Multiple sequence alignment - TraesCS7A01G299000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G299000 chr7A 100.000 2907 0 0 1 2907 408612204 408609298 0.000000e+00 5369.0
1 TraesCS7A01G299000 chr7A 89.339 469 47 3 32 499 537907429 537906963 1.160000e-163 586.0
2 TraesCS7A01G299000 chr7A 90.661 257 19 4 1244 1497 477605420 477605166 1.290000e-88 337.0
3 TraesCS7A01G299000 chr4B 94.320 986 46 7 1926 2907 317038736 317037757 0.000000e+00 1502.0
4 TraesCS7A01G299000 chr4B 94.595 407 21 1 1020 1425 451441521 451441115 1.900000e-176 628.0
5 TraesCS7A01G299000 chr4B 78.312 770 86 56 758 1465 401592021 401592771 3.460000e-114 422.0
6 TraesCS7A01G299000 chr4B 100.000 39 0 0 1 39 650827202 650827240 4.020000e-09 73.1
7 TraesCS7A01G299000 chr5B 93.118 959 58 7 710 1662 279864982 279864026 0.000000e+00 1399.0
8 TraesCS7A01G299000 chr5B 88.213 806 73 18 2111 2907 51555843 51555051 0.000000e+00 942.0
9 TraesCS7A01G299000 chr5B 89.542 459 47 1 41 499 213990362 213990819 5.400000e-162 580.0
10 TraesCS7A01G299000 chr5B 82.135 459 63 16 1660 2108 51556405 51555956 2.730000e-100 375.0
11 TraesCS7A01G299000 chr5A 92.466 969 60 9 701 1662 630003603 630004565 0.000000e+00 1373.0
12 TraesCS7A01G299000 chr5A 90.066 302 26 2 1361 1662 156540466 156540169 3.510000e-104 388.0
13 TraesCS7A01G299000 chr5A 86.687 323 35 6 490 811 630003002 630003317 4.610000e-93 351.0
14 TraesCS7A01G299000 chr1B 94.384 730 22 5 1654 2374 163584308 163585027 0.000000e+00 1103.0
15 TraesCS7A01G299000 chr1B 95.504 645 23 4 1020 1662 399563699 399564339 0.000000e+00 1026.0
16 TraesCS7A01G299000 chr1B 90.653 781 51 12 2130 2905 383033049 383033812 0.000000e+00 1018.0
17 TraesCS7A01G299000 chr1B 100.000 42 0 0 1 42 362659504 362659463 8.640000e-11 78.7
18 TraesCS7A01G299000 chr1B 100.000 39 0 0 1 39 46869108 46869146 4.020000e-09 73.1
19 TraesCS7A01G299000 chr3B 90.037 803 58 12 2109 2905 433640477 433641263 0.000000e+00 1020.0
20 TraesCS7A01G299000 chr3B 88.433 804 71 16 2111 2907 446516349 446517137 0.000000e+00 950.0
21 TraesCS7A01G299000 chr3B 81.169 462 63 18 1660 2108 446515786 446516236 1.660000e-92 350.0
22 TraesCS7A01G299000 chr2B 95.349 645 23 6 1020 1662 598660800 598661439 0.000000e+00 1018.0
23 TraesCS7A01G299000 chr2B 88.806 804 70 13 2111 2907 355948389 355949179 0.000000e+00 968.0
24 TraesCS7A01G299000 chr2B 86.328 256 32 3 1660 1913 355947828 355948082 2.850000e-70 276.0
25 TraesCS7A01G299000 chr2B 89.950 199 16 4 1657 1853 316008556 316008360 1.340000e-63 254.0
26 TraesCS7A01G299000 chr2B 88.435 147 16 1 1493 1639 279725047 279725192 2.980000e-40 176.0
27 TraesCS7A01G299000 chr2B 89.844 128 11 2 1981 2108 355948152 355948277 2.320000e-36 163.0
28 TraesCS7A01G299000 chr2B 84.677 124 19 0 805 928 435238470 435238593 1.090000e-24 124.0
29 TraesCS7A01G299000 chr2B 74.184 337 57 24 682 1007 435238496 435238813 2.370000e-21 113.0
30 TraesCS7A01G299000 chr2B 100.000 37 0 0 2 38 449115669 449115705 5.200000e-08 69.4
31 TraesCS7A01G299000 chr7B 89.513 801 55 17 2111 2905 131527637 131526860 0.000000e+00 987.0
32 TraesCS7A01G299000 chr6B 90.237 758 60 10 1914 2668 223038595 223037849 0.000000e+00 977.0
33 TraesCS7A01G299000 chr6B 89.163 526 44 9 761 1280 312251751 312251233 0.000000e+00 643.0
34 TraesCS7A01G299000 chr6B 89.189 259 16 5 1657 1913 223038887 223038639 2.170000e-81 313.0
35 TraesCS7A01G299000 chr6B 74.263 373 57 34 647 1007 690550882 690550537 1.410000e-23 121.0
36 TraesCS7A01G299000 chr6B 85.714 112 15 1 1511 1621 457388501 457388612 1.830000e-22 117.0
37 TraesCS7A01G299000 chr5D 89.637 772 60 17 2144 2907 152540586 152541345 0.000000e+00 965.0
38 TraesCS7A01G299000 chr5D 89.062 256 24 4 1660 1913 317669660 317669407 6.050000e-82 315.0
39 TraesCS7A01G299000 chr5D 85.930 199 25 3 1910 2108 317669367 317669172 2.940000e-50 209.0
40 TraesCS7A01G299000 chr5D 86.607 112 14 1 1511 1621 392059542 392059653 3.930000e-24 122.0
41 TraesCS7A01G299000 chr5D 94.203 69 3 1 2040 2108 152540511 152540578 1.420000e-18 104.0
42 TraesCS7A01G299000 chr5D 100.000 40 0 0 3 42 331041087 331041048 1.120000e-09 75.0
43 TraesCS7A01G299000 chr4D 90.812 468 39 4 32 499 379307740 379308203 8.850000e-175 623.0
44 TraesCS7A01G299000 chr4D 77.778 855 106 65 664 1465 256740477 256739654 1.590000e-122 449.0
45 TraesCS7A01G299000 chr4D 76.000 275 37 26 664 932 256740530 256740279 6.580000e-22 115.0
46 TraesCS7A01G299000 chr2D 90.618 469 39 5 32 499 352130292 352129828 4.120000e-173 617.0
47 TraesCS7A01G299000 chr2D 90.438 251 21 3 1248 1497 91927202 91927450 7.770000e-86 327.0
48 TraesCS7A01G299000 chr3D 90.733 464 39 3 37 499 598911167 598910707 1.480000e-172 616.0
49 TraesCS7A01G299000 chr3D 89.339 469 47 3 31 499 27090703 27091168 1.160000e-163 586.0
50 TraesCS7A01G299000 chr7D 89.957 468 44 3 32 499 140011677 140012141 4.140000e-168 601.0
51 TraesCS7A01G299000 chr7D 89.552 469 44 4 32 499 29394013 29393549 8.970000e-165 590.0
52 TraesCS7A01G299000 chr6D 89.979 469 42 5 32 499 381418767 381419231 4.140000e-168 601.0
53 TraesCS7A01G299000 chr6D 96.624 237 5 3 1426 1662 173979138 173978905 9.770000e-105 390.0
54 TraesCS7A01G299000 chr6A 91.339 254 17 4 1247 1497 502271039 502270788 2.770000e-90 342.0
55 TraesCS7A01G299000 chrUn 90.438 251 21 3 1248 1497 380014149 380013901 7.770000e-86 327.0
56 TraesCS7A01G299000 chrUn 100.000 39 0 0 1 39 290926030 290925992 4.020000e-09 73.1
57 TraesCS7A01G299000 chrUn 100.000 39 0 0 1 39 321343396 321343358 4.020000e-09 73.1
58 TraesCS7A01G299000 chrUn 100.000 39 0 0 1 39 351484819 351484857 4.020000e-09 73.1
59 TraesCS7A01G299000 chrUn 100.000 39 0 0 1 39 351512693 351512655 4.020000e-09 73.1
60 TraesCS7A01G299000 chr1A 87.113 194 20 5 1660 1850 477509688 477509497 6.310000e-52 215.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G299000 chr7A 408609298 408612204 2906 True 5369.0 5369 100.0000 1 2907 1 chr7A.!!$R1 2906
1 TraesCS7A01G299000 chr4B 317037757 317038736 979 True 1502.0 1502 94.3200 1926 2907 1 chr4B.!!$R1 981
2 TraesCS7A01G299000 chr4B 401592021 401592771 750 False 422.0 422 78.3120 758 1465 1 chr4B.!!$F1 707
3 TraesCS7A01G299000 chr5B 279864026 279864982 956 True 1399.0 1399 93.1180 710 1662 1 chr5B.!!$R1 952
4 TraesCS7A01G299000 chr5B 51555051 51556405 1354 True 658.5 942 85.1740 1660 2907 2 chr5B.!!$R2 1247
5 TraesCS7A01G299000 chr5A 630003002 630004565 1563 False 862.0 1373 89.5765 490 1662 2 chr5A.!!$F1 1172
6 TraesCS7A01G299000 chr1B 163584308 163585027 719 False 1103.0 1103 94.3840 1654 2374 1 chr1B.!!$F2 720
7 TraesCS7A01G299000 chr1B 399563699 399564339 640 False 1026.0 1026 95.5040 1020 1662 1 chr1B.!!$F4 642
8 TraesCS7A01G299000 chr1B 383033049 383033812 763 False 1018.0 1018 90.6530 2130 2905 1 chr1B.!!$F3 775
9 TraesCS7A01G299000 chr3B 433640477 433641263 786 False 1020.0 1020 90.0370 2109 2905 1 chr3B.!!$F1 796
10 TraesCS7A01G299000 chr3B 446515786 446517137 1351 False 650.0 950 84.8010 1660 2907 2 chr3B.!!$F2 1247
11 TraesCS7A01G299000 chr2B 598660800 598661439 639 False 1018.0 1018 95.3490 1020 1662 1 chr2B.!!$F3 642
12 TraesCS7A01G299000 chr2B 355947828 355949179 1351 False 469.0 968 88.3260 1660 2907 3 chr2B.!!$F4 1247
13 TraesCS7A01G299000 chr7B 131526860 131527637 777 True 987.0 987 89.5130 2111 2905 1 chr7B.!!$R1 794
14 TraesCS7A01G299000 chr6B 223037849 223038887 1038 True 645.0 977 89.7130 1657 2668 2 chr6B.!!$R3 1011
15 TraesCS7A01G299000 chr6B 312251233 312251751 518 True 643.0 643 89.1630 761 1280 1 chr6B.!!$R1 519
16 TraesCS7A01G299000 chr5D 152540511 152541345 834 False 534.5 965 91.9200 2040 2907 2 chr5D.!!$F2 867
17 TraesCS7A01G299000 chr4D 256739654 256740530 876 True 282.0 449 76.8890 664 1465 2 chr4D.!!$R1 801

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
105 106 0.106569 AATGGCGCCATTCTGGATGA 60.107 50.0 41.98 13.73 42.32 2.92 F
108 109 0.106708 GGCGCCATTCTGGATGAGTA 59.893 55.0 24.80 0.00 40.96 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1504 2098 1.418264 GACAAGGGCCTCTATCCTTCC 59.582 57.143 6.46 0.0 41.06 3.46 R
1922 2571 2.287547 GGACTGAAAATCGCAGCAAACA 60.288 45.455 0.00 0.0 36.86 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 4.834892 GCAACGCGCGCCATCAAT 62.835 61.111 32.58 5.07 0.00 2.57
29 30 2.945576 CAACGCGCGCCATCAATG 60.946 61.111 32.58 12.27 0.00 2.82
30 31 3.124270 AACGCGCGCCATCAATGA 61.124 55.556 32.58 0.00 0.00 2.57
31 32 2.472059 AACGCGCGCCATCAATGAT 61.472 52.632 32.58 2.28 0.00 2.45
32 33 2.127496 CGCGCGCCATCAATGATC 60.127 61.111 27.72 0.00 0.00 2.92
33 34 2.601398 CGCGCGCCATCAATGATCT 61.601 57.895 27.72 0.00 0.00 2.75
34 35 1.284297 CGCGCGCCATCAATGATCTA 61.284 55.000 27.72 0.00 0.00 1.98
35 36 0.441533 GCGCGCCATCAATGATCTAG 59.558 55.000 23.24 0.00 0.00 2.43
36 37 1.788258 CGCGCCATCAATGATCTAGT 58.212 50.000 0.00 0.00 0.00 2.57
37 38 2.926586 GCGCGCCATCAATGATCTAGTA 60.927 50.000 23.24 0.00 0.00 1.82
38 39 3.515630 CGCGCCATCAATGATCTAGTAT 58.484 45.455 0.00 0.00 0.00 2.12
39 40 3.305361 CGCGCCATCAATGATCTAGTATG 59.695 47.826 0.00 0.00 0.00 2.39
40 41 3.063180 GCGCCATCAATGATCTAGTATGC 59.937 47.826 0.00 0.00 0.00 3.14
41 42 4.248058 CGCCATCAATGATCTAGTATGCA 58.752 43.478 0.00 0.00 0.00 3.96
42 43 4.692155 CGCCATCAATGATCTAGTATGCAA 59.308 41.667 0.00 0.00 0.00 4.08
43 44 5.179929 CGCCATCAATGATCTAGTATGCAAA 59.820 40.000 0.00 0.00 0.00 3.68
44 45 6.128090 CGCCATCAATGATCTAGTATGCAAAT 60.128 38.462 0.00 0.00 0.00 2.32
45 46 7.027760 GCCATCAATGATCTAGTATGCAAATG 58.972 38.462 0.00 0.00 0.00 2.32
46 47 7.309012 GCCATCAATGATCTAGTATGCAAATGT 60.309 37.037 0.00 0.00 0.00 2.71
47 48 9.223099 CCATCAATGATCTAGTATGCAAATGTA 57.777 33.333 0.00 0.00 0.00 2.29
50 51 9.612066 TCAATGATCTAGTATGCAAATGTAACA 57.388 29.630 0.00 0.00 0.00 2.41
63 64 8.565896 TGCAAATGTAACATAACAGATTCTCT 57.434 30.769 0.00 0.00 31.70 3.10
64 65 9.013229 TGCAAATGTAACATAACAGATTCTCTT 57.987 29.630 0.00 0.00 31.70 2.85
76 77 9.853177 ATAACAGATTCTCTTAACCATTAAGGG 57.147 33.333 4.20 4.20 43.58 3.95
91 92 7.109501 ACCATTAAGGGATTTAACAAAATGGC 58.890 34.615 14.22 0.00 43.89 4.40
92 93 6.257630 CCATTAAGGGATTTAACAAAATGGCG 59.742 38.462 0.00 0.00 34.22 5.69
93 94 3.245518 AGGGATTTAACAAAATGGCGC 57.754 42.857 0.00 0.00 0.00 6.53
94 95 2.093711 AGGGATTTAACAAAATGGCGCC 60.094 45.455 22.73 22.73 0.00 6.53
95 96 2.354203 GGGATTTAACAAAATGGCGCCA 60.354 45.455 34.80 34.80 0.00 5.69
96 97 3.530535 GGATTTAACAAAATGGCGCCAT 58.469 40.909 36.10 36.10 38.46 4.40
98 99 4.033932 GGATTTAACAAAATGGCGCCATTC 59.966 41.667 45.33 31.75 44.86 2.67
99 100 3.951775 TTAACAAAATGGCGCCATTCT 57.048 38.095 45.33 35.18 44.86 2.40
100 101 2.083167 AACAAAATGGCGCCATTCTG 57.917 45.000 45.33 42.86 44.86 3.02
101 102 0.247185 ACAAAATGGCGCCATTCTGG 59.753 50.000 42.84 36.27 44.86 3.86
102 103 0.531657 CAAAATGGCGCCATTCTGGA 59.468 50.000 45.33 19.05 44.86 3.86
103 104 1.137479 CAAAATGGCGCCATTCTGGAT 59.863 47.619 45.33 31.09 44.86 3.41
104 105 0.748450 AAATGGCGCCATTCTGGATG 59.252 50.000 45.33 0.00 44.86 3.51
105 106 0.106569 AATGGCGCCATTCTGGATGA 60.107 50.000 41.98 13.73 42.32 2.92
106 107 0.536687 ATGGCGCCATTCTGGATGAG 60.537 55.000 36.10 0.00 40.96 2.90
107 108 1.153086 GGCGCCATTCTGGATGAGT 60.153 57.895 24.80 0.00 40.96 3.41
108 109 0.106708 GGCGCCATTCTGGATGAGTA 59.893 55.000 24.80 0.00 40.96 2.59
109 110 1.506493 GCGCCATTCTGGATGAGTAG 58.494 55.000 0.00 0.00 40.96 2.57
110 111 1.069204 GCGCCATTCTGGATGAGTAGA 59.931 52.381 0.00 0.00 40.96 2.59
111 112 2.483714 GCGCCATTCTGGATGAGTAGAA 60.484 50.000 0.00 0.00 40.96 2.10
112 113 3.797039 CGCCATTCTGGATGAGTAGAAA 58.203 45.455 0.00 0.00 40.96 2.52
113 114 4.191544 CGCCATTCTGGATGAGTAGAAAA 58.808 43.478 0.00 0.00 40.96 2.29
114 115 4.818546 CGCCATTCTGGATGAGTAGAAAAT 59.181 41.667 0.00 0.00 40.96 1.82
115 116 5.277683 CGCCATTCTGGATGAGTAGAAAATG 60.278 44.000 0.00 0.00 40.96 2.32
116 117 5.009410 GCCATTCTGGATGAGTAGAAAATGG 59.991 44.000 0.00 6.45 40.96 3.16
117 118 6.125029 CCATTCTGGATGAGTAGAAAATGGT 58.875 40.000 0.00 0.00 40.96 3.55
118 119 6.604795 CCATTCTGGATGAGTAGAAAATGGTT 59.395 38.462 0.00 0.00 40.96 3.67
119 120 7.201767 CCATTCTGGATGAGTAGAAAATGGTTC 60.202 40.741 0.00 0.00 40.96 3.62
120 121 6.373005 TCTGGATGAGTAGAAAATGGTTCA 57.627 37.500 0.00 0.00 0.00 3.18
121 122 6.962182 TCTGGATGAGTAGAAAATGGTTCAT 58.038 36.000 0.00 0.00 0.00 2.57
122 123 8.089625 TCTGGATGAGTAGAAAATGGTTCATA 57.910 34.615 0.00 0.00 0.00 2.15
123 124 8.717717 TCTGGATGAGTAGAAAATGGTTCATAT 58.282 33.333 0.00 0.00 0.00 1.78
124 125 9.347240 CTGGATGAGTAGAAAATGGTTCATATT 57.653 33.333 0.00 0.00 0.00 1.28
125 126 9.699410 TGGATGAGTAGAAAATGGTTCATATTT 57.301 29.630 0.00 0.00 0.00 1.40
137 138 8.827832 AATGGTTCATATTTTTCCTGATCTCA 57.172 30.769 0.00 0.00 0.00 3.27
138 139 9.430399 AATGGTTCATATTTTTCCTGATCTCAT 57.570 29.630 0.00 0.00 0.00 2.90
139 140 8.455903 TGGTTCATATTTTTCCTGATCTCATC 57.544 34.615 0.00 0.00 0.00 2.92
140 141 8.277197 TGGTTCATATTTTTCCTGATCTCATCT 58.723 33.333 0.00 0.00 0.00 2.90
141 142 9.784531 GGTTCATATTTTTCCTGATCTCATCTA 57.215 33.333 0.00 0.00 0.00 1.98
143 144 9.784531 TTCATATTTTTCCTGATCTCATCTACC 57.215 33.333 0.00 0.00 0.00 3.18
144 145 8.378565 TCATATTTTTCCTGATCTCATCTACCC 58.621 37.037 0.00 0.00 0.00 3.69
145 146 6.838401 ATTTTTCCTGATCTCATCTACCCT 57.162 37.500 0.00 0.00 0.00 4.34
146 147 6.642733 TTTTTCCTGATCTCATCTACCCTT 57.357 37.500 0.00 0.00 0.00 3.95
147 148 5.878406 TTTCCTGATCTCATCTACCCTTC 57.122 43.478 0.00 0.00 0.00 3.46
148 149 4.823364 TCCTGATCTCATCTACCCTTCT 57.177 45.455 0.00 0.00 0.00 2.85
149 150 5.932027 TCCTGATCTCATCTACCCTTCTA 57.068 43.478 0.00 0.00 0.00 2.10
150 151 6.476409 TCCTGATCTCATCTACCCTTCTAT 57.524 41.667 0.00 0.00 0.00 1.98
151 152 7.590359 TCCTGATCTCATCTACCCTTCTATA 57.410 40.000 0.00 0.00 0.00 1.31
152 153 8.181114 TCCTGATCTCATCTACCCTTCTATAT 57.819 38.462 0.00 0.00 0.00 0.86
153 154 8.058235 TCCTGATCTCATCTACCCTTCTATATG 58.942 40.741 0.00 0.00 0.00 1.78
154 155 7.838696 CCTGATCTCATCTACCCTTCTATATGT 59.161 40.741 0.00 0.00 0.00 2.29
155 156 8.815565 TGATCTCATCTACCCTTCTATATGTC 57.184 38.462 0.00 0.00 0.00 3.06
156 157 8.394040 TGATCTCATCTACCCTTCTATATGTCA 58.606 37.037 0.00 0.00 0.00 3.58
157 158 8.588290 ATCTCATCTACCCTTCTATATGTCAC 57.412 38.462 0.00 0.00 0.00 3.67
158 159 6.655425 TCTCATCTACCCTTCTATATGTCACG 59.345 42.308 0.00 0.00 0.00 4.35
159 160 6.304624 TCATCTACCCTTCTATATGTCACGT 58.695 40.000 0.00 0.00 0.00 4.49
160 161 6.776116 TCATCTACCCTTCTATATGTCACGTT 59.224 38.462 0.00 0.00 0.00 3.99
161 162 6.387041 TCTACCCTTCTATATGTCACGTTG 57.613 41.667 0.00 0.00 0.00 4.10
162 163 5.889853 TCTACCCTTCTATATGTCACGTTGT 59.110 40.000 0.00 0.00 0.00 3.32
163 164 5.007385 ACCCTTCTATATGTCACGTTGTC 57.993 43.478 0.00 0.00 0.00 3.18
164 165 4.710375 ACCCTTCTATATGTCACGTTGTCT 59.290 41.667 0.00 0.00 0.00 3.41
165 166 5.889853 ACCCTTCTATATGTCACGTTGTCTA 59.110 40.000 0.00 0.00 0.00 2.59
166 167 6.039493 ACCCTTCTATATGTCACGTTGTCTAG 59.961 42.308 0.00 0.00 0.00 2.43
167 168 6.039493 CCCTTCTATATGTCACGTTGTCTAGT 59.961 42.308 0.00 0.00 0.00 2.57
168 169 6.913132 CCTTCTATATGTCACGTTGTCTAGTG 59.087 42.308 0.00 0.00 39.55 2.74
169 170 6.997239 TCTATATGTCACGTTGTCTAGTGT 57.003 37.500 0.00 0.00 39.25 3.55
170 171 7.387119 TCTATATGTCACGTTGTCTAGTGTT 57.613 36.000 0.00 0.00 39.25 3.32
171 172 8.496707 TCTATATGTCACGTTGTCTAGTGTTA 57.503 34.615 0.00 0.00 39.25 2.41
172 173 8.610035 TCTATATGTCACGTTGTCTAGTGTTAG 58.390 37.037 0.00 0.00 39.25 2.34
173 174 4.906065 TGTCACGTTGTCTAGTGTTAGT 57.094 40.909 0.00 0.00 39.25 2.24
174 175 4.603985 TGTCACGTTGTCTAGTGTTAGTG 58.396 43.478 0.00 0.00 39.25 2.74
175 176 3.979495 GTCACGTTGTCTAGTGTTAGTGG 59.021 47.826 0.00 0.00 39.25 4.00
176 177 3.884693 TCACGTTGTCTAGTGTTAGTGGA 59.115 43.478 0.00 0.00 39.25 4.02
177 178 4.521639 TCACGTTGTCTAGTGTTAGTGGAT 59.478 41.667 0.00 0.00 39.25 3.41
178 179 5.010314 TCACGTTGTCTAGTGTTAGTGGATT 59.990 40.000 0.00 0.00 39.25 3.01
179 180 5.345202 CACGTTGTCTAGTGTTAGTGGATTC 59.655 44.000 0.00 0.00 33.97 2.52
180 181 5.010314 ACGTTGTCTAGTGTTAGTGGATTCA 59.990 40.000 0.00 0.00 0.00 2.57
181 182 5.924254 CGTTGTCTAGTGTTAGTGGATTCAA 59.076 40.000 0.00 0.00 0.00 2.69
182 183 6.089551 CGTTGTCTAGTGTTAGTGGATTCAAG 59.910 42.308 0.00 0.00 0.00 3.02
183 184 6.911250 TGTCTAGTGTTAGTGGATTCAAGA 57.089 37.500 0.00 0.00 0.00 3.02
184 185 7.297936 TGTCTAGTGTTAGTGGATTCAAGAA 57.702 36.000 0.00 0.00 0.00 2.52
185 186 7.732025 TGTCTAGTGTTAGTGGATTCAAGAAA 58.268 34.615 0.00 0.00 0.00 2.52
186 187 8.208224 TGTCTAGTGTTAGTGGATTCAAGAAAA 58.792 33.333 0.00 0.00 0.00 2.29
187 188 8.496751 GTCTAGTGTTAGTGGATTCAAGAAAAC 58.503 37.037 0.00 0.00 0.00 2.43
188 189 6.635030 AGTGTTAGTGGATTCAAGAAAACC 57.365 37.500 0.00 0.00 0.00 3.27
189 190 6.126409 AGTGTTAGTGGATTCAAGAAAACCA 58.874 36.000 7.62 7.62 0.00 3.67
190 191 6.039382 AGTGTTAGTGGATTCAAGAAAACCAC 59.961 38.462 22.80 22.80 44.35 4.16
191 192 5.008217 TGTTAGTGGATTCAAGAAAACCACG 59.992 40.000 23.38 0.00 46.30 4.94
192 193 2.884639 AGTGGATTCAAGAAAACCACGG 59.115 45.455 23.38 0.00 46.30 4.94
193 194 1.611491 TGGATTCAAGAAAACCACGGC 59.389 47.619 7.62 0.00 0.00 5.68
194 195 1.886542 GGATTCAAGAAAACCACGGCT 59.113 47.619 0.00 0.00 0.00 5.52
195 196 2.296190 GGATTCAAGAAAACCACGGCTT 59.704 45.455 0.00 0.00 0.00 4.35
196 197 3.565516 GATTCAAGAAAACCACGGCTTC 58.434 45.455 0.00 0.00 0.00 3.86
197 198 2.045561 TCAAGAAAACCACGGCTTCA 57.954 45.000 0.00 0.00 0.00 3.02
198 199 2.582052 TCAAGAAAACCACGGCTTCAT 58.418 42.857 0.00 0.00 0.00 2.57
199 200 2.552315 TCAAGAAAACCACGGCTTCATC 59.448 45.455 0.00 0.00 0.00 2.92
200 201 2.270352 AGAAAACCACGGCTTCATCA 57.730 45.000 0.00 0.00 0.00 3.07
201 202 2.795329 AGAAAACCACGGCTTCATCAT 58.205 42.857 0.00 0.00 0.00 2.45
202 203 3.157087 AGAAAACCACGGCTTCATCATT 58.843 40.909 0.00 0.00 0.00 2.57
203 204 4.331968 AGAAAACCACGGCTTCATCATTA 58.668 39.130 0.00 0.00 0.00 1.90
204 205 4.396166 AGAAAACCACGGCTTCATCATTAG 59.604 41.667 0.00 0.00 0.00 1.73
205 206 1.668419 ACCACGGCTTCATCATTAGC 58.332 50.000 0.00 0.00 36.66 3.09
209 210 3.706055 GGCTTCATCATTAGCCGGA 57.294 52.632 5.05 0.00 46.65 5.14
210 211 1.967319 GGCTTCATCATTAGCCGGAA 58.033 50.000 5.05 0.00 46.65 4.30
211 212 1.876156 GGCTTCATCATTAGCCGGAAG 59.124 52.381 5.05 0.00 46.65 3.46
212 213 2.565841 GCTTCATCATTAGCCGGAAGT 58.434 47.619 5.05 0.00 37.77 3.01
213 214 3.494398 GGCTTCATCATTAGCCGGAAGTA 60.494 47.826 5.05 0.00 46.65 2.24
214 215 4.127171 GCTTCATCATTAGCCGGAAGTAA 58.873 43.478 5.05 0.00 37.77 2.24
215 216 4.757149 GCTTCATCATTAGCCGGAAGTAAT 59.243 41.667 5.05 1.53 37.77 1.89
216 217 5.932303 GCTTCATCATTAGCCGGAAGTAATA 59.068 40.000 5.05 0.00 37.77 0.98
217 218 6.426937 GCTTCATCATTAGCCGGAAGTAATAA 59.573 38.462 5.05 0.00 37.77 1.40
218 219 7.571428 GCTTCATCATTAGCCGGAAGTAATAAC 60.571 40.741 5.05 0.00 37.77 1.89
219 220 6.228258 TCATCATTAGCCGGAAGTAATAACC 58.772 40.000 5.05 0.00 0.00 2.85
220 221 4.624015 TCATTAGCCGGAAGTAATAACCG 58.376 43.478 5.05 0.00 45.24 4.44
221 222 2.514205 TAGCCGGAAGTAATAACCGC 57.486 50.000 5.05 0.00 44.45 5.68
222 223 0.538118 AGCCGGAAGTAATAACCGCA 59.462 50.000 5.05 0.00 44.45 5.69
223 224 1.140252 AGCCGGAAGTAATAACCGCAT 59.860 47.619 5.05 0.00 44.45 4.73
224 225 2.366266 AGCCGGAAGTAATAACCGCATA 59.634 45.455 5.05 0.00 44.45 3.14
225 226 3.132925 GCCGGAAGTAATAACCGCATAA 58.867 45.455 5.05 0.00 44.45 1.90
226 227 3.749609 GCCGGAAGTAATAACCGCATAAT 59.250 43.478 5.05 0.00 44.45 1.28
227 228 4.378046 GCCGGAAGTAATAACCGCATAATG 60.378 45.833 5.05 0.00 44.45 1.90
228 229 4.378046 CCGGAAGTAATAACCGCATAATGC 60.378 45.833 0.00 0.00 44.45 3.56
229 230 4.451096 CGGAAGTAATAACCGCATAATGCT 59.549 41.667 0.00 0.00 42.25 3.79
230 231 5.636121 CGGAAGTAATAACCGCATAATGCTA 59.364 40.000 0.00 0.00 42.25 3.49
231 232 6.312918 CGGAAGTAATAACCGCATAATGCTAT 59.687 38.462 0.00 0.00 42.25 2.97
232 233 7.464358 GGAAGTAATAACCGCATAATGCTATG 58.536 38.462 0.00 0.00 42.25 2.23
233 234 7.333423 GGAAGTAATAACCGCATAATGCTATGA 59.667 37.037 0.41 0.00 42.25 2.15
234 235 8.615878 AAGTAATAACCGCATAATGCTATGAA 57.384 30.769 0.41 0.00 42.25 2.57
235 236 8.256611 AGTAATAACCGCATAATGCTATGAAG 57.743 34.615 0.41 0.00 42.25 3.02
249 250 5.573337 GCTATGAAGCTCTCCAAAATTGT 57.427 39.130 0.00 0.00 45.85 2.71
250 251 5.958955 GCTATGAAGCTCTCCAAAATTGTT 58.041 37.500 0.00 0.00 45.85 2.83
251 252 6.393171 GCTATGAAGCTCTCCAAAATTGTTT 58.607 36.000 0.00 0.00 45.85 2.83
252 253 6.870439 GCTATGAAGCTCTCCAAAATTGTTTT 59.130 34.615 0.00 0.00 45.85 2.43
253 254 7.148689 GCTATGAAGCTCTCCAAAATTGTTTTG 60.149 37.037 7.91 7.91 45.51 2.44
269 270 5.930837 TGTTTTGAAACAAAGTCCCAGAT 57.069 34.783 6.82 0.00 45.17 2.90
271 272 7.038154 TGTTTTGAAACAAAGTCCCAGATAG 57.962 36.000 6.82 0.00 45.17 2.08
272 273 6.040391 TGTTTTGAAACAAAGTCCCAGATAGG 59.960 38.462 6.82 0.00 45.17 2.57
273 274 5.576563 TTGAAACAAAGTCCCAGATAGGA 57.423 39.130 0.00 0.00 41.22 2.94
274 275 5.779241 TGAAACAAAGTCCCAGATAGGAT 57.221 39.130 0.00 0.00 41.22 3.24
275 276 6.884472 TGAAACAAAGTCCCAGATAGGATA 57.116 37.500 0.00 0.00 41.22 2.59
276 277 7.265599 TGAAACAAAGTCCCAGATAGGATAA 57.734 36.000 0.00 0.00 41.22 1.75
277 278 7.872138 TGAAACAAAGTCCCAGATAGGATAAT 58.128 34.615 0.00 0.00 41.22 1.28
278 279 8.336235 TGAAACAAAGTCCCAGATAGGATAATT 58.664 33.333 0.00 0.00 41.22 1.40
279 280 9.847224 GAAACAAAGTCCCAGATAGGATAATTA 57.153 33.333 0.00 0.00 41.22 1.40
280 281 9.853177 AAACAAAGTCCCAGATAGGATAATTAG 57.147 33.333 0.00 0.00 41.22 1.73
281 282 8.568617 ACAAAGTCCCAGATAGGATAATTAGT 57.431 34.615 0.00 0.00 41.22 2.24
282 283 9.004231 ACAAAGTCCCAGATAGGATAATTAGTT 57.996 33.333 0.00 0.00 41.22 2.24
283 284 9.853177 CAAAGTCCCAGATAGGATAATTAGTTT 57.147 33.333 0.00 0.00 41.22 2.66
307 308 7.642071 TTTTGATATGAAGTTCAGCAAAAGC 57.358 32.000 24.83 9.85 34.27 3.51
308 309 5.314923 TGATATGAAGTTCAGCAAAAGCC 57.685 39.130 11.91 0.00 0.00 4.35
309 310 5.012239 TGATATGAAGTTCAGCAAAAGCCT 58.988 37.500 11.91 0.00 0.00 4.58
310 311 5.477984 TGATATGAAGTTCAGCAAAAGCCTT 59.522 36.000 11.91 0.00 0.00 4.35
311 312 3.715628 TGAAGTTCAGCAAAAGCCTTC 57.284 42.857 0.08 0.00 0.00 3.46
312 313 2.362077 TGAAGTTCAGCAAAAGCCTTCC 59.638 45.455 0.08 0.00 0.00 3.46
313 314 0.954452 AGTTCAGCAAAAGCCTTCCG 59.046 50.000 0.00 0.00 0.00 4.30
314 315 0.951558 GTTCAGCAAAAGCCTTCCGA 59.048 50.000 0.00 0.00 0.00 4.55
315 316 1.336755 GTTCAGCAAAAGCCTTCCGAA 59.663 47.619 0.00 0.00 0.00 4.30
316 317 1.909700 TCAGCAAAAGCCTTCCGAAT 58.090 45.000 0.00 0.00 0.00 3.34
317 318 3.066291 TCAGCAAAAGCCTTCCGAATA 57.934 42.857 0.00 0.00 0.00 1.75
318 319 3.620488 TCAGCAAAAGCCTTCCGAATAT 58.380 40.909 0.00 0.00 0.00 1.28
319 320 3.627577 TCAGCAAAAGCCTTCCGAATATC 59.372 43.478 0.00 0.00 0.00 1.63
320 321 2.614057 AGCAAAAGCCTTCCGAATATCG 59.386 45.455 0.00 0.00 40.07 2.92
321 322 2.854805 GCAAAAGCCTTCCGAATATCGC 60.855 50.000 0.00 0.00 38.82 4.58
322 323 2.614057 CAAAAGCCTTCCGAATATCGCT 59.386 45.455 0.00 0.00 38.82 4.93
323 324 3.746045 AAAGCCTTCCGAATATCGCTA 57.254 42.857 0.00 0.00 38.82 4.26
324 325 3.963428 AAGCCTTCCGAATATCGCTAT 57.037 42.857 0.00 0.00 38.82 2.97
325 326 3.963428 AGCCTTCCGAATATCGCTATT 57.037 42.857 0.00 0.00 38.82 1.73
326 327 4.273148 AGCCTTCCGAATATCGCTATTT 57.727 40.909 0.00 0.00 38.82 1.40
327 328 4.246458 AGCCTTCCGAATATCGCTATTTC 58.754 43.478 0.00 0.00 38.82 2.17
328 329 3.060895 GCCTTCCGAATATCGCTATTTCG 59.939 47.826 0.00 0.00 38.82 3.46
329 330 4.482386 CCTTCCGAATATCGCTATTTCGA 58.518 43.478 13.26 0.00 43.09 3.71
330 331 4.921515 CCTTCCGAATATCGCTATTTCGAA 59.078 41.667 13.26 0.00 42.15 3.71
331 332 5.061064 CCTTCCGAATATCGCTATTTCGAAG 59.939 44.000 15.31 15.31 42.15 3.79
332 333 4.482386 TCCGAATATCGCTATTTCGAAGG 58.518 43.478 13.26 0.00 42.15 3.46
333 334 3.060895 CCGAATATCGCTATTTCGAAGGC 59.939 47.826 13.26 3.98 42.15 4.35
334 335 3.060895 CGAATATCGCTATTTCGAAGGCC 59.939 47.826 0.00 0.00 42.15 5.19
335 336 3.963428 ATATCGCTATTTCGAAGGCCT 57.037 42.857 0.00 0.00 42.15 5.19
336 337 2.622064 ATCGCTATTTCGAAGGCCTT 57.378 45.000 20.65 20.65 42.15 4.35
337 338 2.396590 TCGCTATTTCGAAGGCCTTT 57.603 45.000 21.54 5.54 35.31 3.11
338 339 2.006888 TCGCTATTTCGAAGGCCTTTG 58.993 47.619 24.98 24.98 35.31 2.77
339 340 1.531883 CGCTATTTCGAAGGCCTTTGC 60.532 52.381 25.94 16.12 0.00 3.68
340 341 1.745653 GCTATTTCGAAGGCCTTTGCT 59.254 47.619 25.94 15.53 37.74 3.91
341 342 2.478539 GCTATTTCGAAGGCCTTTGCTG 60.479 50.000 25.94 13.61 37.74 4.41
342 343 1.909700 ATTTCGAAGGCCTTTGCTGA 58.090 45.000 25.94 15.57 37.74 4.26
343 344 1.686355 TTTCGAAGGCCTTTGCTGAA 58.314 45.000 25.94 19.86 37.74 3.02
344 345 1.686355 TTCGAAGGCCTTTGCTGAAA 58.314 45.000 25.94 13.32 37.74 2.69
345 346 1.909700 TCGAAGGCCTTTGCTGAAAT 58.090 45.000 25.94 0.00 37.74 2.17
346 347 2.238521 TCGAAGGCCTTTGCTGAAATT 58.761 42.857 25.94 0.00 37.74 1.82
347 348 2.228822 TCGAAGGCCTTTGCTGAAATTC 59.771 45.455 25.94 5.79 37.74 2.17
348 349 2.599659 GAAGGCCTTTGCTGAAATTCG 58.400 47.619 21.54 0.00 37.74 3.34
349 350 1.620822 AGGCCTTTGCTGAAATTCGT 58.379 45.000 0.00 0.00 37.74 3.85
350 351 2.790433 AGGCCTTTGCTGAAATTCGTA 58.210 42.857 0.00 0.00 37.74 3.43
351 352 3.153919 AGGCCTTTGCTGAAATTCGTAA 58.846 40.909 0.00 0.00 37.74 3.18
352 353 3.572255 AGGCCTTTGCTGAAATTCGTAAA 59.428 39.130 0.00 0.00 37.74 2.01
353 354 4.038642 AGGCCTTTGCTGAAATTCGTAAAA 59.961 37.500 0.00 0.00 37.74 1.52
354 355 4.747605 GGCCTTTGCTGAAATTCGTAAAAA 59.252 37.500 0.00 0.00 37.74 1.94
381 382 9.750125 AAAGCAAATTATTCTATCCGGAATTTC 57.250 29.630 9.01 3.05 37.20 2.17
382 383 8.463930 AGCAAATTATTCTATCCGGAATTTCA 57.536 30.769 9.01 0.00 37.20 2.69
383 384 9.082313 AGCAAATTATTCTATCCGGAATTTCAT 57.918 29.630 9.01 0.00 37.20 2.57
384 385 9.696917 GCAAATTATTCTATCCGGAATTTCATT 57.303 29.630 9.01 0.00 37.20 2.57
388 389 8.896320 TTATTCTATCCGGAATTTCATTTCGA 57.104 30.769 9.01 0.00 43.90 3.71
389 390 7.801716 ATTCTATCCGGAATTTCATTTCGAA 57.198 32.000 9.01 0.00 43.90 3.71
390 391 7.618502 TTCTATCCGGAATTTCATTTCGAAA 57.381 32.000 13.91 13.91 43.90 3.46
391 392 7.011828 TCTATCCGGAATTTCATTTCGAAAC 57.988 36.000 13.81 0.00 46.22 2.78
392 393 5.637006 ATCCGGAATTTCATTTCGAAACA 57.363 34.783 13.81 0.00 46.22 2.83
393 394 5.440234 TCCGGAATTTCATTTCGAAACAA 57.560 34.783 13.81 6.37 46.22 2.83
394 395 6.019779 TCCGGAATTTCATTTCGAAACAAT 57.980 33.333 13.81 9.10 46.22 2.71
395 396 6.451393 TCCGGAATTTCATTTCGAAACAATT 58.549 32.000 13.81 16.46 46.22 2.32
396 397 6.926272 TCCGGAATTTCATTTCGAAACAATTT 59.074 30.769 13.81 11.09 46.22 1.82
397 398 7.439655 TCCGGAATTTCATTTCGAAACAATTTT 59.560 29.630 13.81 4.92 46.22 1.82
398 399 7.530190 CCGGAATTTCATTTCGAAACAATTTTG 59.470 33.333 13.81 6.66 46.22 2.44
399 400 8.272176 CGGAATTTCATTTCGAAACAATTTTGA 58.728 29.630 13.81 9.07 46.22 2.69
400 401 9.928236 GGAATTTCATTTCGAAACAATTTTGAA 57.072 25.926 13.81 14.55 46.22 2.69
404 405 7.393551 TCATTTCGAAACAATTTTGAAGAGC 57.606 32.000 13.81 0.00 42.35 4.09
405 406 7.202526 TCATTTCGAAACAATTTTGAAGAGCT 58.797 30.769 13.81 0.00 42.35 4.09
406 407 7.706179 TCATTTCGAAACAATTTTGAAGAGCTT 59.294 29.630 13.81 0.00 42.35 3.74
407 408 7.449934 TTTCGAAACAATTTTGAAGAGCTTC 57.550 32.000 6.47 3.32 42.35 3.86
408 409 5.204833 TCGAAACAATTTTGAAGAGCTTCG 58.795 37.500 5.82 0.00 42.28 3.79
409 410 4.970003 CGAAACAATTTTGAAGAGCTTCGT 59.030 37.500 5.82 0.00 42.28 3.85
410 411 5.108630 CGAAACAATTTTGAAGAGCTTCGTG 60.109 40.000 5.82 2.26 42.28 4.35
411 412 4.228912 ACAATTTTGAAGAGCTTCGTGG 57.771 40.909 5.82 0.00 42.28 4.94
412 413 2.982470 CAATTTTGAAGAGCTTCGTGGC 59.018 45.455 5.82 0.00 42.28 5.01
413 414 1.674359 TTTTGAAGAGCTTCGTGGCA 58.326 45.000 5.82 0.00 42.28 4.92
414 415 1.896220 TTTGAAGAGCTTCGTGGCAT 58.104 45.000 5.82 0.00 42.28 4.40
415 416 1.442769 TTGAAGAGCTTCGTGGCATC 58.557 50.000 5.82 0.00 42.28 3.91
416 417 0.321346 TGAAGAGCTTCGTGGCATCA 59.679 50.000 5.82 4.18 42.28 3.07
417 418 1.065926 TGAAGAGCTTCGTGGCATCAT 60.066 47.619 5.82 0.00 42.28 2.45
418 419 2.168313 TGAAGAGCTTCGTGGCATCATA 59.832 45.455 5.82 0.00 42.28 2.15
419 420 2.231215 AGAGCTTCGTGGCATCATAC 57.769 50.000 0.00 0.00 34.17 2.39
420 421 0.855349 GAGCTTCGTGGCATCATACG 59.145 55.000 0.00 0.00 41.38 3.06
421 422 1.154205 AGCTTCGTGGCATCATACGC 61.154 55.000 0.00 0.00 39.94 4.42
429 430 2.240493 GGCATCATACGCCTGTTACT 57.760 50.000 0.00 0.00 46.56 2.24
430 431 2.561569 GGCATCATACGCCTGTTACTT 58.438 47.619 0.00 0.00 46.56 2.24
431 432 2.544267 GGCATCATACGCCTGTTACTTC 59.456 50.000 0.00 0.00 46.56 3.01
432 433 2.544267 GCATCATACGCCTGTTACTTCC 59.456 50.000 0.00 0.00 0.00 3.46
433 434 2.572191 TCATACGCCTGTTACTTCCG 57.428 50.000 0.00 0.00 0.00 4.30
434 435 1.135527 TCATACGCCTGTTACTTCCGG 59.864 52.381 0.00 0.00 0.00 5.14
435 436 0.179092 ATACGCCTGTTACTTCCGGC 60.179 55.000 0.00 0.00 39.14 6.13
436 437 1.252904 TACGCCTGTTACTTCCGGCT 61.253 55.000 0.00 0.00 40.34 5.52
437 438 1.252904 ACGCCTGTTACTTCCGGCTA 61.253 55.000 0.00 0.00 40.34 3.93
438 439 0.108520 CGCCTGTTACTTCCGGCTAA 60.109 55.000 0.00 0.00 40.34 3.09
439 440 1.472728 CGCCTGTTACTTCCGGCTAAT 60.473 52.381 0.00 0.00 40.34 1.73
440 441 1.940613 GCCTGTTACTTCCGGCTAATG 59.059 52.381 0.00 0.00 39.42 1.90
441 442 2.419574 GCCTGTTACTTCCGGCTAATGA 60.420 50.000 0.00 0.00 39.42 2.57
442 443 3.744530 GCCTGTTACTTCCGGCTAATGAT 60.745 47.826 0.00 0.00 39.42 2.45
443 444 3.809832 CCTGTTACTTCCGGCTAATGATG 59.190 47.826 0.00 0.00 0.00 3.07
444 445 4.442893 CCTGTTACTTCCGGCTAATGATGA 60.443 45.833 0.00 0.00 0.00 2.92
445 446 5.092554 TGTTACTTCCGGCTAATGATGAA 57.907 39.130 0.00 0.00 0.00 2.57
446 447 5.116180 TGTTACTTCCGGCTAATGATGAAG 58.884 41.667 0.00 0.00 38.65 3.02
447 448 2.565841 ACTTCCGGCTAATGATGAAGC 58.434 47.619 0.00 0.00 36.71 3.86
448 449 2.092968 ACTTCCGGCTAATGATGAAGCA 60.093 45.455 0.00 0.00 40.61 3.91
449 450 2.708216 TCCGGCTAATGATGAAGCAA 57.292 45.000 0.00 0.00 40.61 3.91
450 451 3.213206 TCCGGCTAATGATGAAGCAAT 57.787 42.857 0.00 0.00 40.61 3.56
451 452 2.880268 TCCGGCTAATGATGAAGCAATG 59.120 45.455 0.00 0.00 40.61 2.82
452 453 2.030540 CCGGCTAATGATGAAGCAATGG 60.031 50.000 0.00 0.00 40.61 3.16
453 454 2.880268 CGGCTAATGATGAAGCAATGGA 59.120 45.455 2.96 0.00 40.61 3.41
454 455 3.504906 CGGCTAATGATGAAGCAATGGAT 59.495 43.478 2.96 0.00 40.61 3.41
455 456 4.022589 CGGCTAATGATGAAGCAATGGATT 60.023 41.667 2.96 0.00 40.61 3.01
456 457 5.508489 CGGCTAATGATGAAGCAATGGATTT 60.508 40.000 2.96 0.00 40.61 2.17
457 458 6.285990 GGCTAATGATGAAGCAATGGATTTT 58.714 36.000 2.96 0.00 40.61 1.82
458 459 6.764560 GGCTAATGATGAAGCAATGGATTTTT 59.235 34.615 2.96 0.00 40.61 1.94
480 481 7.962934 TTTTTCAATACTTTGACAGACAACG 57.037 32.000 0.00 0.00 41.50 4.10
481 482 6.671614 TTTCAATACTTTGACAGACAACGT 57.328 33.333 0.81 0.81 41.50 3.99
482 483 5.651172 TCAATACTTTGACAGACAACGTG 57.349 39.130 5.25 0.00 40.34 4.49
483 484 5.353111 TCAATACTTTGACAGACAACGTGA 58.647 37.500 5.25 0.00 40.34 4.35
484 485 5.233476 TCAATACTTTGACAGACAACGTGAC 59.767 40.000 5.25 0.00 40.34 3.67
485 486 2.967362 ACTTTGACAGACAACGTGACA 58.033 42.857 0.00 0.00 39.05 3.58
486 487 3.531538 ACTTTGACAGACAACGTGACAT 58.468 40.909 0.00 0.00 39.05 3.06
487 488 4.689071 ACTTTGACAGACAACGTGACATA 58.311 39.130 0.00 0.00 39.05 2.29
488 489 5.297547 ACTTTGACAGACAACGTGACATAT 58.702 37.500 0.00 0.00 39.05 1.78
536 538 2.509166 ATATAGGAGCGATCGGACCA 57.491 50.000 18.30 0.00 0.00 4.02
541 543 0.598680 GGAGCGATCGGACCAGAATG 60.599 60.000 18.30 0.00 0.00 2.67
552 554 3.120199 CGGACCAGAATGTGCAAAACTAG 60.120 47.826 0.00 0.00 0.00 2.57
577 579 1.078347 GCAAACCCCATCCTTCCCA 59.922 57.895 0.00 0.00 0.00 4.37
586 588 1.000866 ATCCTTCCCAGCCCAAAGC 59.999 57.895 0.00 0.00 44.25 3.51
631 633 4.447342 CCACCCCACTGCCCCATC 62.447 72.222 0.00 0.00 0.00 3.51
633 635 2.535317 ACCCCACTGCCCCATCTT 60.535 61.111 0.00 0.00 0.00 2.40
634 636 2.276740 CCCCACTGCCCCATCTTC 59.723 66.667 0.00 0.00 0.00 2.87
645 647 0.475906 CCCATCTTCATCCAGACCCC 59.524 60.000 0.00 0.00 0.00 4.95
650 652 0.394565 CTTCATCCAGACCCCGATCC 59.605 60.000 0.00 0.00 0.00 3.36
1030 1565 1.761667 CTGCTCCTCCTCCTCCTGG 60.762 68.421 0.00 0.00 0.00 4.45
1190 1746 9.657419 ACAAGTTCAAAATCTGAAGAAACAAAT 57.343 25.926 0.00 0.00 44.83 2.32
1504 2098 0.882042 AGTTCAGACTTGCCTGCACG 60.882 55.000 0.00 0.00 35.86 5.34
1600 2194 2.113860 TGCTCCACTGCTAAATCCAC 57.886 50.000 0.00 0.00 0.00 4.02
1677 2271 0.252696 TAGGCCCACCAGACTCACAT 60.253 55.000 0.00 0.00 39.06 3.21
1742 2337 2.347114 CCACTCATGGCCGTCACA 59.653 61.111 0.00 0.00 39.82 3.58
1864 2461 2.633488 GGTCCTCAGTTCTAACATGGC 58.367 52.381 0.00 0.00 0.00 4.40
1922 2571 4.099266 AGAGCTAAGCGATCTTCAGTTCAT 59.901 41.667 0.00 0.00 33.89 2.57
1962 2611 2.158957 TCCAGCCGGCTTACTATTTCAG 60.159 50.000 30.60 11.52 0.00 3.02
1994 2643 3.060602 ACTAAAAAGCTCTGCGTCTGAC 58.939 45.455 0.00 0.00 0.00 3.51
2061 2710 5.357742 AACAAAATCTCCAGCCAACTTTT 57.642 34.783 0.00 0.00 0.00 2.27
2225 2989 4.999751 ATCTGAAGAAACGAAGCTCAAC 57.000 40.909 0.00 0.00 0.00 3.18
2280 3047 9.995957 ATTAGTTGTTTTTGGTTAATTTGTTGC 57.004 25.926 0.00 0.00 0.00 4.17
2405 3174 7.562088 AGAAGAACCCAAAACATTTGGTAGTTA 59.438 33.333 17.91 0.00 37.88 2.24
2560 3334 6.621316 TTAACCGATTCAGTGCAAGTTTTA 57.379 33.333 0.00 0.00 0.00 1.52
2899 3682 9.971922 GTACTGGAACTAGAGTACAAGTTTTAA 57.028 33.333 12.36 0.59 42.75 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 4.834892 ATTGATGGCGCGCGTTGC 62.835 61.111 32.35 14.96 41.47 4.17
12 13 2.651367 ATCATTGATGGCGCGCGTTG 62.651 55.000 32.35 15.09 0.00 4.10
13 14 2.378945 GATCATTGATGGCGCGCGTT 62.379 55.000 32.35 15.25 0.00 4.84
14 15 2.885676 GATCATTGATGGCGCGCGT 61.886 57.895 32.35 16.88 0.00 6.01
15 16 1.284297 TAGATCATTGATGGCGCGCG 61.284 55.000 28.44 28.44 0.00 6.86
16 17 0.441533 CTAGATCATTGATGGCGCGC 59.558 55.000 25.94 25.94 0.00 6.86
17 18 1.788258 ACTAGATCATTGATGGCGCG 58.212 50.000 0.00 0.00 0.00 6.86
18 19 3.063180 GCATACTAGATCATTGATGGCGC 59.937 47.826 3.32 0.00 0.00 6.53
19 20 4.248058 TGCATACTAGATCATTGATGGCG 58.752 43.478 3.32 0.00 0.00 5.69
20 21 6.564709 TTTGCATACTAGATCATTGATGGC 57.435 37.500 3.32 0.00 0.00 4.40
21 22 8.107399 ACATTTGCATACTAGATCATTGATGG 57.893 34.615 3.32 0.00 0.00 3.51
24 25 9.612066 TGTTACATTTGCATACTAGATCATTGA 57.388 29.630 0.00 0.00 0.00 2.57
65 66 7.609918 GCCATTTTGTTAAATCCCTTAATGGTT 59.390 33.333 0.00 0.00 41.62 3.67
66 67 7.109501 GCCATTTTGTTAAATCCCTTAATGGT 58.890 34.615 0.00 0.00 41.62 3.55
67 68 6.257630 CGCCATTTTGTTAAATCCCTTAATGG 59.742 38.462 0.00 0.00 42.17 3.16
68 69 6.238076 GCGCCATTTTGTTAAATCCCTTAATG 60.238 38.462 0.00 0.00 31.63 1.90
69 70 5.815222 GCGCCATTTTGTTAAATCCCTTAAT 59.185 36.000 0.00 0.00 31.63 1.40
70 71 5.172205 GCGCCATTTTGTTAAATCCCTTAA 58.828 37.500 0.00 0.00 31.63 1.85
71 72 4.382147 GGCGCCATTTTGTTAAATCCCTTA 60.382 41.667 24.80 0.00 31.63 2.69
72 73 3.595173 GCGCCATTTTGTTAAATCCCTT 58.405 40.909 0.00 0.00 31.63 3.95
73 74 2.093711 GGCGCCATTTTGTTAAATCCCT 60.094 45.455 24.80 0.00 31.63 4.20
74 75 2.276201 GGCGCCATTTTGTTAAATCCC 58.724 47.619 24.80 0.00 31.63 3.85
75 76 2.966050 TGGCGCCATTTTGTTAAATCC 58.034 42.857 29.03 0.00 31.63 3.01
76 77 4.869861 AGAATGGCGCCATTTTGTTAAATC 59.130 37.500 45.38 32.14 45.50 2.17
77 78 4.630940 CAGAATGGCGCCATTTTGTTAAAT 59.369 37.500 42.71 27.80 45.50 1.40
78 79 3.993081 CAGAATGGCGCCATTTTGTTAAA 59.007 39.130 42.71 19.14 45.50 1.52
79 80 3.583806 CAGAATGGCGCCATTTTGTTAA 58.416 40.909 42.71 19.83 45.50 2.01
80 81 3.229276 CAGAATGGCGCCATTTTGTTA 57.771 42.857 42.71 20.51 45.50 2.41
81 82 2.083167 CAGAATGGCGCCATTTTGTT 57.917 45.000 42.71 30.82 45.50 2.83
82 83 3.818586 CAGAATGGCGCCATTTTGT 57.181 47.368 42.71 32.48 45.50 2.83
94 95 7.337689 TGAACCATTTTCTACTCATCCAGAATG 59.662 37.037 0.00 0.00 36.65 2.67
95 96 7.405292 TGAACCATTTTCTACTCATCCAGAAT 58.595 34.615 0.00 0.00 31.15 2.40
96 97 6.778821 TGAACCATTTTCTACTCATCCAGAA 58.221 36.000 0.00 0.00 0.00 3.02
97 98 6.373005 TGAACCATTTTCTACTCATCCAGA 57.627 37.500 0.00 0.00 0.00 3.86
98 99 8.915057 ATATGAACCATTTTCTACTCATCCAG 57.085 34.615 0.00 0.00 0.00 3.86
99 100 9.699410 AAATATGAACCATTTTCTACTCATCCA 57.301 29.630 0.00 0.00 0.00 3.41
111 112 9.258629 TGAGATCAGGAAAAATATGAACCATTT 57.741 29.630 0.00 0.00 0.00 2.32
112 113 8.827832 TGAGATCAGGAAAAATATGAACCATT 57.172 30.769 0.00 0.00 0.00 3.16
113 114 9.075678 GATGAGATCAGGAAAAATATGAACCAT 57.924 33.333 0.00 0.00 0.00 3.55
114 115 8.277197 AGATGAGATCAGGAAAAATATGAACCA 58.723 33.333 0.00 0.00 0.00 3.67
115 116 8.688747 AGATGAGATCAGGAAAAATATGAACC 57.311 34.615 0.00 0.00 0.00 3.62
117 118 9.784531 GGTAGATGAGATCAGGAAAAATATGAA 57.215 33.333 0.00 0.00 0.00 2.57
118 119 8.378565 GGGTAGATGAGATCAGGAAAAATATGA 58.621 37.037 0.00 0.00 0.00 2.15
119 120 8.381636 AGGGTAGATGAGATCAGGAAAAATATG 58.618 37.037 0.00 0.00 0.00 1.78
120 121 8.517323 AGGGTAGATGAGATCAGGAAAAATAT 57.483 34.615 0.00 0.00 0.00 1.28
121 122 7.937700 AGGGTAGATGAGATCAGGAAAAATA 57.062 36.000 0.00 0.00 0.00 1.40
122 123 6.838401 AGGGTAGATGAGATCAGGAAAAAT 57.162 37.500 0.00 0.00 0.00 1.82
123 124 6.445139 AGAAGGGTAGATGAGATCAGGAAAAA 59.555 38.462 0.00 0.00 0.00 1.94
124 125 5.966935 AGAAGGGTAGATGAGATCAGGAAAA 59.033 40.000 0.00 0.00 0.00 2.29
125 126 5.533112 AGAAGGGTAGATGAGATCAGGAAA 58.467 41.667 0.00 0.00 0.00 3.13
126 127 5.149584 AGAAGGGTAGATGAGATCAGGAA 57.850 43.478 0.00 0.00 0.00 3.36
127 128 4.823364 AGAAGGGTAGATGAGATCAGGA 57.177 45.455 0.00 0.00 0.00 3.86
128 129 7.838696 ACATATAGAAGGGTAGATGAGATCAGG 59.161 40.741 0.00 0.00 0.00 3.86
129 130 8.821686 ACATATAGAAGGGTAGATGAGATCAG 57.178 38.462 0.00 0.00 0.00 2.90
130 131 8.394040 TGACATATAGAAGGGTAGATGAGATCA 58.606 37.037 0.00 0.00 0.00 2.92
131 132 8.682710 GTGACATATAGAAGGGTAGATGAGATC 58.317 40.741 0.00 0.00 0.00 2.75
132 133 7.338196 CGTGACATATAGAAGGGTAGATGAGAT 59.662 40.741 0.00 0.00 0.00 2.75
133 134 6.655425 CGTGACATATAGAAGGGTAGATGAGA 59.345 42.308 0.00 0.00 0.00 3.27
134 135 6.431543 ACGTGACATATAGAAGGGTAGATGAG 59.568 42.308 0.00 0.00 0.00 2.90
135 136 6.304624 ACGTGACATATAGAAGGGTAGATGA 58.695 40.000 0.00 0.00 0.00 2.92
136 137 6.576662 ACGTGACATATAGAAGGGTAGATG 57.423 41.667 0.00 0.00 0.00 2.90
137 138 6.550108 ACAACGTGACATATAGAAGGGTAGAT 59.450 38.462 0.00 0.00 0.00 1.98
138 139 5.889853 ACAACGTGACATATAGAAGGGTAGA 59.110 40.000 0.00 0.00 0.00 2.59
139 140 6.039493 AGACAACGTGACATATAGAAGGGTAG 59.961 42.308 0.00 0.00 0.00 3.18
140 141 5.889853 AGACAACGTGACATATAGAAGGGTA 59.110 40.000 0.00 0.00 0.00 3.69
141 142 4.710375 AGACAACGTGACATATAGAAGGGT 59.290 41.667 0.00 0.00 0.00 4.34
142 143 5.263968 AGACAACGTGACATATAGAAGGG 57.736 43.478 0.00 0.00 0.00 3.95
143 144 6.913132 CACTAGACAACGTGACATATAGAAGG 59.087 42.308 0.00 0.00 33.04 3.46
144 145 7.473366 ACACTAGACAACGTGACATATAGAAG 58.527 38.462 0.00 0.00 35.23 2.85
145 146 7.387119 ACACTAGACAACGTGACATATAGAA 57.613 36.000 0.00 0.00 35.23 2.10
146 147 6.997239 ACACTAGACAACGTGACATATAGA 57.003 37.500 0.00 0.00 35.23 1.98
147 148 8.396390 ACTAACACTAGACAACGTGACATATAG 58.604 37.037 0.00 0.00 35.23 1.31
148 149 8.179615 CACTAACACTAGACAACGTGACATATA 58.820 37.037 0.00 0.00 35.23 0.86
149 150 7.027760 CACTAACACTAGACAACGTGACATAT 58.972 38.462 0.00 0.00 35.23 1.78
150 151 6.376177 CACTAACACTAGACAACGTGACATA 58.624 40.000 0.00 0.00 35.23 2.29
151 152 5.220381 CACTAACACTAGACAACGTGACAT 58.780 41.667 0.00 0.00 35.23 3.06
152 153 4.498513 CCACTAACACTAGACAACGTGACA 60.499 45.833 0.00 0.00 35.23 3.58
153 154 3.979495 CCACTAACACTAGACAACGTGAC 59.021 47.826 0.00 0.00 35.23 3.67
154 155 3.884693 TCCACTAACACTAGACAACGTGA 59.115 43.478 0.00 0.00 35.23 4.35
155 156 4.233123 TCCACTAACACTAGACAACGTG 57.767 45.455 0.00 0.00 37.18 4.49
156 157 5.010314 TGAATCCACTAACACTAGACAACGT 59.990 40.000 0.00 0.00 0.00 3.99
157 158 5.466819 TGAATCCACTAACACTAGACAACG 58.533 41.667 0.00 0.00 0.00 4.10
158 159 7.152645 TCTTGAATCCACTAACACTAGACAAC 58.847 38.462 0.00 0.00 0.00 3.32
159 160 7.297936 TCTTGAATCCACTAACACTAGACAA 57.702 36.000 0.00 0.00 0.00 3.18
160 161 6.911250 TCTTGAATCCACTAACACTAGACA 57.089 37.500 0.00 0.00 0.00 3.41
161 162 8.496751 GTTTTCTTGAATCCACTAACACTAGAC 58.503 37.037 0.00 0.00 0.00 2.59
162 163 7.660208 GGTTTTCTTGAATCCACTAACACTAGA 59.340 37.037 0.00 0.00 0.00 2.43
163 164 7.444183 TGGTTTTCTTGAATCCACTAACACTAG 59.556 37.037 0.00 0.00 33.23 2.57
164 165 7.284074 TGGTTTTCTTGAATCCACTAACACTA 58.716 34.615 0.00 0.00 33.23 2.74
165 166 6.126409 TGGTTTTCTTGAATCCACTAACACT 58.874 36.000 0.00 0.00 33.23 3.55
166 167 6.385649 TGGTTTTCTTGAATCCACTAACAC 57.614 37.500 0.00 0.00 33.23 3.32
173 174 1.611491 GCCGTGGTTTTCTTGAATCCA 59.389 47.619 4.55 4.55 35.28 3.41
174 175 1.886542 AGCCGTGGTTTTCTTGAATCC 59.113 47.619 0.00 0.00 0.00 3.01
175 176 3.004315 TGAAGCCGTGGTTTTCTTGAATC 59.996 43.478 6.77 0.00 0.00 2.52
176 177 2.955660 TGAAGCCGTGGTTTTCTTGAAT 59.044 40.909 6.77 0.00 0.00 2.57
177 178 2.370349 TGAAGCCGTGGTTTTCTTGAA 58.630 42.857 6.77 0.00 0.00 2.69
178 179 2.045561 TGAAGCCGTGGTTTTCTTGA 57.954 45.000 6.77 0.00 0.00 3.02
179 180 2.293122 TGATGAAGCCGTGGTTTTCTTG 59.707 45.455 6.77 0.00 0.00 3.02
180 181 2.582052 TGATGAAGCCGTGGTTTTCTT 58.418 42.857 6.77 1.95 0.00 2.52
181 182 2.270352 TGATGAAGCCGTGGTTTTCT 57.730 45.000 6.77 0.00 0.00 2.52
182 183 3.575965 AATGATGAAGCCGTGGTTTTC 57.424 42.857 0.00 0.00 0.00 2.29
183 184 3.119495 GCTAATGATGAAGCCGTGGTTTT 60.119 43.478 0.00 0.00 32.40 2.43
184 185 2.423538 GCTAATGATGAAGCCGTGGTTT 59.576 45.455 0.00 0.00 32.40 3.27
185 186 2.017049 GCTAATGATGAAGCCGTGGTT 58.983 47.619 0.00 0.00 32.40 3.67
186 187 1.668419 GCTAATGATGAAGCCGTGGT 58.332 50.000 0.00 0.00 32.40 4.16
192 193 2.565841 ACTTCCGGCTAATGATGAAGC 58.434 47.619 0.00 0.00 36.71 3.86
193 194 7.095187 GGTTATTACTTCCGGCTAATGATGAAG 60.095 40.741 0.00 0.00 38.65 3.02
194 195 6.708949 GGTTATTACTTCCGGCTAATGATGAA 59.291 38.462 0.00 0.00 0.00 2.57
195 196 6.228258 GGTTATTACTTCCGGCTAATGATGA 58.772 40.000 0.00 0.00 0.00 2.92
196 197 5.120208 CGGTTATTACTTCCGGCTAATGATG 59.880 44.000 0.00 0.00 40.49 3.07
197 198 5.235516 CGGTTATTACTTCCGGCTAATGAT 58.764 41.667 0.00 0.00 40.49 2.45
198 199 4.624015 CGGTTATTACTTCCGGCTAATGA 58.376 43.478 0.00 0.00 40.49 2.57
199 200 3.185797 GCGGTTATTACTTCCGGCTAATG 59.814 47.826 0.00 0.00 43.77 1.90
200 201 3.181463 TGCGGTTATTACTTCCGGCTAAT 60.181 43.478 0.00 0.22 43.77 1.73
201 202 2.168106 TGCGGTTATTACTTCCGGCTAA 59.832 45.455 0.00 0.00 43.77 3.09
202 203 1.755959 TGCGGTTATTACTTCCGGCTA 59.244 47.619 0.00 0.00 43.77 3.93
203 204 0.538118 TGCGGTTATTACTTCCGGCT 59.462 50.000 0.00 0.00 43.77 5.52
204 205 1.589803 ATGCGGTTATTACTTCCGGC 58.410 50.000 0.00 0.00 43.77 6.13
205 206 4.378046 GCATTATGCGGTTATTACTTCCGG 60.378 45.833 0.00 0.00 43.77 5.14
206 207 4.708601 GCATTATGCGGTTATTACTTCCG 58.291 43.478 0.00 0.00 45.94 4.30
227 228 7.148689 CAAAACAATTTTGGAGAGCTTCATAGC 60.149 37.037 6.20 0.00 45.02 2.97
228 229 8.236084 CAAAACAATTTTGGAGAGCTTCATAG 57.764 34.615 6.20 0.00 44.75 2.23
247 248 5.930837 ATCTGGGACTTTGTTTCAAAACA 57.069 34.783 4.24 4.24 46.35 2.83
248 249 6.264518 TCCTATCTGGGACTTTGTTTCAAAAC 59.735 38.462 0.00 0.00 36.58 2.43
249 250 6.369629 TCCTATCTGGGACTTTGTTTCAAAA 58.630 36.000 0.00 0.00 36.20 2.44
250 251 5.947663 TCCTATCTGGGACTTTGTTTCAAA 58.052 37.500 0.00 0.00 36.20 2.69
251 252 5.576563 TCCTATCTGGGACTTTGTTTCAA 57.423 39.130 0.00 0.00 36.20 2.69
252 253 5.779241 ATCCTATCTGGGACTTTGTTTCA 57.221 39.130 0.00 0.00 38.30 2.69
253 254 8.753497 AATTATCCTATCTGGGACTTTGTTTC 57.247 34.615 0.00 0.00 38.30 2.78
254 255 9.853177 CTAATTATCCTATCTGGGACTTTGTTT 57.147 33.333 0.00 0.00 38.30 2.83
255 256 9.004231 ACTAATTATCCTATCTGGGACTTTGTT 57.996 33.333 0.00 0.00 38.30 2.83
256 257 8.568617 ACTAATTATCCTATCTGGGACTTTGT 57.431 34.615 0.00 0.00 38.30 2.83
257 258 9.853177 AAACTAATTATCCTATCTGGGACTTTG 57.147 33.333 0.00 0.00 38.30 2.77
282 283 7.171337 GGCTTTTGCTGAACTTCATATCAAAAA 59.829 33.333 17.78 9.92 46.54 1.94
283 284 6.646240 GGCTTTTGCTGAACTTCATATCAAAA 59.354 34.615 16.99 16.99 46.54 2.44
284 285 6.015180 AGGCTTTTGCTGAACTTCATATCAAA 60.015 34.615 8.64 8.64 46.54 2.69
285 286 5.477984 AGGCTTTTGCTGAACTTCATATCAA 59.522 36.000 0.00 0.00 46.54 2.57
286 287 5.012239 AGGCTTTTGCTGAACTTCATATCA 58.988 37.500 0.00 0.00 46.54 2.15
287 288 5.573337 AGGCTTTTGCTGAACTTCATATC 57.427 39.130 0.00 0.00 46.54 1.63
288 289 5.105595 GGAAGGCTTTTGCTGAACTTCATAT 60.106 40.000 0.00 0.00 46.54 1.78
289 290 4.218417 GGAAGGCTTTTGCTGAACTTCATA 59.782 41.667 0.00 0.00 46.54 2.15
290 291 3.006217 GGAAGGCTTTTGCTGAACTTCAT 59.994 43.478 0.00 0.00 46.54 2.57
291 292 2.362077 GGAAGGCTTTTGCTGAACTTCA 59.638 45.455 0.00 0.00 46.54 3.02
292 293 2.605580 CGGAAGGCTTTTGCTGAACTTC 60.606 50.000 0.00 0.00 46.54 3.01
293 294 1.338020 CGGAAGGCTTTTGCTGAACTT 59.662 47.619 0.00 0.00 46.54 2.66
294 295 0.954452 CGGAAGGCTTTTGCTGAACT 59.046 50.000 0.00 0.00 46.54 3.01
295 296 0.951558 TCGGAAGGCTTTTGCTGAAC 59.048 50.000 0.00 0.00 46.54 3.18
296 297 1.686355 TTCGGAAGGCTTTTGCTGAA 58.314 45.000 0.00 2.78 46.54 3.02
297 298 1.909700 ATTCGGAAGGCTTTTGCTGA 58.090 45.000 0.00 0.00 46.54 4.26
298 299 3.546815 CGATATTCGGAAGGCTTTTGCTG 60.547 47.826 0.00 0.00 39.97 4.41
299 300 2.614057 CGATATTCGGAAGGCTTTTGCT 59.386 45.455 0.00 0.00 39.97 3.91
300 301 2.854805 GCGATATTCGGAAGGCTTTTGC 60.855 50.000 0.00 0.00 40.84 3.68
301 302 2.614057 AGCGATATTCGGAAGGCTTTTG 59.386 45.455 0.00 0.00 40.84 2.44
302 303 2.919228 AGCGATATTCGGAAGGCTTTT 58.081 42.857 0.00 0.00 40.84 2.27
303 304 2.622064 AGCGATATTCGGAAGGCTTT 57.378 45.000 0.00 0.00 40.84 3.51
304 305 3.963428 ATAGCGATATTCGGAAGGCTT 57.037 42.857 0.00 0.00 40.84 4.35
305 306 3.963428 AATAGCGATATTCGGAAGGCT 57.037 42.857 0.00 11.36 40.84 4.58
306 307 3.060895 CGAAATAGCGATATTCGGAAGGC 59.939 47.826 6.36 0.00 41.52 4.35
307 308 4.482386 TCGAAATAGCGATATTCGGAAGG 58.518 43.478 18.27 3.57 44.39 3.46
308 309 5.061064 CCTTCGAAATAGCGATATTCGGAAG 59.939 44.000 24.76 24.76 44.39 3.46
309 310 4.921515 CCTTCGAAATAGCGATATTCGGAA 59.078 41.667 18.27 16.39 44.39 4.30
310 311 4.482386 CCTTCGAAATAGCGATATTCGGA 58.518 43.478 18.27 12.59 44.39 4.55
311 312 3.060895 GCCTTCGAAATAGCGATATTCGG 59.939 47.826 18.27 9.97 44.39 4.30
312 313 3.060895 GGCCTTCGAAATAGCGATATTCG 59.939 47.826 6.36 11.63 45.32 3.34
313 314 4.246458 AGGCCTTCGAAATAGCGATATTC 58.754 43.478 6.36 0.17 40.35 1.75
314 315 4.273148 AGGCCTTCGAAATAGCGATATT 57.727 40.909 0.00 0.00 40.35 1.28
315 316 3.963428 AGGCCTTCGAAATAGCGATAT 57.037 42.857 0.00 0.00 40.35 1.63
316 317 3.746045 AAGGCCTTCGAAATAGCGATA 57.254 42.857 13.78 0.00 40.35 2.92
317 318 2.614057 CAAAGGCCTTCGAAATAGCGAT 59.386 45.455 20.79 0.00 40.35 4.58
318 319 2.006888 CAAAGGCCTTCGAAATAGCGA 58.993 47.619 20.79 0.00 38.72 4.93
319 320 1.531883 GCAAAGGCCTTCGAAATAGCG 60.532 52.381 20.79 0.29 0.00 4.26
320 321 1.745653 AGCAAAGGCCTTCGAAATAGC 59.254 47.619 20.79 13.69 42.56 2.97
321 322 3.009723 TCAGCAAAGGCCTTCGAAATAG 58.990 45.455 20.79 5.70 42.56 1.73
322 323 3.066291 TCAGCAAAGGCCTTCGAAATA 57.934 42.857 20.79 0.00 42.56 1.40
323 324 1.909700 TCAGCAAAGGCCTTCGAAAT 58.090 45.000 20.79 0.00 42.56 2.17
324 325 1.686355 TTCAGCAAAGGCCTTCGAAA 58.314 45.000 20.79 6.56 42.56 3.46
325 326 1.686355 TTTCAGCAAAGGCCTTCGAA 58.314 45.000 20.79 15.84 42.56 3.71
326 327 1.909700 ATTTCAGCAAAGGCCTTCGA 58.090 45.000 20.79 10.51 42.56 3.71
327 328 2.599659 GAATTTCAGCAAAGGCCTTCG 58.400 47.619 20.79 9.32 42.56 3.79
328 329 2.029918 ACGAATTTCAGCAAAGGCCTTC 60.030 45.455 20.79 7.35 42.56 3.46
329 330 1.963515 ACGAATTTCAGCAAAGGCCTT 59.036 42.857 13.78 13.78 42.56 4.35
330 331 1.620822 ACGAATTTCAGCAAAGGCCT 58.379 45.000 0.00 0.00 42.56 5.19
331 332 3.569250 TTACGAATTTCAGCAAAGGCC 57.431 42.857 0.00 0.00 42.56 5.19
332 333 5.898630 TTTTTACGAATTTCAGCAAAGGC 57.101 34.783 0.00 0.00 41.61 4.35
355 356 9.750125 GAAATTCCGGATAGAATAATTTGCTTT 57.250 29.630 4.15 0.00 35.40 3.51
356 357 8.912988 TGAAATTCCGGATAGAATAATTTGCTT 58.087 29.630 4.15 0.00 35.40 3.91
357 358 8.463930 TGAAATTCCGGATAGAATAATTTGCT 57.536 30.769 4.15 0.00 35.40 3.91
358 359 9.696917 AATGAAATTCCGGATAGAATAATTTGC 57.303 29.630 4.15 2.16 35.40 3.68
362 363 9.502091 TCGAAATGAAATTCCGGATAGAATAAT 57.498 29.630 4.15 0.00 33.67 1.28
363 364 8.896320 TCGAAATGAAATTCCGGATAGAATAA 57.104 30.769 4.15 0.00 33.67 1.40
364 365 8.896320 TTCGAAATGAAATTCCGGATAGAATA 57.104 30.769 4.15 0.00 33.67 1.75
365 366 7.801716 TTCGAAATGAAATTCCGGATAGAAT 57.198 32.000 4.15 0.00 33.67 2.40
366 367 7.618502 TTTCGAAATGAAATTCCGGATAGAA 57.381 32.000 4.15 0.00 41.59 2.10
378 379 8.327429 GCTCTTCAAAATTGTTTCGAAATGAAA 58.673 29.630 14.69 9.64 44.19 2.69
379 380 7.706179 AGCTCTTCAAAATTGTTTCGAAATGAA 59.294 29.630 14.69 16.14 33.85 2.57
380 381 7.202526 AGCTCTTCAAAATTGTTTCGAAATGA 58.797 30.769 14.69 9.56 0.00 2.57
381 382 7.398834 AGCTCTTCAAAATTGTTTCGAAATG 57.601 32.000 14.69 7.21 0.00 2.32
382 383 7.096477 CGAAGCTCTTCAAAATTGTTTCGAAAT 60.096 33.333 14.69 0.00 39.46 2.17
383 384 6.196353 CGAAGCTCTTCAAAATTGTTTCGAAA 59.804 34.615 6.47 6.47 39.46 3.46
384 385 5.681105 CGAAGCTCTTCAAAATTGTTTCGAA 59.319 36.000 9.92 0.00 39.46 3.71
385 386 5.204833 CGAAGCTCTTCAAAATTGTTTCGA 58.795 37.500 9.92 0.00 39.46 3.71
386 387 4.970003 ACGAAGCTCTTCAAAATTGTTTCG 59.030 37.500 9.92 0.00 39.46 3.46
387 388 5.173854 CCACGAAGCTCTTCAAAATTGTTTC 59.826 40.000 9.92 0.00 39.46 2.78
388 389 5.043248 CCACGAAGCTCTTCAAAATTGTTT 58.957 37.500 9.92 0.00 39.46 2.83
389 390 4.610945 CCACGAAGCTCTTCAAAATTGTT 58.389 39.130 9.92 0.00 39.46 2.83
390 391 3.550842 GCCACGAAGCTCTTCAAAATTGT 60.551 43.478 9.92 0.00 39.46 2.71
391 392 2.982470 GCCACGAAGCTCTTCAAAATTG 59.018 45.455 9.92 0.00 39.46 2.32
392 393 2.622942 TGCCACGAAGCTCTTCAAAATT 59.377 40.909 9.92 0.00 39.46 1.82
393 394 2.229792 TGCCACGAAGCTCTTCAAAAT 58.770 42.857 9.92 0.00 39.46 1.82
394 395 1.674359 TGCCACGAAGCTCTTCAAAA 58.326 45.000 9.92 0.00 39.46 2.44
395 396 1.806542 GATGCCACGAAGCTCTTCAAA 59.193 47.619 9.92 0.00 39.46 2.69
396 397 1.270785 TGATGCCACGAAGCTCTTCAA 60.271 47.619 9.92 0.00 39.46 2.69
397 398 0.321346 TGATGCCACGAAGCTCTTCA 59.679 50.000 9.92 0.00 39.46 3.02
398 399 1.661341 ATGATGCCACGAAGCTCTTC 58.339 50.000 0.00 0.00 36.29 2.87
399 400 2.555199 GTATGATGCCACGAAGCTCTT 58.445 47.619 0.00 0.00 0.00 2.85
400 401 1.536922 CGTATGATGCCACGAAGCTCT 60.537 52.381 0.00 0.00 40.56 4.09
401 402 0.855349 CGTATGATGCCACGAAGCTC 59.145 55.000 0.00 0.00 40.56 4.09
402 403 1.154205 GCGTATGATGCCACGAAGCT 61.154 55.000 0.00 0.00 40.56 3.74
403 404 1.276844 GCGTATGATGCCACGAAGC 59.723 57.895 0.00 0.00 40.56 3.86
411 412 2.544267 GGAAGTAACAGGCGTATGATGC 59.456 50.000 0.00 0.00 0.00 3.91
412 413 2.794910 CGGAAGTAACAGGCGTATGATG 59.205 50.000 0.00 0.00 0.00 3.07
413 414 2.223971 CCGGAAGTAACAGGCGTATGAT 60.224 50.000 0.00 0.00 0.00 2.45
414 415 1.135527 CCGGAAGTAACAGGCGTATGA 59.864 52.381 0.00 0.00 0.00 2.15
415 416 1.567504 CCGGAAGTAACAGGCGTATG 58.432 55.000 0.00 0.00 0.00 2.39
416 417 0.179092 GCCGGAAGTAACAGGCGTAT 60.179 55.000 5.05 0.00 40.68 3.06
417 418 1.216178 GCCGGAAGTAACAGGCGTA 59.784 57.895 5.05 0.00 40.68 4.42
418 419 2.047560 GCCGGAAGTAACAGGCGT 60.048 61.111 5.05 0.00 40.68 5.68
421 422 3.536956 TCATTAGCCGGAAGTAACAGG 57.463 47.619 5.05 0.00 0.00 4.00
422 423 4.693283 TCATCATTAGCCGGAAGTAACAG 58.307 43.478 5.05 0.00 0.00 3.16
423 424 4.746535 TCATCATTAGCCGGAAGTAACA 57.253 40.909 5.05 0.00 0.00 2.41
424 425 4.024809 GCTTCATCATTAGCCGGAAGTAAC 60.025 45.833 5.05 0.00 37.77 2.50
425 426 4.127171 GCTTCATCATTAGCCGGAAGTAA 58.873 43.478 5.05 0.00 37.77 2.24
426 427 3.133901 TGCTTCATCATTAGCCGGAAGTA 59.866 43.478 5.05 0.00 37.77 2.24
427 428 2.092968 TGCTTCATCATTAGCCGGAAGT 60.093 45.455 5.05 0.00 37.77 3.01
428 429 2.564771 TGCTTCATCATTAGCCGGAAG 58.435 47.619 5.05 0.00 38.34 3.46
429 430 2.708216 TGCTTCATCATTAGCCGGAA 57.292 45.000 5.05 0.00 36.56 4.30
430 431 2.708216 TTGCTTCATCATTAGCCGGA 57.292 45.000 5.05 0.00 36.56 5.14
431 432 2.030540 CCATTGCTTCATCATTAGCCGG 60.031 50.000 0.00 0.00 36.56 6.13
432 433 2.880268 TCCATTGCTTCATCATTAGCCG 59.120 45.455 0.00 0.00 36.56 5.52
433 434 5.464030 AATCCATTGCTTCATCATTAGCC 57.536 39.130 0.00 0.00 36.56 3.93
434 435 7.781548 AAAAATCCATTGCTTCATCATTAGC 57.218 32.000 0.00 0.00 37.89 3.09
456 457 7.483375 CACGTTGTCTGTCAAAGTATTGAAAAA 59.517 33.333 6.00 0.00 46.66 1.94
457 458 6.964370 CACGTTGTCTGTCAAAGTATTGAAAA 59.036 34.615 6.00 0.00 46.66 2.29
458 459 6.314152 TCACGTTGTCTGTCAAAGTATTGAAA 59.686 34.615 6.00 0.00 46.66 2.69
459 460 5.813157 TCACGTTGTCTGTCAAAGTATTGAA 59.187 36.000 6.00 0.00 46.66 2.69
460 461 5.233476 GTCACGTTGTCTGTCAAAGTATTGA 59.767 40.000 6.00 0.00 44.30 2.57
461 462 5.006261 TGTCACGTTGTCTGTCAAAGTATTG 59.994 40.000 6.00 0.00 44.30 1.90
462 463 5.113383 TGTCACGTTGTCTGTCAAAGTATT 58.887 37.500 6.00 0.00 44.30 1.89
463 464 4.689071 TGTCACGTTGTCTGTCAAAGTAT 58.311 39.130 6.00 0.00 44.30 2.12
464 465 4.112716 TGTCACGTTGTCTGTCAAAGTA 57.887 40.909 6.00 0.00 44.30 2.24
465 466 2.967362 TGTCACGTTGTCTGTCAAAGT 58.033 42.857 1.10 1.10 46.29 2.66
466 467 5.845985 ATATGTCACGTTGTCTGTCAAAG 57.154 39.130 0.00 0.00 40.39 2.77
467 468 6.683715 TCTATATGTCACGTTGTCTGTCAAA 58.316 36.000 0.00 0.00 37.81 2.69
468 469 6.262193 TCTATATGTCACGTTGTCTGTCAA 57.738 37.500 0.00 0.00 0.00 3.18
469 470 5.890424 TCTATATGTCACGTTGTCTGTCA 57.110 39.130 0.00 0.00 0.00 3.58
470 471 8.851960 TTATTCTATATGTCACGTTGTCTGTC 57.148 34.615 0.00 0.00 0.00 3.51
485 486 9.765795 GCGGGCTAACAGAATATTATTCTATAT 57.234 33.333 16.62 9.66 0.00 0.86
486 487 7.919091 CGCGGGCTAACAGAATATTATTCTATA 59.081 37.037 16.62 12.32 0.00 1.31
487 488 6.757010 CGCGGGCTAACAGAATATTATTCTAT 59.243 38.462 16.62 11.92 0.00 1.98
488 489 6.097356 CGCGGGCTAACAGAATATTATTCTA 58.903 40.000 16.62 3.56 0.00 2.10
536 538 5.985530 GCTTTTTCCTAGTTTTGCACATTCT 59.014 36.000 0.00 0.00 0.00 2.40
541 543 5.220586 GGTTTGCTTTTTCCTAGTTTTGCAC 60.221 40.000 0.00 0.00 0.00 4.57
552 554 1.977854 AGGATGGGGTTTGCTTTTTCC 59.022 47.619 0.00 0.00 0.00 3.13
577 579 3.625649 TTGTTCTTTTTGCTTTGGGCT 57.374 38.095 0.00 0.00 42.39 5.19
629 631 1.974236 GATCGGGGTCTGGATGAAGAT 59.026 52.381 0.00 0.00 0.00 2.40
631 633 0.394565 GGATCGGGGTCTGGATGAAG 59.605 60.000 0.00 0.00 0.00 3.02
633 635 1.459539 GGGATCGGGGTCTGGATGA 60.460 63.158 0.00 0.00 0.00 2.92
634 636 2.520536 GGGGATCGGGGTCTGGATG 61.521 68.421 0.00 0.00 0.00 3.51
1030 1565 2.420022 ACGAATTGGAGCTTGTGCATAC 59.580 45.455 0.00 0.00 42.74 2.39
1101 1654 6.972328 TGACACATAGTTTGTTCTGCTTTTTC 59.028 34.615 0.00 0.00 36.00 2.29
1190 1746 5.253330 ACAGTTTCTGAACTTGGTTTGAGA 58.747 37.500 3.70 0.00 43.48 3.27
1263 1852 4.218200 TCCAAGCCACAATTACAATCACAG 59.782 41.667 0.00 0.00 0.00 3.66
1319 1913 4.466827 ACTACCGAATGTTTTTGGGTTCT 58.533 39.130 0.00 0.00 40.33 3.01
1504 2098 1.418264 GACAAGGGCCTCTATCCTTCC 59.582 57.143 6.46 0.00 41.06 3.46
1600 2194 4.864247 CACCAAACCTGACAAAACTTCAAG 59.136 41.667 0.00 0.00 0.00 3.02
1677 2271 4.980805 GGACGGCCAGCGTTGTCA 62.981 66.667 0.00 0.00 33.04 3.58
1864 2461 6.759827 CCTCCTCCTGCAATTGAAAATTATTG 59.240 38.462 10.34 0.00 35.39 1.90
1922 2571 2.287547 GGACTGAAAATCGCAGCAAACA 60.288 45.455 0.00 0.00 36.86 2.83
1962 2611 3.154710 AGCTTTTTAGTTACCCTGGTGC 58.845 45.455 0.00 0.00 0.00 5.01
2061 2710 7.067859 AGAGCTTGATTTATATCAGCAAAGCAA 59.932 33.333 15.49 7.01 40.75 3.91
2147 2907 5.912396 TGCGTGACACATTTTGATTTAGTTC 59.088 36.000 6.37 0.00 0.00 3.01
2225 2989 9.607988 ATTAAGGAAACAGTTTTTAAACTTGGG 57.392 29.630 5.16 0.00 46.52 4.12
2405 3174 6.223120 GTTGAACTCAAATTTGGGCTTACAT 58.777 36.000 18.16 0.00 37.63 2.29
2560 3334 6.757897 TGAACAATGTCAGTTTTCAGAAGT 57.242 33.333 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.