCAAC 59.000 52.381 0.00 0.00 0.00 3.77
229 230 1.066430 GGCCACTTGATACGTCTCCAA 60.066 52.381 0.00 0.00 0.00 3.53
230 231 0.535335 GGCCACTTGATACGTCTCCA 59.465 55.000 0.00 0.00 0.00 3.86
231 232 0.535335 TGGCCACTTGATACGTCTCC 59.465 55.000 0.00 0.00 0.00 3.71
232 233 2.205074 CATGGCCACTTGATACGTCTC 58.795 52.381 8.16 0.00 0.00 3.36
233 234 1.555075 ACATGGCCACTTGATACGTCT 59.445 47.619 8.16 0.00 0.00 4.18
234 235 1.665679 CACATGGCCACTTGATACGTC 59.334 52.381 8.16 0.00 0.00 4.34
235 236 1.003118 ACACATGGCCACTTGATACGT 59.997 47.619 19.98 0.00 0.00 3.57
236 237 1.665679 GACACATGGCCACTTGATACG 59.334 52.381 19.98 5.61 0.00 3.06
237 238 1.665679 CGACACATGGCCACTTGATAC 59.334 52.381 19.98 10.61 0.00 2.24
238 239 1.552792 TCGACACATGGCCACTTGATA 59.447 47.619 19.98 4.29 0.00 2.15
239 240 0.324614 TCGACACATGGCCACTTGAT 59.675 50.000 19.98 5.20 0.00 2.57
240 241 0.107643 TTCGACACATGGCCACTTGA 59.892 50.000 19.98 5.29 0.00 3.02
241 242 0.950836 TTTCGACACATGGCCACTTG 59.049 50.000 8.16 11.24 0.00 3.16
242 243 1.238439 CTTTCGACACATGGCCACTT 58.762 50.000 8.16 0.00 0.00 3.16
324 325 6.091169 CGCCATGTGAAATTTGAATTTAAGCT 59.909 34.615 0.00 0.00 38.64 3.74
330 331 4.270245 ACCGCCATGTGAAATTTGAATT 57.730 36.364 0.00 0.00 0.00 2.17
341 342 0.955178 TTGTTGGTTACCGCCATGTG 59.045 50.000 0.00 0.00 38.48 3.21
359 360 5.827797 TCTAGTTTCTTGCAGTTGGTCATTT 59.172 36.000 0.00 0.00 0.00 2.32
397 398 6.489127 TTTGGATTCGCGGTAAATATATGG 57.511 37.500 6.13 0.00 0.00 2.74
469 470 1.967779 TCCACGTCTGGTTGATCTTCA 59.032 47.619 0.00 0.00 38.90 3.02
483 484 6.399743 AGGTTGTTTTTGTAAATTTCCACGT 58.600 32.000 0.00 0.00 0.00 4.49
496 497 6.031471 AGTACGCAAAGTTAGGTTGTTTTTG 58.969 36.000 0.00 0.00 33.18 2.44
576 1819 3.558931 TGACATTTCTGTGACACCTGT 57.441 42.857 2.45 0.00 35.14 4.00
601 1844 1.677633 TAGCTCTTTTTGCCCGGCC 60.678 57.895 7.03 0.00 0.00 6.13
737 1999 0.549169 TTCTCGTCCCCCTCCCATTT 60.549 55.000 0.00 0.00 0.00 2.32
740 2002 1.151987 TTTTCTCGTCCCCCTCCCA 60.152 57.895 0.00 0.00 0.00 4.37
750 2012 2.663196 CCGCCTCCCTTTTCTCGT 59.337 61.111 0.00 0.00 0.00 4.18
804 2066 1.391933 GGGAAAATGCCCGTGATCCC 61.392 60.000 0.00 0.00 38.58 3.85
870 2132 3.181417 TGGATGGACGAGGGAGAAGATAT 60.181 47.826 0.00 0.00 0.00 1.63
876 2138 0.976073 GGTTGGATGGACGAGGGAGA 60.976 60.000 0.00 0.00 0.00 3.71
1260 2528 3.018856 TGATCGAGCAAAGCAATCCATT 58.981 40.909 0.00 0.00 0.00 3.16
1312 2580 3.804325 CCCACTTTCAGTCGTATATGCTG 59.196 47.826 9.02 9.02 0.00 4.41
1411 2680 7.437267 CCATAACAATTAACTAGTACTGGTCCG 59.563 40.741 12.75 2.67 0.00 4.79
1553 2829 0.798159 TCTGTGCATTTACAGCAGCG 59.202 50.000 0.00 0.00 45.94 5.18
1595 2871 6.349033 GGTTGTCAAACGCATTACCTATCTTT 60.349 38.462 0.00 0.00 37.15 2.52
1601 2877 2.552315 CTGGTTGTCAAACGCATTACCT 59.448 45.455 0.00 0.00 37.15 3.08
1699 2975 2.027377 ACAAGAAGGCACATGAGAGAGG 60.027 50.000 0.00 0.00 0.00 3.69
1937 3213 7.642194 TGCAAGATAGTTCAAAGTTTAAACACG 59.358 33.333 20.06 8.02 0.00 4.49
2140 3416 4.284234 TGAAGATCAGTGTCCATCAGTTCA 59.716 41.667 0.00 0.00 0.00 3.18
2194 3470 4.679373 ACATACCTGACAGTGATCATCC 57.321 45.455 0.00 0.00 0.00 3.51
2238 3514 4.401022 AGAATGTTTGGACTGATGCTGAA 58.599 39.130 0.00 0.00 0.00 3.02
2260 3536 5.009610 GTGAAAGGAAAGCTGACCAATTGTA 59.990 40.000 4.43 0.00 0.00 2.41
2401 3677 6.419484 TCTCCAATCTTGAGTTCACACTTA 57.581 37.500 0.00 0.00 31.22 2.24
2446 3722 4.159321 TCCATCATGAAGTCAGTCTCAGTC 59.841 45.833 0.00 0.00 0.00 3.51
2915 4191 2.100584 TCACATGCTTGGACCAAAACAC 59.899 45.455 8.59 0.00 0.00 3.32
3279 4555 5.473162 ACACGATTCTGAAATGATGGTTCAA 59.527 36.000 0.00 0.00 34.68 2.69
3517 4797 4.225942 TCTTCCTCAGTAAATGATGGCTGT 59.774 41.667 0.00 0.00 37.28 4.40
3605 4885 8.420222 TGAAATTGCTTCTTTTTCTACATTGGA 58.580 29.630 0.00 0.00 34.86 3.53
3771 5052 9.853555 AACAAATTATTGATCAAGCGTTCATTA 57.146 25.926 14.54 0.00 38.94 1.90
3772 5053 8.761575 AACAAATTATTGATCAAGCGTTCATT 57.238 26.923 14.54 1.34 38.94 2.57
4231 5517 3.753797 GAGAACTTTGGGTGTGATCCTTC 59.246 47.826 0.00 0.00 0.00 3.46
4363 5954 9.203421 GATTGTTTAGTAAATTGTTTTGGGAGG 57.797 33.333 0.00 0.00 0.00 4.30
4498 6089 3.664107 TGACTGTGACCTTGAGCATTAC 58.336 45.455 0.00 0.00 0.00 1.89
4505 6096 3.732212 CTGAACATGACTGTGACCTTGA 58.268 45.455 0.00 0.00 35.22 3.02
4516 6107 4.488126 TTTGTTAGCTGCTGAACATGAC 57.512 40.909 13.43 0.58 35.57 3.06
4519 6110 5.972107 AAGATTTGTTAGCTGCTGAACAT 57.028 34.783 13.43 5.34 35.57 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.