Multiple sequence alignment - TraesCS7A01G298800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G298800 chr7A 100.000 5600 0 0 1 5600 407295196 407300795 0.000000e+00 10342.0
1 TraesCS7A01G298800 chr7A 93.566 715 46 0 1 715 407261862 407262576 0.000000e+00 1066.0
2 TraesCS7A01G298800 chr7A 91.317 714 57 5 3 715 110122482 110123191 0.000000e+00 970.0
3 TraesCS7A01G298800 chr7A 91.201 716 57 6 1 715 576561784 576561074 0.000000e+00 968.0
4 TraesCS7A01G298800 chr7A 91.049 715 60 4 1 715 301242728 301243438 0.000000e+00 963.0
5 TraesCS7A01G298800 chr7A 81.111 270 35 9 5283 5539 125267711 125267977 9.510000e-48 202.0
6 TraesCS7A01G298800 chr7D 96.776 4312 57 19 990 5279 368009552 368013803 0.000000e+00 7118.0
7 TraesCS7A01G298800 chr7D 88.667 300 13 7 714 994 368009229 368009526 4.150000e-91 346.0
8 TraesCS7A01G298800 chr7B 97.907 3296 42 2 990 4285 312813003 312816271 0.000000e+00 5679.0
9 TraesCS7A01G298800 chr7B 94.575 682 19 10 4455 5122 312816805 312817482 0.000000e+00 1038.0
10 TraesCS7A01G298800 chr7B 98.561 278 4 0 5283 5560 237915537 237915814 5.040000e-135 492.0
11 TraesCS7A01G298800 chr7B 97.931 145 3 0 847 991 312812831 312812975 9.310000e-63 252.0
12 TraesCS7A01G298800 chr7B 95.541 157 6 1 4300 4456 312816544 312816699 3.350000e-62 250.0
13 TraesCS7A01G298800 chr7B 96.154 130 5 0 5150 5279 312817569 312817698 4.390000e-51 213.0
14 TraesCS7A01G298800 chr7B 97.826 46 1 0 4271 4316 312816270 312816315 4.650000e-11 80.5
15 TraesCS7A01G298800 chr2A 91.304 713 59 3 1 713 680595800 680595091 0.000000e+00 970.0
16 TraesCS7A01G298800 chr3A 91.384 708 58 3 6 713 292103934 292104638 0.000000e+00 966.0
17 TraesCS7A01G298800 chr3A 91.074 717 58 5 1 717 205229835 205230545 0.000000e+00 965.0
18 TraesCS7A01G298800 chr3A 99.071 323 3 0 5278 5600 647445198 647445520 1.050000e-161 580.0
19 TraesCS7A01G298800 chr3A 79.924 264 39 8 5284 5537 75415556 75415815 1.240000e-41 182.0
20 TraesCS7A01G298800 chr1A 91.176 714 57 6 1 712 520314657 520315366 0.000000e+00 965.0
21 TraesCS7A01G298800 chr1A 90.934 717 59 6 1 715 238561640 238560928 0.000000e+00 959.0
22 TraesCS7A01G298800 chr1B 99.057 318 3 0 5283 5600 91000957 91000640 6.290000e-159 571.0
23 TraesCS7A01G298800 chr3B 99.057 318 2 1 5283 5600 712991803 712992119 2.260000e-158 569.0
24 TraesCS7A01G298800 chr2D 84.733 262 32 7 992 1249 90824846 90824589 7.200000e-64 255.0
25 TraesCS7A01G298800 chr2B 84.477 277 22 11 992 1262 143938285 143938024 2.590000e-63 254.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G298800 chr7A 407295196 407300795 5599 False 10342.000000 10342 100.000000 1 5600 1 chr7A.!!$F5 5599
1 TraesCS7A01G298800 chr7A 407261862 407262576 714 False 1066.000000 1066 93.566000 1 715 1 chr7A.!!$F4 714
2 TraesCS7A01G298800 chr7A 110122482 110123191 709 False 970.000000 970 91.317000 3 715 1 chr7A.!!$F1 712
3 TraesCS7A01G298800 chr7A 576561074 576561784 710 True 968.000000 968 91.201000 1 715 1 chr7A.!!$R1 714
4 TraesCS7A01G298800 chr7A 301242728 301243438 710 False 963.000000 963 91.049000 1 715 1 chr7A.!!$F3 714
5 TraesCS7A01G298800 chr7D 368009229 368013803 4574 False 3732.000000 7118 92.721500 714 5279 2 chr7D.!!$F1 4565
6 TraesCS7A01G298800 chr7B 312812831 312817698 4867 False 1252.083333 5679 96.655667 847 5279 6 chr7B.!!$F2 4432
7 TraesCS7A01G298800 chr2A 680595091 680595800 709 True 970.000000 970 91.304000 1 713 1 chr2A.!!$R1 712
8 TraesCS7A01G298800 chr3A 292103934 292104638 704 False 966.000000 966 91.384000 6 713 1 chr3A.!!$F3 707
9 TraesCS7A01G298800 chr3A 205229835 205230545 710 False 965.000000 965 91.074000 1 717 1 chr3A.!!$F2 716
10 TraesCS7A01G298800 chr1A 520314657 520315366 709 False 965.000000 965 91.176000 1 712 1 chr1A.!!$F1 711
11 TraesCS7A01G298800 chr1A 238560928 238561640 712 True 959.000000 959 90.934000 1 715 1 chr1A.!!$R1 714

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
55 56 0.719465 GAATCAACCGCGTGTGTAGG 59.281 55.000 4.92 0.00 0.00 3.18 F
292 297 0.965866 AGTCTTGATCGCGAGGGTGA 60.966 55.000 16.66 7.75 37.04 4.02 F
1265 1325 1.289530 GGAGGAGAAGAGGGAGAAGGA 59.710 57.143 0.00 0.00 0.00 3.36 F
1275 1335 1.996291 AGGGAGAAGGAAAGGGAAAGG 59.004 52.381 0.00 0.00 0.00 3.11 F
1805 1865 3.282021 CCATGGATGTTGACCTACCAAG 58.718 50.000 5.56 0.00 34.28 3.61 F
2958 3018 1.274703 TTCAGATGGGTGGGAGGAGC 61.275 60.000 0.00 0.00 0.00 4.70 F
3576 3636 1.713597 GGAAATCTGCAAAAAGGGCG 58.286 50.000 0.00 0.00 0.00 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1273 1333 0.341609 CTCTCCCTCTCCCTTTCCCT 59.658 60.000 0.00 0.0 0.0 4.20 R
1274 1334 0.692756 CCTCTCCCTCTCCCTTTCCC 60.693 65.000 0.00 0.0 0.0 3.97 R
2067 2127 1.394917 GCCTCGCCATTATTAGCATCG 59.605 52.381 0.00 0.0 0.0 3.84 R
2805 2865 2.205022 TCTGAGGCTCAAAACCCATG 57.795 50.000 19.29 4.2 0.0 3.66 R
3507 3567 0.331616 AACCACTTCCACCATAGCCC 59.668 55.000 0.00 0.0 0.0 5.19 R
3791 3851 2.287644 GTGGCTTCATTGTTTTGTTGGC 59.712 45.455 0.00 0.0 0.0 4.52 R
5551 6056 0.097674 GCATCCAACACATCGCAGTC 59.902 55.000 0.00 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 0.719465 GAATCAACCGCGTGTGTAGG 59.281 55.000 4.92 0.00 0.00 3.18
77 78 0.976641 TGATGGTCTCTTCTTGGCGT 59.023 50.000 0.00 0.00 0.00 5.68
216 218 4.585581 TGCGTAAGTTAGCCACCATCTATA 59.414 41.667 3.04 0.00 41.68 1.31
292 297 0.965866 AGTCTTGATCGCGAGGGTGA 60.966 55.000 16.66 7.75 37.04 4.02
339 345 3.498397 ACAGATACTTCCAAACAGTTGCG 59.502 43.478 0.00 0.00 33.01 4.85
462 468 3.781307 CCAGTTGGGGCGATCGGA 61.781 66.667 18.30 0.00 0.00 4.55
478 484 2.398588 TCGGAGATCTAGCATTTGGGT 58.601 47.619 0.00 0.00 0.00 4.51
524 530 1.758280 AGTCGGACCTTTGTGTGTACA 59.242 47.619 4.14 0.00 34.31 2.90
568 574 6.612247 TTATGTATTTATGTGAAGTGGCGG 57.388 37.500 0.00 0.00 0.00 6.13
728 734 5.697633 GGTGTTACAAGAAATCAGTCGGTTA 59.302 40.000 0.00 0.00 0.00 2.85
736 742 9.449719 ACAAGAAATCAGTCGGTTAAAATAGAT 57.550 29.630 0.00 0.00 0.00 1.98
774 788 8.312896 TGCTTCGTTGTGACACTTATTATTTA 57.687 30.769 7.20 0.00 0.00 1.40
775 789 8.440059 TGCTTCGTTGTGACACTTATTATTTAG 58.560 33.333 7.20 0.00 0.00 1.85
986 1011 1.474332 AACCGCGTCTAGGGTTTCCA 61.474 55.000 4.92 0.00 43.84 3.53
1037 1091 4.778415 CCGCGTCACCGTCTCCAG 62.778 72.222 4.92 0.00 36.15 3.86
1047 1101 2.348998 GTCTCCAGGCACCACCAG 59.651 66.667 0.00 0.00 43.14 4.00
1264 1324 1.290732 AGGAGGAGAAGAGGGAGAAGG 59.709 57.143 0.00 0.00 0.00 3.46
1265 1325 1.289530 GGAGGAGAAGAGGGAGAAGGA 59.710 57.143 0.00 0.00 0.00 3.36
1266 1326 2.292587 GGAGGAGAAGAGGGAGAAGGAA 60.293 54.545 0.00 0.00 0.00 3.36
1267 1327 3.445987 GAGGAGAAGAGGGAGAAGGAAA 58.554 50.000 0.00 0.00 0.00 3.13
1268 1328 3.449918 AGGAGAAGAGGGAGAAGGAAAG 58.550 50.000 0.00 0.00 0.00 2.62
1269 1329 2.503765 GGAGAAGAGGGAGAAGGAAAGG 59.496 54.545 0.00 0.00 0.00 3.11
1270 1330 2.503765 GAGAAGAGGGAGAAGGAAAGGG 59.496 54.545 0.00 0.00 0.00 3.95
1271 1331 2.114506 AGAAGAGGGAGAAGGAAAGGGA 59.885 50.000 0.00 0.00 0.00 4.20
1272 1332 2.743131 AGAGGGAGAAGGAAAGGGAA 57.257 50.000 0.00 0.00 0.00 3.97
1273 1333 3.005529 AGAGGGAGAAGGAAAGGGAAA 57.994 47.619 0.00 0.00 0.00 3.13
1274 1334 2.916269 AGAGGGAGAAGGAAAGGGAAAG 59.084 50.000 0.00 0.00 0.00 2.62
1275 1335 1.996291 AGGGAGAAGGAAAGGGAAAGG 59.004 52.381 0.00 0.00 0.00 3.11
1805 1865 3.282021 CCATGGATGTTGACCTACCAAG 58.718 50.000 5.56 0.00 34.28 3.61
2028 2088 3.657398 AGACAGATGATGGCAATTGGA 57.343 42.857 7.72 0.00 40.68 3.53
2067 2127 6.446318 GGATGACTCTGACTCAGATTATGAC 58.554 44.000 9.26 0.00 39.92 3.06
2805 2865 6.054295 AGATGAAGCTGATAGGATGTTTGAC 58.946 40.000 0.00 0.00 0.00 3.18
2958 3018 1.274703 TTCAGATGGGTGGGAGGAGC 61.275 60.000 0.00 0.00 0.00 4.70
3507 3567 2.825836 GAGCAGGCCCATGGAACG 60.826 66.667 15.22 0.00 0.00 3.95
3576 3636 1.713597 GGAAATCTGCAAAAAGGGCG 58.286 50.000 0.00 0.00 0.00 6.13
3636 3696 3.808466 TCAGATTCTGACGATGAAGGG 57.192 47.619 12.38 0.00 35.39 3.95
3785 3845 4.070552 GCTTCCTCTGCCGGTCGT 62.071 66.667 1.90 0.00 0.00 4.34
3791 3851 1.445716 CCTCTGCCGGTCGTACCTAG 61.446 65.000 1.90 0.00 35.66 3.02
4098 4158 2.842320 GTCTTCCGTCAAGAAGGCC 58.158 57.895 0.00 0.00 43.10 5.19
4122 4182 1.129437 GCAGAATTGAAGCGTGTCCTC 59.871 52.381 0.00 0.00 0.00 3.71
4237 4297 6.830912 TGGATAAAGTATGGGAGATGTTGAG 58.169 40.000 0.00 0.00 0.00 3.02
4256 4316 7.279615 TGTTGAGATTTTCTTGAGAAGGTACA 58.720 34.615 0.00 0.00 35.21 2.90
4777 5208 5.168526 TGTGAACATGCAGTTTACTGTTC 57.831 39.130 17.65 17.65 44.51 3.18
4809 5240 1.340405 TGGAGAATGCTGCCTTCCTTC 60.340 52.381 13.03 6.28 0.00 3.46
4825 5256 5.010415 CCTTCCTTCTTCTTTTTCATGCAGT 59.990 40.000 0.00 0.00 0.00 4.40
4826 5257 6.462067 CCTTCCTTCTTCTTTTTCATGCAGTT 60.462 38.462 0.00 0.00 0.00 3.16
4876 5307 0.763652 CTGCCTCCCAGATATGCAGT 59.236 55.000 0.00 0.00 44.64 4.40
4877 5308 1.142465 CTGCCTCCCAGATATGCAGTT 59.858 52.381 0.00 0.00 44.64 3.16
4883 5314 4.141620 CCTCCCAGATATGCAGTTTACTGT 60.142 45.833 11.23 0.00 45.45 3.55
4884 5315 5.431765 CTCCCAGATATGCAGTTTACTGTT 58.568 41.667 11.23 2.95 45.45 3.16
4885 5316 5.185454 TCCCAGATATGCAGTTTACTGTTG 58.815 41.667 11.23 2.20 45.45 3.33
4887 5318 5.163723 CCCAGATATGCAGTTTACTGTTGTG 60.164 44.000 11.23 3.99 45.45 3.33
4888 5319 5.643348 CCAGATATGCAGTTTACTGTTGTGA 59.357 40.000 11.23 0.00 45.45 3.58
4937 5381 4.471904 TGGAGATTCATGGTGTACTGTC 57.528 45.455 0.00 0.00 0.00 3.51
5020 5465 3.427161 ACTTTGAAGCTGTGCACTTTC 57.573 42.857 19.41 17.90 0.00 2.62
5021 5466 2.754552 ACTTTGAAGCTGTGCACTTTCA 59.245 40.909 19.41 20.05 0.00 2.69
5047 5492 7.276658 AGAGTGATGACGAAAGCAATAGTTTAG 59.723 37.037 0.00 0.00 0.00 1.85
5126 5599 3.074412 CGCCATTTCTACCTTGTGAACT 58.926 45.455 0.00 0.00 0.00 3.01
5199 5704 2.083774 TGCACTATACTGTTGCAAGCC 58.916 47.619 0.00 0.00 32.17 4.35
5207 5712 1.159285 CTGTTGCAAGCCGAGAATCA 58.841 50.000 0.00 0.00 33.17 2.57
5271 5776 4.202673 GGGGGCCCATATTTTCAGAGATAA 60.203 45.833 26.86 0.00 35.81 1.75
5274 5779 6.015095 GGGGCCCATATTTTCAGAGATAAAAG 60.015 42.308 26.86 0.00 29.93 2.27
5308 5813 3.611766 TTTTTGAAACGGGGCAAAAGA 57.388 38.095 10.10 2.75 42.71 2.52
5309 5814 2.588027 TTTGAAACGGGGCAAAAGAC 57.412 45.000 0.00 0.00 31.64 3.01
5310 5815 1.770294 TTGAAACGGGGCAAAAGACT 58.230 45.000 0.00 0.00 0.00 3.24
5311 5816 1.770294 TGAAACGGGGCAAAAGACTT 58.230 45.000 0.00 0.00 0.00 3.01
5312 5817 1.407258 TGAAACGGGGCAAAAGACTTG 59.593 47.619 0.00 0.00 0.00 3.16
5313 5818 0.104120 AAACGGGGCAAAAGACTTGC 59.896 50.000 0.78 0.78 44.22 4.01
5321 5826 3.163630 GCAAAAGACTTGCCACTTTCA 57.836 42.857 0.00 0.00 39.38 2.69
5322 5827 3.721035 GCAAAAGACTTGCCACTTTCAT 58.279 40.909 0.00 0.00 39.38 2.57
5323 5828 4.122046 GCAAAAGACTTGCCACTTTCATT 58.878 39.130 0.00 0.00 39.38 2.57
5324 5829 4.025480 GCAAAAGACTTGCCACTTTCATTG 60.025 41.667 0.00 0.00 39.38 2.82
5325 5830 5.350633 CAAAAGACTTGCCACTTTCATTGA 58.649 37.500 0.00 0.00 35.66 2.57
5326 5831 5.596836 AAAGACTTGCCACTTTCATTGAA 57.403 34.783 0.00 0.00 31.89 2.69
5327 5832 5.796424 AAGACTTGCCACTTTCATTGAAT 57.204 34.783 0.00 0.00 0.00 2.57
5328 5833 6.899393 AAGACTTGCCACTTTCATTGAATA 57.101 33.333 0.00 0.00 0.00 1.75
5329 5834 6.899393 AGACTTGCCACTTTCATTGAATAA 57.101 33.333 0.00 0.00 0.00 1.40
5330 5835 6.917533 AGACTTGCCACTTTCATTGAATAAG 58.082 36.000 0.00 0.00 0.00 1.73
5331 5836 6.716628 AGACTTGCCACTTTCATTGAATAAGA 59.283 34.615 0.00 0.00 0.00 2.10
5332 5837 7.231317 AGACTTGCCACTTTCATTGAATAAGAA 59.769 33.333 0.00 0.00 0.00 2.52
5333 5838 7.373493 ACTTGCCACTTTCATTGAATAAGAAG 58.627 34.615 0.00 0.00 0.00 2.85
5334 5839 7.231317 ACTTGCCACTTTCATTGAATAAGAAGA 59.769 33.333 0.00 0.00 0.00 2.87
5335 5840 7.523293 TGCCACTTTCATTGAATAAGAAGAA 57.477 32.000 0.00 0.00 0.00 2.52
5336 5841 7.596494 TGCCACTTTCATTGAATAAGAAGAAG 58.404 34.615 0.00 0.00 0.00 2.85
5337 5842 7.031975 GCCACTTTCATTGAATAAGAAGAAGG 58.968 38.462 0.00 4.11 0.00 3.46
5338 5843 7.309438 GCCACTTTCATTGAATAAGAAGAAGGT 60.309 37.037 0.00 0.00 0.00 3.50
5339 5844 8.579863 CCACTTTCATTGAATAAGAAGAAGGTT 58.420 33.333 0.00 0.00 0.00 3.50
5340 5845 9.971922 CACTTTCATTGAATAAGAAGAAGGTTT 57.028 29.630 0.00 0.00 0.00 3.27
5345 5850 8.739972 TCATTGAATAAGAAGAAGGTTTAAGGC 58.260 33.333 0.00 0.00 0.00 4.35
5346 5851 7.462571 TTGAATAAGAAGAAGGTTTAAGGCC 57.537 36.000 0.00 0.00 0.00 5.19
5347 5852 6.548321 TGAATAAGAAGAAGGTTTAAGGCCA 58.452 36.000 5.01 0.00 0.00 5.36
5348 5853 7.007723 TGAATAAGAAGAAGGTTTAAGGCCAA 58.992 34.615 5.01 0.00 0.00 4.52
5349 5854 7.507616 TGAATAAGAAGAAGGTTTAAGGCCAAA 59.492 33.333 5.01 0.00 0.00 3.28
5350 5855 5.791336 AAGAAGAAGGTTTAAGGCCAAAG 57.209 39.130 5.01 0.00 0.00 2.77
5351 5856 4.152647 AGAAGAAGGTTTAAGGCCAAAGG 58.847 43.478 5.01 0.00 0.00 3.11
5363 5868 1.990799 GCCAAAGGCCGAATTACAAC 58.009 50.000 0.00 0.00 44.06 3.32
5364 5869 1.731098 GCCAAAGGCCGAATTACAACG 60.731 52.381 0.00 0.00 44.06 4.10
5365 5870 1.613270 CAAAGGCCGAATTACAACGC 58.387 50.000 0.00 0.00 0.00 4.84
5366 5871 1.068885 CAAAGGCCGAATTACAACGCA 60.069 47.619 0.00 0.00 0.00 5.24
5367 5872 1.459450 AAGGCCGAATTACAACGCAT 58.541 45.000 0.00 0.00 0.00 4.73
5368 5873 1.459450 AGGCCGAATTACAACGCATT 58.541 45.000 0.00 0.00 0.00 3.56
5369 5874 2.634600 AGGCCGAATTACAACGCATTA 58.365 42.857 0.00 0.00 0.00 1.90
5370 5875 2.353579 AGGCCGAATTACAACGCATTAC 59.646 45.455 0.00 0.00 0.00 1.89
5371 5876 2.353579 GGCCGAATTACAACGCATTACT 59.646 45.455 0.00 0.00 0.00 2.24
5372 5877 3.545426 GGCCGAATTACAACGCATTACTC 60.545 47.826 0.00 0.00 0.00 2.59
5373 5878 3.308866 GCCGAATTACAACGCATTACTCT 59.691 43.478 0.00 0.00 0.00 3.24
5374 5879 4.550255 GCCGAATTACAACGCATTACTCTC 60.550 45.833 0.00 0.00 0.00 3.20
5375 5880 4.317139 CCGAATTACAACGCATTACTCTCG 60.317 45.833 0.00 0.00 0.00 4.04
5376 5881 4.506217 GAATTACAACGCATTACTCTCGC 58.494 43.478 0.00 0.00 0.00 5.03
5381 5886 3.474007 CGCATTACTCTCGCGGTAT 57.526 52.632 6.13 0.00 45.08 2.73
5382 5887 1.767289 CGCATTACTCTCGCGGTATT 58.233 50.000 6.13 0.00 45.08 1.89
5383 5888 2.924903 CGCATTACTCTCGCGGTATTA 58.075 47.619 6.13 0.00 45.08 0.98
5384 5889 2.655474 CGCATTACTCTCGCGGTATTAC 59.345 50.000 6.13 0.00 45.08 1.89
5385 5890 3.635331 GCATTACTCTCGCGGTATTACA 58.365 45.455 6.13 0.00 0.00 2.41
5386 5891 4.235360 GCATTACTCTCGCGGTATTACAT 58.765 43.478 6.13 0.00 0.00 2.29
5387 5892 4.684703 GCATTACTCTCGCGGTATTACATT 59.315 41.667 6.13 0.00 0.00 2.71
5388 5893 5.860182 GCATTACTCTCGCGGTATTACATTA 59.140 40.000 6.13 0.00 0.00 1.90
5389 5894 6.183359 GCATTACTCTCGCGGTATTACATTAC 60.183 42.308 6.13 0.00 0.00 1.89
5390 5895 6.624352 TTACTCTCGCGGTATTACATTACT 57.376 37.500 6.13 0.00 0.00 2.24
5391 5896 5.105834 ACTCTCGCGGTATTACATTACTC 57.894 43.478 6.13 0.00 0.00 2.59
5392 5897 4.577693 ACTCTCGCGGTATTACATTACTCA 59.422 41.667 6.13 0.00 0.00 3.41
5393 5898 5.066893 ACTCTCGCGGTATTACATTACTCAA 59.933 40.000 6.13 0.00 0.00 3.02
5394 5899 5.516996 TCTCGCGGTATTACATTACTCAAG 58.483 41.667 6.13 0.00 0.00 3.02
5395 5900 4.046462 TCGCGGTATTACATTACTCAAGC 58.954 43.478 6.13 0.00 0.00 4.01
5396 5901 3.799963 CGCGGTATTACATTACTCAAGCA 59.200 43.478 0.00 0.00 0.00 3.91
5397 5902 4.317839 CGCGGTATTACATTACTCAAGCAC 60.318 45.833 0.00 0.00 0.00 4.40
5398 5903 4.809426 GCGGTATTACATTACTCAAGCACT 59.191 41.667 0.00 0.00 0.00 4.40
5399 5904 5.293569 GCGGTATTACATTACTCAAGCACTT 59.706 40.000 0.00 0.00 0.00 3.16
5400 5905 6.477688 GCGGTATTACATTACTCAAGCACTTA 59.522 38.462 0.00 0.00 0.00 2.24
5401 5906 7.306632 GCGGTATTACATTACTCAAGCACTTAG 60.307 40.741 0.00 0.00 0.00 2.18
5402 5907 7.306632 CGGTATTACATTACTCAAGCACTTAGC 60.307 40.741 0.00 0.00 46.19 3.09
5411 5916 4.770874 GCACTTAGCCCCCGCGAA 62.771 66.667 8.23 0.00 41.18 4.70
5412 5917 2.046700 CACTTAGCCCCCGCGAAA 60.047 61.111 8.23 0.00 41.18 3.46
5413 5918 2.046604 ACTTAGCCCCCGCGAAAC 60.047 61.111 8.23 0.00 41.18 2.78
5414 5919 2.046700 CTTAGCCCCCGCGAAACA 60.047 61.111 8.23 0.00 41.18 2.83
5415 5920 2.358984 TTAGCCCCCGCGAAACAC 60.359 61.111 8.23 0.00 41.18 3.32
5416 5921 3.905437 TTAGCCCCCGCGAAACACC 62.905 63.158 8.23 0.00 41.18 4.16
5419 5924 4.939368 CCCCCGCGAAACACCACA 62.939 66.667 8.23 0.00 0.00 4.17
5420 5925 2.902846 CCCCGCGAAACACCACAA 60.903 61.111 8.23 0.00 0.00 3.33
5421 5926 2.330041 CCCGCGAAACACCACAAC 59.670 61.111 8.23 0.00 0.00 3.32
5422 5927 2.184167 CCCGCGAAACACCACAACT 61.184 57.895 8.23 0.00 0.00 3.16
5423 5928 1.720694 CCCGCGAAACACCACAACTT 61.721 55.000 8.23 0.00 0.00 2.66
5424 5929 0.591236 CCGCGAAACACCACAACTTG 60.591 55.000 8.23 0.00 0.00 3.16
5425 5930 0.098025 CGCGAAACACCACAACTTGT 59.902 50.000 0.00 0.00 0.00 3.16
5426 5931 1.328069 CGCGAAACACCACAACTTGTA 59.672 47.619 0.00 0.00 0.00 2.41
5427 5932 2.711885 GCGAAACACCACAACTTGTAC 58.288 47.619 0.00 0.00 0.00 2.90
5428 5933 2.353579 GCGAAACACCACAACTTGTACT 59.646 45.455 0.00 0.00 0.00 2.73
5429 5934 3.545426 GCGAAACACCACAACTTGTACTC 60.545 47.826 0.00 0.00 0.00 2.59
5430 5935 3.619483 CGAAACACCACAACTTGTACTCA 59.381 43.478 0.00 0.00 0.00 3.41
5431 5936 4.272504 CGAAACACCACAACTTGTACTCAT 59.727 41.667 0.00 0.00 0.00 2.90
5432 5937 5.558273 CGAAACACCACAACTTGTACTCATC 60.558 44.000 0.00 0.00 0.00 2.92
5433 5938 4.689612 ACACCACAACTTGTACTCATCT 57.310 40.909 0.00 0.00 0.00 2.90
5434 5939 5.036117 ACACCACAACTTGTACTCATCTT 57.964 39.130 0.00 0.00 0.00 2.40
5435 5940 5.437060 ACACCACAACTTGTACTCATCTTT 58.563 37.500 0.00 0.00 0.00 2.52
5436 5941 6.588204 ACACCACAACTTGTACTCATCTTTA 58.412 36.000 0.00 0.00 0.00 1.85
5437 5942 7.051623 ACACCACAACTTGTACTCATCTTTAA 58.948 34.615 0.00 0.00 0.00 1.52
5438 5943 7.719633 ACACCACAACTTGTACTCATCTTTAAT 59.280 33.333 0.00 0.00 0.00 1.40
5439 5944 8.567948 CACCACAACTTGTACTCATCTTTAATT 58.432 33.333 0.00 0.00 0.00 1.40
5440 5945 9.131791 ACCACAACTTGTACTCATCTTTAATTT 57.868 29.630 0.00 0.00 0.00 1.82
5441 5946 9.965824 CCACAACTTGTACTCATCTTTAATTTT 57.034 29.630 0.00 0.00 0.00 1.82
5456 5961 9.884636 ATCTTTAATTTTAGCAACAATAACCCC 57.115 29.630 0.00 0.00 0.00 4.95
5457 5962 8.315482 TCTTTAATTTTAGCAACAATAACCCCC 58.685 33.333 0.00 0.00 0.00 5.40
5458 5963 7.554959 TTAATTTTAGCAACAATAACCCCCA 57.445 32.000 0.00 0.00 0.00 4.96
5459 5964 4.875561 TTTTAGCAACAATAACCCCCAC 57.124 40.909 0.00 0.00 0.00 4.61
5460 5965 2.517998 TAGCAACAATAACCCCCACC 57.482 50.000 0.00 0.00 0.00 4.61
5461 5966 0.610785 AGCAACAATAACCCCCACCG 60.611 55.000 0.00 0.00 0.00 4.94
5462 5967 1.600511 GCAACAATAACCCCCACCGG 61.601 60.000 0.00 0.00 0.00 5.28
5463 5968 1.304630 AACAATAACCCCCACCGGC 60.305 57.895 0.00 0.00 0.00 6.13
5464 5969 2.082836 AACAATAACCCCCACCGGCA 62.083 55.000 0.00 0.00 0.00 5.69
5465 5970 2.049767 CAATAACCCCCACCGGCAC 61.050 63.158 0.00 0.00 0.00 5.01
5466 5971 3.291031 AATAACCCCCACCGGCACC 62.291 63.158 0.00 0.00 0.00 5.01
5480 5985 4.708386 CACCGCGGTGCCCCTAAA 62.708 66.667 42.21 0.00 39.39 1.85
5481 5986 4.404098 ACCGCGGTGCCCCTAAAG 62.404 66.667 33.75 0.00 0.00 1.85
5482 5987 4.090588 CCGCGGTGCCCCTAAAGA 62.091 66.667 19.50 0.00 0.00 2.52
5483 5988 2.818274 CGCGGTGCCCCTAAAGAC 60.818 66.667 0.00 0.00 0.00 3.01
5484 5989 2.349755 GCGGTGCCCCTAAAGACA 59.650 61.111 0.00 0.00 0.00 3.41
5485 5990 2.038837 GCGGTGCCCCTAAAGACAC 61.039 63.158 0.00 0.00 0.00 3.67
5486 5991 1.740296 CGGTGCCCCTAAAGACACG 60.740 63.158 0.00 0.00 33.81 4.49
5487 5992 1.675219 GGTGCCCCTAAAGACACGA 59.325 57.895 0.00 0.00 33.81 4.35
5488 5993 0.391263 GGTGCCCCTAAAGACACGAG 60.391 60.000 0.00 0.00 33.81 4.18
5489 5994 1.019805 GTGCCCCTAAAGACACGAGC 61.020 60.000 0.00 0.00 0.00 5.03
5490 5995 1.295423 GCCCCTAAAGACACGAGCA 59.705 57.895 0.00 0.00 0.00 4.26
5491 5996 0.107654 GCCCCTAAAGACACGAGCAT 60.108 55.000 0.00 0.00 0.00 3.79
5492 5997 1.679032 GCCCCTAAAGACACGAGCATT 60.679 52.381 0.00 0.00 0.00 3.56
5493 5998 2.280628 CCCCTAAAGACACGAGCATTC 58.719 52.381 0.00 0.00 0.00 2.67
5494 5999 2.280628 CCCTAAAGACACGAGCATTCC 58.719 52.381 0.00 0.00 0.00 3.01
5495 6000 2.093447 CCCTAAAGACACGAGCATTCCT 60.093 50.000 0.00 0.00 0.00 3.36
5496 6001 3.600388 CCTAAAGACACGAGCATTCCTT 58.400 45.455 0.00 0.00 0.00 3.36
5497 6002 4.003648 CCTAAAGACACGAGCATTCCTTT 58.996 43.478 0.00 0.00 0.00 3.11
5498 6003 4.093556 CCTAAAGACACGAGCATTCCTTTC 59.906 45.833 0.00 0.00 0.00 2.62
5499 6004 3.409026 AAGACACGAGCATTCCTTTCT 57.591 42.857 0.00 0.00 0.00 2.52
5500 6005 3.409026 AGACACGAGCATTCCTTTCTT 57.591 42.857 0.00 0.00 0.00 2.52
5501 6006 3.744660 AGACACGAGCATTCCTTTCTTT 58.255 40.909 0.00 0.00 0.00 2.52
5502 6007 3.748568 AGACACGAGCATTCCTTTCTTTC 59.251 43.478 0.00 0.00 0.00 2.62
5503 6008 2.814336 ACACGAGCATTCCTTTCTTTCC 59.186 45.455 0.00 0.00 0.00 3.13
5504 6009 2.813754 CACGAGCATTCCTTTCTTTCCA 59.186 45.455 0.00 0.00 0.00 3.53
5505 6010 3.077359 ACGAGCATTCCTTTCTTTCCAG 58.923 45.455 0.00 0.00 0.00 3.86
5506 6011 3.244561 ACGAGCATTCCTTTCTTTCCAGA 60.245 43.478 0.00 0.00 0.00 3.86
5507 6012 3.944015 CGAGCATTCCTTTCTTTCCAGAT 59.056 43.478 0.00 0.00 0.00 2.90
5508 6013 4.397417 CGAGCATTCCTTTCTTTCCAGATT 59.603 41.667 0.00 0.00 0.00 2.40
5509 6014 5.105997 CGAGCATTCCTTTCTTTCCAGATTT 60.106 40.000 0.00 0.00 0.00 2.17
5510 6015 6.278172 AGCATTCCTTTCTTTCCAGATTTC 57.722 37.500 0.00 0.00 0.00 2.17
5511 6016 5.186603 AGCATTCCTTTCTTTCCAGATTTCC 59.813 40.000 0.00 0.00 0.00 3.13
5512 6017 5.625426 GCATTCCTTTCTTTCCAGATTTCCC 60.625 44.000 0.00 0.00 0.00 3.97
5513 6018 4.740154 TCCTTTCTTTCCAGATTTCCCA 57.260 40.909 0.00 0.00 0.00 4.37
5514 6019 5.275263 TCCTTTCTTTCCAGATTTCCCAT 57.725 39.130 0.00 0.00 0.00 4.00
5515 6020 5.018809 TCCTTTCTTTCCAGATTTCCCATG 58.981 41.667 0.00 0.00 0.00 3.66
5516 6021 5.018809 CCTTTCTTTCCAGATTTCCCATGA 58.981 41.667 0.00 0.00 0.00 3.07
5517 6022 5.126707 CCTTTCTTTCCAGATTTCCCATGAG 59.873 44.000 0.00 0.00 0.00 2.90
5518 6023 5.519183 TTCTTTCCAGATTTCCCATGAGA 57.481 39.130 0.00 0.00 0.00 3.27
5519 6024 4.848357 TCTTTCCAGATTTCCCATGAGAC 58.152 43.478 0.00 0.00 0.00 3.36
5520 6025 4.537688 TCTTTCCAGATTTCCCATGAGACT 59.462 41.667 0.00 0.00 0.00 3.24
5521 6026 5.726308 TCTTTCCAGATTTCCCATGAGACTA 59.274 40.000 0.00 0.00 0.00 2.59
5522 6027 5.620738 TTCCAGATTTCCCATGAGACTAG 57.379 43.478 0.00 0.00 0.00 2.57
5523 6028 3.389329 TCCAGATTTCCCATGAGACTAGC 59.611 47.826 0.00 0.00 0.00 3.42
5524 6029 3.135348 CCAGATTTCCCATGAGACTAGCA 59.865 47.826 0.00 0.00 0.00 3.49
5525 6030 4.202440 CCAGATTTCCCATGAGACTAGCAT 60.202 45.833 0.00 0.00 0.00 3.79
5526 6031 4.996122 CAGATTTCCCATGAGACTAGCATC 59.004 45.833 0.00 0.00 0.00 3.91
5527 6032 4.657504 AGATTTCCCATGAGACTAGCATCA 59.342 41.667 0.00 0.35 0.00 3.07
5528 6033 5.310068 AGATTTCCCATGAGACTAGCATCAT 59.690 40.000 0.00 4.78 36.60 2.45
5529 6034 6.499699 AGATTTCCCATGAGACTAGCATCATA 59.500 38.462 9.33 0.00 34.42 2.15
5530 6035 6.499106 TTTCCCATGAGACTAGCATCATAA 57.501 37.500 9.33 0.44 34.42 1.90
5531 6036 5.735285 TCCCATGAGACTAGCATCATAAG 57.265 43.478 9.33 5.39 34.42 1.73
5532 6037 5.397360 TCCCATGAGACTAGCATCATAAGA 58.603 41.667 9.33 7.16 34.42 2.10
5533 6038 5.479724 TCCCATGAGACTAGCATCATAAGAG 59.520 44.000 9.33 0.00 34.42 2.85
5534 6039 5.479724 CCCATGAGACTAGCATCATAAGAGA 59.520 44.000 9.33 0.00 34.42 3.10
5535 6040 6.350361 CCCATGAGACTAGCATCATAAGAGAG 60.350 46.154 9.33 0.00 34.42 3.20
5536 6041 6.433716 CCATGAGACTAGCATCATAAGAGAGA 59.566 42.308 9.33 0.00 34.42 3.10
5537 6042 7.362315 CCATGAGACTAGCATCATAAGAGAGAG 60.362 44.444 9.33 0.00 34.42 3.20
5538 6043 5.473162 TGAGACTAGCATCATAAGAGAGAGC 59.527 44.000 0.00 0.00 0.00 4.09
5539 6044 5.384336 AGACTAGCATCATAAGAGAGAGCA 58.616 41.667 0.00 0.00 0.00 4.26
5540 6045 6.012113 AGACTAGCATCATAAGAGAGAGCAT 58.988 40.000 0.00 0.00 0.00 3.79
5541 6046 6.151648 AGACTAGCATCATAAGAGAGAGCATC 59.848 42.308 0.00 0.00 0.00 3.91
5542 6047 4.177165 AGCATCATAAGAGAGAGCATCG 57.823 45.455 0.00 0.00 42.67 3.84
5543 6048 3.056678 AGCATCATAAGAGAGAGCATCGG 60.057 47.826 0.00 0.00 42.67 4.18
5544 6049 3.252400 CATCATAAGAGAGAGCATCGGC 58.748 50.000 0.00 0.00 42.67 5.54
5545 6050 1.615883 TCATAAGAGAGAGCATCGGCC 59.384 52.381 0.00 0.00 42.67 6.13
5546 6051 0.600557 ATAAGAGAGAGCATCGGCCG 59.399 55.000 22.12 22.12 42.67 6.13
5547 6052 1.456196 TAAGAGAGAGCATCGGCCGG 61.456 60.000 27.83 11.74 42.67 6.13
5548 6053 4.959596 GAGAGAGCATCGGCCGGC 62.960 72.222 27.83 21.18 42.67 6.13
5566 6071 2.476051 GCGACTGCGATGTGTTGG 59.524 61.111 0.00 0.00 40.82 3.77
5567 6072 2.027073 GCGACTGCGATGTGTTGGA 61.027 57.895 0.00 0.00 40.82 3.53
5568 6073 1.361668 GCGACTGCGATGTGTTGGAT 61.362 55.000 0.00 0.00 40.82 3.41
5569 6074 0.371301 CGACTGCGATGTGTTGGATG 59.629 55.000 0.00 0.00 40.82 3.51
5570 6075 0.097674 GACTGCGATGTGTTGGATGC 59.902 55.000 0.00 0.00 0.00 3.91
5571 6076 0.606130 ACTGCGATGTGTTGGATGCA 60.606 50.000 0.00 0.00 0.00 3.96
5572 6077 0.522626 CTGCGATGTGTTGGATGCAA 59.477 50.000 0.00 0.00 31.16 4.08
5573 6078 1.133598 CTGCGATGTGTTGGATGCAAT 59.866 47.619 1.94 0.00 31.16 3.56
5574 6079 1.132834 TGCGATGTGTTGGATGCAATC 59.867 47.619 1.94 0.64 44.55 2.67
5585 6090 1.838112 GATGCAATCAGGTTCCACCA 58.162 50.000 0.00 0.00 44.70 4.17
5586 6091 2.170166 GATGCAATCAGGTTCCACCAA 58.830 47.619 0.00 0.00 44.70 3.67
5587 6092 1.619654 TGCAATCAGGTTCCACCAAG 58.380 50.000 0.00 0.00 41.95 3.61
5588 6093 1.144708 TGCAATCAGGTTCCACCAAGA 59.855 47.619 0.00 0.00 41.95 3.02
5589 6094 1.541588 GCAATCAGGTTCCACCAAGAC 59.458 52.381 0.00 0.00 41.95 3.01
5590 6095 2.815589 GCAATCAGGTTCCACCAAGACT 60.816 50.000 0.00 0.00 41.95 3.24
5591 6096 3.490348 CAATCAGGTTCCACCAAGACTT 58.510 45.455 0.00 0.00 41.95 3.01
5592 6097 2.930826 TCAGGTTCCACCAAGACTTC 57.069 50.000 0.00 0.00 41.95 3.01
5593 6098 2.123589 TCAGGTTCCACCAAGACTTCA 58.876 47.619 0.00 0.00 41.95 3.02
5594 6099 2.158813 TCAGGTTCCACCAAGACTTCAC 60.159 50.000 0.00 0.00 41.95 3.18
5595 6100 1.143073 AGGTTCCACCAAGACTTCACC 59.857 52.381 0.00 0.00 41.95 4.02
5596 6101 1.226746 GTTCCACCAAGACTTCACCG 58.773 55.000 0.00 0.00 0.00 4.94
5597 6102 1.124780 TTCCACCAAGACTTCACCGA 58.875 50.000 0.00 0.00 0.00 4.69
5598 6103 1.124780 TCCACCAAGACTTCACCGAA 58.875 50.000 0.00 0.00 0.00 4.30
5599 6104 1.697432 TCCACCAAGACTTCACCGAAT 59.303 47.619 0.00 0.00 0.00 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 1.363744 CCAAGAAGAGACCATCACGC 58.636 55.000 0.00 0.00 0.00 5.34
77 78 0.599558 CGTGTTCACTTCCCGGACTA 59.400 55.000 0.73 0.00 0.00 2.59
156 158 4.659874 GCAACGCAACGGTCGTGG 62.660 66.667 0.00 0.00 40.36 4.94
292 297 1.476085 CACGAGGACTCAGCAATCTCT 59.524 52.381 0.00 0.00 0.00 3.10
339 345 0.532862 CACTGGTATCATCGGCACCC 60.533 60.000 0.00 0.00 0.00 4.61
424 430 3.388024 GGGCTCCACTACTGATCAACATA 59.612 47.826 0.00 0.00 0.00 2.29
425 431 2.171448 GGGCTCCACTACTGATCAACAT 59.829 50.000 0.00 0.00 0.00 2.71
462 468 6.950619 AGAAGAAAAACCCAAATGCTAGATCT 59.049 34.615 0.00 0.00 0.00 2.75
555 561 2.151202 CTTACAACCGCCACTTCACAT 58.849 47.619 0.00 0.00 0.00 3.21
588 594 9.605275 CAATCTCATGTACTGAATAAGAAAGGA 57.395 33.333 0.00 0.00 32.14 3.36
609 615 4.785376 AGAGGGGTAATCTTCACACAATCT 59.215 41.667 0.00 0.00 0.00 2.40
694 700 2.027653 TCTTGTAACACCCATGATGCGA 60.028 45.455 0.00 0.00 0.00 5.10
736 742 4.513692 ACAACGAAGCAGCATGTAAAAGTA 59.486 37.500 0.00 0.00 39.31 2.24
743 749 0.588252 GTCACAACGAAGCAGCATGT 59.412 50.000 0.00 0.00 39.31 3.21
747 753 0.657840 AAGTGTCACAACGAAGCAGC 59.342 50.000 5.62 0.00 0.00 5.25
796 810 6.385033 AGCAAAAAGAATTGTCACATAGCTC 58.615 36.000 0.00 0.00 32.80 4.09
800 821 8.846943 TCTCTAGCAAAAAGAATTGTCACATA 57.153 30.769 0.00 0.00 32.80 2.29
854 876 0.447801 CCAAGCCTTCCGACGATTTG 59.552 55.000 0.00 0.00 0.00 2.32
1047 1101 1.671379 GTCCTTGTCCTTGTCCCGC 60.671 63.158 0.00 0.00 0.00 6.13
1179 1239 0.827368 GATCCCGCTCCTTGTCTCTT 59.173 55.000 0.00 0.00 0.00 2.85
1264 1324 2.378886 TCTCCCTTTCCCTTTCCCTTTC 59.621 50.000 0.00 0.00 0.00 2.62
1265 1325 2.380249 CTCTCCCTTTCCCTTTCCCTTT 59.620 50.000 0.00 0.00 0.00 3.11
1266 1326 1.996291 CTCTCCCTTTCCCTTTCCCTT 59.004 52.381 0.00 0.00 0.00 3.95
1267 1327 1.675007 CTCTCCCTTTCCCTTTCCCT 58.325 55.000 0.00 0.00 0.00 4.20
1268 1328 0.626382 CCTCTCCCTTTCCCTTTCCC 59.374 60.000 0.00 0.00 0.00 3.97
1269 1329 0.626382 CCCTCTCCCTTTCCCTTTCC 59.374 60.000 0.00 0.00 0.00 3.13
1270 1330 1.562008 CTCCCTCTCCCTTTCCCTTTC 59.438 57.143 0.00 0.00 0.00 2.62
1271 1331 1.154434 TCTCCCTCTCCCTTTCCCTTT 59.846 52.381 0.00 0.00 0.00 3.11
1272 1332 0.800239 TCTCCCTCTCCCTTTCCCTT 59.200 55.000 0.00 0.00 0.00 3.95
1273 1333 0.341609 CTCTCCCTCTCCCTTTCCCT 59.658 60.000 0.00 0.00 0.00 4.20
1274 1334 0.692756 CCTCTCCCTCTCCCTTTCCC 60.693 65.000 0.00 0.00 0.00 3.97
1275 1335 0.692756 CCCTCTCCCTCTCCCTTTCC 60.693 65.000 0.00 0.00 0.00 3.13
1805 1865 3.304928 GCTGTTACTGCCATTATCCATGC 60.305 47.826 2.72 0.00 0.00 4.06
2028 2088 5.103771 AGAGTCATCCCCTTGCATAATTCTT 60.104 40.000 0.00 0.00 0.00 2.52
2067 2127 1.394917 GCCTCGCCATTATTAGCATCG 59.605 52.381 0.00 0.00 0.00 3.84
2805 2865 2.205022 TCTGAGGCTCAAAACCCATG 57.795 50.000 19.29 4.20 0.00 3.66
2958 3018 4.384547 TGTGTGATATCTTTGTTCACGACG 59.615 41.667 3.98 0.00 42.07 5.12
3507 3567 0.331616 AACCACTTCCACCATAGCCC 59.668 55.000 0.00 0.00 0.00 5.19
3576 3636 2.299326 ATCCATATTCCCTTGCCTGC 57.701 50.000 0.00 0.00 0.00 4.85
3636 3696 0.953960 CTCCCTGTTTACGCACACCC 60.954 60.000 0.00 0.00 0.00 4.61
3720 3780 1.281867 TGCTGCTGGGCATTACTAGTT 59.718 47.619 0.00 0.00 38.13 2.24
3785 3845 5.278758 GCTTCATTGTTTTGTTGGCTAGGTA 60.279 40.000 0.00 0.00 0.00 3.08
3791 3851 2.287644 GTGGCTTCATTGTTTTGTTGGC 59.712 45.455 0.00 0.00 0.00 4.52
4011 4071 4.453136 CCAACAATTTTGCCTTGAGGAATG 59.547 41.667 0.06 0.00 37.39 2.67
4098 4158 2.975851 GACACGCTTCAATTCTGCTTTG 59.024 45.455 0.00 0.00 0.00 2.77
4777 5208 5.675575 GCAGCATTCTCCATTTAGTGTTCAG 60.676 44.000 0.00 0.00 0.00 3.02
4809 5240 8.411318 ACAGTAAAAACTGCATGAAAAAGAAG 57.589 30.769 0.00 0.00 41.19 2.85
4876 5307 4.688511 AAACTGCGTTCACAACAGTAAA 57.311 36.364 3.68 0.00 43.63 2.01
4877 5308 4.871557 AGTAAACTGCGTTCACAACAGTAA 59.128 37.500 3.68 0.00 43.63 2.24
4982 5427 4.799564 AAGTTGCACCAGAAAACTCAAA 57.200 36.364 0.00 0.00 33.09 2.69
4983 5428 4.219507 TCAAAGTTGCACCAGAAAACTCAA 59.780 37.500 0.00 0.00 33.09 3.02
5020 5465 4.867047 ACTATTGCTTTCGTCATCACTCTG 59.133 41.667 0.00 0.00 0.00 3.35
5021 5466 5.078411 ACTATTGCTTTCGTCATCACTCT 57.922 39.130 0.00 0.00 0.00 3.24
5126 5599 4.081406 ACAGAAAGCATCATGGCTACAAA 58.919 39.130 0.00 0.00 45.07 2.83
5199 5704 3.677121 CCGCCTCAGAAATATGATTCTCG 59.323 47.826 0.00 0.00 37.56 4.04
5207 5712 1.747206 GCACCACCGCCTCAGAAATAT 60.747 52.381 0.00 0.00 0.00 1.28
5288 5793 3.055747 AGTCTTTTGCCCCGTTTCAAAAA 60.056 39.130 0.00 0.00 40.36 1.94
5289 5794 2.498078 AGTCTTTTGCCCCGTTTCAAAA 59.502 40.909 0.00 0.00 39.13 2.44
5290 5795 2.104170 AGTCTTTTGCCCCGTTTCAAA 58.896 42.857 0.00 0.00 0.00 2.69
5291 5796 1.770294 AGTCTTTTGCCCCGTTTCAA 58.230 45.000 0.00 0.00 0.00 2.69
5292 5797 1.407258 CAAGTCTTTTGCCCCGTTTCA 59.593 47.619 0.00 0.00 0.00 2.69
5293 5798 1.868109 GCAAGTCTTTTGCCCCGTTTC 60.868 52.381 0.54 0.00 39.38 2.78
5294 5799 0.104120 GCAAGTCTTTTGCCCCGTTT 59.896 50.000 0.54 0.00 39.38 3.60
5295 5800 1.739667 GCAAGTCTTTTGCCCCGTT 59.260 52.632 0.54 0.00 39.38 4.44
5296 5801 3.443588 GCAAGTCTTTTGCCCCGT 58.556 55.556 0.54 0.00 39.38 5.28
5301 5806 3.163630 TGAAAGTGGCAAGTCTTTTGC 57.836 42.857 3.39 3.39 44.22 3.68
5302 5807 5.350633 TCAATGAAAGTGGCAAGTCTTTTG 58.649 37.500 3.47 0.00 34.60 2.44
5303 5808 5.596836 TCAATGAAAGTGGCAAGTCTTTT 57.403 34.783 3.47 0.00 34.60 2.27
5304 5809 5.596836 TTCAATGAAAGTGGCAAGTCTTT 57.403 34.783 1.63 1.63 36.72 2.52
5305 5810 5.796424 ATTCAATGAAAGTGGCAAGTCTT 57.204 34.783 0.00 0.00 29.44 3.01
5306 5811 6.716628 TCTTATTCAATGAAAGTGGCAAGTCT 59.283 34.615 0.00 0.00 29.44 3.24
5307 5812 6.913170 TCTTATTCAATGAAAGTGGCAAGTC 58.087 36.000 0.00 0.00 29.44 3.01
5308 5813 6.899393 TCTTATTCAATGAAAGTGGCAAGT 57.101 33.333 0.00 0.00 29.44 3.16
5309 5814 7.596494 TCTTCTTATTCAATGAAAGTGGCAAG 58.404 34.615 0.00 0.00 29.44 4.01
5310 5815 7.523293 TCTTCTTATTCAATGAAAGTGGCAA 57.477 32.000 0.00 0.00 29.44 4.52
5311 5816 7.309377 CCTTCTTCTTATTCAATGAAAGTGGCA 60.309 37.037 0.00 0.00 29.44 4.92
5312 5817 7.031975 CCTTCTTCTTATTCAATGAAAGTGGC 58.968 38.462 0.00 0.00 29.44 5.01
5313 5818 8.115490 ACCTTCTTCTTATTCAATGAAAGTGG 57.885 34.615 0.00 3.07 29.44 4.00
5314 5819 9.971922 AAACCTTCTTCTTATTCAATGAAAGTG 57.028 29.630 0.00 0.00 0.00 3.16
5319 5824 8.739972 GCCTTAAACCTTCTTCTTATTCAATGA 58.260 33.333 0.00 0.00 0.00 2.57
5320 5825 7.976175 GGCCTTAAACCTTCTTCTTATTCAATG 59.024 37.037 0.00 0.00 0.00 2.82
5321 5826 7.673926 TGGCCTTAAACCTTCTTCTTATTCAAT 59.326 33.333 3.32 0.00 0.00 2.57
5322 5827 7.007723 TGGCCTTAAACCTTCTTCTTATTCAA 58.992 34.615 3.32 0.00 0.00 2.69
5323 5828 6.548321 TGGCCTTAAACCTTCTTCTTATTCA 58.452 36.000 3.32 0.00 0.00 2.57
5324 5829 7.462571 TTGGCCTTAAACCTTCTTCTTATTC 57.537 36.000 3.32 0.00 0.00 1.75
5325 5830 7.039011 CCTTTGGCCTTAAACCTTCTTCTTATT 60.039 37.037 3.32 0.00 0.00 1.40
5326 5831 6.437477 CCTTTGGCCTTAAACCTTCTTCTTAT 59.563 38.462 3.32 0.00 0.00 1.73
5327 5832 5.773176 CCTTTGGCCTTAAACCTTCTTCTTA 59.227 40.000 3.32 0.00 0.00 2.10
5328 5833 4.588951 CCTTTGGCCTTAAACCTTCTTCTT 59.411 41.667 3.32 0.00 0.00 2.52
5329 5834 4.152647 CCTTTGGCCTTAAACCTTCTTCT 58.847 43.478 3.32 0.00 0.00 2.85
5330 5835 3.306088 GCCTTTGGCCTTAAACCTTCTTC 60.306 47.826 3.32 0.00 44.06 2.87
5331 5836 2.632996 GCCTTTGGCCTTAAACCTTCTT 59.367 45.455 3.32 0.00 44.06 2.52
5332 5837 2.248248 GCCTTTGGCCTTAAACCTTCT 58.752 47.619 3.32 0.00 44.06 2.85
5333 5838 2.743636 GCCTTTGGCCTTAAACCTTC 57.256 50.000 3.32 0.00 44.06 3.46
5345 5850 1.731098 GCGTTGTAATTCGGCCTTTGG 60.731 52.381 0.00 0.00 0.00 3.28
5346 5851 1.068885 TGCGTTGTAATTCGGCCTTTG 60.069 47.619 0.00 0.00 0.00 2.77
5347 5852 1.240256 TGCGTTGTAATTCGGCCTTT 58.760 45.000 0.00 0.00 0.00 3.11
5348 5853 1.459450 ATGCGTTGTAATTCGGCCTT 58.541 45.000 0.00 0.00 0.00 4.35
5349 5854 1.459450 AATGCGTTGTAATTCGGCCT 58.541 45.000 0.00 0.00 0.00 5.19
5350 5855 2.353579 AGTAATGCGTTGTAATTCGGCC 59.646 45.455 0.08 0.00 0.00 6.13
5351 5856 3.308866 AGAGTAATGCGTTGTAATTCGGC 59.691 43.478 0.08 0.00 0.00 5.54
5352 5857 4.317139 CGAGAGTAATGCGTTGTAATTCGG 60.317 45.833 0.08 0.00 0.00 4.30
5353 5858 4.737598 CGAGAGTAATGCGTTGTAATTCG 58.262 43.478 0.08 1.22 0.00 3.34
5354 5859 4.506217 GCGAGAGTAATGCGTTGTAATTC 58.494 43.478 0.08 0.00 0.00 2.17
5355 5860 3.000078 CGCGAGAGTAATGCGTTGTAATT 60.000 43.478 0.00 0.00 46.29 1.40
5356 5861 2.534349 CGCGAGAGTAATGCGTTGTAAT 59.466 45.455 0.00 0.00 46.29 1.89
5357 5862 1.915350 CGCGAGAGTAATGCGTTGTAA 59.085 47.619 0.00 0.00 46.29 2.41
5358 5863 1.541475 CGCGAGAGTAATGCGTTGTA 58.459 50.000 0.00 0.00 46.29 2.41
5359 5864 2.359792 CGCGAGAGTAATGCGTTGT 58.640 52.632 0.00 0.00 46.29 3.32
5364 5869 3.635331 TGTAATACCGCGAGAGTAATGC 58.365 45.455 8.23 0.00 0.00 3.56
5365 5870 7.082602 AGTAATGTAATACCGCGAGAGTAATG 58.917 38.462 8.23 0.00 0.00 1.90
5366 5871 7.040892 TGAGTAATGTAATACCGCGAGAGTAAT 60.041 37.037 8.23 0.00 0.00 1.89
5367 5872 6.260714 TGAGTAATGTAATACCGCGAGAGTAA 59.739 38.462 8.23 0.00 0.00 2.24
5368 5873 5.759763 TGAGTAATGTAATACCGCGAGAGTA 59.240 40.000 8.23 0.95 0.00 2.59
5369 5874 4.577693 TGAGTAATGTAATACCGCGAGAGT 59.422 41.667 8.23 0.00 0.00 3.24
5370 5875 5.104562 TGAGTAATGTAATACCGCGAGAG 57.895 43.478 8.23 0.00 0.00 3.20
5371 5876 5.503662 TTGAGTAATGTAATACCGCGAGA 57.496 39.130 8.23 0.00 0.00 4.04
5372 5877 4.148348 GCTTGAGTAATGTAATACCGCGAG 59.852 45.833 8.23 0.00 0.00 5.03
5373 5878 4.046462 GCTTGAGTAATGTAATACCGCGA 58.954 43.478 8.23 0.00 0.00 5.87
5374 5879 3.799963 TGCTTGAGTAATGTAATACCGCG 59.200 43.478 0.00 0.00 0.00 6.46
5375 5880 4.809426 AGTGCTTGAGTAATGTAATACCGC 59.191 41.667 0.00 0.00 0.00 5.68
5376 5881 6.903883 AAGTGCTTGAGTAATGTAATACCG 57.096 37.500 0.00 0.00 0.00 4.02
5377 5882 7.041984 GGCTAAGTGCTTGAGTAATGTAATACC 60.042 40.741 0.00 0.00 42.39 2.73
5378 5883 7.041984 GGGCTAAGTGCTTGAGTAATGTAATAC 60.042 40.741 0.00 0.00 42.39 1.89
5379 5884 6.990349 GGGCTAAGTGCTTGAGTAATGTAATA 59.010 38.462 0.00 0.00 42.39 0.98
5380 5885 5.823045 GGGCTAAGTGCTTGAGTAATGTAAT 59.177 40.000 0.00 0.00 42.39 1.89
5381 5886 5.183228 GGGCTAAGTGCTTGAGTAATGTAA 58.817 41.667 0.00 0.00 42.39 2.41
5382 5887 4.383770 GGGGCTAAGTGCTTGAGTAATGTA 60.384 45.833 0.00 0.00 42.39 2.29
5383 5888 3.610911 GGGCTAAGTGCTTGAGTAATGT 58.389 45.455 0.00 0.00 42.39 2.71
5384 5889 2.945668 GGGGCTAAGTGCTTGAGTAATG 59.054 50.000 0.00 0.00 42.39 1.90
5385 5890 2.092375 GGGGGCTAAGTGCTTGAGTAAT 60.092 50.000 0.00 0.00 42.39 1.89
5386 5891 1.280998 GGGGGCTAAGTGCTTGAGTAA 59.719 52.381 0.00 0.00 42.39 2.24
5387 5892 0.909623 GGGGGCTAAGTGCTTGAGTA 59.090 55.000 0.00 0.00 42.39 2.59
5388 5893 1.685820 GGGGGCTAAGTGCTTGAGT 59.314 57.895 0.00 0.00 42.39 3.41
5389 5894 1.450312 CGGGGGCTAAGTGCTTGAG 60.450 63.158 0.00 0.00 42.39 3.02
5390 5895 2.668632 CGGGGGCTAAGTGCTTGA 59.331 61.111 0.00 0.00 42.39 3.02
5391 5896 3.134127 GCGGGGGCTAAGTGCTTG 61.134 66.667 0.00 0.00 42.39 4.01
5392 5897 4.778143 CGCGGGGGCTAAGTGCTT 62.778 66.667 0.00 0.00 42.39 3.91
5394 5899 4.770874 TTCGCGGGGGCTAAGTGC 62.771 66.667 6.13 0.00 41.94 4.40
5395 5900 2.046700 TTTCGCGGGGGCTAAGTG 60.047 61.111 6.13 0.00 0.00 3.16
5396 5901 2.046604 GTTTCGCGGGGGCTAAGT 60.047 61.111 6.13 0.00 0.00 2.24
5397 5902 2.046700 TGTTTCGCGGGGGCTAAG 60.047 61.111 6.13 0.00 0.00 2.18
5398 5903 2.358984 GTGTTTCGCGGGGGCTAA 60.359 61.111 6.13 0.00 0.00 3.09
5399 5904 4.397832 GGTGTTTCGCGGGGGCTA 62.398 66.667 6.13 0.00 0.00 3.93
5402 5907 4.939368 TGTGGTGTTTCGCGGGGG 62.939 66.667 6.13 0.00 0.00 5.40
5403 5908 2.902846 TTGTGGTGTTTCGCGGGG 60.903 61.111 6.13 0.00 0.00 5.73
5404 5909 1.720694 AAGTTGTGGTGTTTCGCGGG 61.721 55.000 6.13 0.00 0.00 6.13
5405 5910 0.591236 CAAGTTGTGGTGTTTCGCGG 60.591 55.000 6.13 0.00 0.00 6.46
5406 5911 0.098025 ACAAGTTGTGGTGTTTCGCG 59.902 50.000 7.96 0.00 0.00 5.87
5407 5912 2.353579 AGTACAAGTTGTGGTGTTTCGC 59.646 45.455 18.90 0.00 0.00 4.70
5408 5913 3.619483 TGAGTACAAGTTGTGGTGTTTCG 59.381 43.478 18.90 0.00 0.00 3.46
5409 5914 5.527582 AGATGAGTACAAGTTGTGGTGTTTC 59.472 40.000 18.90 8.32 0.00 2.78
5410 5915 5.437060 AGATGAGTACAAGTTGTGGTGTTT 58.563 37.500 18.90 0.00 0.00 2.83
5411 5916 5.036117 AGATGAGTACAAGTTGTGGTGTT 57.964 39.130 18.90 0.75 0.00 3.32
5412 5917 4.689612 AGATGAGTACAAGTTGTGGTGT 57.310 40.909 18.90 0.00 0.00 4.16
5413 5918 7.490962 TTAAAGATGAGTACAAGTTGTGGTG 57.509 36.000 18.90 0.00 0.00 4.17
5414 5919 8.691661 AATTAAAGATGAGTACAAGTTGTGGT 57.308 30.769 18.90 5.21 0.00 4.16
5415 5920 9.965824 AAAATTAAAGATGAGTACAAGTTGTGG 57.034 29.630 18.90 0.00 0.00 4.17
5430 5935 9.884636 GGGGTTATTGTTGCTAAAATTAAAGAT 57.115 29.630 0.00 0.00 0.00 2.40
5431 5936 8.315482 GGGGGTTATTGTTGCTAAAATTAAAGA 58.685 33.333 0.00 0.00 0.00 2.52
5432 5937 8.097662 TGGGGGTTATTGTTGCTAAAATTAAAG 58.902 33.333 0.00 0.00 0.00 1.85
5433 5938 7.878644 GTGGGGGTTATTGTTGCTAAAATTAAA 59.121 33.333 0.00 0.00 0.00 1.52
5434 5939 7.387643 GTGGGGGTTATTGTTGCTAAAATTAA 58.612 34.615 0.00 0.00 0.00 1.40
5435 5940 6.070710 GGTGGGGGTTATTGTTGCTAAAATTA 60.071 38.462 0.00 0.00 0.00 1.40
5436 5941 5.280266 GGTGGGGGTTATTGTTGCTAAAATT 60.280 40.000 0.00 0.00 0.00 1.82
5437 5942 4.224147 GGTGGGGGTTATTGTTGCTAAAAT 59.776 41.667 0.00 0.00 0.00 1.82
5438 5943 3.579151 GGTGGGGGTTATTGTTGCTAAAA 59.421 43.478 0.00 0.00 0.00 1.52
5439 5944 3.166679 GGTGGGGGTTATTGTTGCTAAA 58.833 45.455 0.00 0.00 0.00 1.85
5440 5945 2.810164 GGTGGGGGTTATTGTTGCTAA 58.190 47.619 0.00 0.00 0.00 3.09
5441 5946 1.340211 CGGTGGGGGTTATTGTTGCTA 60.340 52.381 0.00 0.00 0.00 3.49
5442 5947 0.610785 CGGTGGGGGTTATTGTTGCT 60.611 55.000 0.00 0.00 0.00 3.91
5443 5948 1.600511 CCGGTGGGGGTTATTGTTGC 61.601 60.000 0.00 0.00 0.00 4.17
5444 5949 1.600511 GCCGGTGGGGGTTATTGTTG 61.601 60.000 1.90 0.00 35.78 3.33
5445 5950 1.304630 GCCGGTGGGGGTTATTGTT 60.305 57.895 1.90 0.00 35.78 2.83
5446 5951 2.357446 GCCGGTGGGGGTTATTGT 59.643 61.111 1.90 0.00 35.78 2.71
5447 5952 2.049767 GTGCCGGTGGGGGTTATTG 61.050 63.158 1.90 0.00 35.78 1.90
5448 5953 2.357446 GTGCCGGTGGGGGTTATT 59.643 61.111 1.90 0.00 35.78 1.40
5449 5954 3.735097 GGTGCCGGTGGGGGTTAT 61.735 66.667 1.90 0.00 35.78 1.89
5470 5975 1.019805 GCTCGTGTCTTTAGGGGCAC 61.020 60.000 0.00 0.00 32.42 5.01
5471 5976 1.295423 GCTCGTGTCTTTAGGGGCA 59.705 57.895 0.00 0.00 32.42 5.36
5472 5977 0.107654 ATGCTCGTGTCTTTAGGGGC 60.108 55.000 0.00 0.00 32.75 5.80
5473 5978 2.280628 GAATGCTCGTGTCTTTAGGGG 58.719 52.381 0.00 0.00 0.00 4.79
5474 5979 2.093447 AGGAATGCTCGTGTCTTTAGGG 60.093 50.000 0.00 0.00 0.00 3.53
5475 5980 3.252974 AGGAATGCTCGTGTCTTTAGG 57.747 47.619 0.00 0.00 0.00 2.69
5476 5981 4.932200 AGAAAGGAATGCTCGTGTCTTTAG 59.068 41.667 0.00 0.00 31.22 1.85
5477 5982 4.894784 AGAAAGGAATGCTCGTGTCTTTA 58.105 39.130 0.00 0.00 31.22 1.85
5478 5983 3.744660 AGAAAGGAATGCTCGTGTCTTT 58.255 40.909 0.00 0.00 31.22 2.52
5479 5984 3.409026 AGAAAGGAATGCTCGTGTCTT 57.591 42.857 0.00 0.00 31.22 3.01
5480 5985 3.409026 AAGAAAGGAATGCTCGTGTCT 57.591 42.857 0.00 0.00 35.88 3.41
5481 5986 3.120165 GGAAAGAAAGGAATGCTCGTGTC 60.120 47.826 0.00 0.00 0.00 3.67
5482 5987 2.814336 GGAAAGAAAGGAATGCTCGTGT 59.186 45.455 0.00 0.00 0.00 4.49
5483 5988 2.813754 TGGAAAGAAAGGAATGCTCGTG 59.186 45.455 0.00 0.00 0.00 4.35
5484 5989 3.077359 CTGGAAAGAAAGGAATGCTCGT 58.923 45.455 0.00 0.00 0.00 4.18
5485 5990 3.338249 TCTGGAAAGAAAGGAATGCTCG 58.662 45.455 0.00 0.00 0.00 5.03
5486 5991 5.911378 AATCTGGAAAGAAAGGAATGCTC 57.089 39.130 0.00 0.00 0.00 4.26
5487 5992 5.186603 GGAAATCTGGAAAGAAAGGAATGCT 59.813 40.000 0.00 0.00 0.00 3.79
5488 5993 5.414360 GGAAATCTGGAAAGAAAGGAATGC 58.586 41.667 0.00 0.00 0.00 3.56
5489 5994 5.481473 TGGGAAATCTGGAAAGAAAGGAATG 59.519 40.000 0.00 0.00 0.00 2.67
5490 5995 5.654370 TGGGAAATCTGGAAAGAAAGGAAT 58.346 37.500 0.00 0.00 0.00 3.01
5491 5996 5.073437 TGGGAAATCTGGAAAGAAAGGAA 57.927 39.130 0.00 0.00 0.00 3.36
5492 5997 4.740154 TGGGAAATCTGGAAAGAAAGGA 57.260 40.909 0.00 0.00 0.00 3.36
5493 5998 5.018809 TCATGGGAAATCTGGAAAGAAAGG 58.981 41.667 0.00 0.00 0.00 3.11
5494 5999 5.948162 TCTCATGGGAAATCTGGAAAGAAAG 59.052 40.000 0.00 0.00 0.00 2.62
5495 6000 5.711976 GTCTCATGGGAAATCTGGAAAGAAA 59.288 40.000 0.00 0.00 0.00 2.52
5496 6001 5.014544 AGTCTCATGGGAAATCTGGAAAGAA 59.985 40.000 0.00 0.00 0.00 2.52
5497 6002 4.537688 AGTCTCATGGGAAATCTGGAAAGA 59.462 41.667 0.00 0.00 0.00 2.52
5498 6003 4.853007 AGTCTCATGGGAAATCTGGAAAG 58.147 43.478 0.00 0.00 0.00 2.62
5499 6004 4.934797 AGTCTCATGGGAAATCTGGAAA 57.065 40.909 0.00 0.00 0.00 3.13
5500 6005 4.141620 GCTAGTCTCATGGGAAATCTGGAA 60.142 45.833 0.00 0.00 0.00 3.53
5501 6006 3.389329 GCTAGTCTCATGGGAAATCTGGA 59.611 47.826 0.00 0.00 0.00 3.86
5502 6007 3.135348 TGCTAGTCTCATGGGAAATCTGG 59.865 47.826 0.00 0.00 0.00 3.86
5503 6008 4.412796 TGCTAGTCTCATGGGAAATCTG 57.587 45.455 0.00 0.00 0.00 2.90
5504 6009 4.657504 TGATGCTAGTCTCATGGGAAATCT 59.342 41.667 0.00 0.00 0.00 2.40
5505 6010 4.965814 TGATGCTAGTCTCATGGGAAATC 58.034 43.478 0.00 0.00 0.00 2.17
5506 6011 5.579753 ATGATGCTAGTCTCATGGGAAAT 57.420 39.130 0.00 0.00 31.04 2.17
5507 6012 6.327365 TCTTATGATGCTAGTCTCATGGGAAA 59.673 38.462 15.40 0.00 34.14 3.13
5508 6013 5.840693 TCTTATGATGCTAGTCTCATGGGAA 59.159 40.000 15.40 5.41 34.14 3.97
5509 6014 5.397360 TCTTATGATGCTAGTCTCATGGGA 58.603 41.667 15.40 0.00 34.14 4.37
5510 6015 5.479724 TCTCTTATGATGCTAGTCTCATGGG 59.520 44.000 15.40 0.00 34.14 4.00
5511 6016 6.433716 TCTCTCTTATGATGCTAGTCTCATGG 59.566 42.308 15.40 10.14 34.14 3.66
5512 6017 7.451501 TCTCTCTTATGATGCTAGTCTCATG 57.548 40.000 15.40 0.00 34.14 3.07
5513 6018 6.151648 GCTCTCTCTTATGATGCTAGTCTCAT 59.848 42.308 12.07 12.07 36.19 2.90
5514 6019 5.473162 GCTCTCTCTTATGATGCTAGTCTCA 59.527 44.000 0.00 0.00 0.00 3.27
5515 6020 5.473162 TGCTCTCTCTTATGATGCTAGTCTC 59.527 44.000 0.00 0.00 0.00 3.36
5516 6021 5.384336 TGCTCTCTCTTATGATGCTAGTCT 58.616 41.667 0.00 0.00 0.00 3.24
5517 6022 5.703978 TGCTCTCTCTTATGATGCTAGTC 57.296 43.478 0.00 0.00 0.00 2.59
5518 6023 5.106197 CGATGCTCTCTCTTATGATGCTAGT 60.106 44.000 0.00 0.00 0.00 2.57
5519 6024 5.334319 CGATGCTCTCTCTTATGATGCTAG 58.666 45.833 0.00 0.00 0.00 3.42
5520 6025 4.157472 CCGATGCTCTCTCTTATGATGCTA 59.843 45.833 0.00 0.00 0.00 3.49
5521 6026 3.056678 CCGATGCTCTCTCTTATGATGCT 60.057 47.826 0.00 0.00 0.00 3.79
5522 6027 3.252400 CCGATGCTCTCTCTTATGATGC 58.748 50.000 0.00 0.00 0.00 3.91
5523 6028 3.252400 GCCGATGCTCTCTCTTATGATG 58.748 50.000 0.00 0.00 33.53 3.07
5524 6029 2.233431 GGCCGATGCTCTCTCTTATGAT 59.767 50.000 0.00 0.00 37.74 2.45
5525 6030 1.615883 GGCCGATGCTCTCTCTTATGA 59.384 52.381 0.00 0.00 37.74 2.15
5526 6031 1.668337 CGGCCGATGCTCTCTCTTATG 60.668 57.143 24.07 0.00 37.74 1.90
5527 6032 0.600557 CGGCCGATGCTCTCTCTTAT 59.399 55.000 24.07 0.00 37.74 1.73
5528 6033 1.456196 CCGGCCGATGCTCTCTCTTA 61.456 60.000 30.73 0.00 37.74 2.10
5529 6034 2.790791 CCGGCCGATGCTCTCTCTT 61.791 63.158 30.73 0.00 37.74 2.85
5530 6035 3.222855 CCGGCCGATGCTCTCTCT 61.223 66.667 30.73 0.00 37.74 3.10
5531 6036 4.959596 GCCGGCCGATGCTCTCTC 62.960 72.222 30.73 0.00 37.74 3.20
5549 6054 1.361668 ATCCAACACATCGCAGTCGC 61.362 55.000 0.00 0.00 35.26 5.19
5550 6055 0.371301 CATCCAACACATCGCAGTCG 59.629 55.000 0.00 0.00 0.00 4.18
5551 6056 0.097674 GCATCCAACACATCGCAGTC 59.902 55.000 0.00 0.00 0.00 3.51
5552 6057 0.606130 TGCATCCAACACATCGCAGT 60.606 50.000 0.00 0.00 0.00 4.40
5553 6058 0.522626 TTGCATCCAACACATCGCAG 59.477 50.000 0.00 0.00 0.00 5.18
5554 6059 1.132834 GATTGCATCCAACACATCGCA 59.867 47.619 0.00 0.00 32.95 5.10
5555 6060 1.132834 TGATTGCATCCAACACATCGC 59.867 47.619 0.00 0.00 32.95 4.58
5556 6061 2.223409 CCTGATTGCATCCAACACATCG 60.223 50.000 0.00 0.00 32.95 3.84
5557 6062 2.756760 ACCTGATTGCATCCAACACATC 59.243 45.455 0.00 0.00 32.95 3.06
5558 6063 2.811410 ACCTGATTGCATCCAACACAT 58.189 42.857 0.00 0.00 32.95 3.21
5559 6064 2.291209 ACCTGATTGCATCCAACACA 57.709 45.000 0.00 0.00 32.95 3.72
5560 6065 2.094545 GGAACCTGATTGCATCCAACAC 60.095 50.000 0.00 0.00 32.95 3.32
5561 6066 2.170166 GGAACCTGATTGCATCCAACA 58.830 47.619 0.00 0.00 32.95 3.33
5562 6067 2.094545 GTGGAACCTGATTGCATCCAAC 60.095 50.000 4.55 0.00 41.17 3.77
5563 6068 2.170166 GTGGAACCTGATTGCATCCAA 58.830 47.619 4.55 0.00 41.17 3.53
5564 6069 1.838112 GTGGAACCTGATTGCATCCA 58.162 50.000 0.00 0.00 41.17 3.41
5577 6082 1.202604 TCGGTGAAGTCTTGGTGGAAC 60.203 52.381 0.00 0.00 0.00 3.62
5578 6083 1.124780 TCGGTGAAGTCTTGGTGGAA 58.875 50.000 0.00 0.00 0.00 3.53
5579 6084 1.124780 TTCGGTGAAGTCTTGGTGGA 58.875 50.000 0.00 0.00 0.00 4.02
5580 6085 2.185004 ATTCGGTGAAGTCTTGGTGG 57.815 50.000 0.00 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.