Multiple sequence alignment - TraesCS7A01G297300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G297300 chr7A 100.000 4248 0 0 1 4248 399935386 399931139 0.000000e+00 7845.0
1 TraesCS7A01G297300 chr7A 93.333 150 10 0 3114 3263 399919917 399919768 5.530000e-54 222.0
2 TraesCS7A01G297300 chr7A 100.000 34 0 0 2905 2938 399919765 399919732 3.550000e-06 63.9
3 TraesCS7A01G297300 chr7B 91.783 1144 79 5 3112 4248 10992162 10993297 0.000000e+00 1578.0
4 TraesCS7A01G297300 chr7B 96.675 782 23 2 1931 2711 353630638 353631417 0.000000e+00 1297.0
5 TraesCS7A01G297300 chr7B 96.719 640 13 5 1257 1888 353629992 353630631 0.000000e+00 1059.0
6 TraesCS7A01G297300 chr7B 86.659 817 74 21 1 803 353628650 353629445 0.000000e+00 872.0
7 TraesCS7A01G297300 chr7B 94.529 329 11 5 832 1157 353629510 353629834 6.340000e-138 501.0
8 TraesCS7A01G297300 chr7B 93.805 226 7 4 2892 3111 353631409 353631633 2.450000e-87 333.0
9 TraesCS7A01G297300 chr7B 93.069 202 9 5 2710 2908 25669364 25669165 1.490000e-74 291.0
10 TraesCS7A01G297300 chr7B 94.624 186 10 0 2712 2897 739488786 739488601 5.370000e-74 289.0
11 TraesCS7A01G297300 chr7B 94.624 186 9 1 2712 2897 721399915 721399731 1.930000e-73 287.0
12 TraesCS7A01G297300 chr7B 97.541 122 3 0 1154 1275 353629859 353629980 4.300000e-50 209.0
13 TraesCS7A01G297300 chr7B 89.677 155 10 3 3114 3263 11011403 11011556 4.330000e-45 193.0
14 TraesCS7A01G297300 chr7B 92.453 53 1 3 2905 2957 353631638 353631687 5.890000e-09 73.1
15 TraesCS7A01G297300 chr6B 89.640 1139 111 2 3114 4246 129471024 129469887 0.000000e+00 1443.0
16 TraesCS7A01G297300 chr6A 93.444 961 57 1 3292 4246 607879346 607878386 0.000000e+00 1421.0
17 TraesCS7A01G297300 chr6A 89.796 147 14 1 3117 3263 607874571 607874426 2.020000e-43 187.0
18 TraesCS7A01G297300 chr6A 87.591 137 16 1 3117 3253 607879862 607879727 1.580000e-34 158.0
19 TraesCS7A01G297300 chr7D 96.675 782 23 2 1933 2711 351767288 351766507 0.000000e+00 1297.0
20 TraesCS7A01G297300 chr7D 88.551 987 55 21 332 1275 351768907 351767936 0.000000e+00 1144.0
21 TraesCS7A01G297300 chr7D 97.165 635 14 2 1257 1891 351767924 351767294 0.000000e+00 1070.0
22 TraesCS7A01G297300 chr7D 92.920 339 20 2 1 336 351814818 351814481 1.370000e-134 490.0
23 TraesCS7A01G297300 chr7D 97.093 172 5 0 2892 3063 351766515 351766344 1.490000e-74 291.0
24 TraesCS7A01G297300 chr7D 100.000 31 0 0 2904 2934 351766149 351766119 1.650000e-04 58.4
25 TraesCS7A01G297300 chr3B 86.579 1140 124 16 3114 4246 713674411 713675528 0.000000e+00 1230.0
26 TraesCS7A01G297300 chr3B 92.662 695 48 2 1939 2630 73076626 73077320 0.000000e+00 998.0
27 TraesCS7A01G297300 chr3B 92.230 695 51 2 1939 2630 73113714 73114408 0.000000e+00 981.0
28 TraesCS7A01G297300 chr3B 95.256 527 25 0 3342 3868 168136447 168135921 0.000000e+00 835.0
29 TraesCS7A01G297300 chr3B 80.362 1105 187 21 3154 4246 99694180 99693094 0.000000e+00 811.0
30 TraesCS7A01G297300 chr3B 80.178 1014 186 12 3241 4246 622016981 622015975 0.000000e+00 745.0
31 TraesCS7A01G297300 chr3B 78.160 902 177 14 3256 4147 739716032 739716923 1.330000e-154 556.0
32 TraesCS7A01G297300 chr3B 90.476 378 36 0 1257 1634 73113040 73113417 2.280000e-137 499.0
33 TraesCS7A01G297300 chr3B 90.212 378 37 0 1257 1634 73075952 73076329 1.060000e-135 494.0
34 TraesCS7A01G297300 chr3B 96.067 178 7 0 2712 2889 161459452 161459629 1.490000e-74 291.0
35 TraesCS7A01G297300 chr3B 69.428 1014 256 44 3252 4236 196678570 196679558 5.810000e-19 106.0
36 TraesCS7A01G297300 chrUn 92.980 698 46 1 1939 2633 32425207 32424510 0.000000e+00 1014.0
37 TraesCS7A01G297300 chrUn 93.094 695 45 1 1939 2630 288681415 288682109 0.000000e+00 1014.0
38 TraesCS7A01G297300 chrUn 90.212 378 37 0 1257 1634 381101600 381101977 1.060000e-135 494.0
39 TraesCS7A01G297300 chrUn 90.027 371 35 2 1257 1626 32425641 32425272 2.970000e-131 479.0
40 TraesCS7A01G297300 chrUn 90.027 371 35 2 1257 1626 288680981 288681350 2.970000e-131 479.0
41 TraesCS7A01G297300 chrUn 92.492 333 22 2 1939 2268 381102274 381102606 1.380000e-129 473.0
42 TraesCS7A01G297300 chrUn 91.597 119 10 0 1157 1275 32425771 32425653 9.450000e-37 165.0
43 TraesCS7A01G297300 chrUn 91.597 119 10 0 1157 1275 288680851 288680969 9.450000e-37 165.0
44 TraesCS7A01G297300 chrUn 85.119 168 13 1 1002 1157 32425978 32425811 1.220000e-35 161.0
45 TraesCS7A01G297300 chrUn 84.795 171 14 1 999 1157 288680641 288680811 1.220000e-35 161.0
46 TraesCS7A01G297300 chr3D 91.908 692 50 1 1939 2630 11026699 11027384 0.000000e+00 963.0
47 TraesCS7A01G297300 chr3D 91.351 370 32 0 1257 1626 11026246 11026615 1.360000e-139 507.0
48 TraesCS7A01G297300 chr3D 91.597 119 10 0 1157 1275 11026116 11026234 9.450000e-37 165.0
49 TraesCS7A01G297300 chr2B 81.324 1012 176 9 3242 4246 789456905 789457910 0.000000e+00 809.0
50 TraesCS7A01G297300 chr2B 96.133 181 6 1 2711 2891 405271874 405271695 1.160000e-75 294.0
51 TraesCS7A01G297300 chr4B 80.236 1017 181 16 3241 4246 586014453 586015460 0.000000e+00 747.0
52 TraesCS7A01G297300 chr4B 95.604 182 8 0 2711 2892 666660158 666660339 4.150000e-75 292.0
53 TraesCS7A01G297300 chr4B 95.604 182 6 1 2711 2892 666696784 666696963 1.490000e-74 291.0
54 TraesCS7A01G297300 chr5B 75.743 1010 219 19 3242 4238 157390328 157389332 6.390000e-133 484.0
55 TraesCS7A01G297300 chr5B 69.444 1008 268 37 3252 4237 246987647 246986658 7.460000e-23 119.0
56 TraesCS7A01G297300 chr5A 95.556 180 8 0 2712 2891 429509084 429509263 5.370000e-74 289.0
57 TraesCS7A01G297300 chr3A 95.580 181 7 1 2712 2892 735376021 735376200 5.370000e-74 289.0
58 TraesCS7A01G297300 chr4A 85.876 177 19 4 20 192 739699975 739699801 2.610000e-42 183.0
59 TraesCS7A01G297300 chr4A 85.311 177 20 4 20 192 742093845 742093671 1.210000e-40 178.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G297300 chr7A 399931139 399935386 4247 True 7845.000000 7845 100.000000 1 4248 1 chr7A.!!$R1 4247
1 TraesCS7A01G297300 chr7B 10992162 10993297 1135 False 1578.000000 1578 91.783000 3112 4248 1 chr7B.!!$F1 1136
2 TraesCS7A01G297300 chr7B 353628650 353631687 3037 False 620.585714 1297 94.054429 1 3111 7 chr7B.!!$F3 3110
3 TraesCS7A01G297300 chr6B 129469887 129471024 1137 True 1443.000000 1443 89.640000 3114 4246 1 chr6B.!!$R1 1132
4 TraesCS7A01G297300 chr6A 607874426 607879862 5436 True 588.666667 1421 90.277000 3117 4246 3 chr6A.!!$R1 1129
5 TraesCS7A01G297300 chr7D 351766119 351768907 2788 True 772.080000 1297 95.896800 332 3063 5 chr7D.!!$R2 2731
6 TraesCS7A01G297300 chr3B 713674411 713675528 1117 False 1230.000000 1230 86.579000 3114 4246 1 chr3B.!!$F3 1132
7 TraesCS7A01G297300 chr3B 168135921 168136447 526 True 835.000000 835 95.256000 3342 3868 1 chr3B.!!$R2 526
8 TraesCS7A01G297300 chr3B 99693094 99694180 1086 True 811.000000 811 80.362000 3154 4246 1 chr3B.!!$R1 1092
9 TraesCS7A01G297300 chr3B 73075952 73077320 1368 False 746.000000 998 91.437000 1257 2630 2 chr3B.!!$F5 1373
10 TraesCS7A01G297300 chr3B 622015975 622016981 1006 True 745.000000 745 80.178000 3241 4246 1 chr3B.!!$R3 1005
11 TraesCS7A01G297300 chr3B 73113040 73114408 1368 False 740.000000 981 91.353000 1257 2630 2 chr3B.!!$F6 1373
12 TraesCS7A01G297300 chr3B 739716032 739716923 891 False 556.000000 556 78.160000 3256 4147 1 chr3B.!!$F4 891
13 TraesCS7A01G297300 chrUn 381101600 381102606 1006 False 483.500000 494 91.352000 1257 2268 2 chrUn.!!$F2 1011
14 TraesCS7A01G297300 chrUn 32424510 32425978 1468 True 454.750000 1014 89.930750 1002 2633 4 chrUn.!!$R1 1631
15 TraesCS7A01G297300 chrUn 288680641 288682109 1468 False 454.750000 1014 89.878250 999 2630 4 chrUn.!!$F1 1631
16 TraesCS7A01G297300 chr3D 11026116 11027384 1268 False 545.000000 963 91.618667 1157 2630 3 chr3D.!!$F1 1473
17 TraesCS7A01G297300 chr2B 789456905 789457910 1005 False 809.000000 809 81.324000 3242 4246 1 chr2B.!!$F1 1004
18 TraesCS7A01G297300 chr4B 586014453 586015460 1007 False 747.000000 747 80.236000 3241 4246 1 chr4B.!!$F1 1005
19 TraesCS7A01G297300 chr5B 157389332 157390328 996 True 484.000000 484 75.743000 3242 4238 1 chr5B.!!$R1 996

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
786 813 0.249073 GCAGCGAGACGTACATCCAT 60.249 55.0 0.0 0.0 0.00 3.41 F
1485 1644 0.808125 CCGTTTGGCGATTCATGGAA 59.192 50.0 0.0 0.0 44.77 3.53 F
1919 2123 1.013596 CCATCGCGCCTTGTGATTTA 58.986 50.0 0.0 0.0 45.44 1.40 F
2811 3040 0.032217 TGATTTTCAGGGGGATGGGC 60.032 55.0 0.0 0.0 0.00 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2229 2455 1.133809 AGTTGCCCAGGTAAGCCTCA 61.134 55.0 0.00 0.0 44.97 3.86 R
2792 3021 0.032217 GCCCATCCCCCTGAAAATCA 60.032 55.0 0.00 0.0 0.00 2.57 R
2881 3110 0.178767 TCATGCTACTCGGCAATGCT 59.821 50.0 4.82 0.0 45.68 3.79 R
3979 4707 0.318441 CTGCTGAAACGGGACTCTCA 59.682 55.0 0.00 0.0 0.00 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 7.758076 CACGGTCTTGTATTAGATAGACACAAA 59.242 37.037 0.00 0.00 38.96 2.83
30 31 8.475639 ACGGTCTTGTATTAGATAGACACAAAT 58.524 33.333 0.00 0.00 38.96 2.32
33 34 9.046296 GTCTTGTATTAGATAGACACAAATGGG 57.954 37.037 0.00 0.00 37.53 4.00
40 41 6.345096 AGATAGACACAAATGGGTTTTTGG 57.655 37.500 0.00 0.00 40.20 3.28
41 42 5.838521 AGATAGACACAAATGGGTTTTTGGT 59.161 36.000 0.00 0.00 40.20 3.67
42 43 7.007723 AGATAGACACAAATGGGTTTTTGGTA 58.992 34.615 0.00 0.00 40.20 3.25
43 44 5.270893 AGACACAAATGGGTTTTTGGTAC 57.729 39.130 0.00 0.00 40.20 3.34
44 45 4.959839 AGACACAAATGGGTTTTTGGTACT 59.040 37.500 0.00 0.00 40.20 2.73
45 46 5.423931 AGACACAAATGGGTTTTTGGTACTT 59.576 36.000 0.00 0.00 40.20 2.24
142 143 0.679002 ATGTCATCACTGGCAGCACC 60.679 55.000 15.89 0.00 41.07 5.01
147 148 2.793160 ATCACTGGCAGCACCGACAG 62.793 60.000 15.89 2.36 43.94 3.51
151 152 3.286751 GGCAGCACCGACAGCAAA 61.287 61.111 0.00 0.00 0.00 3.68
157 158 1.888512 AGCACCGACAGCAAAAATGAT 59.111 42.857 0.00 0.00 0.00 2.45
160 161 2.030007 CACCGACAGCAAAAATGATGGT 60.030 45.455 0.00 0.00 31.87 3.55
163 164 3.305267 CCGACAGCAAAAATGATGGTCAA 60.305 43.478 0.00 0.00 0.00 3.18
168 169 5.011329 ACAGCAAAAATGATGGTCAACTCAT 59.989 36.000 0.00 0.00 33.59 2.90
173 174 4.978083 AATGATGGTCAACTCATGAAGC 57.022 40.909 0.00 0.00 40.50 3.86
174 175 2.349590 TGATGGTCAACTCATGAAGCG 58.650 47.619 0.00 0.00 40.50 4.68
177 178 2.416747 TGGTCAACTCATGAAGCGAAG 58.583 47.619 0.00 0.00 40.50 3.79
183 184 4.449068 TCAACTCATGAAGCGAAGAAGAAC 59.551 41.667 0.00 0.00 34.30 3.01
186 187 4.212214 ACTCATGAAGCGAAGAAGAACAAC 59.788 41.667 0.00 0.00 0.00 3.32
187 188 4.126437 TCATGAAGCGAAGAAGAACAACA 58.874 39.130 0.00 0.00 0.00 3.33
188 189 4.574421 TCATGAAGCGAAGAAGAACAACAA 59.426 37.500 0.00 0.00 0.00 2.83
189 190 4.273005 TGAAGCGAAGAAGAACAACAAC 57.727 40.909 0.00 0.00 0.00 3.32
190 191 3.687212 TGAAGCGAAGAAGAACAACAACA 59.313 39.130 0.00 0.00 0.00 3.33
191 192 4.155099 TGAAGCGAAGAAGAACAACAACAA 59.845 37.500 0.00 0.00 0.00 2.83
192 193 4.900635 AGCGAAGAAGAACAACAACAAT 57.099 36.364 0.00 0.00 0.00 2.71
193 194 4.601019 AGCGAAGAAGAACAACAACAATG 58.399 39.130 0.00 0.00 0.00 2.82
194 195 4.335315 AGCGAAGAAGAACAACAACAATGA 59.665 37.500 0.00 0.00 0.00 2.57
195 196 4.437820 GCGAAGAAGAACAACAACAATGAC 59.562 41.667 0.00 0.00 0.00 3.06
196 197 5.730568 GCGAAGAAGAACAACAACAATGACT 60.731 40.000 0.00 0.00 0.00 3.41
197 198 6.258160 CGAAGAAGAACAACAACAATGACTT 58.742 36.000 0.00 0.00 0.00 3.01
198 199 6.747280 CGAAGAAGAACAACAACAATGACTTT 59.253 34.615 0.00 0.00 0.00 2.66
199 200 7.273381 CGAAGAAGAACAACAACAATGACTTTT 59.727 33.333 0.00 0.00 0.00 2.27
200 201 8.831715 AAGAAGAACAACAACAATGACTTTTT 57.168 26.923 0.00 0.00 0.00 1.94
227 228 5.216648 CGGGGTAACAACAACAGTAATTTG 58.783 41.667 0.00 0.00 39.74 2.32
230 231 6.183360 GGGGTAACAACAACAGTAATTTGTCA 60.183 38.462 0.00 0.00 36.13 3.58
325 341 0.594540 TGCAACGCACAAGCAATCAC 60.595 50.000 0.00 0.00 42.27 3.06
330 346 1.270839 ACGCACAAGCAATCACCTAGT 60.271 47.619 0.00 0.00 42.27 2.57
344 360 7.011482 GCAATCACCTAGTCTATCGAAAACATT 59.989 37.037 0.00 0.00 0.00 2.71
345 361 9.529325 CAATCACCTAGTCTATCGAAAACATTA 57.471 33.333 0.00 0.00 0.00 1.90
346 362 9.530633 AATCACCTAGTCTATCGAAAACATTAC 57.469 33.333 0.00 0.00 0.00 1.89
347 363 8.058667 TCACCTAGTCTATCGAAAACATTACA 57.941 34.615 0.00 0.00 0.00 2.41
389 409 0.459237 CTCTGTCGGGTCTGCATGAC 60.459 60.000 0.00 7.52 44.63 3.06
436 459 1.219935 GTAACCCATCTCCGGCGTT 59.780 57.895 6.01 0.00 0.00 4.84
440 463 2.398554 CCCATCTCCGGCGTTGTTG 61.399 63.158 6.01 3.47 0.00 3.33
443 466 3.622060 ATCTCCGGCGTTGTTGGGG 62.622 63.158 6.01 0.00 0.00 4.96
534 559 3.695830 AGCTGTCGTTTTTATCCTCCA 57.304 42.857 0.00 0.00 0.00 3.86
586 612 4.394729 CCTTTGGAGCAAACCTTGTACTA 58.605 43.478 0.00 0.00 0.00 1.82
587 613 4.215613 CCTTTGGAGCAAACCTTGTACTAC 59.784 45.833 0.00 0.00 0.00 2.73
588 614 4.699925 TTGGAGCAAACCTTGTACTACT 57.300 40.909 0.00 0.00 0.00 2.57
629 655 6.552629 GCTGGTAGCTTCCAAAGTAAATAAC 58.447 40.000 13.60 0.00 38.45 1.89
713 740 3.384146 TGTACGTACACCAGAAACCAGAA 59.616 43.478 24.10 0.00 0.00 3.02
714 741 3.107642 ACGTACACCAGAAACCAGAAG 57.892 47.619 0.00 0.00 0.00 2.85
715 742 2.696707 ACGTACACCAGAAACCAGAAGA 59.303 45.455 0.00 0.00 0.00 2.87
786 813 0.249073 GCAGCGAGACGTACATCCAT 60.249 55.000 0.00 0.00 0.00 3.41
790 817 2.120232 GCGAGACGTACATCCATCAAG 58.880 52.381 0.00 0.00 0.00 3.02
814 891 4.917998 GCAGCATACATATATATCGGACCG 59.082 45.833 7.84 7.84 0.00 4.79
957 1034 2.427320 CGCCCATCCATCGGTCAT 59.573 61.111 0.00 0.00 0.00 3.06
1075 1152 4.436998 GTCGCAGTCTCCCGGGTG 62.437 72.222 22.86 19.64 0.00 4.61
1485 1644 0.808125 CCGTTTGGCGATTCATGGAA 59.192 50.000 0.00 0.00 44.77 3.53
1494 1653 1.685148 GATTCATGGAAGCCTGGTCC 58.315 55.000 0.00 0.00 35.55 4.46
1883 2087 2.626743 GCCTGCCATGAATGAGCTTATT 59.373 45.455 2.91 2.91 0.00 1.40
1896 2100 5.641777 TGAGCTTATTCATCGTGAATTCG 57.358 39.130 15.21 9.76 44.03 3.34
1898 2102 5.232202 TGAGCTTATTCATCGTGAATTCGTC 59.768 40.000 15.21 9.78 44.03 4.20
1919 2123 1.013596 CCATCGCGCCTTGTGATTTA 58.986 50.000 0.00 0.00 45.44 1.40
1920 2124 1.268032 CCATCGCGCCTTGTGATTTAC 60.268 52.381 0.00 0.00 45.44 2.01
1921 2125 1.014352 ATCGCGCCTTGTGATTTACC 58.986 50.000 0.00 0.00 45.44 2.85
1922 2126 1.022451 TCGCGCCTTGTGATTTACCC 61.022 55.000 0.00 0.00 30.48 3.69
1923 2127 1.427819 GCGCCTTGTGATTTACCCG 59.572 57.895 0.00 0.00 0.00 5.28
1924 2128 1.303091 GCGCCTTGTGATTTACCCGT 61.303 55.000 0.00 0.00 0.00 5.28
1925 2129 2.008045 GCGCCTTGTGATTTACCCGTA 61.008 52.381 0.00 0.00 0.00 4.02
1926 2130 2.557317 CGCCTTGTGATTTACCCGTAT 58.443 47.619 0.00 0.00 0.00 3.06
1927 2131 2.940410 CGCCTTGTGATTTACCCGTATT 59.060 45.455 0.00 0.00 0.00 1.89
1928 2132 3.375922 CGCCTTGTGATTTACCCGTATTT 59.624 43.478 0.00 0.00 0.00 1.40
1929 2133 4.668289 GCCTTGTGATTTACCCGTATTTG 58.332 43.478 0.00 0.00 0.00 2.32
2007 2230 1.653115 CCGGACGTTCTATCTCGGG 59.347 63.158 0.00 0.00 34.54 5.14
2229 2455 3.374402 CTCGACCCGCCTGTCAGT 61.374 66.667 0.00 0.00 34.88 3.41
2538 2764 1.807165 CGACGGTGAGATGGTGCTG 60.807 63.158 0.00 0.00 0.00 4.41
2544 2770 1.913262 TGAGATGGTGCTGGTCGGT 60.913 57.895 0.00 0.00 0.00 4.69
2583 2809 1.675641 GCAAGCCTCCGTGTCCATT 60.676 57.895 0.00 0.00 0.00 3.16
2633 2859 1.069823 CTGCATCCTCGGCTAGACAAT 59.930 52.381 0.00 0.00 0.00 2.71
2711 2940 9.398170 CCAATATAAATACAACAAGTAGCATGC 57.602 33.333 10.51 10.51 35.85 4.06
2712 2941 9.949174 CAATATAAATACAACAAGTAGCATGCA 57.051 29.630 21.98 2.77 35.85 3.96
2716 2945 9.703892 ATAAATACAACAAGTAGCATGCAAAAA 57.296 25.926 21.98 0.00 35.85 1.94
2717 2946 8.606040 AAATACAACAAGTAGCATGCAAAAAT 57.394 26.923 21.98 0.16 35.85 1.82
2718 2947 5.910637 ACAACAAGTAGCATGCAAAAATG 57.089 34.783 21.98 13.89 0.00 2.32
2731 2960 7.815398 CATGCAAAAATGCTAGACATACAAA 57.185 32.000 0.00 0.00 38.34 2.83
2732 2961 7.891782 CATGCAAAAATGCTAGACATACAAAG 58.108 34.615 0.00 0.00 38.34 2.77
2733 2962 7.213216 TGCAAAAATGCTAGACATACAAAGA 57.787 32.000 0.00 0.00 38.34 2.52
2734 2963 7.083858 TGCAAAAATGCTAGACATACAAAGAC 58.916 34.615 0.00 0.00 38.34 3.01
2735 2964 7.040478 TGCAAAAATGCTAGACATACAAAGACT 60.040 33.333 0.00 0.00 38.34 3.24
2736 2965 7.809806 GCAAAAATGCTAGACATACAAAGACTT 59.190 33.333 0.00 0.00 38.34 3.01
2739 2968 9.502091 AAAATGCTAGACATACAAAGACTTACA 57.498 29.630 0.00 0.00 38.34 2.41
2740 2969 8.480643 AATGCTAGACATACAAAGACTTACAC 57.519 34.615 0.00 0.00 38.34 2.90
2741 2970 6.090783 TGCTAGACATACAAAGACTTACACG 58.909 40.000 0.00 0.00 0.00 4.49
2742 2971 5.004535 GCTAGACATACAAAGACTTACACGC 59.995 44.000 0.00 0.00 0.00 5.34
2743 2972 5.135508 AGACATACAAAGACTTACACGCT 57.864 39.130 0.00 0.00 0.00 5.07
2744 2973 5.539048 AGACATACAAAGACTTACACGCTT 58.461 37.500 0.00 0.00 0.00 4.68
2745 2974 5.989777 AGACATACAAAGACTTACACGCTTT 59.010 36.000 0.00 0.00 32.46 3.51
2746 2975 6.482308 AGACATACAAAGACTTACACGCTTTT 59.518 34.615 0.00 0.00 30.00 2.27
2747 2976 7.654520 AGACATACAAAGACTTACACGCTTTTA 59.345 33.333 0.00 0.00 30.00 1.52
2748 2977 7.570161 ACATACAAAGACTTACACGCTTTTAC 58.430 34.615 0.00 0.00 30.00 2.01
2749 2978 7.225145 ACATACAAAGACTTACACGCTTTTACA 59.775 33.333 0.00 0.00 30.00 2.41
2750 2979 5.803118 ACAAAGACTTACACGCTTTTACAC 58.197 37.500 0.00 0.00 30.00 2.90
2751 2980 4.703899 AAGACTTACACGCTTTTACACG 57.296 40.909 0.00 0.00 0.00 4.49
2752 2981 2.473984 AGACTTACACGCTTTTACACGC 59.526 45.455 0.00 0.00 0.00 5.34
2753 2982 2.473984 GACTTACACGCTTTTACACGCT 59.526 45.455 0.00 0.00 0.00 5.07
2754 2983 2.473984 ACTTACACGCTTTTACACGCTC 59.526 45.455 0.00 0.00 0.00 5.03
2755 2984 2.427232 TACACGCTTTTACACGCTCT 57.573 45.000 0.00 0.00 0.00 4.09
2756 2985 1.578583 ACACGCTTTTACACGCTCTT 58.421 45.000 0.00 0.00 0.00 2.85
2757 2986 2.746269 ACACGCTTTTACACGCTCTTA 58.254 42.857 0.00 0.00 0.00 2.10
2758 2987 2.473984 ACACGCTTTTACACGCTCTTAC 59.526 45.455 0.00 0.00 0.00 2.34
2759 2988 2.064014 ACGCTTTTACACGCTCTTACC 58.936 47.619 0.00 0.00 0.00 2.85
2760 2989 2.063266 CGCTTTTACACGCTCTTACCA 58.937 47.619 0.00 0.00 0.00 3.25
2761 2990 2.671396 CGCTTTTACACGCTCTTACCAT 59.329 45.455 0.00 0.00 0.00 3.55
2762 2991 3.241995 CGCTTTTACACGCTCTTACCATC 60.242 47.826 0.00 0.00 0.00 3.51
2763 2992 3.933332 GCTTTTACACGCTCTTACCATCT 59.067 43.478 0.00 0.00 0.00 2.90
2764 2993 5.107133 GCTTTTACACGCTCTTACCATCTA 58.893 41.667 0.00 0.00 0.00 1.98
2765 2994 5.579511 GCTTTTACACGCTCTTACCATCTAA 59.420 40.000 0.00 0.00 0.00 2.10
2766 2995 6.455246 GCTTTTACACGCTCTTACCATCTAAC 60.455 42.308 0.00 0.00 0.00 2.34
2767 2996 5.648178 TTACACGCTCTTACCATCTAACA 57.352 39.130 0.00 0.00 0.00 2.41
2768 2997 4.530710 ACACGCTCTTACCATCTAACAA 57.469 40.909 0.00 0.00 0.00 2.83
2769 2998 4.243270 ACACGCTCTTACCATCTAACAAC 58.757 43.478 0.00 0.00 0.00 3.32
2770 2999 3.617263 CACGCTCTTACCATCTAACAACC 59.383 47.826 0.00 0.00 0.00 3.77
2771 3000 3.259876 ACGCTCTTACCATCTAACAACCA 59.740 43.478 0.00 0.00 0.00 3.67
2772 3001 4.250464 CGCTCTTACCATCTAACAACCAA 58.750 43.478 0.00 0.00 0.00 3.67
2773 3002 4.876107 CGCTCTTACCATCTAACAACCAAT 59.124 41.667 0.00 0.00 0.00 3.16
2774 3003 5.006746 CGCTCTTACCATCTAACAACCAATC 59.993 44.000 0.00 0.00 0.00 2.67
2775 3004 5.880332 GCTCTTACCATCTAACAACCAATCA 59.120 40.000 0.00 0.00 0.00 2.57
2776 3005 6.183360 GCTCTTACCATCTAACAACCAATCAC 60.183 42.308 0.00 0.00 0.00 3.06
2777 3006 6.774673 TCTTACCATCTAACAACCAATCACA 58.225 36.000 0.00 0.00 0.00 3.58
2778 3007 7.227873 TCTTACCATCTAACAACCAATCACAA 58.772 34.615 0.00 0.00 0.00 3.33
2779 3008 7.721842 TCTTACCATCTAACAACCAATCACAAA 59.278 33.333 0.00 0.00 0.00 2.83
2780 3009 6.084326 ACCATCTAACAACCAATCACAAAC 57.916 37.500 0.00 0.00 0.00 2.93
2781 3010 5.010617 ACCATCTAACAACCAATCACAAACC 59.989 40.000 0.00 0.00 0.00 3.27
2782 3011 5.243730 CCATCTAACAACCAATCACAAACCT 59.756 40.000 0.00 0.00 0.00 3.50
2783 3012 6.239289 CCATCTAACAACCAATCACAAACCTT 60.239 38.462 0.00 0.00 0.00 3.50
2784 3013 6.783708 TCTAACAACCAATCACAAACCTTT 57.216 33.333 0.00 0.00 0.00 3.11
2785 3014 6.801575 TCTAACAACCAATCACAAACCTTTC 58.198 36.000 0.00 0.00 0.00 2.62
2786 3015 4.400529 ACAACCAATCACAAACCTTTCC 57.599 40.909 0.00 0.00 0.00 3.13
2787 3016 3.133901 ACAACCAATCACAAACCTTTCCC 59.866 43.478 0.00 0.00 0.00 3.97
2788 3017 2.325484 ACCAATCACAAACCTTTCCCC 58.675 47.619 0.00 0.00 0.00 4.81
2789 3018 1.623311 CCAATCACAAACCTTTCCCCC 59.377 52.381 0.00 0.00 0.00 5.40
2810 3039 2.077687 CTGATTTTCAGGGGGATGGG 57.922 55.000 0.00 0.00 40.71 4.00
2811 3040 0.032217 TGATTTTCAGGGGGATGGGC 60.032 55.000 0.00 0.00 0.00 5.36
2812 3041 0.760567 GATTTTCAGGGGGATGGGCC 60.761 60.000 0.00 0.00 0.00 5.80
2813 3042 2.588029 ATTTTCAGGGGGATGGGCCG 62.588 60.000 0.00 0.00 37.63 6.13
2827 3056 4.008933 GCCGCCCCGCTCATCTAT 62.009 66.667 0.00 0.00 0.00 1.98
2828 3057 2.743718 CCGCCCCGCTCATCTATT 59.256 61.111 0.00 0.00 0.00 1.73
2829 3058 1.669115 CCGCCCCGCTCATCTATTG 60.669 63.158 0.00 0.00 0.00 1.90
2830 3059 1.367471 CGCCCCGCTCATCTATTGA 59.633 57.895 0.00 0.00 0.00 2.57
2831 3060 0.946221 CGCCCCGCTCATCTATTGAC 60.946 60.000 0.00 0.00 0.00 3.18
2832 3061 0.603975 GCCCCGCTCATCTATTGACC 60.604 60.000 0.00 0.00 0.00 4.02
2833 3062 0.758734 CCCCGCTCATCTATTGACCA 59.241 55.000 0.00 0.00 0.00 4.02
2834 3063 1.140852 CCCCGCTCATCTATTGACCAA 59.859 52.381 0.00 0.00 0.00 3.67
2835 3064 2.224621 CCCCGCTCATCTATTGACCAAT 60.225 50.000 0.64 0.64 34.93 3.16
2836 3065 3.070018 CCCGCTCATCTATTGACCAATC 58.930 50.000 0.00 0.00 32.50 2.67
2837 3066 3.494924 CCCGCTCATCTATTGACCAATCA 60.495 47.826 0.00 0.00 32.50 2.57
2849 3078 5.975693 TTGACCAATCAAGGTTAACCATC 57.024 39.130 26.26 10.34 43.38 3.51
2850 3079 4.340617 TGACCAATCAAGGTTAACCATCC 58.659 43.478 26.26 0.00 43.38 3.51
2851 3080 4.044065 TGACCAATCAAGGTTAACCATCCT 59.956 41.667 26.26 2.59 43.38 3.24
2852 3081 4.344104 ACCAATCAAGGTTAACCATCCTG 58.656 43.478 26.26 16.38 39.34 3.86
2853 3082 4.202673 ACCAATCAAGGTTAACCATCCTGT 60.203 41.667 26.26 11.13 39.34 4.00
2854 3083 5.014755 ACCAATCAAGGTTAACCATCCTGTA 59.985 40.000 26.26 5.02 39.34 2.74
2855 3084 5.949354 CCAATCAAGGTTAACCATCCTGTAA 59.051 40.000 26.26 3.53 38.89 2.41
2856 3085 6.435904 CCAATCAAGGTTAACCATCCTGTAAA 59.564 38.462 26.26 3.51 38.89 2.01
2857 3086 7.039363 CCAATCAAGGTTAACCATCCTGTAAAA 60.039 37.037 26.26 3.19 38.89 1.52
2858 3087 7.703058 ATCAAGGTTAACCATCCTGTAAAAG 57.297 36.000 26.26 0.00 38.89 2.27
2859 3088 5.475564 TCAAGGTTAACCATCCTGTAAAAGC 59.524 40.000 26.26 0.00 38.89 3.51
2860 3089 4.341487 AGGTTAACCATCCTGTAAAAGCC 58.659 43.478 26.26 0.00 38.89 4.35
2861 3090 4.044191 AGGTTAACCATCCTGTAAAAGCCT 59.956 41.667 26.26 0.00 38.89 4.58
2862 3091 4.157840 GGTTAACCATCCTGTAAAAGCCTG 59.842 45.833 20.12 0.00 35.64 4.85
2863 3092 3.525800 AACCATCCTGTAAAAGCCTGT 57.474 42.857 0.00 0.00 0.00 4.00
2864 3093 4.650972 AACCATCCTGTAAAAGCCTGTA 57.349 40.909 0.00 0.00 0.00 2.74
2865 3094 4.650972 ACCATCCTGTAAAAGCCTGTAA 57.349 40.909 0.00 0.00 0.00 2.41
2866 3095 4.332828 ACCATCCTGTAAAAGCCTGTAAC 58.667 43.478 0.00 0.00 0.00 2.50
2867 3096 4.042934 ACCATCCTGTAAAAGCCTGTAACT 59.957 41.667 0.00 0.00 0.00 2.24
2868 3097 4.636206 CCATCCTGTAAAAGCCTGTAACTC 59.364 45.833 0.00 0.00 0.00 3.01
2869 3098 3.921677 TCCTGTAAAAGCCTGTAACTCG 58.078 45.455 0.00 0.00 0.00 4.18
2870 3099 3.322828 TCCTGTAAAAGCCTGTAACTCGT 59.677 43.478 0.00 0.00 0.00 4.18
2871 3100 4.062991 CCTGTAAAAGCCTGTAACTCGTT 58.937 43.478 0.00 0.00 0.00 3.85
2872 3101 4.514066 CCTGTAAAAGCCTGTAACTCGTTT 59.486 41.667 0.00 0.00 0.00 3.60
2873 3102 5.412526 TGTAAAAGCCTGTAACTCGTTTG 57.587 39.130 0.00 0.00 0.00 2.93
2874 3103 4.877251 TGTAAAAGCCTGTAACTCGTTTGT 59.123 37.500 0.00 0.00 0.00 2.83
2875 3104 6.047870 TGTAAAAGCCTGTAACTCGTTTGTA 58.952 36.000 0.00 0.00 0.00 2.41
2876 3105 5.413969 AAAAGCCTGTAACTCGTTTGTAC 57.586 39.130 0.00 0.00 0.00 2.90
2877 3106 3.738830 AGCCTGTAACTCGTTTGTACA 57.261 42.857 0.00 0.00 0.00 2.90
2878 3107 4.267349 AGCCTGTAACTCGTTTGTACAT 57.733 40.909 0.00 0.00 0.00 2.29
2879 3108 3.994392 AGCCTGTAACTCGTTTGTACATG 59.006 43.478 0.00 0.00 0.00 3.21
2880 3109 3.744426 GCCTGTAACTCGTTTGTACATGT 59.256 43.478 2.69 2.69 0.00 3.21
2881 3110 4.925054 GCCTGTAACTCGTTTGTACATGTA 59.075 41.667 0.08 0.08 0.00 2.29
2882 3111 5.061808 GCCTGTAACTCGTTTGTACATGTAG 59.938 44.000 5.62 0.00 0.00 2.74
2883 3112 5.061808 CCTGTAACTCGTTTGTACATGTAGC 59.938 44.000 5.62 2.31 0.00 3.58
2884 3113 5.530712 TGTAACTCGTTTGTACATGTAGCA 58.469 37.500 5.62 5.01 0.00 3.49
2885 3114 6.160684 TGTAACTCGTTTGTACATGTAGCAT 58.839 36.000 5.62 0.00 0.00 3.79
2886 3115 6.647481 TGTAACTCGTTTGTACATGTAGCATT 59.353 34.615 5.62 1.51 0.00 3.56
2887 3116 5.530519 ACTCGTTTGTACATGTAGCATTG 57.469 39.130 5.62 0.00 0.00 2.82
2888 3117 4.142902 ACTCGTTTGTACATGTAGCATTGC 60.143 41.667 5.62 0.00 0.00 3.56
2889 3118 3.126171 TCGTTTGTACATGTAGCATTGCC 59.874 43.478 5.62 0.00 0.00 4.52
2890 3119 3.425404 GTTTGTACATGTAGCATTGCCG 58.575 45.455 5.62 0.00 0.00 5.69
2891 3120 2.682155 TGTACATGTAGCATTGCCGA 57.318 45.000 5.62 0.00 0.00 5.54
2892 3121 2.549926 TGTACATGTAGCATTGCCGAG 58.450 47.619 5.62 0.00 0.00 4.63
2893 3122 2.093711 TGTACATGTAGCATTGCCGAGT 60.094 45.455 5.62 0.39 0.00 4.18
2894 3123 2.979814 ACATGTAGCATTGCCGAGTA 57.020 45.000 4.70 0.00 0.00 2.59
2895 3124 2.826428 ACATGTAGCATTGCCGAGTAG 58.174 47.619 4.70 0.00 0.00 2.57
2896 3125 1.528586 CATGTAGCATTGCCGAGTAGC 59.471 52.381 4.70 0.00 0.00 3.58
2897 3126 0.534873 TGTAGCATTGCCGAGTAGCA 59.465 50.000 4.70 0.00 42.17 3.49
2938 3167 6.720309 TCTGTTTCCATTCCTGTAATGATCA 58.280 36.000 0.00 0.00 46.81 2.92
2939 3168 6.825213 TCTGTTTCCATTCCTGTAATGATCAG 59.175 38.462 0.09 0.00 46.81 2.90
3008 3237 6.549364 TGAATTGTCACAAGAAAGTAACCCAT 59.451 34.615 0.00 0.00 0.00 4.00
3066 3301 6.425114 GCTGATCTCGGCTTCTAATTTTATCA 59.575 38.462 3.72 0.00 44.58 2.15
3086 3469 4.832248 TCAATGCTGGTTTACTAGTCCTG 58.168 43.478 0.00 0.00 0.00 3.86
3131 3514 9.787435 TTAGGATGTGTAAAACTGATAGTGTTT 57.213 29.630 0.00 0.00 39.03 2.83
3139 3522 9.607988 TGTAAAACTGATAGTGTTTCTTTCTCA 57.392 29.630 0.00 0.00 36.72 3.27
3154 3537 7.730364 TTCTTTCTCAAATGAGGTACAGAAC 57.270 36.000 10.37 0.00 42.30 3.01
3332 4058 2.264480 CGATGAAGGGTGTCGCCA 59.736 61.111 4.48 0.00 39.65 5.69
3414 4140 5.091261 ACCTCACCTAATGCTACTTTCTG 57.909 43.478 0.00 0.00 0.00 3.02
3646 4372 1.016130 CAGTGAGCTGCCGTTTCGAT 61.016 55.000 0.00 0.00 35.77 3.59
3716 4442 1.211969 CGACGAGTGTCCGGACATT 59.788 57.895 38.11 34.25 43.97 2.71
3741 4467 1.202348 CCAGTCTGCATCAGAGTACGG 60.202 57.143 4.07 0.02 41.60 4.02
3764 4492 5.221461 GGTGTGAGAGTAGTTGGAGAAGAAA 60.221 44.000 0.00 0.00 0.00 2.52
3773 4501 7.379750 AGTAGTTGGAGAAGAAACAGTGATAC 58.620 38.462 0.00 0.00 0.00 2.24
3816 4544 3.305813 CCTTTGAGGTAGCGTAGAACACA 60.306 47.826 0.00 0.00 0.00 3.72
3979 4707 1.069427 GAGCTGCTCGCCATCAGAT 59.931 57.895 14.68 0.00 40.39 2.90
4135 4869 0.984230 GGTGGAGGTGACCAAGATCA 59.016 55.000 3.63 0.00 41.87 2.92
4149 4883 5.748402 ACCAAGATCAGTCATGCAGAATTA 58.252 37.500 0.00 0.00 0.00 1.40
4188 4922 7.400339 AGAGATTATGTGGGTCAGAAAAGAGTA 59.600 37.037 0.00 0.00 30.90 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 6.096673 ACCAAAAACCCATTTGTGTCTATC 57.903 37.500 0.00 0.00 38.37 2.08
29 30 7.663043 TTTACAAGAAGTACCAAAAACCCAT 57.337 32.000 0.00 0.00 30.91 4.00
30 31 7.396623 TCTTTTACAAGAAGTACCAAAAACCCA 59.603 33.333 0.00 0.00 35.99 4.51
38 39 6.354130 AGCAGTTCTTTTACAAGAAGTACCA 58.646 36.000 10.62 0.00 46.79 3.25
40 41 7.478520 TGAGCAGTTCTTTTACAAGAAGTAC 57.521 36.000 10.62 6.40 46.79 2.73
41 42 8.677148 ATTGAGCAGTTCTTTTACAAGAAGTA 57.323 30.769 10.62 0.00 46.79 2.24
44 45 7.807977 AGATTGAGCAGTTCTTTTACAAGAA 57.192 32.000 0.00 0.00 45.20 2.52
45 46 9.507329 AATAGATTGAGCAGTTCTTTTACAAGA 57.493 29.630 0.00 0.00 37.24 3.02
108 109 7.065443 CAGTGATGACATCGCCATAATATCAAT 59.935 37.037 22.38 0.05 40.59 2.57
118 119 1.450134 GCCAGTGATGACATCGCCA 60.450 57.895 22.38 0.00 40.59 5.69
142 143 3.557577 TGACCATCATTTTTGCTGTCG 57.442 42.857 0.00 0.00 0.00 4.35
147 148 5.472148 TCATGAGTTGACCATCATTTTTGC 58.528 37.500 0.00 0.00 33.91 3.68
151 152 4.142534 CGCTTCATGAGTTGACCATCATTT 60.143 41.667 0.00 0.00 33.91 2.32
157 158 2.037121 TCTTCGCTTCATGAGTTGACCA 59.963 45.455 0.00 0.00 32.84 4.02
160 161 4.257267 TCTTCTTCGCTTCATGAGTTGA 57.743 40.909 0.00 0.00 0.00 3.18
163 164 3.995199 TGTTCTTCTTCGCTTCATGAGT 58.005 40.909 0.00 0.00 0.00 3.41
168 169 3.687212 TGTTGTTGTTCTTCTTCGCTTCA 59.313 39.130 0.00 0.00 0.00 3.02
173 174 5.810525 AGTCATTGTTGTTGTTCTTCTTCG 58.189 37.500 0.00 0.00 0.00 3.79
174 175 8.466086 AAAAGTCATTGTTGTTGTTCTTCTTC 57.534 30.769 0.00 0.00 0.00 2.87
198 199 2.232941 TGTTGTTGTTACCCCGCAAAAA 59.767 40.909 0.00 0.00 0.00 1.94
199 200 1.822990 TGTTGTTGTTACCCCGCAAAA 59.177 42.857 0.00 0.00 0.00 2.44
200 201 1.405821 CTGTTGTTGTTACCCCGCAAA 59.594 47.619 0.00 0.00 0.00 3.68
201 202 1.025812 CTGTTGTTGTTACCCCGCAA 58.974 50.000 0.00 0.00 0.00 4.85
202 203 0.107116 ACTGTTGTTGTTACCCCGCA 60.107 50.000 0.00 0.00 0.00 5.69
203 204 1.881591 TACTGTTGTTGTTACCCCGC 58.118 50.000 0.00 0.00 0.00 6.13
204 205 5.216648 CAAATTACTGTTGTTGTTACCCCG 58.783 41.667 0.00 0.00 0.00 5.73
205 206 6.151663 ACAAATTACTGTTGTTGTTACCCC 57.848 37.500 0.00 0.00 35.70 4.95
206 207 6.797454 TGACAAATTACTGTTGTTGTTACCC 58.203 36.000 5.34 0.00 39.29 3.69
207 208 7.477494 ACTGACAAATTACTGTTGTTGTTACC 58.523 34.615 5.34 0.00 39.29 2.85
208 209 8.905103 AACTGACAAATTACTGTTGTTGTTAC 57.095 30.769 5.34 0.00 39.29 2.50
212 213 9.781834 TTTCTAACTGACAAATTACTGTTGTTG 57.218 29.630 10.33 0.00 39.29 3.33
307 323 1.277495 GGTGATTGCTTGTGCGTTGC 61.277 55.000 0.00 0.00 43.34 4.17
312 328 2.704572 AGACTAGGTGATTGCTTGTGC 58.295 47.619 0.00 0.00 40.20 4.57
325 341 9.186323 CTCATGTAATGTTTTCGATAGACTAGG 57.814 37.037 0.00 0.00 46.51 3.02
330 346 5.462068 CGCCTCATGTAATGTTTTCGATAGA 59.538 40.000 0.00 0.00 46.80 1.98
344 360 3.006940 GTCCAACATTTCGCCTCATGTA 58.993 45.455 0.00 0.00 33.11 2.29
345 361 1.812571 GTCCAACATTTCGCCTCATGT 59.187 47.619 0.00 0.00 35.00 3.21
346 362 2.086869 AGTCCAACATTTCGCCTCATG 58.913 47.619 0.00 0.00 0.00 3.07
347 363 2.496899 AGTCCAACATTTCGCCTCAT 57.503 45.000 0.00 0.00 0.00 2.90
389 409 0.460987 GCTTCCGTCAGGGATCACAG 60.461 60.000 0.00 0.00 46.62 3.66
413 436 1.968493 GCCGGAGATGGGTTACTGATA 59.032 52.381 5.05 0.00 0.00 2.15
420 443 2.046314 CAACGCCGGAGATGGGTT 60.046 61.111 13.83 0.00 39.17 4.11
436 459 2.846193 CTTCTCGAAAAGACCCCAACA 58.154 47.619 0.00 0.00 32.27 3.33
440 463 1.740025 CATGCTTCTCGAAAAGACCCC 59.260 52.381 1.77 0.00 32.27 4.95
443 466 3.754188 ATGCATGCTTCTCGAAAAGAC 57.246 42.857 20.33 0.00 32.27 3.01
559 585 1.063266 AGGTTTGCTCCAAAGGGACAA 60.063 47.619 0.00 0.00 38.64 3.18
586 612 1.949847 CTGGTTCATCGCCGGAGAGT 61.950 60.000 14.81 0.00 34.35 3.24
587 613 1.227089 CTGGTTCATCGCCGGAGAG 60.227 63.158 14.81 6.19 34.35 3.20
588 614 2.892640 CTGGTTCATCGCCGGAGA 59.107 61.111 11.31 11.31 34.35 3.71
629 655 2.614520 CTCATTCAGCTCTGCTCATTGG 59.385 50.000 0.00 0.00 36.40 3.16
713 740 3.617045 GCAGAACTGAAGTGAGATGCTCT 60.617 47.826 5.97 0.00 0.00 4.09
714 741 2.672381 GCAGAACTGAAGTGAGATGCTC 59.328 50.000 5.97 0.00 0.00 4.26
715 742 2.302445 AGCAGAACTGAAGTGAGATGCT 59.698 45.455 5.97 6.28 37.91 3.79
786 813 6.323739 TCCGATATATATGTATGCTGCCTTGA 59.676 38.462 0.00 0.00 0.00 3.02
790 817 5.230942 GGTCCGATATATATGTATGCTGCC 58.769 45.833 0.00 0.00 0.00 4.85
821 898 4.501071 GGCCTACGATCAGAACAAAACTA 58.499 43.478 0.00 0.00 0.00 2.24
957 1034 0.409876 AGAGCTAGGGTGGTGTGAGA 59.590 55.000 0.00 0.00 0.00 3.27
1093 1170 1.164041 AAAGTTTCACGTGCTCCCCG 61.164 55.000 11.67 0.00 0.00 5.73
1095 1172 0.591659 GGAAAGTTTCACGTGCTCCC 59.408 55.000 17.16 4.25 0.00 4.30
1098 1175 2.919228 AGAAGGAAAGTTTCACGTGCT 58.081 42.857 17.16 0.00 0.00 4.40
1240 1369 2.968206 GGTCTCCACCGCGTACTT 59.032 61.111 4.92 0.00 31.06 2.24
1485 1644 3.394836 GAAGCGGAGGACCAGGCT 61.395 66.667 0.00 0.00 35.07 4.58
1550 1709 3.866582 GCTGGATGACCTCCCGGG 61.867 72.222 16.85 16.85 44.23 5.73
1832 2036 2.890474 CCCACGACTATGCACGGC 60.890 66.667 0.00 0.00 0.00 5.68
1896 2100 2.742372 ACAAGGCGCGATGGTGAC 60.742 61.111 12.10 0.00 0.00 3.67
1898 2102 1.647545 AATCACAAGGCGCGATGGTG 61.648 55.000 12.10 11.92 0.00 4.17
1906 2110 2.012937 TACGGGTAAATCACAAGGCG 57.987 50.000 0.00 0.00 0.00 5.52
1919 2123 4.186159 CGAGTGGTAAATCAAATACGGGT 58.814 43.478 0.00 0.00 0.00 5.28
1920 2124 3.001939 GCGAGTGGTAAATCAAATACGGG 59.998 47.826 0.00 0.00 0.00 5.28
1921 2125 3.619483 TGCGAGTGGTAAATCAAATACGG 59.381 43.478 0.00 0.00 0.00 4.02
1922 2126 4.260212 CCTGCGAGTGGTAAATCAAATACG 60.260 45.833 0.00 0.00 0.00 3.06
1923 2127 4.634443 ACCTGCGAGTGGTAAATCAAATAC 59.366 41.667 0.00 0.00 35.80 1.89
1924 2128 4.634004 CACCTGCGAGTGGTAAATCAAATA 59.366 41.667 0.00 0.00 35.80 1.40
1925 2129 3.440173 CACCTGCGAGTGGTAAATCAAAT 59.560 43.478 0.00 0.00 35.80 2.32
1926 2130 2.811431 CACCTGCGAGTGGTAAATCAAA 59.189 45.455 0.00 0.00 35.80 2.69
1927 2131 2.037902 TCACCTGCGAGTGGTAAATCAA 59.962 45.455 6.13 0.00 38.34 2.57
1928 2132 1.621317 TCACCTGCGAGTGGTAAATCA 59.379 47.619 6.13 0.00 38.34 2.57
1929 2133 2.271800 CTCACCTGCGAGTGGTAAATC 58.728 52.381 6.13 0.00 38.34 2.17
2229 2455 1.133809 AGTTGCCCAGGTAAGCCTCA 61.134 55.000 0.00 0.00 44.97 3.86
2340 2566 3.785859 GCCTCCATCTCCGCCACA 61.786 66.667 0.00 0.00 0.00 4.17
2508 2734 4.185413 CCGTCGTGGTTCATGGAG 57.815 61.111 0.00 0.00 0.00 3.86
2526 2752 1.913262 ACCGACCAGCACCATCTCA 60.913 57.895 0.00 0.00 0.00 3.27
2709 2938 7.040478 AGTCTTTGTATGTCTAGCATTTTTGCA 60.040 33.333 5.22 0.00 38.94 4.08
2710 2939 7.308435 AGTCTTTGTATGTCTAGCATTTTTGC 58.692 34.615 5.22 0.00 38.94 3.68
2713 2942 9.502091 TGTAAGTCTTTGTATGTCTAGCATTTT 57.498 29.630 5.22 0.00 38.94 1.82
2714 2943 8.936864 GTGTAAGTCTTTGTATGTCTAGCATTT 58.063 33.333 5.22 0.00 38.94 2.32
2715 2944 7.275779 CGTGTAAGTCTTTGTATGTCTAGCATT 59.724 37.037 5.22 0.00 38.94 3.56
2716 2945 6.752351 CGTGTAAGTCTTTGTATGTCTAGCAT 59.248 38.462 0.00 5.25 41.42 3.79
2717 2946 6.090783 CGTGTAAGTCTTTGTATGTCTAGCA 58.909 40.000 0.00 0.00 0.00 3.49
2718 2947 5.004535 GCGTGTAAGTCTTTGTATGTCTAGC 59.995 44.000 0.00 0.00 0.00 3.42
2719 2948 6.323266 AGCGTGTAAGTCTTTGTATGTCTAG 58.677 40.000 0.00 0.00 0.00 2.43
2720 2949 6.263516 AGCGTGTAAGTCTTTGTATGTCTA 57.736 37.500 0.00 0.00 0.00 2.59
2721 2950 5.135508 AGCGTGTAAGTCTTTGTATGTCT 57.864 39.130 0.00 0.00 0.00 3.41
2722 2951 5.840940 AAGCGTGTAAGTCTTTGTATGTC 57.159 39.130 0.00 0.00 0.00 3.06
2723 2952 6.613755 AAAAGCGTGTAAGTCTTTGTATGT 57.386 33.333 0.00 0.00 31.21 2.29
2724 2953 7.529519 GTGTAAAAGCGTGTAAGTCTTTGTATG 59.470 37.037 0.00 0.00 31.21 2.39
2725 2954 7.568134 CGTGTAAAAGCGTGTAAGTCTTTGTAT 60.568 37.037 0.00 0.00 31.21 2.29
2726 2955 6.291743 CGTGTAAAAGCGTGTAAGTCTTTGTA 60.292 38.462 0.00 0.00 31.21 2.41
2727 2956 5.501252 CGTGTAAAAGCGTGTAAGTCTTTGT 60.501 40.000 0.00 0.00 31.21 2.83
2728 2957 4.896238 CGTGTAAAAGCGTGTAAGTCTTTG 59.104 41.667 0.00 0.00 31.21 2.77
2729 2958 4.551410 GCGTGTAAAAGCGTGTAAGTCTTT 60.551 41.667 0.00 0.00 0.00 2.52
2730 2959 3.060070 GCGTGTAAAAGCGTGTAAGTCTT 60.060 43.478 0.00 0.00 0.00 3.01
2731 2960 2.473984 GCGTGTAAAAGCGTGTAAGTCT 59.526 45.455 0.00 0.00 0.00 3.24
2732 2961 2.473984 AGCGTGTAAAAGCGTGTAAGTC 59.526 45.455 0.00 0.00 38.61 3.01
2733 2962 2.473984 GAGCGTGTAAAAGCGTGTAAGT 59.526 45.455 0.00 0.00 38.61 2.24
2734 2963 2.729882 AGAGCGTGTAAAAGCGTGTAAG 59.270 45.455 0.00 0.00 38.61 2.34
2735 2964 2.746269 AGAGCGTGTAAAAGCGTGTAA 58.254 42.857 0.00 0.00 38.61 2.41
2736 2965 2.427232 AGAGCGTGTAAAAGCGTGTA 57.573 45.000 0.00 0.00 38.61 2.90
2737 2966 1.578583 AAGAGCGTGTAAAAGCGTGT 58.421 45.000 0.00 0.00 38.61 4.49
2738 2967 2.159881 GGTAAGAGCGTGTAAAAGCGTG 60.160 50.000 0.00 0.00 38.61 5.34
2739 2968 2.064014 GGTAAGAGCGTGTAAAAGCGT 58.936 47.619 0.00 0.00 38.61 5.07
2740 2969 2.063266 TGGTAAGAGCGTGTAAAAGCG 58.937 47.619 0.00 0.00 38.61 4.68
2741 2970 3.933332 AGATGGTAAGAGCGTGTAAAAGC 59.067 43.478 0.00 0.00 0.00 3.51
2742 2971 6.588756 TGTTAGATGGTAAGAGCGTGTAAAAG 59.411 38.462 0.00 0.00 0.00 2.27
2743 2972 6.457355 TGTTAGATGGTAAGAGCGTGTAAAA 58.543 36.000 0.00 0.00 0.00 1.52
2744 2973 6.028146 TGTTAGATGGTAAGAGCGTGTAAA 57.972 37.500 0.00 0.00 0.00 2.01
2745 2974 5.648178 TGTTAGATGGTAAGAGCGTGTAA 57.352 39.130 0.00 0.00 0.00 2.41
2746 2975 5.404946 GTTGTTAGATGGTAAGAGCGTGTA 58.595 41.667 0.00 0.00 0.00 2.90
2747 2976 4.243270 GTTGTTAGATGGTAAGAGCGTGT 58.757 43.478 0.00 0.00 0.00 4.49
2748 2977 3.617263 GGTTGTTAGATGGTAAGAGCGTG 59.383 47.826 0.00 0.00 0.00 5.34
2749 2978 3.259876 TGGTTGTTAGATGGTAAGAGCGT 59.740 43.478 0.00 0.00 0.00 5.07
2750 2979 3.857052 TGGTTGTTAGATGGTAAGAGCG 58.143 45.455 0.00 0.00 0.00 5.03
2751 2980 5.880332 TGATTGGTTGTTAGATGGTAAGAGC 59.120 40.000 0.00 0.00 0.00 4.09
2752 2981 6.878923 TGTGATTGGTTGTTAGATGGTAAGAG 59.121 38.462 0.00 0.00 0.00 2.85
2753 2982 6.774673 TGTGATTGGTTGTTAGATGGTAAGA 58.225 36.000 0.00 0.00 0.00 2.10
2754 2983 7.447374 TTGTGATTGGTTGTTAGATGGTAAG 57.553 36.000 0.00 0.00 0.00 2.34
2755 2984 7.255660 GGTTTGTGATTGGTTGTTAGATGGTAA 60.256 37.037 0.00 0.00 0.00 2.85
2756 2985 6.207810 GGTTTGTGATTGGTTGTTAGATGGTA 59.792 38.462 0.00 0.00 0.00 3.25
2757 2986 5.010617 GGTTTGTGATTGGTTGTTAGATGGT 59.989 40.000 0.00 0.00 0.00 3.55
2758 2987 5.243730 AGGTTTGTGATTGGTTGTTAGATGG 59.756 40.000 0.00 0.00 0.00 3.51
2759 2988 6.331369 AGGTTTGTGATTGGTTGTTAGATG 57.669 37.500 0.00 0.00 0.00 2.90
2760 2989 6.976934 AAGGTTTGTGATTGGTTGTTAGAT 57.023 33.333 0.00 0.00 0.00 1.98
2761 2990 6.183360 GGAAAGGTTTGTGATTGGTTGTTAGA 60.183 38.462 0.00 0.00 0.00 2.10
2762 2991 5.983118 GGAAAGGTTTGTGATTGGTTGTTAG 59.017 40.000 0.00 0.00 0.00 2.34
2763 2992 5.163395 GGGAAAGGTTTGTGATTGGTTGTTA 60.163 40.000 0.00 0.00 0.00 2.41
2764 2993 4.383661 GGGAAAGGTTTGTGATTGGTTGTT 60.384 41.667 0.00 0.00 0.00 2.83
2765 2994 3.133901 GGGAAAGGTTTGTGATTGGTTGT 59.866 43.478 0.00 0.00 0.00 3.32
2766 2995 3.494223 GGGGAAAGGTTTGTGATTGGTTG 60.494 47.826 0.00 0.00 0.00 3.77
2767 2996 2.703536 GGGGAAAGGTTTGTGATTGGTT 59.296 45.455 0.00 0.00 0.00 3.67
2768 2997 2.325484 GGGGAAAGGTTTGTGATTGGT 58.675 47.619 0.00 0.00 0.00 3.67
2769 2998 1.623311 GGGGGAAAGGTTTGTGATTGG 59.377 52.381 0.00 0.00 0.00 3.16
2791 3020 2.031097 GCCCATCCCCCTGAAAATCAG 61.031 57.143 0.32 0.32 43.91 2.90
2792 3021 0.032217 GCCCATCCCCCTGAAAATCA 60.032 55.000 0.00 0.00 0.00 2.57
2793 3022 0.760567 GGCCCATCCCCCTGAAAATC 60.761 60.000 0.00 0.00 0.00 2.17
2794 3023 1.314518 GGCCCATCCCCCTGAAAAT 59.685 57.895 0.00 0.00 0.00 1.82
2795 3024 2.777146 GGCCCATCCCCCTGAAAA 59.223 61.111 0.00 0.00 0.00 2.29
2796 3025 3.738481 CGGCCCATCCCCCTGAAA 61.738 66.667 0.00 0.00 0.00 2.69
2810 3039 3.537206 AATAGATGAGCGGGGCGGC 62.537 63.158 0.00 0.00 0.00 6.53
2811 3040 1.669115 CAATAGATGAGCGGGGCGG 60.669 63.158 0.00 0.00 0.00 6.13
2812 3041 0.946221 GTCAATAGATGAGCGGGGCG 60.946 60.000 0.00 0.00 39.19 6.13
2813 3042 0.603975 GGTCAATAGATGAGCGGGGC 60.604 60.000 0.00 0.00 45.70 5.80
2814 3043 3.614399 GGTCAATAGATGAGCGGGG 57.386 57.895 0.00 0.00 45.70 5.73
2819 3048 8.616076 GTTAACCTTGATTGGTCAATAGATGAG 58.384 37.037 0.00 0.00 43.08 2.90
2820 3049 7.556275 GGTTAACCTTGATTGGTCAATAGATGA 59.444 37.037 17.83 0.00 43.08 2.92
2821 3050 7.339212 TGGTTAACCTTGATTGGTCAATAGATG 59.661 37.037 24.78 0.00 43.08 2.90
2822 3051 7.410174 TGGTTAACCTTGATTGGTCAATAGAT 58.590 34.615 24.78 0.00 43.08 1.98
2823 3052 6.785076 TGGTTAACCTTGATTGGTCAATAGA 58.215 36.000 24.78 0.00 43.08 1.98
2824 3053 7.201821 GGATGGTTAACCTTGATTGGTCAATAG 60.202 40.741 24.78 0.00 43.08 1.73
2825 3054 6.605594 GGATGGTTAACCTTGATTGGTCAATA 59.394 38.462 24.78 0.07 43.08 1.90
2826 3055 5.422012 GGATGGTTAACCTTGATTGGTCAAT 59.578 40.000 24.78 5.84 43.08 2.57
2827 3056 4.770010 GGATGGTTAACCTTGATTGGTCAA 59.230 41.667 24.78 0.73 41.89 3.18
2828 3057 4.044065 AGGATGGTTAACCTTGATTGGTCA 59.956 41.667 24.78 1.27 39.83 4.02
2829 3058 4.399303 CAGGATGGTTAACCTTGATTGGTC 59.601 45.833 24.78 9.78 39.83 4.02
2830 3059 4.202673 ACAGGATGGTTAACCTTGATTGGT 60.203 41.667 24.78 11.57 43.62 3.67
2831 3060 4.344104 ACAGGATGGTTAACCTTGATTGG 58.656 43.478 24.78 11.00 43.62 3.16
2832 3061 7.461182 TTTACAGGATGGTTAACCTTGATTG 57.539 36.000 24.78 17.36 43.62 2.67
2833 3062 7.309805 GCTTTTACAGGATGGTTAACCTTGATT 60.310 37.037 24.78 8.08 43.62 2.57
2834 3063 6.152831 GCTTTTACAGGATGGTTAACCTTGAT 59.847 38.462 24.78 10.77 43.62 2.57
2835 3064 5.475564 GCTTTTACAGGATGGTTAACCTTGA 59.524 40.000 24.78 5.89 43.62 3.02
2836 3065 5.336451 GGCTTTTACAGGATGGTTAACCTTG 60.336 44.000 24.78 18.27 43.62 3.61
2837 3066 4.770531 GGCTTTTACAGGATGGTTAACCTT 59.229 41.667 24.78 18.87 43.62 3.50
2838 3067 4.044191 AGGCTTTTACAGGATGGTTAACCT 59.956 41.667 24.78 10.91 43.62 3.50
2839 3068 4.157840 CAGGCTTTTACAGGATGGTTAACC 59.842 45.833 18.27 18.27 43.62 2.85
2840 3069 4.765339 ACAGGCTTTTACAGGATGGTTAAC 59.235 41.667 0.00 0.00 43.62 2.01
2841 3070 4.993028 ACAGGCTTTTACAGGATGGTTAA 58.007 39.130 0.00 0.00 43.62 2.01
2842 3071 4.650972 ACAGGCTTTTACAGGATGGTTA 57.349 40.909 0.00 0.00 43.62 2.85
2843 3072 3.525800 ACAGGCTTTTACAGGATGGTT 57.474 42.857 0.00 0.00 43.62 3.67
2844 3073 4.042934 AGTTACAGGCTTTTACAGGATGGT 59.957 41.667 0.00 0.00 43.62 3.55
2845 3074 4.589908 AGTTACAGGCTTTTACAGGATGG 58.410 43.478 0.00 0.00 43.62 3.51
2846 3075 4.330074 CGAGTTACAGGCTTTTACAGGATG 59.670 45.833 0.00 0.00 46.00 3.51
2847 3076 4.020485 ACGAGTTACAGGCTTTTACAGGAT 60.020 41.667 0.00 0.00 0.00 3.24
2848 3077 3.322828 ACGAGTTACAGGCTTTTACAGGA 59.677 43.478 0.00 0.00 0.00 3.86
2849 3078 3.660865 ACGAGTTACAGGCTTTTACAGG 58.339 45.455 0.00 0.00 0.00 4.00
2850 3079 5.007332 ACAAACGAGTTACAGGCTTTTACAG 59.993 40.000 0.00 0.00 0.00 2.74
2851 3080 4.877251 ACAAACGAGTTACAGGCTTTTACA 59.123 37.500 0.00 0.00 0.00 2.41
2852 3081 5.413969 ACAAACGAGTTACAGGCTTTTAC 57.586 39.130 0.00 0.00 0.00 2.01
2853 3082 6.047870 TGTACAAACGAGTTACAGGCTTTTA 58.952 36.000 0.00 0.00 0.00 1.52
2854 3083 4.877251 TGTACAAACGAGTTACAGGCTTTT 59.123 37.500 0.00 0.00 0.00 2.27
2855 3084 4.444536 TGTACAAACGAGTTACAGGCTTT 58.555 39.130 0.00 0.00 0.00 3.51
2856 3085 4.062677 TGTACAAACGAGTTACAGGCTT 57.937 40.909 0.00 0.00 0.00 4.35
2857 3086 3.738830 TGTACAAACGAGTTACAGGCT 57.261 42.857 0.00 0.00 0.00 4.58
2858 3087 3.744426 ACATGTACAAACGAGTTACAGGC 59.256 43.478 0.00 0.00 0.00 4.85
2859 3088 5.061808 GCTACATGTACAAACGAGTTACAGG 59.938 44.000 0.08 1.91 0.00 4.00
2860 3089 5.631929 TGCTACATGTACAAACGAGTTACAG 59.368 40.000 0.08 0.00 0.00 2.74
2861 3090 5.530712 TGCTACATGTACAAACGAGTTACA 58.469 37.500 0.08 0.00 0.00 2.41
2862 3091 6.642683 ATGCTACATGTACAAACGAGTTAC 57.357 37.500 0.08 0.00 0.00 2.50
2863 3092 6.401688 GCAATGCTACATGTACAAACGAGTTA 60.402 38.462 0.08 0.00 0.00 2.24
2864 3093 5.616866 GCAATGCTACATGTACAAACGAGTT 60.617 40.000 0.08 0.00 0.00 3.01
2865 3094 4.142902 GCAATGCTACATGTACAAACGAGT 60.143 41.667 0.08 0.00 0.00 4.18
2866 3095 4.334443 GCAATGCTACATGTACAAACGAG 58.666 43.478 0.08 0.00 0.00 4.18
2867 3096 3.126171 GGCAATGCTACATGTACAAACGA 59.874 43.478 4.82 0.00 0.00 3.85
2868 3097 3.425404 GGCAATGCTACATGTACAAACG 58.575 45.455 4.82 0.00 0.00 3.60
2869 3098 3.126171 TCGGCAATGCTACATGTACAAAC 59.874 43.478 4.82 0.73 0.00 2.93
2870 3099 3.339141 TCGGCAATGCTACATGTACAAA 58.661 40.909 4.82 0.00 0.00 2.83
2871 3100 2.935849 CTCGGCAATGCTACATGTACAA 59.064 45.455 4.82 0.00 0.00 2.41
2872 3101 2.093711 ACTCGGCAATGCTACATGTACA 60.094 45.455 4.82 0.00 0.00 2.90
2873 3102 2.550978 ACTCGGCAATGCTACATGTAC 58.449 47.619 4.82 0.16 0.00 2.90
2874 3103 2.979814 ACTCGGCAATGCTACATGTA 57.020 45.000 4.82 5.25 0.00 2.29
2875 3104 2.826428 CTACTCGGCAATGCTACATGT 58.174 47.619 4.82 2.69 0.00 3.21
2876 3105 1.528586 GCTACTCGGCAATGCTACATG 59.471 52.381 4.82 0.00 0.00 3.21
2877 3106 1.138859 TGCTACTCGGCAATGCTACAT 59.861 47.619 4.82 0.00 39.43 2.29
2878 3107 0.534873 TGCTACTCGGCAATGCTACA 59.465 50.000 4.82 0.00 39.43 2.74
2879 3108 1.528586 CATGCTACTCGGCAATGCTAC 59.471 52.381 4.82 0.00 45.68 3.58
2880 3109 1.412343 TCATGCTACTCGGCAATGCTA 59.588 47.619 4.82 0.00 45.68 3.49
2881 3110 0.178767 TCATGCTACTCGGCAATGCT 59.821 50.000 4.82 0.00 45.68 3.79
2882 3111 0.585357 CTCATGCTACTCGGCAATGC 59.415 55.000 0.00 0.00 45.68 3.56
2883 3112 1.863454 GACTCATGCTACTCGGCAATG 59.137 52.381 0.00 0.00 45.68 2.82
2884 3113 1.482182 TGACTCATGCTACTCGGCAAT 59.518 47.619 0.00 0.00 45.68 3.56
2885 3114 0.894835 TGACTCATGCTACTCGGCAA 59.105 50.000 0.00 0.00 45.68 4.52
2886 3115 1.114627 ATGACTCATGCTACTCGGCA 58.885 50.000 0.00 0.00 46.63 5.69
2887 3116 1.495878 CATGACTCATGCTACTCGGC 58.504 55.000 6.08 0.00 35.02 5.54
2896 3125 3.442625 ACAGAATTGGTGCATGACTCATG 59.557 43.478 13.90 13.90 43.91 3.07
2897 3126 3.693807 ACAGAATTGGTGCATGACTCAT 58.306 40.909 0.00 0.00 0.00 2.90
2938 3167 2.904932 GTCGAAACGACGATAAACGACT 59.095 45.455 20.02 0.00 46.56 4.18
2939 3168 3.246682 GTCGAAACGACGATAAACGAC 57.753 47.619 0.00 11.19 46.56 4.34
3008 3237 8.843262 CATACTATTGCAGATCAAGGAAATGAA 58.157 33.333 0.00 0.00 38.22 2.57
3066 3301 4.532521 AGACAGGACTAGTAAACCAGCATT 59.467 41.667 0.00 0.00 0.00 3.56
3128 3511 7.730364 TCTGTACCTCATTTGAGAAAGAAAC 57.270 36.000 9.15 0.00 44.74 2.78
3131 3514 6.706270 GTGTTCTGTACCTCATTTGAGAAAGA 59.294 38.462 9.15 3.91 44.74 2.52
3139 3522 5.308825 CCTCTTGTGTTCTGTACCTCATTT 58.691 41.667 0.00 0.00 0.00 2.32
3154 3537 6.015856 CACCTCTATATGTACTCCCTCTTGTG 60.016 46.154 0.00 0.00 0.00 3.33
3194 3577 2.028658 CACGATCCACCCATGATCTAGG 60.029 54.545 0.00 0.00 37.15 3.02
3290 4016 2.811317 CTCCAGCCTCAACGTCGC 60.811 66.667 0.00 0.00 0.00 5.19
3332 4058 1.891150 CATCTTCACCAAAGGCTTGCT 59.109 47.619 0.00 0.00 35.54 3.91
3414 4140 5.675538 AGATAGACATCCACTTTGTTAGGC 58.324 41.667 0.00 0.00 0.00 3.93
3621 4347 1.302033 CGGCAGCTCACTGTTTCCT 60.302 57.895 0.00 0.00 46.30 3.36
3646 4372 5.652014 GGGTGATAACTTGATTTCATGGTCA 59.348 40.000 0.00 0.00 0.00 4.02
3716 4442 0.906282 TCTGATGCAGACTGGGCAGA 60.906 55.000 4.26 0.00 45.68 4.26
3741 4467 5.455056 TTCTTCTCCAACTACTCTCACAC 57.545 43.478 0.00 0.00 0.00 3.82
3764 4492 2.367567 ACCACGGTCTTTGTATCACTGT 59.632 45.455 0.00 0.00 0.00 3.55
3773 4501 1.374252 CCCTCGACCACGGTCTTTG 60.374 63.158 14.12 4.27 42.54 2.77
3935 4663 1.191489 TCGGATGCCACACTCTTCCA 61.191 55.000 0.00 0.00 0.00 3.53
3979 4707 0.318441 CTGCTGAAACGGGACTCTCA 59.682 55.000 0.00 0.00 0.00 3.27
4135 4869 8.432013 TCCTTATGTACATAATTCTGCATGACT 58.568 33.333 24.81 0.00 33.29 3.41
4149 4883 8.378565 CCCACATAATCTCTTCCTTATGTACAT 58.621 37.037 13.93 13.93 43.32 2.29
4188 4922 3.845781 TTGTTCTCACTGCCTCTTCTT 57.154 42.857 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.