Multiple sequence alignment - TraesCS7A01G298200
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS7A01G298200
chr7A
100.000
5000
0
0
1
5000
403195103
403190104
0.000000e+00
9234.0
1
TraesCS7A01G298200
chr7A
89.855
69
4
3
4931
4999
365077257
365077192
8.920000e-13
86.1
2
TraesCS7A01G298200
chr7B
95.196
4996
146
30
1
4946
321340119
321345070
0.000000e+00
7810.0
3
TraesCS7A01G298200
chr7D
95.052
2607
93
15
2326
4913
365316516
365313927
0.000000e+00
4067.0
4
TraesCS7A01G298200
chr7D
93.855
1367
60
10
1
1355
365319022
365317668
0.000000e+00
2037.0
5
TraesCS7A01G298200
chr7D
96.552
986
22
5
1345
2328
365317632
365316657
0.000000e+00
1622.0
6
TraesCS7A01G298200
chr7D
90.909
66
4
2
4930
4994
478082393
478082457
2.480000e-13
87.9
7
TraesCS7A01G298200
chr2A
98.148
54
0
1
4941
4994
691214580
691214528
5.330000e-15
93.5
8
TraesCS7A01G298200
chr1D
96.429
56
1
1
4939
4994
472517773
472517827
1.920000e-14
91.6
9
TraesCS7A01G298200
chr1B
93.651
63
1
3
4932
4994
476030745
476030804
1.920000e-14
91.6
10
TraesCS7A01G298200
chr2D
94.828
58
2
1
4937
4994
121720738
121720682
6.890000e-14
89.8
11
TraesCS7A01G298200
chr6D
90.909
66
2
4
4935
4999
431311751
431311813
8.920000e-13
86.1
12
TraesCS7A01G298200
chr5A
90.769
65
4
2
4930
4994
618475129
618475191
8.920000e-13
86.1
13
TraesCS7A01G298200
chr2B
88.889
72
5
3
4925
4994
654952689
654952759
8.920000e-13
86.1
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS7A01G298200
chr7A
403190104
403195103
4999
True
9234.000000
9234
100.000
1
5000
1
chr7A.!!$R2
4999
1
TraesCS7A01G298200
chr7B
321340119
321345070
4951
False
7810.000000
7810
95.196
1
4946
1
chr7B.!!$F1
4945
2
TraesCS7A01G298200
chr7D
365313927
365319022
5095
True
2575.333333
4067
95.153
1
4913
3
chr7D.!!$R1
4912
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
899
908
0.322098
TATTGACCGGTGCCAAGGTG
60.322
55.000
14.63
0.0
41.51
4.00
F
1743
1815
0.530650
ATGACGCCACCATCGACATC
60.531
55.000
0.00
0.0
37.68
3.06
F
3564
3806
2.821969
ACAACTTTCCTGCATGGCTTAG
59.178
45.455
0.00
0.0
35.26
2.18
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
2350
2568
0.322975
AGAGCAGCCGATGAACAAGT
59.677
50.0
0.00
0.0
0.00
3.16
R
3607
3849
0.096454
GTGCCCTCGAAAATACACGC
59.904
55.0
0.00
0.0
0.00
5.34
R
4631
4875
0.253044
CGAATTCAGGAGGGGCTCAA
59.747
55.0
6.22
0.0
31.08
3.02
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
21
22
2.556622
CCCACCTTTACACATTGTCACC
59.443
50.000
0.00
0.00
0.00
4.02
22
23
3.218453
CCACCTTTACACATTGTCACCA
58.782
45.455
0.00
0.00
0.00
4.17
71
72
5.809051
TGCGAATGCTGATATACTCATGATC
59.191
40.000
0.00
0.00
43.34
2.92
151
152
4.787135
TGGCCATCCAATTGAGTACATA
57.213
40.909
0.00
0.00
39.99
2.29
310
311
5.106197
ACAATGTATGCCAATGTACTGTGTG
60.106
40.000
0.00
0.00
35.40
3.82
325
331
5.528043
ACTGTGTGTTTGATGGCAAAATA
57.472
34.783
0.00
0.00
44.91
1.40
355
361
6.618287
TTGACTGTCATCCTACTTTTTGTG
57.382
37.500
11.86
0.00
0.00
3.33
426
432
4.695217
TGTCGGCATTTCCTGAATTAAC
57.305
40.909
0.00
0.00
0.00
2.01
569
576
2.363306
TGATGTTCCTTTGTGCTGGT
57.637
45.000
0.00
0.00
0.00
4.00
610
617
3.531538
TCTCCGTATGATGTTCCTTTGC
58.468
45.455
0.00
0.00
0.00
3.68
617
624
2.571212
TGATGTTCCTTTGCGTTGTCT
58.429
42.857
0.00
0.00
0.00
3.41
624
631
1.403679
CCTTTGCGTTGTCTTGACCAA
59.596
47.619
0.00
0.00
0.00
3.67
634
642
5.469479
GTTGTCTTGACCAATGTTTATGGG
58.531
41.667
0.00
0.00
42.48
4.00
673
682
5.123227
TGCGGATATAGGAAGAACAAAAGG
58.877
41.667
0.00
0.00
0.00
3.11
674
683
4.023963
GCGGATATAGGAAGAACAAAAGGC
60.024
45.833
0.00
0.00
0.00
4.35
675
684
4.515567
CGGATATAGGAAGAACAAAAGGCC
59.484
45.833
0.00
0.00
0.00
5.19
679
688
7.124298
GGATATAGGAAGAACAAAAGGCCTTTT
59.876
37.037
33.27
33.27
42.91
2.27
680
689
6.747414
ATAGGAAGAACAAAAGGCCTTTTT
57.253
33.333
35.67
24.88
40.45
1.94
720
729
0.526096
CGTGCATGCCATAAACTGCC
60.526
55.000
16.68
0.00
33.70
4.85
743
752
1.066454
GAAGGACAAAACCAACCACCG
59.934
52.381
0.00
0.00
0.00
4.94
780
789
3.441572
CGCTGGATTTTCCTGAATTCTGT
59.558
43.478
7.05
0.00
37.65
3.41
799
808
6.545504
TCTGTGTGAATTAGTTTCTTCTGC
57.454
37.500
0.00
0.00
35.23
4.26
825
834
2.459060
TGCATTTGCCACATTGAAGG
57.541
45.000
0.00
0.00
41.18
3.46
836
845
4.321974
GCCACATTGAAGGGTAAAAGAAGG
60.322
45.833
0.00
0.00
0.00
3.46
837
846
5.076873
CCACATTGAAGGGTAAAAGAAGGA
58.923
41.667
0.00
0.00
0.00
3.36
856
865
2.163412
GGAAAATATGTGAAGCACGCCA
59.837
45.455
0.00
0.00
37.14
5.69
858
867
1.382522
AATATGTGAAGCACGCCAGG
58.617
50.000
0.00
0.00
37.14
4.45
899
908
0.322098
TATTGACCGGTGCCAAGGTG
60.322
55.000
14.63
0.00
41.51
4.00
900
909
4.947147
TGACCGGTGCCAAGGTGC
62.947
66.667
14.63
0.00
41.51
5.01
904
913
3.673484
CGGTGCCAAGGTGCCAAG
61.673
66.667
0.00
0.00
0.00
3.61
905
914
3.305516
GGTGCCAAGGTGCCAAGG
61.306
66.667
0.00
0.00
0.00
3.61
906
915
2.521708
GTGCCAAGGTGCCAAGGT
60.522
61.111
0.00
0.00
0.00
3.50
969
978
7.066163
TGGTCATGCACAACTTAGAATAGATTG
59.934
37.037
0.00
0.00
0.00
2.67
973
986
6.237901
TGCACAACTTAGAATAGATTGTGGT
58.762
36.000
15.06
0.00
46.53
4.16
988
1001
0.541764
GTGGTCCATCCCAAAGGCAA
60.542
55.000
0.00
0.00
35.92
4.52
1134
1147
5.964958
TCAGGTTTTGATGAGACATTTCC
57.035
39.130
0.00
0.00
0.00
3.13
1216
1229
9.382275
GCCTTTTCCAATGATATTGTATTTTGT
57.618
29.630
0.00
0.00
0.00
2.83
1280
1297
3.785486
CGCAGTTCATCCTACATTCTCA
58.215
45.455
0.00
0.00
0.00
3.27
1413
1485
2.959030
GTCTGGCTTCAGGGTTTCTTTT
59.041
45.455
0.00
0.00
38.96
2.27
1497
1569
9.613428
TGGTCGTATCTGATTTGATAATTTCTT
57.387
29.630
0.00
0.00
31.61
2.52
1743
1815
0.530650
ATGACGCCACCATCGACATC
60.531
55.000
0.00
0.00
37.68
3.06
2019
2094
8.856490
TGCTCAAAAGTGACTCTTAAAAATTC
57.144
30.769
0.00
0.00
35.02
2.17
2032
2107
9.267084
ACTCTTAAAAATTCTCTCAGAAGTGTC
57.733
33.333
0.00
0.00
37.69
3.67
2110
2185
5.713792
ACTAGATCACCATTACATCTCCG
57.286
43.478
0.00
0.00
0.00
4.63
2146
2221
5.179368
TGTTTTGACCGCATTTTGAAAAACA
59.821
32.000
6.69
6.69
41.27
2.83
2264
2339
4.382254
CCATGCTCACCAGTTGCAATATTT
60.382
41.667
0.59
0.00
40.24
1.40
2339
2557
8.677148
TTACTTGGGATTTATTGCTGATAGTC
57.323
34.615
0.00
0.00
0.00
2.59
2346
2564
6.701841
GGATTTATTGCTGATAGTCTTCACGA
59.298
38.462
0.00
0.00
0.00
4.35
2347
2565
7.386299
GGATTTATTGCTGATAGTCTTCACGAT
59.614
37.037
0.00
0.00
0.00
3.73
2348
2566
7.468922
TTTATTGCTGATAGTCTTCACGATG
57.531
36.000
0.00
0.00
0.00
3.84
2349
2567
4.718940
TTGCTGATAGTCTTCACGATGA
57.281
40.909
0.00
0.00
0.00
2.92
2350
2568
4.718940
TGCTGATAGTCTTCACGATGAA
57.281
40.909
0.00
0.00
34.79
2.57
2407
2626
6.873605
TGTTGTATGTCTCAGTTGGAATGTAG
59.126
38.462
0.00
0.00
0.00
2.74
2544
2765
2.977580
TCTCCTTGCCATCATCTATGCT
59.022
45.455
0.00
0.00
33.92
3.79
2912
3136
3.256383
TGTGTTATTGCTGCAATTGCTCT
59.744
39.130
30.35
10.88
42.66
4.09
3046
3270
3.134458
GGGAATTCTTGTGGCTATCGAG
58.866
50.000
5.23
0.00
0.00
4.04
3211
3437
3.149981
TGGATTTGTATTGTTCACGGCA
58.850
40.909
0.00
0.00
0.00
5.69
3271
3497
5.124936
TGCACATTTCATCTCCTCATTTCTG
59.875
40.000
0.00
0.00
0.00
3.02
3321
3547
5.508280
TTGGCCTGGTTGTTACTACTATT
57.492
39.130
3.32
0.00
0.00
1.73
3328
3554
6.313905
CCTGGTTGTTACTACTATTGCTCTTG
59.686
42.308
0.00
0.00
0.00
3.02
3405
3646
6.432162
ACTTGCATTCATTCATGTTAGTGACT
59.568
34.615
0.00
0.00
0.00
3.41
3563
3805
2.875296
ACAACTTTCCTGCATGGCTTA
58.125
42.857
0.00
0.00
35.26
3.09
3564
3806
2.821969
ACAACTTTCCTGCATGGCTTAG
59.178
45.455
0.00
0.00
35.26
2.18
3602
3844
8.738645
AATTTACTCCTACTATTTTGCAGAGG
57.261
34.615
0.00
0.00
0.00
3.69
3607
3849
6.174720
TCCTACTATTTTGCAGAGGGTATG
57.825
41.667
0.00
0.00
0.00
2.39
3609
3851
3.206150
ACTATTTTGCAGAGGGTATGCG
58.794
45.455
0.00
0.00
46.87
4.73
3649
3891
2.093235
GGTGAAGCCTAGCAATGAGACT
60.093
50.000
0.00
0.00
0.00
3.24
3724
3966
3.181501
ACACAAAGTTGACGGTGAATGTG
60.182
43.478
9.86
9.86
41.86
3.21
3735
3977
0.598065
GTGAATGTGGGTGAACTGCC
59.402
55.000
0.00
0.00
0.00
4.85
3741
3983
2.149383
TGGGTGAACTGCCTCTGCT
61.149
57.895
0.00
0.00
38.71
4.24
3870
4112
0.398318
GGTACCAGATCCCATGCCTC
59.602
60.000
7.15
0.00
0.00
4.70
3881
4123
0.680618
CCATGCCTCCAAAACTTGCA
59.319
50.000
0.00
0.00
36.23
4.08
3903
4145
2.887568
GTCTCCTGCCGATGTGCG
60.888
66.667
0.00
0.00
40.47
5.34
3906
4148
1.522355
CTCCTGCCGATGTGCGAAT
60.522
57.895
0.00
0.00
44.57
3.34
3972
4214
6.325596
GGTCAAAGATGAAAGCATTTAGGAC
58.674
40.000
0.00
0.00
39.27
3.85
4130
4372
1.961277
CACCTGGTGCACCGACTTC
60.961
63.158
30.07
6.48
39.43
3.01
4140
4382
1.734465
GCACCGACTTCAATCTTCAGG
59.266
52.381
0.00
0.00
0.00
3.86
4388
4632
3.126171
TCGTGCAAATCCAAGTTTATCCG
59.874
43.478
0.00
0.00
0.00
4.18
4399
4643
5.296780
TCCAAGTTTATCCGAGCAATTCATC
59.703
40.000
0.00
0.00
0.00
2.92
4429
4673
2.949447
AGGTCCAAAATGAGCAACTGT
58.051
42.857
0.00
0.00
35.23
3.55
4505
4749
8.196378
ACACAATCCCCTACTCTAAATAGATC
57.804
38.462
0.00
0.00
0.00
2.75
4560
4804
7.320399
TCATTGTACTACACACTACAGGAATG
58.680
38.462
0.00
0.00
36.69
2.67
4573
4817
4.164822
ACAGGAATGCAAAACATCTTCG
57.835
40.909
0.00
0.00
38.34
3.79
4629
4873
1.919956
CTTGGCTTGCCTCTTGAGCG
61.920
60.000
13.18
0.00
37.29
5.03
4630
4874
3.130160
GGCTTGCCTCTTGAGCGG
61.130
66.667
4.11
0.00
37.29
5.52
4631
4875
2.359230
GCTTGCCTCTTGAGCGGT
60.359
61.111
0.00
0.00
0.00
5.68
4632
4876
1.968540
GCTTGCCTCTTGAGCGGTT
60.969
57.895
0.00
0.00
0.00
4.44
4633
4877
1.871772
CTTGCCTCTTGAGCGGTTG
59.128
57.895
0.00
0.00
0.00
3.77
4634
4878
0.603707
CTTGCCTCTTGAGCGGTTGA
60.604
55.000
0.00
0.00
0.00
3.18
4635
4879
0.603707
TTGCCTCTTGAGCGGTTGAG
60.604
55.000
0.00
0.00
0.00
3.02
4636
4880
2.394563
GCCTCTTGAGCGGTTGAGC
61.395
63.158
0.00
0.00
37.41
4.26
4690
4934
4.582656
TCCTGTCAAATGAACAAACCGAAT
59.417
37.500
0.00
0.00
0.00
3.34
4814
5058
1.211969
CGACGATCCAACGGTCAGT
59.788
57.895
0.00
0.00
37.61
3.41
4844
5088
1.271597
ACACTCCACAGGATTGCTTCC
60.272
52.381
3.61
0.00
45.85
3.46
4886
5130
7.329438
CTGTGAAACTGCATATGTCAAAAAG
57.671
36.000
4.29
0.00
38.04
2.27
4888
5132
6.917477
TGTGAAACTGCATATGTCAAAAAGTC
59.083
34.615
4.29
0.00
38.04
3.01
4890
5134
7.434897
GTGAAACTGCATATGTCAAAAAGTCAA
59.565
33.333
4.29
0.00
0.00
3.18
4892
5136
7.878477
AACTGCATATGTCAAAAAGTCAATG
57.122
32.000
4.29
0.00
0.00
2.82
4893
5137
5.865552
ACTGCATATGTCAAAAAGTCAATGC
59.134
36.000
4.29
0.00
39.08
3.56
4894
5138
5.170021
TGCATATGTCAAAAAGTCAATGCC
58.830
37.500
4.29
0.00
38.11
4.40
4895
5139
5.170021
GCATATGTCAAAAAGTCAATGCCA
58.830
37.500
4.29
0.00
33.96
4.92
4906
5150
5.643379
AAGTCAATGCCATAAAATCACGT
57.357
34.783
0.00
0.00
0.00
4.49
4946
5190
2.294074
TGGGTGTGCTTTGTCAAGTAC
58.706
47.619
0.00
0.00
43.88
2.73
4947
5191
2.092646
TGGGTGTGCTTTGTCAAGTACT
60.093
45.455
5.06
0.00
43.93
2.73
4948
5192
2.548480
GGGTGTGCTTTGTCAAGTACTC
59.452
50.000
0.00
1.82
43.93
2.59
4949
5193
2.548480
GGTGTGCTTTGTCAAGTACTCC
59.452
50.000
0.00
8.05
45.83
3.85
4950
5194
2.548480
GTGTGCTTTGTCAAGTACTCCC
59.452
50.000
0.00
0.00
43.93
4.30
4951
5195
2.438021
TGTGCTTTGTCAAGTACTCCCT
59.562
45.455
0.00
0.00
43.93
4.20
4952
5196
3.067833
GTGCTTTGTCAAGTACTCCCTC
58.932
50.000
0.00
0.00
41.22
4.30
4953
5197
2.038557
TGCTTTGTCAAGTACTCCCTCC
59.961
50.000
0.00
0.00
31.86
4.30
4954
5198
2.931320
GCTTTGTCAAGTACTCCCTCCG
60.931
54.545
0.00
0.00
31.86
4.63
4955
5199
2.005370
TTGTCAAGTACTCCCTCCGT
57.995
50.000
0.00
0.00
0.00
4.69
4956
5200
2.005370
TGTCAAGTACTCCCTCCGTT
57.995
50.000
0.00
0.00
0.00
4.44
4957
5201
1.891150
TGTCAAGTACTCCCTCCGTTC
59.109
52.381
0.00
0.00
0.00
3.95
4958
5202
1.204231
GTCAAGTACTCCCTCCGTTCC
59.796
57.143
0.00
0.00
0.00
3.62
4959
5203
1.203087
TCAAGTACTCCCTCCGTTCCA
60.203
52.381
0.00
0.00
0.00
3.53
4960
5204
1.621814
CAAGTACTCCCTCCGTTCCAA
59.378
52.381
0.00
0.00
0.00
3.53
4961
5205
2.019807
AGTACTCCCTCCGTTCCAAA
57.980
50.000
0.00
0.00
0.00
3.28
4962
5206
2.332117
AGTACTCCCTCCGTTCCAAAA
58.668
47.619
0.00
0.00
0.00
2.44
4963
5207
2.910977
AGTACTCCCTCCGTTCCAAAAT
59.089
45.455
0.00
0.00
0.00
1.82
4964
5208
4.098894
AGTACTCCCTCCGTTCCAAAATA
58.901
43.478
0.00
0.00
0.00
1.40
4965
5209
3.629142
ACTCCCTCCGTTCCAAAATAG
57.371
47.619
0.00
0.00
0.00
1.73
4966
5210
3.178865
ACTCCCTCCGTTCCAAAATAGA
58.821
45.455
0.00
0.00
0.00
1.98
4967
5211
3.780850
ACTCCCTCCGTTCCAAAATAGAT
59.219
43.478
0.00
0.00
0.00
1.98
4968
5212
4.130118
CTCCCTCCGTTCCAAAATAGATG
58.870
47.826
0.00
0.00
0.00
2.90
4969
5213
3.778075
TCCCTCCGTTCCAAAATAGATGA
59.222
43.478
0.00
0.00
0.00
2.92
4970
5214
3.877508
CCCTCCGTTCCAAAATAGATGAC
59.122
47.826
0.00
0.00
0.00
3.06
4971
5215
4.384208
CCCTCCGTTCCAAAATAGATGACT
60.384
45.833
0.00
0.00
0.00
3.41
4972
5216
4.811557
CCTCCGTTCCAAAATAGATGACTC
59.188
45.833
0.00
0.00
0.00
3.36
4973
5217
5.414789
TCCGTTCCAAAATAGATGACTCA
57.585
39.130
0.00
0.00
0.00
3.41
4974
5218
5.800296
TCCGTTCCAAAATAGATGACTCAA
58.200
37.500
0.00
0.00
0.00
3.02
4975
5219
5.642063
TCCGTTCCAAAATAGATGACTCAAC
59.358
40.000
0.00
0.00
0.00
3.18
4976
5220
5.643777
CCGTTCCAAAATAGATGACTCAACT
59.356
40.000
0.00
0.00
0.00
3.16
4977
5221
6.149474
CCGTTCCAAAATAGATGACTCAACTT
59.851
38.462
0.00
0.00
0.00
2.66
4978
5222
7.308589
CCGTTCCAAAATAGATGACTCAACTTT
60.309
37.037
0.00
0.00
0.00
2.66
4979
5223
8.076178
CGTTCCAAAATAGATGACTCAACTTTT
58.924
33.333
0.00
0.00
0.00
2.27
4980
5224
9.185192
GTTCCAAAATAGATGACTCAACTTTTG
57.815
33.333
0.00
1.40
0.00
2.44
4981
5225
8.463930
TCCAAAATAGATGACTCAACTTTTGT
57.536
30.769
10.34
0.00
0.00
2.83
4982
5226
9.567776
TCCAAAATAGATGACTCAACTTTTGTA
57.432
29.630
10.34
0.00
0.00
2.41
4983
5227
9.612620
CCAAAATAGATGACTCAACTTTTGTAC
57.387
33.333
10.34
0.00
0.00
2.90
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
21
22
0.892755
AGTGTGGCCAAAGCATGATG
59.107
50.000
7.24
0.00
42.56
3.07
22
23
0.892755
CAGTGTGGCCAAAGCATGAT
59.107
50.000
7.24
0.00
42.56
2.45
151
152
1.688772
GTGCATCCAGATCAAGGCAT
58.311
50.000
5.59
0.00
33.43
4.40
310
311
8.223100
GTCAAAGACAATATTTTGCCATCAAAC
58.777
33.333
0.00
0.00
35.95
2.93
325
331
6.365970
AGTAGGATGACAGTCAAAGACAAT
57.634
37.500
7.50
0.00
34.60
2.71
355
361
9.929722
TCGAAGTTAATGCAACATTATTATGTC
57.070
29.630
0.00
0.00
44.14
3.06
393
399
2.401583
TGCCGACAAATGTCAGCTAT
57.598
45.000
19.28
0.00
45.88
2.97
426
432
2.093783
GGAGTTTGATACGGAAAGTGCG
59.906
50.000
0.00
0.00
37.19
5.34
569
576
5.453903
GGAGAAAGGGAAATGATCTCGATGA
60.454
44.000
0.00
0.00
37.89
2.92
610
617
5.153513
CCATAAACATTGGTCAAGACAACG
58.846
41.667
2.29
0.00
0.00
4.10
617
624
6.924913
TGATTTCCCATAAACATTGGTCAA
57.075
33.333
0.00
0.00
31.99
3.18
647
655
5.353394
TTGTTCTTCCTATATCCGCAACT
57.647
39.130
0.00
0.00
0.00
3.16
679
688
0.187361
ACAGGCAGCAAGGGGTTAAA
59.813
50.000
0.00
0.00
0.00
1.52
680
689
0.539438
CACAGGCAGCAAGGGGTTAA
60.539
55.000
0.00
0.00
0.00
2.01
694
703
0.744057
TATGGCATGCACGTCACAGG
60.744
55.000
21.36
0.00
0.00
4.00
720
729
3.568430
GGTGGTTGGTTTTGTCCTTCTAG
59.432
47.826
0.00
0.00
0.00
2.43
743
752
1.212616
CAGCGTTCCGATTCCAGATC
58.787
55.000
0.00
0.00
0.00
2.75
758
767
3.441572
ACAGAATTCAGGAAAATCCAGCG
59.558
43.478
8.44
0.00
39.61
5.18
760
769
5.474532
TCACACAGAATTCAGGAAAATCCAG
59.525
40.000
8.44
0.00
39.61
3.86
761
770
5.384336
TCACACAGAATTCAGGAAAATCCA
58.616
37.500
8.44
0.00
39.61
3.41
780
789
7.939782
TGAATTGCAGAAGAAACTAATTCACA
58.060
30.769
0.00
0.00
38.72
3.58
799
808
4.393371
TCAATGTGGCAAATGCATGAATTG
59.607
37.500
0.00
2.14
44.36
2.32
825
834
8.303876
TGCTTCACATATTTTCCTTCTTTTACC
58.696
33.333
0.00
0.00
0.00
2.85
836
845
3.429085
CTGGCGTGCTTCACATATTTTC
58.571
45.455
0.00
0.00
33.40
2.29
837
846
2.164219
CCTGGCGTGCTTCACATATTTT
59.836
45.455
0.00
0.00
33.40
1.82
969
978
0.541764
TTGCCTTTGGGATGGACCAC
60.542
55.000
0.00
0.00
41.03
4.16
973
986
1.691434
GTTGTTTGCCTTTGGGATGGA
59.309
47.619
0.00
0.00
33.58
3.41
988
1001
4.677779
GCATGAATAAATCCCTGCGTTGTT
60.678
41.667
0.00
0.00
0.00
2.83
1134
1147
4.744137
TGAAAACTCGAATGTTTGCAATGG
59.256
37.500
8.17
0.00
41.11
3.16
1280
1297
2.893489
GAGCAAGTTCTTGATTTGGGGT
59.107
45.455
15.52
0.00
0.00
4.95
1413
1485
6.373216
CGACTAAAATTTCAACCTATCCACCA
59.627
38.462
0.00
0.00
0.00
4.17
2019
2094
5.333952
GCAAAGAATGTGACACTTCTGAGAG
60.334
44.000
16.17
10.25
32.20
3.20
2032
2107
7.443272
TCTGTATGATATCCTGCAAAGAATGTG
59.557
37.037
0.00
0.00
0.00
3.21
2110
2185
4.384547
GCGGTCAAAACATTAAACCATGAC
59.615
41.667
0.00
0.00
36.01
3.06
2321
2396
6.701841
TCGTGAAGACTATCAGCAATAAATCC
59.298
38.462
0.00
0.00
0.00
3.01
2348
2566
1.129437
GAGCAGCCGATGAACAAGTTC
59.871
52.381
6.01
6.01
39.91
3.01
2349
2567
1.160137
GAGCAGCCGATGAACAAGTT
58.840
50.000
0.00
0.00
0.00
2.66
2350
2568
0.322975
AGAGCAGCCGATGAACAAGT
59.677
50.000
0.00
0.00
0.00
3.16
2407
2626
7.362662
TGAATTGATTCAACTAAGACAGCAAC
58.637
34.615
0.15
0.00
43.26
4.17
2544
2765
3.765381
TGAAAGAGGACATCCAAATGCA
58.235
40.909
0.00
0.00
38.89
3.96
2886
3110
4.905295
GCAATTGCAGCAATAACACAAAAC
59.095
37.500
25.36
0.23
41.59
2.43
2912
3136
4.649267
TTCCCCATGAATATTATCGGCA
57.351
40.909
0.00
0.00
0.00
5.69
3116
3342
4.611355
CGGCAAGTTACATCACTGAAGTTG
60.611
45.833
0.00
0.00
36.83
3.16
3211
3437
6.264067
GCACCCAAATGCTTATAAGAGATTCT
59.736
38.462
16.85
0.00
42.62
2.40
3321
3547
1.677576
CCAAGCAAGTTCACAAGAGCA
59.322
47.619
0.00
0.00
0.00
4.26
3328
3554
2.791158
CGTCACAACCAAGCAAGTTCAC
60.791
50.000
0.00
0.00
0.00
3.18
3405
3646
8.528643
TCTTATTGTTCTTCCTTCTATCACGAA
58.471
33.333
0.00
0.00
0.00
3.85
3542
3784
2.584835
AGCCATGCAGGAAAGTTGTA
57.415
45.000
0.00
0.00
41.22
2.41
3563
3805
9.668497
GTAGGAGTAAATTTTAAGGATGTCACT
57.332
33.333
0.00
0.00
0.00
3.41
3564
3806
9.668497
AGTAGGAGTAAATTTTAAGGATGTCAC
57.332
33.333
0.00
0.00
0.00
3.67
3602
3844
2.542595
CCCTCGAAAATACACGCATACC
59.457
50.000
0.00
0.00
0.00
2.73
3607
3849
0.096454
GTGCCCTCGAAAATACACGC
59.904
55.000
0.00
0.00
0.00
5.34
3609
3851
1.737793
CCTGTGCCCTCGAAAATACAC
59.262
52.381
0.00
0.00
0.00
2.90
3649
3891
6.660521
AGACAGTTGCCTTGAATGATTTCATA
59.339
34.615
0.00
0.00
41.38
2.15
3724
3966
1.673665
CAGCAGAGGCAGTTCACCC
60.674
63.158
0.00
0.00
44.61
4.61
3735
3977
6.373186
TGAATATGCAAGAATTCAGCAGAG
57.627
37.500
23.78
3.89
42.14
3.35
3741
3983
8.735692
TGTATGTCTGAATATGCAAGAATTCA
57.264
30.769
16.83
16.83
39.24
2.57
3870
4112
0.381801
AGACACGCTGCAAGTTTTGG
59.618
50.000
0.00
0.00
35.30
3.28
3881
4123
3.071206
ATCGGCAGGAGACACGCT
61.071
61.111
0.00
0.00
0.00
5.07
3903
4145
3.064207
TGTCTAACACGCTTCACCATTC
58.936
45.455
0.00
0.00
0.00
2.67
3906
4148
1.411246
ACTGTCTAACACGCTTCACCA
59.589
47.619
0.00
0.00
0.00
4.17
3972
4214
9.748708
TCAGATACAAATGAAAAACAAAAGAGG
57.251
29.630
0.00
0.00
0.00
3.69
4229
4471
9.483489
TTTCAGGTAGTACTGGATACTAATTGA
57.517
33.333
5.39
1.54
45.93
2.57
4292
4536
4.724279
AACCACCAGTTGTAATCTTCCT
57.276
40.909
0.00
0.00
37.29
3.36
4354
4598
3.332761
TTTGCACGACATGTTCTTCAC
57.667
42.857
0.00
0.00
0.00
3.18
4388
4632
6.529220
ACCTTACATCCTAGATGAATTGCTC
58.471
40.000
11.40
0.00
0.00
4.26
4399
4643
5.529060
GCTCATTTTGGACCTTACATCCTAG
59.471
44.000
0.00
0.00
37.13
3.02
4429
4673
8.826710
GGTGATTGATTAATCTTGTTCGATACA
58.173
33.333
16.24
0.00
42.56
2.29
4560
4804
5.034554
TCAGATTCACGAAGATGTTTTGC
57.965
39.130
0.00
0.00
0.00
3.68
4573
4817
4.998671
TCTGGATCAGACTCAGATTCAC
57.001
45.455
0.00
0.00
35.39
3.18
4629
4873
0.332972
AATTCAGGAGGGGCTCAACC
59.667
55.000
0.00
0.00
37.93
3.77
4630
4874
1.756430
GAATTCAGGAGGGGCTCAAC
58.244
55.000
0.00
0.00
31.08
3.18
4631
4875
0.253044
CGAATTCAGGAGGGGCTCAA
59.747
55.000
6.22
0.00
31.08
3.02
4632
4876
0.617535
TCGAATTCAGGAGGGGCTCA
60.618
55.000
6.22
0.00
31.08
4.26
4633
4877
0.761802
ATCGAATTCAGGAGGGGCTC
59.238
55.000
6.22
0.00
0.00
4.70
4634
4878
0.761802
GATCGAATTCAGGAGGGGCT
59.238
55.000
6.22
0.00
0.00
5.19
4635
4879
0.761802
AGATCGAATTCAGGAGGGGC
59.238
55.000
6.22
0.00
0.00
5.80
4636
4880
3.567478
AAAGATCGAATTCAGGAGGGG
57.433
47.619
6.22
0.00
0.00
4.79
4690
4934
9.325198
ACTATTACTTTGCGATCATGAATTGTA
57.675
29.630
0.00
0.00
0.00
2.41
4814
5058
4.878968
TCCTGTGGAGTGTATGGAGAATA
58.121
43.478
0.00
0.00
0.00
1.75
4844
5088
3.017323
CGCCGCAAAGATAGCTGG
58.983
61.111
0.00
0.00
0.00
4.85
4880
5124
7.095691
ACGTGATTTTATGGCATTGACTTTTTG
60.096
33.333
4.78
0.00
0.00
2.44
4886
5130
4.980590
TCACGTGATTTTATGGCATTGAC
58.019
39.130
15.76
0.00
0.00
3.18
4888
5132
5.512788
GTCTTCACGTGATTTTATGGCATTG
59.487
40.000
20.80
0.00
0.00
2.82
4890
5134
4.943705
AGTCTTCACGTGATTTTATGGCAT
59.056
37.500
20.80
4.88
0.00
4.40
4892
5136
4.946784
AGTCTTCACGTGATTTTATGGC
57.053
40.909
20.80
7.30
0.00
4.40
4893
5137
6.590292
ACACTAGTCTTCACGTGATTTTATGG
59.410
38.462
20.80
9.27
0.00
2.74
4894
5138
7.201444
GGACACTAGTCTTCACGTGATTTTATG
60.201
40.741
20.80
13.85
44.36
1.90
4895
5139
6.812160
GGACACTAGTCTTCACGTGATTTTAT
59.188
38.462
20.80
7.50
44.36
1.40
4906
5150
3.515502
CCAATCTGGGACACTAGTCTTCA
59.484
47.826
0.00
0.00
44.36
3.02
4946
5190
3.906720
TCTATTTTGGAACGGAGGGAG
57.093
47.619
0.00
0.00
0.00
4.30
4947
5191
3.778075
TCATCTATTTTGGAACGGAGGGA
59.222
43.478
0.00
0.00
0.00
4.20
4948
5192
3.877508
GTCATCTATTTTGGAACGGAGGG
59.122
47.826
0.00
0.00
0.00
4.30
4949
5193
4.770795
AGTCATCTATTTTGGAACGGAGG
58.229
43.478
0.00
0.00
0.00
4.30
4950
5194
5.419542
TGAGTCATCTATTTTGGAACGGAG
58.580
41.667
0.00
0.00
0.00
4.63
4951
5195
5.414789
TGAGTCATCTATTTTGGAACGGA
57.585
39.130
0.00
0.00
0.00
4.69
4952
5196
5.643777
AGTTGAGTCATCTATTTTGGAACGG
59.356
40.000
1.70
0.00
0.00
4.44
4953
5197
6.727824
AGTTGAGTCATCTATTTTGGAACG
57.272
37.500
1.70
0.00
0.00
3.95
4954
5198
9.185192
CAAAAGTTGAGTCATCTATTTTGGAAC
57.815
33.333
15.00
0.00
33.72
3.62
4955
5199
8.912988
ACAAAAGTTGAGTCATCTATTTTGGAA
58.087
29.630
21.47
0.00
37.26
3.53
4956
5200
8.463930
ACAAAAGTTGAGTCATCTATTTTGGA
57.536
30.769
21.47
0.00
37.26
3.53
4957
5201
9.612620
GTACAAAAGTTGAGTCATCTATTTTGG
57.387
33.333
21.47
8.90
37.26
3.28
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.