AutoCloner

Multiple sequence alignment - TraesCS7A01G297500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7A01G297500	chr7A	100.000	2733	0	0	1	2733	401301323	401298591	0.000000e+00	5048.0
1	TraesCS7A01G297500	chr5B	87.650	2745	290	29	17	2733	320346282	320349005	0.000000e+00	3145.0
2	TraesCS7A01G297500	chr5B	87.469	2043	196	34	17	2028	427372546	427370533	0.000000e+00	2300.0
3	TraesCS7A01G297500	chr4B	87.666	2716	256	37	17	2696	404338409	404335737	0.000000e+00	3086.0
4	TraesCS7A01G297500	chr4B	94.366	71	4	0	2662	2732	307457653	307457723	2.880000e-20	110.0
5	TraesCS7A01G297500	chr3A	87.308	2734	293	31	17	2733	185629194	185626498	0.000000e+00	3077.0
6	TraesCS7A01G297500	chr2B	87.176	2698	289	29	17	2691	387460335	387462998	0.000000e+00	3013.0
7	TraesCS7A01G297500	chr2B	88.007	1651	168	18	19	1662	462770799	462772426	0.000000e+00	1925.0
8	TraesCS7A01G297500	chr2B	86.635	1676	159	42	17	1662	568141679	568143319	0.000000e+00	1794.0
9	TraesCS7A01G297500	chr2B	85.755	1060	126	10	1639	2691	462772368	462773409	0.000000e+00	1098.0
10	TraesCS7A01G297500	chr6D	89.016	1830	168	23	27	1848	399158855	399157051	0.000000e+00	2235.0
11	TraesCS7A01G297500	chr6D	88.346	1536	141	14	1162	2691	154536025	154537528	0.000000e+00	1810.0
12	TraesCS7A01G297500	chr6D	89.127	607	48	6	2087	2691	399053161	399052571	0.000000e+00	739.0
13	TraesCS7A01G297500	chr4D	88.290	1836	172	20	17	1840	323805693	323803889	0.000000e+00	2159.0
14	TraesCS7A01G297500	chr4D	88.406	966	99	10	1743	2701	30655329	30654370	0.000000e+00	1151.0
15	TraesCS7A01G297500	chr6A	86.492	2021	199	28	17	2030	211094910	211092957	0.000000e+00	2152.0
16	TraesCS7A01G297500	chr6A	88.909	1127	104	16	1615	2733	422274682	422275795	0.000000e+00	1369.0
17	TraesCS7A01G297500	chr6A	86.667	630	65	10	2062	2675	610751063	610750437	0.000000e+00	680.0
18	TraesCS7A01G297500	chr3B	88.111	1657	172	12	1007	2657	467179112	467177475	0.000000e+00	1945.0
19	TraesCS7A01G297500	chr3B	98.611	72	1	0	2662	2733	467177438	467177367	7.940000e-26	128.0
20	TraesCS7A01G297500	chr7B	86.808	1607	176	19	426	2021	153377191	153378772	0.000000e+00	1760.0
21	TraesCS7A01G297500	chr6B	87.330	1547	167	11	489	2030	277750436	277748914	0.000000e+00	1744.0
22	TraesCS7A01G297500	chr1B	89.086	1356	134	10	1307	2657	164869494	164868148	0.000000e+00	1672.0
23	TraesCS7A01G297500	chr1B	86.826	1002	105	19	17	1004	164971229	164970241	0.000000e+00	1094.0
24	TraesCS7A01G297500	chr1B	93.750	80	5	0	2654	2733	164868091	164868012	1.330000e-23	121.0
25	TraesCS7A01G297500	chr5A	87.730	1361	119	21	17	1364	110412995	110411670	0.000000e+00	1544.0
26	TraesCS7A01G297500	chr2A	87.338	308	33	6	17	322	730246164	730245861	5.600000e-92	348.0
27	TraesCS7A01G297500	chr1D	100.000	33	0	0	2681	2713	18748264	18748296	8.170000e-06	62.1

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7A01G297500	chr7A	401298591	401301323	2732	True	5048.0	5048	100.000	1	2733	1	chr7A.!!$R1	2732
1	TraesCS7A01G297500	chr5B	320346282	320349005	2723	False	3145.0	3145	87.650	17	2733	1	chr5B.!!$F1	2716
2	TraesCS7A01G297500	chr5B	427370533	427372546	2013	True	2300.0	2300	87.469	17	2028	1	chr5B.!!$R1	2011
3	TraesCS7A01G297500	chr4B	404335737	404338409	2672	True	3086.0	3086	87.666	17	2696	1	chr4B.!!$R1	2679
4	TraesCS7A01G297500	chr3A	185626498	185629194	2696	True	3077.0	3077	87.308	17	2733	1	chr3A.!!$R1	2716
5	TraesCS7A01G297500	chr2B	387460335	387462998	2663	False	3013.0	3013	87.176	17	2691	1	chr2B.!!$F1	2674
6	TraesCS7A01G297500	chr2B	568141679	568143319	1640	False	1794.0	1794	86.635	17	1662	1	chr2B.!!$F2	1645
7	TraesCS7A01G297500	chr2B	462770799	462773409	2610	False	1511.5	1925	86.881	19	2691	2	chr2B.!!$F3	2672
8	TraesCS7A01G297500	chr6D	399157051	399158855	1804	True	2235.0	2235	89.016	27	1848	1	chr6D.!!$R2	1821
9	TraesCS7A01G297500	chr6D	154536025	154537528	1503	False	1810.0	1810	88.346	1162	2691	1	chr6D.!!$F1	1529
10	TraesCS7A01G297500	chr6D	399052571	399053161	590	True	739.0	739	89.127	2087	2691	1	chr6D.!!$R1	604
11	TraesCS7A01G297500	chr4D	323803889	323805693	1804	True	2159.0	2159	88.290	17	1840	1	chr4D.!!$R2	1823
12	TraesCS7A01G297500	chr4D	30654370	30655329	959	True	1151.0	1151	88.406	1743	2701	1	chr4D.!!$R1	958
13	TraesCS7A01G297500	chr6A	211092957	211094910	1953	True	2152.0	2152	86.492	17	2030	1	chr6A.!!$R1	2013
14	TraesCS7A01G297500	chr6A	422274682	422275795	1113	False	1369.0	1369	88.909	1615	2733	1	chr6A.!!$F1	1118
15	TraesCS7A01G297500	chr6A	610750437	610751063	626	True	680.0	680	86.667	2062	2675	1	chr6A.!!$R2	613
16	TraesCS7A01G297500	chr3B	467177367	467179112	1745	True	1036.5	1945	93.361	1007	2733	2	chr3B.!!$R1	1726
17	TraesCS7A01G297500	chr7B	153377191	153378772	1581	False	1760.0	1760	86.808	426	2021	1	chr7B.!!$F1	1595
18	TraesCS7A01G297500	chr6B	277748914	277750436	1522	True	1744.0	1744	87.330	489	2030	1	chr6B.!!$R1	1541
19	TraesCS7A01G297500	chr1B	164970241	164971229	988	True	1094.0	1094	86.826	17	1004	1	chr1B.!!$R1	987
20	TraesCS7A01G297500	chr1B	164868012	164869494	1482	True	896.5	1672	91.418	1307	2733	2	chr1B.!!$R2	1426
21	TraesCS7A01G297500	chr5A	110411670	110412995	1325	True	1544.0	1544	87.730	17	1364	1	chr5A.!!$R1	1347

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
866	964	0.106519	CCTTGGATCCTTGGGCGATT	60.107	55.0	14.23	0.0	0.0	3.34	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1822	1996	0.456628	TGCAATGCGATGGACCAATG	59.543	50.0	0.0	0.0	0.0	2.82	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
46	47	1.207329	CGAAGCTAGGGTAAACTGCCT	59.793	52.381	0.00	0.00	0.00	4.75
53	54	2.171003	AGGGTAAACTGCCTCATTTGC	58.829	47.619	0.00	0.00	0.00	3.68
67	69	6.591062	TGCCTCATTTGCAATCAAGTATTTTC	59.409	34.615	0.00	0.00	35.40	2.29
241	252	9.860898	AGCATGTTTAGAATATGAAAAAGGAAC	57.139	29.630	0.00	0.00	32.37	3.62
271	282	8.785329	AGTTCAGATCCTTCTTATTCACTTTC	57.215	34.615	0.00	0.00	0.00	2.62
379	406	4.152402	ACGTGAAAGCTCATATGTGTGAAC	59.848	41.667	1.90	0.00	33.05	3.18
474	504	9.514822	CATTGTGTGCAAGTTTTATATTTTTCG	57.485	29.630	0.00	0.00	38.10	3.46
668	724	3.622166	AACACTAGATAACCCCGTTGG	57.378	47.619	0.00	0.00	41.37	3.77
678	734	2.268076	CCCCGTTGGCCAACTCAAG	61.268	63.158	38.38	25.71	39.08	3.02
754	810	1.270094	CGATCATACCCTAGCGCCAAA	60.270	52.381	2.29	0.00	0.00	3.28
781	837	6.569737	ACATCCCTCAGATATGGTCTTCTAT	58.430	40.000	0.00	0.00	34.00	1.98
795	851	8.789767	ATGGTCTTCTATAAGGAATTCTGAGA	57.210	34.615	5.23	0.00	33.22	3.27
804	860	1.556911	GGAATTCTGAGACCAGGCTGA	59.443	52.381	17.94	0.00	40.76	4.26
848	904	4.162690	AAGGACGGCTCCGCATCC	62.163	66.667	8.41	8.89	42.22	3.51
866	964	0.106519	CCTTGGATCCTTGGGCGATT	60.107	55.000	14.23	0.00	0.00	3.34
907	1005	1.304381	ATTGGTTGTGCTCGCCCAT	60.304	52.632	0.00	0.00	0.00	4.00
920	1018	3.018019	CCCATCATTGCCTCCCCA	58.982	61.111	0.00	0.00	0.00	4.96
973	1122	0.250338	GACCAAAGGAGCCACTCGTT	60.250	55.000	0.00	0.00	39.76	3.85
1173	1339	2.354401	CGAGAGCAAGGCAGAGGGA	61.354	63.158	0.00	0.00	0.00	4.20
1196	1362	7.993183	GGGACAGGTTAGATCTCATGATTTTTA	59.007	37.037	0.00	0.00	32.19	1.52
1201	1367	9.790344	AGGTTAGATCTCATGATTTTTATCTGG	57.210	33.333	0.00	0.00	32.19	3.86
1227	1394	7.524532	GCCCTTTCTTTTTCTCTTTGCTTCTAT	60.525	37.037	0.00	0.00	0.00	1.98
1322	1489	1.831106	TGGCTGGATGACTACATTCGT	59.169	47.619	0.00	0.00	36.82	3.85
1335	1502	1.906574	ACATTCGTAGGCTTCAAGGGA	59.093	47.619	0.00	0.00	0.00	4.20
1381	1548	1.034292	GCAACCCAGGAGCTCAATCC	61.034	60.000	17.19	0.00	39.89	3.01
1390	1557	0.247736	GAGCTCAATCCACCGTCAGT	59.752	55.000	9.40	0.00	0.00	3.41
1436	1606	2.280628	GTTGCTTCGATAGTTGGGGAG	58.719	52.381	0.00	0.00	37.40	4.30
1455	1625	1.607612	GCGGATCTGAAGGGGGAAA	59.392	57.895	5.48	0.00	0.00	3.13
1484	1654	7.230027	AGAAGATGAACAAGAACTTGAGGAAT	58.770	34.615	19.35	8.41	42.93	3.01
1507	1677	5.733620	ATGATTCAATTGAACAAGCAGGT	57.266	34.783	22.71	4.71	36.80	4.00
1672	1842	5.769662	TCTGTGTTGCTTAATTTGTGGATCT	59.230	36.000	0.00	0.00	0.00	2.75
1704	1877	5.932303	TCTGTGTTGCTTAAACTATGTCTCC	59.068	40.000	0.00	0.00	39.70	3.71
1719	1892	6.947733	ACTATGTCTCCATCTCCATCTCTAAG	59.052	42.308	0.00	0.00	32.29	2.18
1732	1905	5.191921	TCCATCTCTAAGTCTCTGTAGGTGA	59.808	44.000	0.00	0.00	0.00	4.02
1812	1986	3.160269	AGGTCTTGAGCCCAAAATGAAG	58.840	45.455	0.00	0.00	0.00	3.02
1813	1987	3.157087	GGTCTTGAGCCCAAAATGAAGA	58.843	45.455	0.00	0.00	0.00	2.87
1822	1996	3.366781	GCCCAAAATGAAGACAAGCTCTC	60.367	47.826	0.00	0.00	0.00	3.20
1823	1997	3.822735	CCCAAAATGAAGACAAGCTCTCA	59.177	43.478	0.00	0.00	0.00	3.27
1828	2002	3.777106	TGAAGACAAGCTCTCATTGGT	57.223	42.857	0.00	0.00	31.76	3.67
1848	2022	1.672363	TCCATCGCATTGCATTGACTC	59.328	47.619	12.66	0.00	0.00	3.36
1903	2079	2.913054	TAGTGCATGCGCTGGCTCTC	62.913	60.000	37.50	14.82	40.82	3.20
1966	2162	4.036852	CACCTATAGAGATTGAGTGCACGA	59.963	45.833	12.01	1.82	0.00	4.35
1968	2164	6.004574	ACCTATAGAGATTGAGTGCACGATA	58.995	40.000	12.01	0.32	0.00	2.92
1969	2165	6.150307	ACCTATAGAGATTGAGTGCACGATAG	59.850	42.308	12.01	8.09	46.19	2.08
2065	2279	9.579768	AATTAGCGTTTTGTTTCATGCAATATA	57.420	25.926	0.00	0.00	0.00	0.86
2198	2435	7.336475	TCCTACAATATATATGGCCACCAAA	57.664	36.000	8.16	0.00	36.95	3.28
2206	2443	9.942850	AATATATATGGCCACCAAAAATTTAGC	57.057	29.630	8.16	0.00	36.95	3.09
2207	2444	5.955961	ATATGGCCACCAAAAATTTAGCT	57.044	34.783	8.16	0.00	36.95	3.32
2208	2445	4.639078	ATGGCCACCAAAAATTTAGCTT	57.361	36.364	8.16	0.00	36.95	3.74
2250	2490	4.933505	TTTCAACATCAACATGGCTCAA	57.066	36.364	0.00	0.00	33.82	3.02
2289	2531	5.623956	TCCTTTTTGACACCTCAACTAGA	57.376	39.130	0.00	0.00	36.06	2.43
2441	2686	2.028561	AGGGCCACCAACAATTCAAT	57.971	45.000	6.18	0.00	40.13	2.57
2443	2688	2.710471	AGGGCCACCAACAATTCAATTT	59.290	40.909	6.18	0.00	40.13	1.82
2444	2689	3.138098	AGGGCCACCAACAATTCAATTTT	59.862	39.130	6.18	0.00	40.13	1.82
2445	2690	3.888323	GGGCCACCAACAATTCAATTTTT	59.112	39.130	4.39	0.00	36.50	1.94
2493	2740	7.440198	TCAACATCAACATGGCTTATTTTTCA	58.560	30.769	0.00	0.00	33.82	2.69
2496	2743	7.669427	ACATCAACATGGCTTATTTTTCAAGA	58.331	30.769	0.00	0.00	33.82	3.02
2527	2774	6.488769	TCCTTTTTGACACCTCAACTAGTA	57.511	37.500	0.00	0.00	36.06	1.82
2592	2860	8.767436	AGGGCCAAAATACAAATATTACACAAT	58.233	29.630	6.18	0.00	30.42	2.71
2641	2909	3.901222	CCCTCCAACCATTTTTACAAGGT	59.099	43.478	0.00	0.00	35.47	3.50
2660	3020	2.479837	GTTAACCCCAAAACTTGCTGC	58.520	47.619	0.00	0.00	0.00	5.25

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
1	2	6.006275	AGCACATTTCCCATGACTATAAGT	57.994	37.500	0.00	0.00	0.00	2.24
2	3	5.471456	GGAGCACATTTCCCATGACTATAAG	59.529	44.000	0.00	0.00	0.00	1.73
4	5	4.503123	CGGAGCACATTTCCCATGACTATA	60.503	45.833	0.00	0.00	0.00	1.31
5	6	3.745480	CGGAGCACATTTCCCATGACTAT	60.745	47.826	0.00	0.00	0.00	2.12
6	7	2.419990	CGGAGCACATTTCCCATGACTA	60.420	50.000	0.00	0.00	0.00	2.59
7	8	1.679944	CGGAGCACATTTCCCATGACT	60.680	52.381	0.00	0.00	0.00	3.41
8	9	0.734889	CGGAGCACATTTCCCATGAC	59.265	55.000	0.00	0.00	0.00	3.06
9	10	0.617935	TCGGAGCACATTTCCCATGA	59.382	50.000	0.00	0.00	0.00	3.07
10	11	1.402968	CTTCGGAGCACATTTCCCATG	59.597	52.381	0.00	0.00	0.00	3.66
11	12	1.755179	CTTCGGAGCACATTTCCCAT	58.245	50.000	0.00	0.00	0.00	4.00
12	13	3.248043	CTTCGGAGCACATTTCCCA	57.752	52.632	0.00	0.00	0.00	4.37
46	47	7.814107	GTCCAGAAAATACTTGATTGCAAATGA	59.186	33.333	1.71	0.00	32.73	2.57
53	54	8.043710	AGAGTAGGTCCAGAAAATACTTGATTG	58.956	37.037	0.00	0.00	0.00	2.67
216	224	9.638239	TGTTCCTTTTTCATATTCTAAACATGC	57.362	29.630	0.00	0.00	0.00	4.06
241	252	9.092876	GTGAATAAGAAGGATCTGAACTTAGTG	57.907	37.037	0.00	0.00	35.59	2.74
306	317	5.540337	AGGAGGAAGGGTTTCTGAAAAATTC	59.460	40.000	4.09	9.00	33.68	2.17
316	327	3.157881	CAAGGAAAGGAGGAAGGGTTTC	58.842	50.000	0.00	0.00	0.00	2.78
324	351	3.580458	CAGAGAGTTCAAGGAAAGGAGGA	59.420	47.826	0.00	0.00	0.00	3.71
362	389	5.689383	AAAACGTTCACACATATGAGCTT	57.311	34.783	10.38	0.00	0.00	3.74
431	460	7.970061	GCACACAATGTTGTCTTATGTGATATT	59.030	33.333	14.04	0.00	43.01	1.28
434	463	5.241285	TGCACACAATGTTGTCTTATGTGAT	59.759	36.000	14.04	0.00	43.01	3.06
566	615	8.994170	TGTGAATCATCGTTTTATAAGACACAA	58.006	29.630	6.91	0.00	0.00	3.33
636	691	9.185680	GGGTTATCTAGTGTTTGACCAATATTT	57.814	33.333	0.00	0.00	0.00	1.40
668	724	1.276622	TAGAGGGGTCTTGAGTTGGC	58.723	55.000	0.00	0.00	0.00	4.52
678	734	1.600638	CGTGGGGTTTAGAGGGGTC	59.399	63.158	0.00	0.00	0.00	4.46
754	810	2.894126	GACCATATCTGAGGGATGTCGT	59.106	50.000	0.49	0.00	35.98	4.34
781	837	3.198635	CAGCCTGGTCTCAGAATTCCTTA	59.801	47.826	0.65	0.00	43.49	2.69
795	851	4.341783	GCCTGCACTCAGCCTGGT	62.342	66.667	0.00	0.00	44.83	4.00
848	904	1.312815	GAATCGCCCAAGGATCCAAG	58.687	55.000	15.82	5.43	0.00	3.61
907	1005	1.925255	AGAAGAATGGGGAGGCAATGA	59.075	47.619	0.00	0.00	0.00	2.57
973	1122	0.670546	CGCCGGAGAAGAAGAAGCAA	60.671	55.000	5.05	0.00	0.00	3.91
1036	1202	2.409870	GCAGTGCACCATACTGGGC	61.410	63.158	14.63	1.03	43.37	5.36
1048	1214	4.783621	TCGCTCCATGGGCAGTGC	62.784	66.667	20.72	6.55	0.00	4.40
1165	1331	2.364002	GAGATCTAACCTGTCCCTCTGC	59.636	54.545	0.00	0.00	0.00	4.26
1196	1362	4.394797	AGAGAAAAAGAAAGGGCCAGAT	57.605	40.909	6.18	0.00	0.00	2.90
1201	1367	4.327982	AGCAAAGAGAAAAAGAAAGGGC	57.672	40.909	0.00	0.00	0.00	5.19
1244	1411	7.630242	TGAAATCATGAACCCTAAATCTCAC	57.370	36.000	0.00	0.00	0.00	3.51
1322	1489	0.844661	TGCCCTTCCCTTGAAGCCTA	60.845	55.000	0.00	0.00	45.53	3.93
1335	1502	3.370103	CCATTGAATTGAAGCATGCCCTT	60.370	43.478	15.66	2.28	0.00	3.95
1341	1508	1.487558	GGCCCCATTGAATTGAAGCAT	59.512	47.619	0.00	0.00	0.00	3.79
1381	1548	2.732412	ATTCTGAGTGACTGACGGTG	57.268	50.000	0.00	0.00	0.00	4.94
1390	1557	6.603201	ACTTTCAAAGACCAAATTCTGAGTGA	59.397	34.615	3.49	0.00	0.00	3.41
1436	1606	1.921869	TTTCCCCCTTCAGATCCGCC	61.922	60.000	0.00	0.00	0.00	6.13
1455	1625	9.007901	CCTCAAGTTCTTGTTCATCTTCTTTAT	57.992	33.333	11.52	0.00	0.00	1.40
1484	1654	6.433716	TCACCTGCTTGTTCAATTGAATCATA	59.566	34.615	23.05	8.40	36.33	2.15
1599	1769	3.592898	AATCGTAGAGCACATGACACA	57.407	42.857	0.00	0.00	43.63	3.72
1672	1842	2.042686	AAGCAACACAGAGAGCACAA	57.957	45.000	0.00	0.00	0.00	3.33
1704	1877	6.430925	CCTACAGAGACTTAGAGATGGAGATG	59.569	46.154	0.00	0.00	0.00	2.90
1719	1892	7.116519	GTGTCAAAAACTATCACCTACAGAGAC	59.883	40.741	0.00	0.00	0.00	3.36
1793	1967	3.569701	TGTCTTCATTTTGGGCTCAAGAC	59.430	43.478	6.86	6.86	40.03	3.01
1799	1973	2.560105	GAGCTTGTCTTCATTTTGGGCT	59.440	45.455	0.00	0.00	0.00	5.19
1812	1986	2.479566	TGGACCAATGAGAGCTTGTC	57.520	50.000	0.00	0.00	0.00	3.18
1813	1987	2.679059	CGATGGACCAATGAGAGCTTGT	60.679	50.000	0.00	0.00	0.00	3.16
1822	1996	0.456628	TGCAATGCGATGGACCAATG	59.543	50.000	0.00	0.00	0.00	2.82
1823	1997	1.405872	ATGCAATGCGATGGACCAAT	58.594	45.000	0.00	0.00	0.00	3.16
1828	2002	1.672363	GAGTCAATGCAATGCGATGGA	59.328	47.619	9.60	1.39	0.00	3.41
1848	2022	1.826385	AATCTTTGTGGGCCTTCGAG	58.174	50.000	4.53	0.00	0.00	4.04
1939	2135	4.509600	GCACTCAATCTCTATAGGTGCAAC	59.490	45.833	17.72	0.00	45.04	4.17
2021	2235	4.385358	AATTGTTGACTTGTTGGTGGAC	57.615	40.909	0.00	0.00	0.00	4.02
2289	2531	1.076044	GGCATGGGTGGCTAATGGT	60.076	57.895	0.00	0.00	46.64	3.55
2443	2688	9.803315	GAAAAGAAGAAGGAGAAAAGCTAAAAA	57.197	29.630	0.00	0.00	0.00	1.94
2444	2689	8.966868	TGAAAAGAAGAAGGAGAAAAGCTAAAA	58.033	29.630	0.00	0.00	0.00	1.52
2445	2690	8.519799	TGAAAAGAAGAAGGAGAAAAGCTAAA	57.480	30.769	0.00	0.00	0.00	1.85
2493	2740	8.306313	AGGTGTCAAAAAGGAAACTAAATCTT	57.694	30.769	0.00	0.00	42.68	2.40
2496	2743	7.654022	TGAGGTGTCAAAAAGGAAACTAAAT	57.346	32.000	0.00	0.00	42.68	1.40
2641	2909	2.393646	AGCAGCAAGTTTTGGGGTTAA	58.606	42.857	0.00	0.00	0.00	2.01
2660	3020	7.928307	TGAAAGAGTATCCCTCAATGAAAAG	57.072	36.000	0.00	0.00	43.12	2.27

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.