Multiple sequence alignment - TraesCS7A01G298300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G298300 chr7A 100.000 4229 0 0 1001 5229 403197891 403193663 0.000000e+00 7810
1 TraesCS7A01G298300 chr7A 100.000 635 0 0 1 635 403198891 403198257 0.000000e+00 1173
2 TraesCS7A01G298300 chr7A 96.585 410 12 2 1 409 448195555 448195147 0.000000e+00 678
3 TraesCS7A01G298300 chr7D 95.860 2512 64 17 1003 3501 365322435 365319951 0.000000e+00 4026
4 TraesCS7A01G298300 chr7D 94.575 1659 63 12 3499 5143 365319313 365317668 0.000000e+00 2540
5 TraesCS7A01G298300 chr7D 78.548 606 117 12 1808 2406 608479282 608478683 2.280000e-103 387
6 TraesCS7A01G298300 chr7D 77.031 640 122 23 1804 2431 564306174 564305548 1.390000e-90 344
7 TraesCS7A01G298300 chr7D 96.907 97 3 0 5133 5229 365317632 365317536 4.190000e-36 163
8 TraesCS7A01G298300 chr7B 94.429 1759 62 15 3496 5229 321339826 321341573 0.000000e+00 2673
9 TraesCS7A01G298300 chr7B 93.715 1448 57 15 2059 3501 321337773 321339191 0.000000e+00 2139
10 TraesCS7A01G298300 chr7B 94.516 930 46 4 1003 1927 321336849 321337778 0.000000e+00 1430
11 TraesCS7A01G298300 chr7B 78.405 602 111 18 1815 2406 246509901 246510493 1.780000e-99 374
12 TraesCS7A01G298300 chr7B 74.762 630 129 25 1810 2426 41315047 41314435 6.720000e-64 255
13 TraesCS7A01G298300 chr7B 81.185 287 50 3 1808 2092 613188861 613189145 1.460000e-55 228
14 TraesCS7A01G298300 chr4A 96.837 411 10 2 1 409 627742478 627742887 0.000000e+00 684
15 TraesCS7A01G298300 chr4A 96.610 413 10 3 1 410 627668222 627667811 0.000000e+00 682
16 TraesCS7A01G298300 chr4A 96.126 413 11 4 1 410 627727534 627727124 0.000000e+00 669
17 TraesCS7A01G298300 chr3A 96.602 412 12 2 1 410 723292107 723292518 0.000000e+00 682
18 TraesCS7A01G298300 chr6A 95.181 415 15 5 1 413 143010743 143010332 0.000000e+00 651
19 TraesCS7A01G298300 chr2A 85.714 413 42 9 1 409 631956969 631957368 2.250000e-113 420
20 TraesCS7A01G298300 chr3D 85.266 414 34 11 1 408 609187268 609187660 8.160000e-108 401
21 TraesCS7A01G298300 chr4B 78.303 613 106 25 1808 2406 95444570 95445169 2.300000e-98 370
22 TraesCS7A01G298300 chr4B 77.143 630 122 17 1808 2431 624151415 624152028 3.880000e-91 346
23 TraesCS7A01G298300 chr4B 75.965 570 119 17 1869 2431 668409940 668409382 1.430000e-70 278
24 TraesCS7A01G298300 chr2B 76.630 629 125 17 1809 2431 584726314 584726926 1.400000e-85 327
25 TraesCS7A01G298300 chr2B 75.633 632 126 23 1811 2431 712075702 712075088 6.630000e-74 289
26 TraesCS7A01G298300 chr2B 75.966 595 120 17 1810 2396 13039818 13039239 8.570000e-73 285
27 TraesCS7A01G298300 chr3B 76.821 604 115 23 1811 2407 556033020 556032435 3.040000e-82 316
28 TraesCS7A01G298300 chr3B 86.294 197 23 3 214 409 117951444 117951251 1.480000e-50 211
29 TraesCS7A01G298300 chr4D 75.314 636 125 25 1809 2431 459553223 459552607 5.160000e-70 276
30 TraesCS7A01G298300 chr1B 75.277 631 129 22 1812 2431 572273948 572273334 5.160000e-70 276
31 TraesCS7A01G298300 chr6B 79.612 309 54 8 1809 2113 22587693 22587996 4.100000e-51 213


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G298300 chr7A 403193663 403198891 5228 True 4491.500000 7810 100.000000 1 5229 2 chr7A.!!$R2 5228
1 TraesCS7A01G298300 chr7D 365317536 365322435 4899 True 2243.000000 4026 95.780667 1003 5229 3 chr7D.!!$R3 4226
2 TraesCS7A01G298300 chr7D 608478683 608479282 599 True 387.000000 387 78.548000 1808 2406 1 chr7D.!!$R2 598
3 TraesCS7A01G298300 chr7D 564305548 564306174 626 True 344.000000 344 77.031000 1804 2431 1 chr7D.!!$R1 627
4 TraesCS7A01G298300 chr7B 321336849 321341573 4724 False 2080.666667 2673 94.220000 1003 5229 3 chr7B.!!$F3 4226
5 TraesCS7A01G298300 chr7B 246509901 246510493 592 False 374.000000 374 78.405000 1815 2406 1 chr7B.!!$F1 591
6 TraesCS7A01G298300 chr7B 41314435 41315047 612 True 255.000000 255 74.762000 1810 2426 1 chr7B.!!$R1 616
7 TraesCS7A01G298300 chr4B 95444570 95445169 599 False 370.000000 370 78.303000 1808 2406 1 chr4B.!!$F1 598
8 TraesCS7A01G298300 chr4B 624151415 624152028 613 False 346.000000 346 77.143000 1808 2431 1 chr4B.!!$F2 623
9 TraesCS7A01G298300 chr4B 668409382 668409940 558 True 278.000000 278 75.965000 1869 2431 1 chr4B.!!$R1 562
10 TraesCS7A01G298300 chr2B 584726314 584726926 612 False 327.000000 327 76.630000 1809 2431 1 chr2B.!!$F1 622
11 TraesCS7A01G298300 chr2B 712075088 712075702 614 True 289.000000 289 75.633000 1811 2431 1 chr2B.!!$R2 620
12 TraesCS7A01G298300 chr2B 13039239 13039818 579 True 285.000000 285 75.966000 1810 2396 1 chr2B.!!$R1 586
13 TraesCS7A01G298300 chr3B 556032435 556033020 585 True 316.000000 316 76.821000 1811 2407 1 chr3B.!!$R2 596
14 TraesCS7A01G298300 chr4D 459552607 459553223 616 True 276.000000 276 75.314000 1809 2431 1 chr4D.!!$R1 622
15 TraesCS7A01G298300 chr1B 572273334 572273948 614 True 276.000000 276 75.277000 1812 2431 1 chr1B.!!$R1 619

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
330 331 0.032815 AAAAATTGAACGTGGGCCGG 59.967 50.000 0.00 0.00 42.24 6.13 F
440 441 0.107214 CCTTGTACGATGGGGCATGT 60.107 55.000 0.00 0.00 0.00 3.21 F
543 544 0.180406 AAACGGGCTACTATGGGCTG 59.820 55.000 0.00 0.00 40.75 4.85 F
634 635 0.250234 CTCGTCTCCATTTGCTCCCA 59.750 55.000 0.00 0.00 0.00 4.37 F
1323 1324 0.317603 GCGATCGGTATAGCGTGTGT 60.318 55.000 22.44 8.71 0.00 3.72 F
1920 1928 0.739462 CCGTTACAATCCGCTGAGCA 60.739 55.000 4.88 0.00 0.00 4.26 F
2013 2023 0.842030 TCACTTCTCCCCTGGCACAT 60.842 55.000 0.00 0.00 38.20 3.21 F
2201 2215 1.065126 GGAGAAATGTGCTAGGCTGGT 60.065 52.381 0.00 0.00 0.00 4.00 F
2622 2639 1.136252 CCGCGTCTCAACAATGTCTTG 60.136 52.381 4.92 0.00 38.39 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2201 2215 1.065701 GTTCGGCGATCTTCTCTAGCA 59.934 52.381 11.76 0.0 0.00 3.49 R
2350 2366 1.001269 TGAGAGATGTCGGGGTCGT 60.001 57.895 0.00 0.0 37.69 4.34 R
2494 2511 2.440247 GGGGGCATCGTTCTTGGG 60.440 66.667 0.00 0.0 0.00 4.12 R
2616 2633 2.872245 CGTTGCCTTCTTCTTCAAGACA 59.128 45.455 0.00 0.0 38.44 3.41 R
2746 2763 1.069668 CTCATCTGATGGGTCGATGCA 59.930 52.381 17.06 0.0 36.36 3.96 R
3520 4188 0.763652 ACTGCTCTATCATGGCCTGG 59.236 55.000 3.32 0.0 0.00 4.45 R
3809 4479 0.892755 AGTGTGGCCAAAGCATGATG 59.107 50.000 7.24 0.0 42.56 3.07 R
3810 4480 0.892755 CAGTGTGGCCAAAGCATGAT 59.107 50.000 7.24 0.0 42.56 2.45 R
4468 5145 0.539438 CACAGGCAGCAAGGGGTTAA 60.539 55.000 0.00 0.0 0.00 2.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 4.400036 AAGGTTCACGAATTCTAAACGC 57.600 40.909 3.52 0.96 0.00 4.84
72 73 3.395639 AGGTTCACGAATTCTAAACGCA 58.604 40.909 3.52 0.00 0.00 5.24
73 74 3.810941 AGGTTCACGAATTCTAAACGCAA 59.189 39.130 3.52 0.00 0.00 4.85
74 75 4.273969 AGGTTCACGAATTCTAAACGCAAA 59.726 37.500 3.52 0.00 0.00 3.68
75 76 4.971220 GGTTCACGAATTCTAAACGCAAAA 59.029 37.500 3.52 0.00 0.00 2.44
76 77 5.627780 GGTTCACGAATTCTAAACGCAAAAT 59.372 36.000 3.52 0.00 0.00 1.82
77 78 6.183359 GGTTCACGAATTCTAAACGCAAAATC 60.183 38.462 3.52 0.00 0.00 2.17
78 79 5.991568 TCACGAATTCTAAACGCAAAATCA 58.008 33.333 3.52 0.00 0.00 2.57
79 80 6.607689 TCACGAATTCTAAACGCAAAATCAT 58.392 32.000 3.52 0.00 0.00 2.45
80 81 6.522855 TCACGAATTCTAAACGCAAAATCATG 59.477 34.615 3.52 0.00 0.00 3.07
81 82 6.305399 CACGAATTCTAAACGCAAAATCATGT 59.695 34.615 3.52 0.00 0.00 3.21
82 83 7.480229 CACGAATTCTAAACGCAAAATCATGTA 59.520 33.333 3.52 0.00 0.00 2.29
83 84 8.181573 ACGAATTCTAAACGCAAAATCATGTAT 58.818 29.630 3.52 0.00 0.00 2.29
84 85 9.009327 CGAATTCTAAACGCAAAATCATGTATT 57.991 29.630 3.52 0.00 0.00 1.89
160 161 2.570442 GAACAAAACCGTTCCAGCAA 57.430 45.000 0.00 0.00 39.52 3.91
161 162 2.459934 GAACAAAACCGTTCCAGCAAG 58.540 47.619 0.00 0.00 39.52 4.01
162 163 1.757682 ACAAAACCGTTCCAGCAAGA 58.242 45.000 0.00 0.00 0.00 3.02
163 164 2.096248 ACAAAACCGTTCCAGCAAGAA 58.904 42.857 0.00 0.00 0.00 2.52
164 165 2.494073 ACAAAACCGTTCCAGCAAGAAA 59.506 40.909 0.00 0.00 0.00 2.52
165 166 3.056465 ACAAAACCGTTCCAGCAAGAAAA 60.056 39.130 0.00 0.00 0.00 2.29
166 167 3.436700 AAACCGTTCCAGCAAGAAAAG 57.563 42.857 0.00 0.00 0.00 2.27
167 168 2.341846 ACCGTTCCAGCAAGAAAAGA 57.658 45.000 0.00 0.00 0.00 2.52
168 169 2.222027 ACCGTTCCAGCAAGAAAAGAG 58.778 47.619 0.00 0.00 0.00 2.85
169 170 2.158813 ACCGTTCCAGCAAGAAAAGAGA 60.159 45.455 0.00 0.00 0.00 3.10
170 171 2.878406 CCGTTCCAGCAAGAAAAGAGAA 59.122 45.455 0.00 0.00 0.00 2.87
171 172 3.304057 CCGTTCCAGCAAGAAAAGAGAAC 60.304 47.826 0.00 0.00 0.00 3.01
172 173 3.312421 CGTTCCAGCAAGAAAAGAGAACA 59.688 43.478 0.00 0.00 33.44 3.18
173 174 4.201910 CGTTCCAGCAAGAAAAGAGAACAA 60.202 41.667 0.00 0.00 33.44 2.83
174 175 5.650543 GTTCCAGCAAGAAAAGAGAACAAA 58.349 37.500 0.00 0.00 33.91 2.83
175 176 5.913137 TCCAGCAAGAAAAGAGAACAAAA 57.087 34.783 0.00 0.00 0.00 2.44
176 177 5.894807 TCCAGCAAGAAAAGAGAACAAAAG 58.105 37.500 0.00 0.00 0.00 2.27
177 178 5.652014 TCCAGCAAGAAAAGAGAACAAAAGA 59.348 36.000 0.00 0.00 0.00 2.52
178 179 6.152661 TCCAGCAAGAAAAGAGAACAAAAGAA 59.847 34.615 0.00 0.00 0.00 2.52
179 180 6.474751 CCAGCAAGAAAAGAGAACAAAAGAAG 59.525 38.462 0.00 0.00 0.00 2.85
180 181 7.031975 CAGCAAGAAAAGAGAACAAAAGAAGT 58.968 34.615 0.00 0.00 0.00 3.01
181 182 8.184192 CAGCAAGAAAAGAGAACAAAAGAAGTA 58.816 33.333 0.00 0.00 0.00 2.24
182 183 8.739972 AGCAAGAAAAGAGAACAAAAGAAGTAA 58.260 29.630 0.00 0.00 0.00 2.24
183 184 9.353999 GCAAGAAAAGAGAACAAAAGAAGTAAA 57.646 29.630 0.00 0.00 0.00 2.01
188 189 9.929180 AAAAGAGAACAAAAGAAGTAAAAAGCT 57.071 25.926 0.00 0.00 0.00 3.74
209 210 8.664211 AAGCTATAACTAGACATGTAAAAGGC 57.336 34.615 0.00 0.00 0.00 4.35
210 211 8.024145 AGCTATAACTAGACATGTAAAAGGCT 57.976 34.615 0.00 0.00 0.00 4.58
211 212 7.928706 AGCTATAACTAGACATGTAAAAGGCTG 59.071 37.037 0.00 0.00 0.00 4.85
212 213 7.171678 GCTATAACTAGACATGTAAAAGGCTGG 59.828 40.741 0.00 0.00 0.00 4.85
213 214 4.910458 ACTAGACATGTAAAAGGCTGGT 57.090 40.909 0.00 0.00 0.00 4.00
214 215 6.368779 AACTAGACATGTAAAAGGCTGGTA 57.631 37.500 0.00 0.00 0.00 3.25
215 216 5.978814 ACTAGACATGTAAAAGGCTGGTAG 58.021 41.667 0.00 0.00 0.00 3.18
216 217 4.910458 AGACATGTAAAAGGCTGGTAGT 57.090 40.909 0.00 0.00 0.00 2.73
217 218 5.242795 AGACATGTAAAAGGCTGGTAGTT 57.757 39.130 0.00 0.00 0.00 2.24
218 219 5.003804 AGACATGTAAAAGGCTGGTAGTTG 58.996 41.667 0.00 0.00 0.00 3.16
219 220 4.079253 ACATGTAAAAGGCTGGTAGTTGG 58.921 43.478 0.00 0.00 0.00 3.77
220 221 3.868619 TGTAAAAGGCTGGTAGTTGGT 57.131 42.857 0.00 0.00 0.00 3.67
221 222 4.173290 TGTAAAAGGCTGGTAGTTGGTT 57.827 40.909 0.00 0.00 0.00 3.67
222 223 3.886505 TGTAAAAGGCTGGTAGTTGGTTG 59.113 43.478 0.00 0.00 0.00 3.77
223 224 1.995376 AAAGGCTGGTAGTTGGTTGG 58.005 50.000 0.00 0.00 0.00 3.77
224 225 0.850784 AAGGCTGGTAGTTGGTTGGT 59.149 50.000 0.00 0.00 0.00 3.67
225 226 0.850784 AGGCTGGTAGTTGGTTGGTT 59.149 50.000 0.00 0.00 0.00 3.67
226 227 2.059490 AGGCTGGTAGTTGGTTGGTTA 58.941 47.619 0.00 0.00 0.00 2.85
227 228 2.156917 GGCTGGTAGTTGGTTGGTTAC 58.843 52.381 0.00 0.00 0.00 2.50
228 229 1.802365 GCTGGTAGTTGGTTGGTTACG 59.198 52.381 0.00 0.00 0.00 3.18
229 230 2.419667 CTGGTAGTTGGTTGGTTACGG 58.580 52.381 0.00 0.00 0.00 4.02
230 231 1.767681 TGGTAGTTGGTTGGTTACGGT 59.232 47.619 0.00 0.00 0.00 4.83
231 232 2.968574 TGGTAGTTGGTTGGTTACGGTA 59.031 45.455 0.00 0.00 0.00 4.02
232 233 3.006752 TGGTAGTTGGTTGGTTACGGTAG 59.993 47.826 0.00 0.00 0.00 3.18
233 234 2.174363 AGTTGGTTGGTTACGGTAGC 57.826 50.000 0.00 0.00 0.00 3.58
234 235 0.792031 GTTGGTTGGTTACGGTAGCG 59.208 55.000 13.69 13.69 0.00 4.26
235 236 0.678395 TTGGTTGGTTACGGTAGCGA 59.322 50.000 22.88 1.53 0.00 4.93
236 237 0.038343 TGGTTGGTTACGGTAGCGAC 60.038 55.000 22.88 9.55 0.00 5.19
237 238 0.737367 GGTTGGTTACGGTAGCGACC 60.737 60.000 22.88 18.90 41.46 4.79
246 247 3.820595 GGTAGCGACCGTTTAACCT 57.179 52.632 0.00 0.00 35.52 3.50
247 248 1.353076 GGTAGCGACCGTTTAACCTG 58.647 55.000 0.00 0.00 35.52 4.00
248 249 1.353076 GTAGCGACCGTTTAACCTGG 58.647 55.000 0.00 0.00 0.00 4.45
249 250 0.968405 TAGCGACCGTTTAACCTGGT 59.032 50.000 0.00 0.00 39.12 4.00
250 251 0.601841 AGCGACCGTTTAACCTGGTG 60.602 55.000 0.00 0.00 35.75 4.17
251 252 0.600782 GCGACCGTTTAACCTGGTGA 60.601 55.000 0.00 0.00 35.75 4.02
252 253 1.942586 GCGACCGTTTAACCTGGTGAT 60.943 52.381 0.00 0.00 35.75 3.06
253 254 1.997606 CGACCGTTTAACCTGGTGATC 59.002 52.381 0.00 0.00 35.75 2.92
254 255 2.353323 GACCGTTTAACCTGGTGATCC 58.647 52.381 0.00 0.00 35.75 3.36
255 256 1.982958 ACCGTTTAACCTGGTGATCCT 59.017 47.619 0.00 0.00 33.91 3.24
256 257 2.374170 ACCGTTTAACCTGGTGATCCTT 59.626 45.455 0.00 0.00 33.91 3.36
257 258 3.181437 ACCGTTTAACCTGGTGATCCTTT 60.181 43.478 0.00 0.00 33.91 3.11
258 259 3.190535 CCGTTTAACCTGGTGATCCTTTG 59.809 47.826 0.00 0.00 34.23 2.77
259 260 3.818773 CGTTTAACCTGGTGATCCTTTGT 59.181 43.478 0.00 0.00 34.23 2.83
260 261 4.277423 CGTTTAACCTGGTGATCCTTTGTT 59.723 41.667 0.00 0.00 34.23 2.83
261 262 5.562113 CGTTTAACCTGGTGATCCTTTGTTC 60.562 44.000 0.00 0.00 34.23 3.18
262 263 2.185004 ACCTGGTGATCCTTTGTTCG 57.815 50.000 0.00 0.00 34.23 3.95
263 264 1.697432 ACCTGGTGATCCTTTGTTCGA 59.303 47.619 0.00 0.00 34.23 3.71
264 265 2.289694 ACCTGGTGATCCTTTGTTCGAG 60.290 50.000 0.00 0.00 34.23 4.04
265 266 1.734465 CTGGTGATCCTTTGTTCGAGC 59.266 52.381 0.00 0.00 34.23 5.03
266 267 1.087501 GGTGATCCTTTGTTCGAGCC 58.912 55.000 0.00 0.00 0.00 4.70
267 268 1.610624 GGTGATCCTTTGTTCGAGCCA 60.611 52.381 0.00 0.00 0.00 4.75
268 269 1.464997 GTGATCCTTTGTTCGAGCCAC 59.535 52.381 0.00 0.00 0.00 5.01
269 270 0.721718 GATCCTTTGTTCGAGCCACG 59.278 55.000 0.00 0.00 44.09 4.94
278 279 2.259281 TCGAGCCACGACATGTACA 58.741 52.632 0.00 0.00 46.45 2.90
279 280 0.815095 TCGAGCCACGACATGTACAT 59.185 50.000 1.41 1.41 46.45 2.29
280 281 0.923403 CGAGCCACGACATGTACATG 59.077 55.000 29.97 29.97 45.77 3.21
329 330 3.579066 AAAAATTGAACGTGGGCCG 57.421 47.368 0.00 0.00 44.03 6.13
330 331 0.032815 AAAAATTGAACGTGGGCCGG 59.967 50.000 0.00 0.00 42.24 6.13
331 332 2.428960 AAAATTGAACGTGGGCCGGC 62.429 55.000 21.18 21.18 42.24 6.13
370 371 2.585247 GCGCCCTGTACCGCTAAG 60.585 66.667 0.00 0.00 46.14 2.18
371 372 2.585247 CGCCCTGTACCGCTAAGC 60.585 66.667 0.00 0.00 0.00 3.09
372 373 2.203029 GCCCTGTACCGCTAAGCC 60.203 66.667 0.00 0.00 0.00 4.35
373 374 2.732619 GCCCTGTACCGCTAAGCCT 61.733 63.158 0.00 0.00 0.00 4.58
374 375 1.397390 GCCCTGTACCGCTAAGCCTA 61.397 60.000 0.00 0.00 0.00 3.93
375 376 1.339097 CCCTGTACCGCTAAGCCTAT 58.661 55.000 0.00 0.00 0.00 2.57
376 377 2.522185 CCCTGTACCGCTAAGCCTATA 58.478 52.381 0.00 0.00 0.00 1.31
377 378 2.895404 CCCTGTACCGCTAAGCCTATAA 59.105 50.000 0.00 0.00 0.00 0.98
378 379 3.305881 CCCTGTACCGCTAAGCCTATAAC 60.306 52.174 0.00 0.00 0.00 1.89
379 380 3.562505 CTGTACCGCTAAGCCTATAACG 58.437 50.000 0.00 0.00 0.00 3.18
380 381 2.294233 TGTACCGCTAAGCCTATAACGG 59.706 50.000 0.00 0.00 45.86 4.44
381 382 0.677842 ACCGCTAAGCCTATAACGGG 59.322 55.000 4.13 0.00 44.73 5.28
404 405 2.512974 CGGGCGCCGTTTAGGAAT 60.513 61.111 22.54 0.00 45.00 3.01
405 406 2.110352 CGGGCGCCGTTTAGGAATT 61.110 57.895 22.54 0.00 45.00 2.17
406 407 1.431845 GGGCGCCGTTTAGGAATTG 59.568 57.895 22.54 0.00 45.00 2.32
407 408 1.226575 GGCGCCGTTTAGGAATTGC 60.227 57.895 12.58 0.00 45.00 3.56
408 409 1.226575 GCGCCGTTTAGGAATTGCC 60.227 57.895 0.00 0.00 45.00 4.52
409 410 1.431845 CGCCGTTTAGGAATTGCCC 59.568 57.895 0.00 0.00 45.00 5.36
410 411 1.431845 GCCGTTTAGGAATTGCCCG 59.568 57.895 0.00 0.00 45.00 6.13
411 412 1.310216 GCCGTTTAGGAATTGCCCGT 61.310 55.000 0.00 0.00 45.00 5.28
412 413 0.450184 CCGTTTAGGAATTGCCCGTG 59.550 55.000 0.00 0.00 45.00 4.94
413 414 0.450184 CGTTTAGGAATTGCCCGTGG 59.550 55.000 0.00 0.00 37.37 4.94
424 425 4.096003 CCCGTGGCATCGTCCCTT 62.096 66.667 0.00 0.00 0.00 3.95
425 426 2.819595 CCGTGGCATCGTCCCTTG 60.820 66.667 0.00 0.00 0.00 3.61
426 427 2.047274 CGTGGCATCGTCCCTTGT 60.047 61.111 0.00 0.00 0.00 3.16
427 428 1.216977 CGTGGCATCGTCCCTTGTA 59.783 57.895 0.00 0.00 0.00 2.41
428 429 1.082117 CGTGGCATCGTCCCTTGTAC 61.082 60.000 0.00 0.00 0.00 2.90
429 430 1.082117 GTGGCATCGTCCCTTGTACG 61.082 60.000 0.00 0.00 41.64 3.67
434 435 2.195389 TCGTCCCTTGTACGATGGG 58.805 57.895 10.37 10.37 43.90 4.00
435 436 1.143183 CGTCCCTTGTACGATGGGG 59.857 63.158 14.93 8.95 42.90 4.96
436 437 1.153229 GTCCCTTGTACGATGGGGC 60.153 63.158 14.93 11.00 39.23 5.80
437 438 1.613928 TCCCTTGTACGATGGGGCA 60.614 57.895 14.93 0.00 39.23 5.36
438 439 0.986019 TCCCTTGTACGATGGGGCAT 60.986 55.000 14.93 0.00 39.23 4.40
439 440 0.819259 CCCTTGTACGATGGGGCATG 60.819 60.000 9.11 0.00 35.66 4.06
440 441 0.107214 CCTTGTACGATGGGGCATGT 60.107 55.000 0.00 0.00 0.00 3.21
441 442 1.140052 CCTTGTACGATGGGGCATGTA 59.860 52.381 0.00 0.00 0.00 2.29
442 443 2.224523 CCTTGTACGATGGGGCATGTAT 60.225 50.000 0.00 0.00 0.00 2.29
443 444 3.476552 CTTGTACGATGGGGCATGTATT 58.523 45.455 0.00 0.00 0.00 1.89
444 445 3.569194 TGTACGATGGGGCATGTATTT 57.431 42.857 0.00 0.00 0.00 1.40
445 446 3.210227 TGTACGATGGGGCATGTATTTG 58.790 45.455 0.00 0.00 0.00 2.32
446 447 1.032014 ACGATGGGGCATGTATTTGC 58.968 50.000 0.00 0.00 42.01 3.68
452 453 2.417097 GCATGTATTTGCCGGGGC 59.583 61.111 2.18 1.86 42.35 5.80
462 463 2.203351 GCCGGGGCAAATAGGGAG 60.203 66.667 2.18 0.00 41.49 4.30
463 464 2.752807 GCCGGGGCAAATAGGGAGA 61.753 63.158 2.18 0.00 41.49 3.71
464 465 1.148498 CCGGGGCAAATAGGGAGAC 59.852 63.158 0.00 0.00 0.00 3.36
477 478 2.593128 GGAGACCCGTTAAGGAGCT 58.407 57.895 0.00 0.00 45.00 4.09
478 479 0.460722 GGAGACCCGTTAAGGAGCTC 59.539 60.000 4.71 4.71 45.00 4.09
479 480 0.460722 GAGACCCGTTAAGGAGCTCC 59.539 60.000 26.22 26.22 45.00 4.70
480 481 0.976590 AGACCCGTTAAGGAGCTCCC 60.977 60.000 29.54 12.87 45.00 4.30
481 482 2.294132 GACCCGTTAAGGAGCTCCCG 62.294 65.000 29.54 23.51 45.00 5.14
482 483 2.356780 CCCGTTAAGGAGCTCCCGT 61.357 63.158 29.54 19.69 45.00 5.28
483 484 1.039233 CCCGTTAAGGAGCTCCCGTA 61.039 60.000 29.54 18.60 45.00 4.02
484 485 0.384669 CCGTTAAGGAGCTCCCGTAG 59.615 60.000 29.54 16.28 45.00 3.51
485 486 1.386533 CGTTAAGGAGCTCCCGTAGA 58.613 55.000 29.54 8.43 40.87 2.59
486 487 1.747355 CGTTAAGGAGCTCCCGTAGAA 59.253 52.381 29.54 13.08 40.87 2.10
487 488 2.223525 CGTTAAGGAGCTCCCGTAGAAG 60.224 54.545 29.54 11.13 40.87 2.85
488 489 2.068834 TAAGGAGCTCCCGTAGAAGG 57.931 55.000 29.54 0.00 40.87 3.46
519 520 4.735132 CGCCACGACACGACCCAT 62.735 66.667 0.00 0.00 0.00 4.00
520 521 2.358247 GCCACGACACGACCCATT 60.358 61.111 0.00 0.00 0.00 3.16
521 522 2.388232 GCCACGACACGACCCATTC 61.388 63.158 0.00 0.00 0.00 2.67
522 523 1.005512 CCACGACACGACCCATTCA 60.006 57.895 0.00 0.00 0.00 2.57
523 524 0.391130 CCACGACACGACCCATTCAT 60.391 55.000 0.00 0.00 0.00 2.57
524 525 1.134936 CCACGACACGACCCATTCATA 60.135 52.381 0.00 0.00 0.00 2.15
525 526 2.612604 CACGACACGACCCATTCATAA 58.387 47.619 0.00 0.00 0.00 1.90
526 527 2.997303 CACGACACGACCCATTCATAAA 59.003 45.455 0.00 0.00 0.00 1.40
527 528 2.997986 ACGACACGACCCATTCATAAAC 59.002 45.455 0.00 0.00 0.00 2.01
528 529 2.028763 CGACACGACCCATTCATAAACG 59.971 50.000 0.00 0.00 0.00 3.60
529 530 2.350498 GACACGACCCATTCATAAACGG 59.650 50.000 0.00 0.00 0.00 4.44
530 531 1.668751 CACGACCCATTCATAAACGGG 59.331 52.381 0.00 0.00 44.88 5.28
531 532 0.661020 CGACCCATTCATAAACGGGC 59.339 55.000 0.00 0.00 42.97 6.13
532 533 1.745827 CGACCCATTCATAAACGGGCT 60.746 52.381 0.00 0.00 42.97 5.19
533 534 2.484065 CGACCCATTCATAAACGGGCTA 60.484 50.000 0.00 0.00 42.97 3.93
534 535 2.876550 GACCCATTCATAAACGGGCTAC 59.123 50.000 0.00 0.00 42.97 3.58
535 536 2.508300 ACCCATTCATAAACGGGCTACT 59.492 45.455 0.00 0.00 42.97 2.57
536 537 3.712733 ACCCATTCATAAACGGGCTACTA 59.287 43.478 0.00 0.00 42.97 1.82
537 538 4.349930 ACCCATTCATAAACGGGCTACTAT 59.650 41.667 0.00 0.00 42.97 2.12
538 539 4.695455 CCCATTCATAAACGGGCTACTATG 59.305 45.833 0.00 0.00 0.00 2.23
539 540 4.695455 CCATTCATAAACGGGCTACTATGG 59.305 45.833 0.00 0.00 0.00 2.74
540 541 4.345859 TTCATAAACGGGCTACTATGGG 57.654 45.455 0.00 0.00 0.00 4.00
541 542 2.038033 TCATAAACGGGCTACTATGGGC 59.962 50.000 0.00 0.00 0.00 5.36
542 543 1.797320 TAAACGGGCTACTATGGGCT 58.203 50.000 0.00 0.00 0.00 5.19
543 544 0.180406 AAACGGGCTACTATGGGCTG 59.820 55.000 0.00 0.00 40.75 4.85
544 545 1.382695 ACGGGCTACTATGGGCTGT 60.383 57.895 0.00 0.00 42.68 4.40
545 546 1.069765 CGGGCTACTATGGGCTGTG 59.930 63.158 0.00 0.00 0.00 3.66
546 547 1.227973 GGGCTACTATGGGCTGTGC 60.228 63.158 0.00 0.00 0.00 4.57
556 557 4.016706 GGCTGTGCCGTACCAGGT 62.017 66.667 0.00 0.00 39.62 4.00
557 558 2.652095 GGCTGTGCCGTACCAGGTA 61.652 63.158 0.00 0.00 39.62 3.08
558 559 1.447314 GCTGTGCCGTACCAGGTAC 60.447 63.158 18.85 18.85 45.42 3.34
568 569 3.893326 GTACCAGGTACGTTAATGGGT 57.107 47.619 14.25 9.72 37.13 4.51
569 570 3.785486 GTACCAGGTACGTTAATGGGTC 58.215 50.000 14.25 5.87 37.13 4.46
570 571 2.259012 ACCAGGTACGTTAATGGGTCA 58.741 47.619 14.70 0.00 37.13 4.02
571 572 2.235402 ACCAGGTACGTTAATGGGTCAG 59.765 50.000 14.70 0.00 37.13 3.51
572 573 2.277084 CAGGTACGTTAATGGGTCAGC 58.723 52.381 0.00 0.00 0.00 4.26
573 574 1.208776 AGGTACGTTAATGGGTCAGCC 59.791 52.381 0.00 0.00 0.00 4.85
591 592 4.320456 CGAGCTATGCCGGCCCAT 62.320 66.667 26.77 14.81 0.00 4.00
592 593 2.113986 GAGCTATGCCGGCCCATT 59.886 61.111 26.77 8.84 0.00 3.16
593 594 1.529244 GAGCTATGCCGGCCCATTT 60.529 57.895 26.77 6.79 0.00 2.32
594 595 1.799258 GAGCTATGCCGGCCCATTTG 61.799 60.000 26.77 9.24 0.00 2.32
595 596 2.859981 GCTATGCCGGCCCATTTGG 61.860 63.158 26.77 8.08 37.09 3.28
604 605 4.023137 CCCATTTGGCCAGGTCAG 57.977 61.111 5.11 0.00 0.00 3.51
605 606 1.683365 CCCATTTGGCCAGGTCAGG 60.683 63.158 5.11 5.15 0.00 3.86
606 607 1.683365 CCATTTGGCCAGGTCAGGG 60.683 63.158 5.11 0.00 0.00 4.45
614 615 3.437642 CCAGGTCAGGGCAAAAGAA 57.562 52.632 0.00 0.00 0.00 2.52
615 616 0.961753 CCAGGTCAGGGCAAAAGAAC 59.038 55.000 0.00 0.00 0.00 3.01
616 617 1.479389 CCAGGTCAGGGCAAAAGAACT 60.479 52.381 0.00 0.00 0.00 3.01
617 618 1.882623 CAGGTCAGGGCAAAAGAACTC 59.117 52.381 0.00 0.00 0.00 3.01
618 619 0.875059 GGTCAGGGCAAAAGAACTCG 59.125 55.000 0.00 0.00 0.00 4.18
619 620 1.594331 GTCAGGGCAAAAGAACTCGT 58.406 50.000 0.00 0.00 0.00 4.18
620 621 1.531578 GTCAGGGCAAAAGAACTCGTC 59.468 52.381 0.00 0.00 0.00 4.20
621 622 1.416401 TCAGGGCAAAAGAACTCGTCT 59.584 47.619 0.00 0.00 38.69 4.18
622 623 1.801178 CAGGGCAAAAGAACTCGTCTC 59.199 52.381 0.00 0.00 34.56 3.36
623 624 1.157585 GGGCAAAAGAACTCGTCTCC 58.842 55.000 0.00 0.00 34.56 3.71
624 625 1.542547 GGGCAAAAGAACTCGTCTCCA 60.543 52.381 0.00 0.00 34.56 3.86
625 626 2.427506 GGCAAAAGAACTCGTCTCCAT 58.572 47.619 0.00 0.00 34.56 3.41
626 627 2.814336 GGCAAAAGAACTCGTCTCCATT 59.186 45.455 0.00 0.00 34.56 3.16
627 628 3.253432 GGCAAAAGAACTCGTCTCCATTT 59.747 43.478 0.00 0.00 34.56 2.32
628 629 4.222114 GCAAAAGAACTCGTCTCCATTTG 58.778 43.478 0.00 0.00 35.80 2.32
629 630 4.222114 CAAAAGAACTCGTCTCCATTTGC 58.778 43.478 0.00 0.00 34.56 3.68
630 631 3.409026 AAGAACTCGTCTCCATTTGCT 57.591 42.857 0.00 0.00 34.56 3.91
631 632 2.966050 AGAACTCGTCTCCATTTGCTC 58.034 47.619 0.00 0.00 0.00 4.26
632 633 2.003301 GAACTCGTCTCCATTTGCTCC 58.997 52.381 0.00 0.00 0.00 4.70
633 634 0.250513 ACTCGTCTCCATTTGCTCCC 59.749 55.000 0.00 0.00 0.00 4.30
634 635 0.250234 CTCGTCTCCATTTGCTCCCA 59.750 55.000 0.00 0.00 0.00 4.37
1323 1324 0.317603 GCGATCGGTATAGCGTGTGT 60.318 55.000 22.44 8.71 0.00 3.72
1478 1482 7.014711 TGTTGGTAGATCTGGATGTCTTAGATC 59.985 40.741 5.18 14.38 44.45 2.75
1656 1661 4.083643 GGAACGGTGATGCATCTATGAATG 60.084 45.833 26.32 11.89 0.00 2.67
1668 1673 7.019774 GCATCTATGAATGCTTACAACTGAA 57.980 36.000 6.83 0.00 46.81 3.02
1732 1737 3.455910 TGACCCATCCTTCAGTTATGAGG 59.544 47.826 0.00 0.00 36.61 3.86
1920 1928 0.739462 CCGTTACAATCCGCTGAGCA 60.739 55.000 4.88 0.00 0.00 4.26
2013 2023 0.842030 TCACTTCTCCCCTGGCACAT 60.842 55.000 0.00 0.00 38.20 3.21
2019 2029 3.274281 TCTCCCCTGGCACATGATATA 57.726 47.619 0.00 0.00 38.20 0.86
2201 2215 1.065126 GGAGAAATGTGCTAGGCTGGT 60.065 52.381 0.00 0.00 0.00 4.00
2462 2479 1.306997 ACGACCCCACCATCCTCAT 60.307 57.895 0.00 0.00 0.00 2.90
2494 2511 4.394712 CTCCAGCCGGTCACCACC 62.395 72.222 1.90 0.00 39.69 4.61
2616 2633 1.568612 CTGCACCGCGTCTCAACAAT 61.569 55.000 4.92 0.00 0.00 2.71
2622 2639 1.136252 CCGCGTCTCAACAATGTCTTG 60.136 52.381 4.92 0.00 38.39 3.02
2631 2648 7.351223 GTCTCAACAATGTCTTGAAGAAGAAG 58.649 38.462 0.00 0.00 40.00 2.85
2634 2651 4.464008 ACAATGTCTTGAAGAAGAAGGCA 58.536 39.130 0.00 0.00 40.00 4.75
2697 2714 4.106925 CTGCCAGACCCTCTGCCC 62.107 72.222 0.00 0.00 42.98 5.36
2739 2756 2.085343 AACTGCCACTTGCCATCCCT 62.085 55.000 0.00 0.00 40.16 4.20
2746 2763 1.229359 CTTGCCATCCCTGCCATCT 59.771 57.895 0.00 0.00 0.00 2.90
2841 2859 3.554342 CTCCCAGATCCAGGCCCG 61.554 72.222 0.00 0.00 0.00 6.13
2967 2985 2.202987 CATCACGGAGGAGCAGCC 60.203 66.667 0.00 0.00 0.00 4.85
3161 3182 7.010552 GTGAATCGACATTTTGTGAGTAGCTAT 59.989 37.037 0.00 0.00 0.00 2.97
3233 3254 4.779696 AGGTTCAGTGGGTTTAACGTTTA 58.220 39.130 5.91 0.00 0.00 2.01
3240 3261 4.758165 AGTGGGTTTAACGTTTATGGACTG 59.242 41.667 5.91 0.00 0.00 3.51
3242 3263 5.239087 GTGGGTTTAACGTTTATGGACTGAA 59.761 40.000 5.91 0.00 0.00 3.02
3270 3291 3.756963 CCCTGGTTAAGCTTTTGTAGTCC 59.243 47.826 3.20 0.00 0.00 3.85
3309 3330 8.585471 ATCTTCTGATCCTTTTGCTTATTTCA 57.415 30.769 0.00 0.00 0.00 2.69
3459 3485 4.159377 TGCTTGATTTCGTTTCATGACC 57.841 40.909 0.00 0.00 0.00 4.02
3471 3497 6.693466 TCGTTTCATGACCTACAGATGTTTA 58.307 36.000 0.00 0.00 0.00 2.01
3520 4188 6.756221 TCTACCAGTTAGTCAGGAAAAGTTC 58.244 40.000 0.00 0.00 0.00 3.01
3540 4208 1.142465 CCAGGCCATGATAGAGCAGTT 59.858 52.381 5.01 0.00 0.00 3.16
3621 4289 3.088532 GTCTATTGGTTGCATTGGGTGA 58.911 45.455 0.00 0.00 0.00 4.02
3809 4479 2.556622 CCCACCTTTACACATTGTCACC 59.443 50.000 0.00 0.00 0.00 4.02
3810 4480 3.218453 CCACCTTTACACATTGTCACCA 58.782 45.455 0.00 0.00 0.00 4.17
3859 4529 5.809051 TGCGAATGCTGATATACTCATGATC 59.191 40.000 0.00 0.00 43.34 2.92
3939 4609 4.787135 TGGCCATCCAATTGAGTACATA 57.213 40.909 0.00 0.00 39.99 2.29
4098 4768 5.106197 ACAATGTATGCCAATGTACTGTGTG 60.106 40.000 0.00 0.00 35.40 3.82
4113 4788 5.528043 ACTGTGTGTTTGATGGCAAAATA 57.472 34.783 0.00 0.00 44.91 1.40
4143 4818 6.618287 TTGACTGTCATCCTACTTTTTGTG 57.382 37.500 11.86 0.00 0.00 3.33
4214 4889 4.695217 TGTCGGCATTTCCTGAATTAAC 57.305 40.909 0.00 0.00 0.00 2.01
4357 5033 2.363306 TGATGTTCCTTTGTGCTGGT 57.637 45.000 0.00 0.00 0.00 4.00
4398 5074 3.531538 TCTCCGTATGATGTTCCTTTGC 58.468 45.455 0.00 0.00 0.00 3.68
4405 5081 2.571212 TGATGTTCCTTTGCGTTGTCT 58.429 42.857 0.00 0.00 0.00 3.41
4412 5088 1.403679 CCTTTGCGTTGTCTTGACCAA 59.596 47.619 0.00 0.00 0.00 3.67
4422 5099 5.469479 GTTGTCTTGACCAATGTTTATGGG 58.531 41.667 0.00 0.00 42.48 4.00
4460 5137 6.316390 AGTTGCGGATATAGGAAGAACAAAAG 59.684 38.462 0.00 0.00 0.00 2.27
4463 5140 4.515567 CGGATATAGGAAGAACAAAAGGCC 59.484 45.833 0.00 0.00 0.00 5.19
4468 5145 6.747414 ATAGGAAGAACAAAAGGCCTTTTT 57.253 33.333 35.67 24.88 40.45 1.94
4508 5185 0.526096 CGTGCATGCCATAAACTGCC 60.526 55.000 16.68 0.00 33.70 4.85
4531 5208 1.066454 GAAGGACAAAACCAACCACCG 59.934 52.381 0.00 0.00 0.00 4.94
4568 5245 3.441572 CGCTGGATTTTCCTGAATTCTGT 59.558 43.478 7.05 0.00 37.65 3.41
4587 5264 6.545504 TCTGTGTGAATTAGTTTCTTCTGC 57.454 37.500 0.00 0.00 35.23 4.26
4613 5290 2.459060 TGCATTTGCCACATTGAAGG 57.541 45.000 0.00 0.00 41.18 3.46
4624 5301 4.321974 GCCACATTGAAGGGTAAAAGAAGG 60.322 45.833 0.00 0.00 0.00 3.46
4625 5302 5.076873 CCACATTGAAGGGTAAAAGAAGGA 58.923 41.667 0.00 0.00 0.00 3.36
4644 5321 2.163412 GGAAAATATGTGAAGCACGCCA 59.837 45.455 0.00 0.00 37.14 5.69
4646 5323 1.382522 AATATGTGAAGCACGCCAGG 58.617 50.000 0.00 0.00 37.14 4.45
4680 5357 1.816074 TGGAAAGTATTGACCGGTGC 58.184 50.000 14.63 4.13 0.00 5.01
4681 5358 1.092348 GGAAAGTATTGACCGGTGCC 58.908 55.000 14.63 0.00 0.00 5.01
4682 5359 1.612199 GGAAAGTATTGACCGGTGCCA 60.612 52.381 14.63 0.19 0.00 4.92
4683 5360 2.156098 GAAAGTATTGACCGGTGCCAA 58.844 47.619 14.63 12.23 0.00 4.52
4684 5361 1.821216 AAGTATTGACCGGTGCCAAG 58.179 50.000 14.63 0.00 0.00 3.61
4685 5362 0.035439 AGTATTGACCGGTGCCAAGG 60.035 55.000 14.63 0.00 0.00 3.61
4686 5363 0.322187 GTATTGACCGGTGCCAAGGT 60.322 55.000 14.63 0.00 44.64 3.50
4687 5364 0.322098 TATTGACCGGTGCCAAGGTG 60.322 55.000 14.63 0.00 41.51 4.00
4757 5438 7.066163 TGGTCATGCACAACTTAGAATAGATTG 59.934 37.037 0.00 0.00 0.00 2.67
4761 5442 6.237901 TGCACAACTTAGAATAGATTGTGGT 58.762 36.000 15.06 0.00 46.53 4.16
4776 5457 0.541764 GTGGTCCATCCCAAAGGCAA 60.542 55.000 0.00 0.00 35.92 4.52
4923 5604 4.766891 TCAGGTTTTGATGAGACATTTCCC 59.233 41.667 0.00 0.00 0.00 3.97
5004 5685 9.382275 GCCTTTTCCAATGATATTGTATTTTGT 57.618 29.630 0.00 0.00 0.00 2.83
5068 5753 3.785486 CGCAGTTCATCCTACATTCTCA 58.215 45.455 0.00 0.00 0.00 3.27
5201 5941 2.959030 GTCTGGCTTCAGGGTTTCTTTT 59.041 45.455 0.00 0.00 38.96 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 5.684184 GCGTTTAGAATTCGTGAACCTTTTT 59.316 36.000 0.00 0.00 0.00 1.94
48 49 5.209977 GCGTTTAGAATTCGTGAACCTTTT 58.790 37.500 0.00 0.00 0.00 2.27
49 50 4.273969 TGCGTTTAGAATTCGTGAACCTTT 59.726 37.500 0.00 0.00 0.00 3.11
50 51 3.810941 TGCGTTTAGAATTCGTGAACCTT 59.189 39.130 0.00 0.00 0.00 3.50
51 52 3.395639 TGCGTTTAGAATTCGTGAACCT 58.604 40.909 0.00 0.00 0.00 3.50
52 53 3.799137 TGCGTTTAGAATTCGTGAACC 57.201 42.857 0.00 2.68 0.00 3.62
53 54 6.358558 TGATTTTGCGTTTAGAATTCGTGAAC 59.641 34.615 0.00 5.81 0.00 3.18
54 55 6.431278 TGATTTTGCGTTTAGAATTCGTGAA 58.569 32.000 0.00 0.00 0.00 3.18
55 56 5.991568 TGATTTTGCGTTTAGAATTCGTGA 58.008 33.333 0.00 0.00 0.00 4.35
56 57 6.305399 ACATGATTTTGCGTTTAGAATTCGTG 59.695 34.615 0.00 0.00 0.00 4.35
57 58 6.378582 ACATGATTTTGCGTTTAGAATTCGT 58.621 32.000 0.00 0.00 0.00 3.85
58 59 6.853279 ACATGATTTTGCGTTTAGAATTCG 57.147 33.333 0.00 0.00 0.00 3.34
141 142 2.098443 TCTTGCTGGAACGGTTTTGTTC 59.902 45.455 0.00 0.00 45.91 3.18
142 143 2.096248 TCTTGCTGGAACGGTTTTGTT 58.904 42.857 0.00 0.00 36.83 2.83
143 144 1.757682 TCTTGCTGGAACGGTTTTGT 58.242 45.000 0.00 0.00 36.83 2.83
144 145 2.861462 TTCTTGCTGGAACGGTTTTG 57.139 45.000 0.00 0.00 36.83 2.44
145 146 3.445805 TCTTTTCTTGCTGGAACGGTTTT 59.554 39.130 0.00 0.00 36.83 2.43
146 147 3.020984 TCTTTTCTTGCTGGAACGGTTT 58.979 40.909 0.00 0.00 36.83 3.27
147 148 2.618709 CTCTTTTCTTGCTGGAACGGTT 59.381 45.455 0.00 0.00 36.83 4.44
148 149 2.158813 TCTCTTTTCTTGCTGGAACGGT 60.159 45.455 0.00 0.00 36.83 4.83
149 150 2.494059 TCTCTTTTCTTGCTGGAACGG 58.506 47.619 0.00 0.00 38.10 4.44
150 151 3.312421 TGTTCTCTTTTCTTGCTGGAACG 59.688 43.478 0.00 0.00 35.71 3.95
151 152 4.900635 TGTTCTCTTTTCTTGCTGGAAC 57.099 40.909 0.00 0.00 34.20 3.62
152 153 5.913137 TTTGTTCTCTTTTCTTGCTGGAA 57.087 34.783 0.00 0.00 0.00 3.53
153 154 5.652014 TCTTTTGTTCTCTTTTCTTGCTGGA 59.348 36.000 0.00 0.00 0.00 3.86
154 155 5.894807 TCTTTTGTTCTCTTTTCTTGCTGG 58.105 37.500 0.00 0.00 0.00 4.85
155 156 7.031975 ACTTCTTTTGTTCTCTTTTCTTGCTG 58.968 34.615 0.00 0.00 0.00 4.41
156 157 7.163001 ACTTCTTTTGTTCTCTTTTCTTGCT 57.837 32.000 0.00 0.00 0.00 3.91
157 158 8.911247 TTACTTCTTTTGTTCTCTTTTCTTGC 57.089 30.769 0.00 0.00 0.00 4.01
162 163 9.929180 AGCTTTTTACTTCTTTTGTTCTCTTTT 57.071 25.926 0.00 0.00 0.00 2.27
183 184 9.110502 GCCTTTTACATGTCTAGTTATAGCTTT 57.889 33.333 0.00 0.00 0.00 3.51
184 185 8.487028 AGCCTTTTACATGTCTAGTTATAGCTT 58.513 33.333 0.00 0.00 0.00 3.74
185 186 7.928706 CAGCCTTTTACATGTCTAGTTATAGCT 59.071 37.037 0.00 0.00 0.00 3.32
186 187 7.171678 CCAGCCTTTTACATGTCTAGTTATAGC 59.828 40.741 0.00 0.00 0.00 2.97
187 188 8.204836 ACCAGCCTTTTACATGTCTAGTTATAG 58.795 37.037 0.00 0.00 0.00 1.31
188 189 8.086143 ACCAGCCTTTTACATGTCTAGTTATA 57.914 34.615 0.00 0.00 0.00 0.98
189 190 6.958767 ACCAGCCTTTTACATGTCTAGTTAT 58.041 36.000 0.00 0.00 0.00 1.89
190 191 6.368779 ACCAGCCTTTTACATGTCTAGTTA 57.631 37.500 0.00 0.00 0.00 2.24
191 192 5.242795 ACCAGCCTTTTACATGTCTAGTT 57.757 39.130 0.00 0.00 0.00 2.24
192 193 4.910458 ACCAGCCTTTTACATGTCTAGT 57.090 40.909 0.00 0.00 0.00 2.57
193 194 5.978814 ACTACCAGCCTTTTACATGTCTAG 58.021 41.667 0.00 0.00 0.00 2.43
194 195 6.170506 CAACTACCAGCCTTTTACATGTCTA 58.829 40.000 0.00 0.00 0.00 2.59
195 196 4.910458 ACTACCAGCCTTTTACATGTCT 57.090 40.909 0.00 0.00 0.00 3.41
196 197 4.156008 CCAACTACCAGCCTTTTACATGTC 59.844 45.833 0.00 0.00 0.00 3.06
197 198 4.079253 CCAACTACCAGCCTTTTACATGT 58.921 43.478 2.69 2.69 0.00 3.21
198 199 4.079253 ACCAACTACCAGCCTTTTACATG 58.921 43.478 0.00 0.00 0.00 3.21
199 200 4.382386 ACCAACTACCAGCCTTTTACAT 57.618 40.909 0.00 0.00 0.00 2.29
200 201 3.868619 ACCAACTACCAGCCTTTTACA 57.131 42.857 0.00 0.00 0.00 2.41
201 202 3.254903 CCAACCAACTACCAGCCTTTTAC 59.745 47.826 0.00 0.00 0.00 2.01
202 203 3.117436 ACCAACCAACTACCAGCCTTTTA 60.117 43.478 0.00 0.00 0.00 1.52
203 204 2.316108 CCAACCAACTACCAGCCTTTT 58.684 47.619 0.00 0.00 0.00 2.27
204 205 1.216930 ACCAACCAACTACCAGCCTTT 59.783 47.619 0.00 0.00 0.00 3.11
205 206 0.850784 ACCAACCAACTACCAGCCTT 59.149 50.000 0.00 0.00 0.00 4.35
206 207 0.850784 AACCAACCAACTACCAGCCT 59.149 50.000 0.00 0.00 0.00 4.58
207 208 2.156917 GTAACCAACCAACTACCAGCC 58.843 52.381 0.00 0.00 0.00 4.85
208 209 1.802365 CGTAACCAACCAACTACCAGC 59.198 52.381 0.00 0.00 0.00 4.85
209 210 2.224354 ACCGTAACCAACCAACTACCAG 60.224 50.000 0.00 0.00 0.00 4.00
210 211 1.767681 ACCGTAACCAACCAACTACCA 59.232 47.619 0.00 0.00 0.00 3.25
211 212 2.549064 ACCGTAACCAACCAACTACC 57.451 50.000 0.00 0.00 0.00 3.18
212 213 2.995939 GCTACCGTAACCAACCAACTAC 59.004 50.000 0.00 0.00 0.00 2.73
213 214 2.352617 CGCTACCGTAACCAACCAACTA 60.353 50.000 0.00 0.00 0.00 2.24
214 215 1.606224 CGCTACCGTAACCAACCAACT 60.606 52.381 0.00 0.00 0.00 3.16
215 216 0.792031 CGCTACCGTAACCAACCAAC 59.208 55.000 0.00 0.00 0.00 3.77
216 217 0.678395 TCGCTACCGTAACCAACCAA 59.322 50.000 0.00 0.00 35.54 3.67
217 218 0.038343 GTCGCTACCGTAACCAACCA 60.038 55.000 0.00 0.00 35.54 3.67
218 219 0.737367 GGTCGCTACCGTAACCAACC 60.737 60.000 0.00 0.00 35.62 3.77
219 220 2.741930 GGTCGCTACCGTAACCAAC 58.258 57.895 0.00 0.00 35.62 3.77
228 229 1.353076 CAGGTTAAACGGTCGCTACC 58.647 55.000 0.00 0.00 42.95 3.18
229 230 1.337167 ACCAGGTTAAACGGTCGCTAC 60.337 52.381 1.78 0.00 0.00 3.58
230 231 0.968405 ACCAGGTTAAACGGTCGCTA 59.032 50.000 1.78 0.00 0.00 4.26
231 232 0.601841 CACCAGGTTAAACGGTCGCT 60.602 55.000 4.35 0.00 0.00 4.93
232 233 0.600782 TCACCAGGTTAAACGGTCGC 60.601 55.000 4.35 0.00 0.00 5.19
233 234 1.997606 GATCACCAGGTTAAACGGTCG 59.002 52.381 4.35 2.35 0.00 4.79
234 235 2.027469 AGGATCACCAGGTTAAACGGTC 60.027 50.000 4.35 0.00 38.94 4.79
235 236 1.982958 AGGATCACCAGGTTAAACGGT 59.017 47.619 0.00 1.78 38.94 4.83
236 237 2.781681 AGGATCACCAGGTTAAACGG 57.218 50.000 0.00 0.60 38.94 4.44
237 238 3.818773 ACAAAGGATCACCAGGTTAAACG 59.181 43.478 0.00 0.00 38.94 3.60
238 239 5.562113 CGAACAAAGGATCACCAGGTTAAAC 60.562 44.000 0.00 0.00 38.94 2.01
239 240 4.517453 CGAACAAAGGATCACCAGGTTAAA 59.483 41.667 0.00 0.00 38.94 1.52
240 241 4.069304 CGAACAAAGGATCACCAGGTTAA 58.931 43.478 0.00 0.00 38.94 2.01
241 242 3.325425 TCGAACAAAGGATCACCAGGTTA 59.675 43.478 0.00 0.00 38.94 2.85
242 243 2.105821 TCGAACAAAGGATCACCAGGTT 59.894 45.455 0.00 0.00 38.94 3.50
243 244 1.697432 TCGAACAAAGGATCACCAGGT 59.303 47.619 0.00 0.00 38.94 4.00
244 245 2.350522 CTCGAACAAAGGATCACCAGG 58.649 52.381 0.00 0.00 38.94 4.45
245 246 1.734465 GCTCGAACAAAGGATCACCAG 59.266 52.381 0.00 0.00 38.94 4.00
246 247 1.610624 GGCTCGAACAAAGGATCACCA 60.611 52.381 0.00 0.00 38.94 4.17
247 248 1.087501 GGCTCGAACAAAGGATCACC 58.912 55.000 0.00 0.00 0.00 4.02
248 249 1.464997 GTGGCTCGAACAAAGGATCAC 59.535 52.381 0.00 0.00 0.00 3.06
249 250 1.808411 GTGGCTCGAACAAAGGATCA 58.192 50.000 0.00 0.00 0.00 2.92
250 251 0.721718 CGTGGCTCGAACAAAGGATC 59.278 55.000 2.21 0.00 42.86 3.36
251 252 0.320374 TCGTGGCTCGAACAAAGGAT 59.680 50.000 9.46 0.00 45.98 3.24
252 253 1.743391 TCGTGGCTCGAACAAAGGA 59.257 52.632 9.46 0.00 45.98 3.36
253 254 4.354155 TCGTGGCTCGAACAAAGG 57.646 55.556 9.46 0.00 45.98 3.11
260 261 0.815095 ATGTACATGTCGTGGCTCGA 59.185 50.000 7.78 7.67 46.83 4.04
261 262 0.923403 CATGTACATGTCGTGGCTCG 59.077 55.000 24.91 1.94 41.41 5.03
311 312 0.032815 CCGGCCCACGTTCAATTTTT 59.967 50.000 0.00 0.00 42.24 1.94
312 313 1.663173 CCGGCCCACGTTCAATTTT 59.337 52.632 0.00 0.00 42.24 1.82
313 314 2.926420 GCCGGCCCACGTTCAATTT 61.926 57.895 18.11 0.00 42.24 1.82
314 315 3.370231 GCCGGCCCACGTTCAATT 61.370 61.111 18.11 0.00 42.24 2.32
351 352 3.652539 TTAGCGGTACAGGGCGCAC 62.653 63.158 10.83 5.15 0.00 5.34
352 353 3.365291 CTTAGCGGTACAGGGCGCA 62.365 63.158 10.83 1.01 0.00 6.09
353 354 2.585247 CTTAGCGGTACAGGGCGC 60.585 66.667 0.00 0.00 0.00 6.53
354 355 2.585247 GCTTAGCGGTACAGGGCG 60.585 66.667 0.00 0.00 0.00 6.13
355 356 1.397390 TAGGCTTAGCGGTACAGGGC 61.397 60.000 0.00 0.39 0.00 5.19
356 357 1.339097 ATAGGCTTAGCGGTACAGGG 58.661 55.000 0.00 0.00 0.00 4.45
357 358 3.611057 CGTTATAGGCTTAGCGGTACAGG 60.611 52.174 0.00 0.00 0.00 4.00
358 359 3.562505 CGTTATAGGCTTAGCGGTACAG 58.437 50.000 0.00 0.00 0.00 2.74
359 360 2.294233 CCGTTATAGGCTTAGCGGTACA 59.706 50.000 17.30 0.00 40.02 2.90
360 361 2.352127 CCCGTTATAGGCTTAGCGGTAC 60.352 54.545 20.96 0.00 42.39 3.34
361 362 1.888512 CCCGTTATAGGCTTAGCGGTA 59.111 52.381 20.96 0.00 42.39 4.02
362 363 0.677842 CCCGTTATAGGCTTAGCGGT 59.322 55.000 20.96 0.00 42.39 5.68
363 364 3.509388 CCCGTTATAGGCTTAGCGG 57.491 57.895 18.07 18.07 43.23 5.52
371 372 3.036084 CGCTGCGCCCGTTATAGG 61.036 66.667 9.88 0.00 0.00 2.57
372 373 3.036084 CCGCTGCGCCCGTTATAG 61.036 66.667 18.00 0.00 0.00 1.31
373 374 4.595538 CCCGCTGCGCCCGTTATA 62.596 66.667 18.00 0.00 0.00 0.98
388 389 1.431845 CAATTCCTAAACGGCGCCC 59.568 57.895 23.46 2.84 0.00 6.13
389 390 1.226575 GCAATTCCTAAACGGCGCC 60.227 57.895 19.07 19.07 0.00 6.53
390 391 1.226575 GGCAATTCCTAAACGGCGC 60.227 57.895 6.90 0.00 0.00 6.53
391 392 1.431845 GGGCAATTCCTAAACGGCG 59.568 57.895 4.80 4.80 34.39 6.46
392 393 1.310216 ACGGGCAATTCCTAAACGGC 61.310 55.000 0.00 0.00 34.39 5.68
393 394 0.450184 CACGGGCAATTCCTAAACGG 59.550 55.000 0.00 0.00 34.39 4.44
394 395 0.450184 CCACGGGCAATTCCTAAACG 59.550 55.000 0.00 0.00 34.39 3.60
407 408 4.096003 AAGGGACGATGCCACGGG 62.096 66.667 0.00 0.00 37.61 5.28
408 409 2.233605 TACAAGGGACGATGCCACGG 62.234 60.000 0.00 0.00 37.61 4.94
409 410 1.082117 GTACAAGGGACGATGCCACG 61.082 60.000 0.00 0.00 39.31 4.94
410 411 1.082117 CGTACAAGGGACGATGCCAC 61.082 60.000 0.00 0.00 42.98 5.01
411 412 1.216977 CGTACAAGGGACGATGCCA 59.783 57.895 0.00 0.00 42.98 4.92
412 413 1.514087 TCGTACAAGGGACGATGCC 59.486 57.895 0.00 0.00 43.99 4.40
417 418 1.143183 CCCCATCGTACAAGGGACG 59.857 63.158 14.19 0.00 45.80 4.79
418 419 1.153229 GCCCCATCGTACAAGGGAC 60.153 63.158 14.19 0.93 45.80 4.46
419 420 0.986019 ATGCCCCATCGTACAAGGGA 60.986 55.000 14.19 0.00 45.80 4.20
420 421 0.819259 CATGCCCCATCGTACAAGGG 60.819 60.000 7.18 7.18 42.94 3.95
421 422 0.107214 ACATGCCCCATCGTACAAGG 60.107 55.000 0.00 0.00 0.00 3.61
422 423 2.613026 TACATGCCCCATCGTACAAG 57.387 50.000 0.00 0.00 0.00 3.16
423 424 3.569194 AATACATGCCCCATCGTACAA 57.431 42.857 0.00 0.00 0.00 2.41
424 425 3.210227 CAAATACATGCCCCATCGTACA 58.790 45.455 0.00 0.00 0.00 2.90
425 426 2.031157 GCAAATACATGCCCCATCGTAC 60.031 50.000 0.00 0.00 40.49 3.67
426 427 2.226330 GCAAATACATGCCCCATCGTA 58.774 47.619 0.00 0.00 40.49 3.43
427 428 1.032014 GCAAATACATGCCCCATCGT 58.968 50.000 0.00 0.00 40.49 3.73
428 429 3.871775 GCAAATACATGCCCCATCG 57.128 52.632 0.00 0.00 40.49 3.84
435 436 2.417097 GCCCCGGCAAATACATGC 59.583 61.111 0.00 0.00 45.67 4.06
445 446 2.203351 CTCCCTATTTGCCCCGGC 60.203 66.667 0.00 0.00 42.35 6.13
446 447 1.148498 GTCTCCCTATTTGCCCCGG 59.852 63.158 0.00 0.00 0.00 5.73
447 448 1.148498 GGTCTCCCTATTTGCCCCG 59.852 63.158 0.00 0.00 0.00 5.73
448 449 1.537172 GGGTCTCCCTATTTGCCCC 59.463 63.158 0.00 0.00 41.34 5.80
449 450 1.148498 CGGGTCTCCCTATTTGCCC 59.852 63.158 3.25 0.00 42.67 5.36
450 451 0.255033 AACGGGTCTCCCTATTTGCC 59.745 55.000 3.25 0.00 42.67 4.52
451 452 2.994186 TAACGGGTCTCCCTATTTGC 57.006 50.000 3.25 0.00 42.67 3.68
452 453 3.453353 TCCTTAACGGGTCTCCCTATTTG 59.547 47.826 3.25 0.00 42.67 2.32
453 454 3.710165 CTCCTTAACGGGTCTCCCTATTT 59.290 47.826 3.25 0.00 42.67 1.40
454 455 3.306613 CTCCTTAACGGGTCTCCCTATT 58.693 50.000 3.25 0.71 42.67 1.73
455 456 2.960163 CTCCTTAACGGGTCTCCCTAT 58.040 52.381 3.25 0.00 42.67 2.57
456 457 1.687368 GCTCCTTAACGGGTCTCCCTA 60.687 57.143 3.25 0.00 42.67 3.53
457 458 0.976590 GCTCCTTAACGGGTCTCCCT 60.977 60.000 3.25 0.00 42.67 4.20
458 459 0.976590 AGCTCCTTAACGGGTCTCCC 60.977 60.000 0.00 0.00 41.09 4.30
459 460 0.460722 GAGCTCCTTAACGGGTCTCC 59.539 60.000 0.87 0.00 0.00 3.71
460 461 0.460722 GGAGCTCCTTAACGGGTCTC 59.539 60.000 26.25 0.00 0.00 3.36
461 462 0.976590 GGGAGCTCCTTAACGGGTCT 60.977 60.000 31.36 0.00 35.95 3.85
462 463 1.521141 GGGAGCTCCTTAACGGGTC 59.479 63.158 31.36 8.41 35.95 4.46
463 464 2.356780 CGGGAGCTCCTTAACGGGT 61.357 63.158 31.36 0.00 35.95 5.28
464 465 1.039233 TACGGGAGCTCCTTAACGGG 61.039 60.000 31.36 14.18 35.95 5.28
465 466 0.384669 CTACGGGAGCTCCTTAACGG 59.615 60.000 31.36 15.78 35.95 4.44
466 467 1.386533 TCTACGGGAGCTCCTTAACG 58.613 55.000 31.36 26.53 35.95 3.18
467 468 2.101082 CCTTCTACGGGAGCTCCTTAAC 59.899 54.545 31.36 14.37 35.95 2.01
468 469 2.385803 CCTTCTACGGGAGCTCCTTAA 58.614 52.381 31.36 15.73 35.95 1.85
469 470 2.068834 CCTTCTACGGGAGCTCCTTA 57.931 55.000 31.36 20.75 35.95 2.69
470 471 2.903404 CCTTCTACGGGAGCTCCTT 58.097 57.895 31.36 20.74 35.95 3.36
471 472 4.688770 CCTTCTACGGGAGCTCCT 57.311 61.111 31.36 16.10 35.95 3.69
479 480 2.125673 CGTGGTGCCCTTCTACGG 60.126 66.667 0.00 0.00 36.44 4.02
480 481 2.813908 GCGTGGTGCCCTTCTACG 60.814 66.667 0.00 0.00 41.37 3.51
481 482 2.813908 CGCGTGGTGCCCTTCTAC 60.814 66.667 0.00 0.00 42.08 2.59
482 483 3.307906 ACGCGTGGTGCCCTTCTA 61.308 61.111 12.93 0.00 42.08 2.10
483 484 4.988598 CACGCGTGGTGCCCTTCT 62.989 66.667 31.15 0.00 40.33 2.85
502 503 4.735132 ATGGGTCGTGTCGTGGCG 62.735 66.667 0.00 0.00 0.00 5.69
503 504 2.358247 AATGGGTCGTGTCGTGGC 60.358 61.111 0.00 0.00 0.00 5.01
504 505 0.391130 ATGAATGGGTCGTGTCGTGG 60.391 55.000 0.00 0.00 0.00 4.94
505 506 2.287393 TATGAATGGGTCGTGTCGTG 57.713 50.000 0.00 0.00 0.00 4.35
506 507 2.997986 GTTTATGAATGGGTCGTGTCGT 59.002 45.455 0.00 0.00 0.00 4.34
507 508 2.028763 CGTTTATGAATGGGTCGTGTCG 59.971 50.000 0.00 0.00 0.00 4.35
508 509 2.350498 CCGTTTATGAATGGGTCGTGTC 59.650 50.000 0.39 0.00 38.13 3.67
509 510 2.352388 CCGTTTATGAATGGGTCGTGT 58.648 47.619 0.39 0.00 38.13 4.49
516 517 4.695455 CCATAGTAGCCCGTTTATGAATGG 59.305 45.833 1.40 1.40 40.92 3.16
517 518 4.695455 CCCATAGTAGCCCGTTTATGAATG 59.305 45.833 0.00 0.00 0.00 2.67
518 519 4.806286 GCCCATAGTAGCCCGTTTATGAAT 60.806 45.833 0.00 0.00 0.00 2.57
519 520 3.495453 GCCCATAGTAGCCCGTTTATGAA 60.495 47.826 0.00 0.00 0.00 2.57
520 521 2.038033 GCCCATAGTAGCCCGTTTATGA 59.962 50.000 0.00 0.00 0.00 2.15
521 522 2.038557 AGCCCATAGTAGCCCGTTTATG 59.961 50.000 0.00 0.00 0.00 1.90
522 523 2.038557 CAGCCCATAGTAGCCCGTTTAT 59.961 50.000 0.00 0.00 0.00 1.40
523 524 1.414919 CAGCCCATAGTAGCCCGTTTA 59.585 52.381 0.00 0.00 0.00 2.01
524 525 0.180406 CAGCCCATAGTAGCCCGTTT 59.820 55.000 0.00 0.00 0.00 3.60
525 526 0.981277 ACAGCCCATAGTAGCCCGTT 60.981 55.000 0.00 0.00 0.00 4.44
526 527 1.382695 ACAGCCCATAGTAGCCCGT 60.383 57.895 0.00 0.00 0.00 5.28
527 528 1.069765 CACAGCCCATAGTAGCCCG 59.930 63.158 0.00 0.00 0.00 6.13
528 529 1.227973 GCACAGCCCATAGTAGCCC 60.228 63.158 0.00 0.00 0.00 5.19
529 530 1.227973 GGCACAGCCCATAGTAGCC 60.228 63.158 0.00 0.00 44.06 3.93
530 531 4.464262 GGCACAGCCCATAGTAGC 57.536 61.111 0.00 0.00 44.06 3.58
539 540 2.652095 TACCTGGTACGGCACAGCC 61.652 63.158 1.49 0.00 46.75 4.85
540 541 1.447314 GTACCTGGTACGGCACAGC 60.447 63.158 20.34 0.00 33.43 4.40
541 542 4.904466 GTACCTGGTACGGCACAG 57.096 61.111 20.34 0.00 34.54 3.66
548 549 3.195396 TGACCCATTAACGTACCTGGTAC 59.805 47.826 24.03 24.03 35.86 3.34
549 550 3.439154 TGACCCATTAACGTACCTGGTA 58.561 45.455 1.49 1.49 0.00 3.25
550 551 2.235402 CTGACCCATTAACGTACCTGGT 59.765 50.000 4.05 4.05 0.00 4.00
551 552 2.901249 CTGACCCATTAACGTACCTGG 58.099 52.381 0.00 0.00 0.00 4.45
552 553 2.277084 GCTGACCCATTAACGTACCTG 58.723 52.381 0.00 0.00 0.00 4.00
553 554 1.208776 GGCTGACCCATTAACGTACCT 59.791 52.381 0.00 0.00 0.00 3.08
554 555 1.660167 GGCTGACCCATTAACGTACC 58.340 55.000 0.00 0.00 0.00 3.34
574 575 3.832237 AATGGGCCGGCATAGCTCG 62.832 63.158 30.85 0.00 31.45 5.03
575 576 1.529244 AAATGGGCCGGCATAGCTC 60.529 57.895 30.85 9.47 0.00 4.09
576 577 1.829533 CAAATGGGCCGGCATAGCT 60.830 57.895 30.85 6.22 0.00 3.32
577 578 2.730094 CAAATGGGCCGGCATAGC 59.270 61.111 30.85 10.78 0.00 2.97
578 579 3.447040 CCAAATGGGCCGGCATAG 58.553 61.111 30.85 11.08 0.00 2.23
587 588 1.683365 CCTGACCTGGCCAAATGGG 60.683 63.158 7.01 7.12 40.85 4.00
588 589 1.683365 CCCTGACCTGGCCAAATGG 60.683 63.158 7.01 7.56 38.53 3.16
589 590 2.353610 GCCCTGACCTGGCCAAATG 61.354 63.158 7.01 0.12 43.33 2.32
590 591 2.037847 GCCCTGACCTGGCCAAAT 59.962 61.111 7.01 0.00 43.33 2.32
596 597 0.961753 GTTCTTTTGCCCTGACCTGG 59.038 55.000 0.00 0.00 0.00 4.45
597 598 1.882623 GAGTTCTTTTGCCCTGACCTG 59.117 52.381 0.00 0.00 0.00 4.00
598 599 1.543429 CGAGTTCTTTTGCCCTGACCT 60.543 52.381 0.00 0.00 0.00 3.85
599 600 0.875059 CGAGTTCTTTTGCCCTGACC 59.125 55.000 0.00 0.00 0.00 4.02
600 601 1.531578 GACGAGTTCTTTTGCCCTGAC 59.468 52.381 0.00 0.00 0.00 3.51
601 602 1.416401 AGACGAGTTCTTTTGCCCTGA 59.584 47.619 0.00 0.00 0.00 3.86
602 603 1.801178 GAGACGAGTTCTTTTGCCCTG 59.199 52.381 0.00 0.00 33.22 4.45
603 604 1.270893 GGAGACGAGTTCTTTTGCCCT 60.271 52.381 0.00 0.00 33.22 5.19
604 605 1.157585 GGAGACGAGTTCTTTTGCCC 58.842 55.000 0.00 0.00 33.22 5.36
605 606 1.878953 TGGAGACGAGTTCTTTTGCC 58.121 50.000 0.00 0.00 33.22 4.52
606 607 4.222114 CAAATGGAGACGAGTTCTTTTGC 58.778 43.478 0.00 0.00 33.22 3.68
607 608 4.023707 AGCAAATGGAGACGAGTTCTTTTG 60.024 41.667 0.00 0.00 33.22 2.44
608 609 4.137543 AGCAAATGGAGACGAGTTCTTTT 58.862 39.130 0.00 0.00 33.22 2.27
609 610 3.744660 AGCAAATGGAGACGAGTTCTTT 58.255 40.909 0.00 0.00 33.22 2.52
610 611 3.330267 GAGCAAATGGAGACGAGTTCTT 58.670 45.455 0.00 0.00 33.22 2.52
611 612 2.354203 GGAGCAAATGGAGACGAGTTCT 60.354 50.000 0.00 0.00 37.23 3.01
612 613 2.003301 GGAGCAAATGGAGACGAGTTC 58.997 52.381 0.00 0.00 0.00 3.01
613 614 1.339151 GGGAGCAAATGGAGACGAGTT 60.339 52.381 0.00 0.00 0.00 3.01
614 615 0.250513 GGGAGCAAATGGAGACGAGT 59.749 55.000 0.00 0.00 0.00 4.18
615 616 0.250234 TGGGAGCAAATGGAGACGAG 59.750 55.000 0.00 0.00 0.00 4.18
616 617 2.371784 TGGGAGCAAATGGAGACGA 58.628 52.632 0.00 0.00 0.00 4.20
1000 1001 3.945434 GCCATGGCTGATGACGCG 61.945 66.667 29.98 3.53 38.26 6.01
1001 1002 3.945434 CGCCATGGCTGATGACGC 61.945 66.667 33.07 4.92 39.32 5.19
1478 1482 1.396301 GCAAGCCGAAAGATGAGAGTG 59.604 52.381 0.00 0.00 0.00 3.51
1656 1661 7.185453 CAGATTCATAGCTTTCAGTTGTAAGC 58.815 38.462 13.54 13.54 45.13 3.09
1668 1673 3.599343 TGAACGTGCAGATTCATAGCTT 58.401 40.909 8.21 0.00 29.89 3.74
1732 1737 6.456181 GCAGATTGTTTACATGACTCTGCTAC 60.456 42.308 19.18 0.00 46.51 3.58
1758 1763 3.002791 GCTCATGTGTTTAGCTGTAGCA 58.997 45.455 6.65 0.00 45.16 3.49
1920 1928 4.261801 GTGTGGGTTATCTTATGTGTGCT 58.738 43.478 0.00 0.00 0.00 4.40
2013 2023 9.379770 TCTCAAAGAGTGGGTATGATTATATCA 57.620 33.333 0.00 0.00 44.55 2.15
2019 2029 5.189180 GCTTCTCAAAGAGTGGGTATGATT 58.811 41.667 0.00 0.00 34.14 2.57
2201 2215 1.065701 GTTCGGCGATCTTCTCTAGCA 59.934 52.381 11.76 0.00 0.00 3.49
2350 2366 1.001269 TGAGAGATGTCGGGGTCGT 60.001 57.895 0.00 0.00 37.69 4.34
2462 2479 2.829384 GGAGGGACCAGTGGTTGCA 61.829 63.158 17.93 0.00 35.25 4.08
2494 2511 2.440247 GGGGGCATCGTTCTTGGG 60.440 66.667 0.00 0.00 0.00 4.12
2607 2624 6.484643 CCTTCTTCTTCAAGACATTGTTGAGA 59.515 38.462 0.00 0.00 38.44 3.27
2616 2633 2.872245 CGTTGCCTTCTTCTTCAAGACA 59.128 45.455 0.00 0.00 38.44 3.41
2697 2714 3.414700 GTCTGGCCGTTCTGTGCG 61.415 66.667 0.00 0.00 0.00 5.34
2746 2763 1.069668 CTCATCTGATGGGTCGATGCA 59.930 52.381 17.06 0.00 36.36 3.96
2750 2767 1.402896 GGGCTCATCTGATGGGTCGA 61.403 60.000 18.23 0.00 35.81 4.20
2970 2988 2.431683 GGGGCAACTCTGTGCAGA 59.568 61.111 1.69 1.69 46.81 4.26
2971 2989 2.113774 TGGGGCAACTCTGTGCAG 59.886 61.111 0.00 0.00 46.81 4.41
2972 2990 2.203337 GTGGGGCAACTCTGTGCA 60.203 61.111 0.00 0.00 46.81 4.57
2973 2991 3.357079 CGTGGGGCAACTCTGTGC 61.357 66.667 0.00 0.00 44.14 4.57
2974 2992 1.961277 GACGTGGGGCAACTCTGTG 60.961 63.158 0.00 0.00 38.64 3.66
2975 2993 2.426023 GACGTGGGGCAACTCTGT 59.574 61.111 0.00 0.00 38.64 3.41
2976 2994 2.709125 TTCGACGTGGGGCAACTCTG 62.709 60.000 0.00 0.00 38.64 3.35
2977 2995 2.436087 CTTCGACGTGGGGCAACTCT 62.436 60.000 0.00 0.00 38.64 3.24
2978 2996 2.027625 CTTCGACGTGGGGCAACTC 61.028 63.158 0.00 0.00 37.88 3.01
2979 2997 2.030562 CTTCGACGTGGGGCAACT 59.969 61.111 0.00 0.00 0.00 3.16
2980 2998 3.047877 CCTTCGACGTGGGGCAAC 61.048 66.667 0.00 0.00 0.00 4.17
2981 2999 3.234630 CTCCTTCGACGTGGGGCAA 62.235 63.158 0.00 0.00 0.00 4.52
2982 3000 3.691342 CTCCTTCGACGTGGGGCA 61.691 66.667 0.00 0.00 0.00 5.36
2984 3002 4.452733 GGCTCCTTCGACGTGGGG 62.453 72.222 0.00 7.31 0.00 4.96
2985 3003 4.796231 CGGCTCCTTCGACGTGGG 62.796 72.222 0.00 6.25 0.00 4.61
3121 3139 3.928992 TCGATTCACAAGATCAGAAGCAC 59.071 43.478 0.00 0.00 0.00 4.40
3233 3254 5.472301 AACCAGGGATAATTTCAGTCCAT 57.528 39.130 0.00 0.00 33.62 3.41
3240 3261 7.611770 ACAAAAGCTTAACCAGGGATAATTTC 58.388 34.615 0.00 0.00 0.00 2.17
3242 3263 7.893833 ACTACAAAAGCTTAACCAGGGATAATT 59.106 33.333 0.00 0.00 0.00 1.40
3270 3291 6.928979 ATCAGAAGATCTCATCAAGCAAAG 57.071 37.500 0.00 0.00 0.00 2.77
3309 3330 6.066690 ACAACAGGATGAGCTTGCATATTAT 58.933 36.000 0.00 0.00 39.69 1.28
3471 3497 4.464597 GGGAGAACTAGAGATGTGACAGTT 59.535 45.833 0.00 0.00 32.33 3.16
3520 4188 0.763652 ACTGCTCTATCATGGCCTGG 59.236 55.000 3.32 0.00 0.00 4.45
3540 4208 9.513906 TGAATATCACATGACAAACTCCTTAAA 57.486 29.630 0.00 0.00 0.00 1.52
3809 4479 0.892755 AGTGTGGCCAAAGCATGATG 59.107 50.000 7.24 0.00 42.56 3.07
3810 4480 0.892755 CAGTGTGGCCAAAGCATGAT 59.107 50.000 7.24 0.00 42.56 2.45
3939 4609 1.688772 GTGCATCCAGATCAAGGCAT 58.311 50.000 5.59 0.00 33.43 4.40
4098 4768 8.223100 GTCAAAGACAATATTTTGCCATCAAAC 58.777 33.333 0.00 0.00 35.95 2.93
4113 4788 6.365970 AGTAGGATGACAGTCAAAGACAAT 57.634 37.500 7.50 0.00 34.60 2.71
4143 4818 9.929722 TCGAAGTTAATGCAACATTATTATGTC 57.070 29.630 0.00 0.00 44.14 3.06
4181 4856 2.401583 TGCCGACAAATGTCAGCTAT 57.598 45.000 19.28 0.00 45.88 2.97
4214 4889 2.093783 GGAGTTTGATACGGAAAGTGCG 59.906 50.000 0.00 0.00 37.19 5.34
4357 5033 5.453903 GGAGAAAGGGAAATGATCTCGATGA 60.454 44.000 0.00 0.00 37.89 2.92
4398 5074 5.153513 CCATAAACATTGGTCAAGACAACG 58.846 41.667 2.29 0.00 0.00 4.10
4405 5081 6.924913 TGATTTCCCATAAACATTGGTCAA 57.075 33.333 0.00 0.00 31.99 3.18
4435 5112 5.353394 TTGTTCTTCCTATATCCGCAACT 57.647 39.130 0.00 0.00 0.00 3.16
4468 5145 0.539438 CACAGGCAGCAAGGGGTTAA 60.539 55.000 0.00 0.00 0.00 2.01
4482 5159 0.744057 TATGGCATGCACGTCACAGG 60.744 55.000 21.36 0.00 0.00 4.00
4508 5185 3.568430 GGTGGTTGGTTTTGTCCTTCTAG 59.432 47.826 0.00 0.00 0.00 2.43
4531 5208 1.212616 CAGCGTTCCGATTCCAGATC 58.787 55.000 0.00 0.00 0.00 2.75
4546 5223 3.441572 ACAGAATTCAGGAAAATCCAGCG 59.558 43.478 8.44 0.00 39.61 5.18
4548 5225 5.474532 TCACACAGAATTCAGGAAAATCCAG 59.525 40.000 8.44 0.00 39.61 3.86
4549 5226 5.384336 TCACACAGAATTCAGGAAAATCCA 58.616 37.500 8.44 0.00 39.61 3.41
4568 5245 7.939782 TGAATTGCAGAAGAAACTAATTCACA 58.060 30.769 0.00 0.00 38.72 3.58
4587 5264 4.393371 TCAATGTGGCAAATGCATGAATTG 59.607 37.500 0.00 2.14 44.36 2.32
4613 5290 8.303876 TGCTTCACATATTTTCCTTCTTTTACC 58.696 33.333 0.00 0.00 0.00 2.85
4624 5301 3.429085 CTGGCGTGCTTCACATATTTTC 58.571 45.455 0.00 0.00 33.40 2.29
4625 5302 2.164219 CCTGGCGTGCTTCACATATTTT 59.836 45.455 0.00 0.00 33.40 1.82
4680 5357 3.305516 GGCACCTTGGCACCTTGG 61.306 66.667 0.00 0.00 43.14 3.61
4757 5438 0.541764 TTGCCTTTGGGATGGACCAC 60.542 55.000 0.00 0.00 41.03 4.16
4761 5442 1.691434 GTTGTTTGCCTTTGGGATGGA 59.309 47.619 0.00 0.00 33.58 3.41
4776 5457 4.677779 GCATGAATAAATCCCTGCGTTGTT 60.678 41.667 0.00 0.00 0.00 2.83
4923 5604 5.886715 TGAAAACTCGAATGTTTGCAATG 57.113 34.783 8.17 0.00 41.11 2.82
5068 5753 2.893489 GAGCAAGTTCTTGATTTGGGGT 59.107 45.455 15.52 0.00 0.00 4.95
5201 5941 6.373216 CGACTAAAATTTCAACCTATCCACCA 59.627 38.462 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.