Multiple sequence alignment - TraesCS7A01G296500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G296500 chr7A 100.000 3443 0 0 1 3443 394837282 394833840 0.000000e+00 6359.0
1 TraesCS7A01G296500 chr7D 96.812 3105 53 16 296 3373 363038573 363041658 0.000000e+00 5144.0
2 TraesCS7A01G296500 chr7D 98.630 73 1 0 3371 3443 363044147 363044219 2.790000e-26 130.0
3 TraesCS7A01G296500 chr7D 100.000 31 0 0 253 283 363038543 363038573 1.330000e-04 58.4
4 TraesCS7A01G296500 chr7B 94.669 3264 85 28 247 3443 322474643 322477884 0.000000e+00 4981.0
5 TraesCS7A01G296500 chr1D 90.826 218 16 1 1 214 324726767 324726550 4.350000e-74 289.0
6 TraesCS7A01G296500 chr1B 82.456 228 34 5 1 222 550651772 550651999 9.750000e-46 195.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G296500 chr7A 394833840 394837282 3442 True 6359.000000 6359 100.000000 1 3443 1 chr7A.!!$R1 3442
1 TraesCS7A01G296500 chr7D 363038543 363044219 5676 False 1777.466667 5144 98.480667 253 3443 3 chr7D.!!$F1 3190
2 TraesCS7A01G296500 chr7B 322474643 322477884 3241 False 4981.000000 4981 94.669000 247 3443 1 chr7B.!!$F1 3196

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
30 31 0.033228 CCGCTGGATCCAGACAGATC 59.967 60.0 40.29 22.31 46.30 2.75 F
285 286 0.229753 GAGCGTATGATTTGCGACCG 59.770 55.0 0.00 0.00 35.17 4.79 F
982 985 0.608640 CTTCTAACACCCGGCTCACT 59.391 55.0 0.00 0.00 0.00 3.41 F
2149 2167 2.367567 GTTGAGGTGACTGTACTTCCCA 59.632 50.0 0.00 0.00 44.43 4.37 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1598 1601 0.667993 CTGGTTGCGGTTCACAATGT 59.332 50.000 0.0 0.0 0.00 2.71 R
1731 1749 1.671379 GTCCTTCTTGACGGCACCC 60.671 63.158 0.0 0.0 0.00 4.61 R
2296 2314 1.954382 TGACGACTGCTGAGTAACTGT 59.046 47.619 0.0 0.0 30.16 3.55 R
3072 3135 1.338020 GGTTGCTTGTTTGGGACAGAG 59.662 52.381 0.0 0.0 42.39 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.197790 CTTGCATCGGACCGCTGG 61.198 66.667 18.68 7.31 0.00 4.85
18 19 3.664025 CTTGCATCGGACCGCTGGA 62.664 63.158 18.68 13.73 0.00 3.86
19 20 2.930385 CTTGCATCGGACCGCTGGAT 62.930 60.000 18.68 0.00 0.00 3.41
20 21 2.663188 GCATCGGACCGCTGGATC 60.663 66.667 18.68 0.00 0.00 3.36
21 22 2.029666 CATCGGACCGCTGGATCC 59.970 66.667 9.66 4.20 0.00 3.36
22 23 2.443952 ATCGGACCGCTGGATCCA 60.444 61.111 15.27 15.27 34.35 3.41
23 24 2.502492 ATCGGACCGCTGGATCCAG 61.502 63.158 33.73 33.73 46.15 3.86
24 25 2.928988 ATCGGACCGCTGGATCCAGA 62.929 60.000 40.29 21.19 46.30 3.86
25 26 2.501610 GGACCGCTGGATCCAGAC 59.498 66.667 40.29 29.18 46.30 3.51
26 27 2.359169 GGACCGCTGGATCCAGACA 61.359 63.158 40.29 7.70 46.30 3.41
27 28 1.142748 GACCGCTGGATCCAGACAG 59.857 63.158 40.29 28.67 46.30 3.51
28 29 1.305297 ACCGCTGGATCCAGACAGA 60.305 57.895 40.29 6.48 46.30 3.41
29 30 0.689080 ACCGCTGGATCCAGACAGAT 60.689 55.000 40.29 18.29 46.30 2.90
30 31 0.033228 CCGCTGGATCCAGACAGATC 59.967 60.000 40.29 22.31 46.30 2.75
31 32 1.039068 CGCTGGATCCAGACAGATCT 58.961 55.000 40.29 0.00 46.30 2.75
38 39 2.584418 CAGACAGATCTGCCGCGG 60.584 66.667 24.05 24.05 45.83 6.46
39 40 3.071206 AGACAGATCTGCCGCGGT 61.071 61.111 28.70 6.29 32.29 5.68
40 41 2.125512 GACAGATCTGCCGCGGTT 60.126 61.111 28.70 9.51 0.00 4.44
41 42 2.434884 ACAGATCTGCCGCGGTTG 60.435 61.111 28.70 19.50 0.00 3.77
42 43 3.869272 CAGATCTGCCGCGGTTGC 61.869 66.667 28.70 13.41 37.91 4.17
43 44 4.393155 AGATCTGCCGCGGTTGCA 62.393 61.111 28.70 17.71 42.97 4.08
62 63 4.593864 GGTCTCCCTGCGCCGATC 62.594 72.222 4.18 0.00 0.00 3.69
63 64 3.532155 GTCTCCCTGCGCCGATCT 61.532 66.667 4.18 0.00 0.00 2.75
64 65 3.531207 TCTCCCTGCGCCGATCTG 61.531 66.667 4.18 0.00 0.00 2.90
65 66 4.598894 CTCCCTGCGCCGATCTGG 62.599 72.222 4.18 0.00 42.50 3.86
88 89 3.744719 CACGAGGAGCGGGTCGAA 61.745 66.667 10.92 0.00 46.49 3.71
89 90 3.745803 ACGAGGAGCGGGTCGAAC 61.746 66.667 10.92 0.00 46.49 3.95
90 91 3.744719 CGAGGAGCGGGTCGAACA 61.745 66.667 1.31 0.00 38.50 3.18
91 92 2.126031 GAGGAGCGGGTCGAACAC 60.126 66.667 1.31 0.00 0.00 3.32
92 93 2.600769 AGGAGCGGGTCGAACACT 60.601 61.111 1.31 0.00 0.00 3.55
93 94 2.432628 GGAGCGGGTCGAACACTG 60.433 66.667 1.31 0.00 0.00 3.66
94 95 2.432628 GAGCGGGTCGAACACTGG 60.433 66.667 1.31 0.00 0.00 4.00
95 96 3.934391 GAGCGGGTCGAACACTGGG 62.934 68.421 1.31 0.00 0.00 4.45
96 97 3.998672 GCGGGTCGAACACTGGGA 61.999 66.667 1.31 0.00 0.00 4.37
97 98 2.978824 CGGGTCGAACACTGGGAT 59.021 61.111 1.31 0.00 0.00 3.85
98 99 1.153628 CGGGTCGAACACTGGGATC 60.154 63.158 1.31 0.00 0.00 3.36
99 100 1.221021 GGGTCGAACACTGGGATCC 59.779 63.158 1.92 1.92 0.00 3.36
100 101 1.550130 GGGTCGAACACTGGGATCCA 61.550 60.000 15.23 0.00 31.10 3.41
108 109 2.367377 CTGGGATCCAGCAGGGGA 60.367 66.667 15.23 0.00 45.13 4.81
109 110 2.692368 TGGGATCCAGCAGGGGAC 60.692 66.667 15.23 0.00 40.44 4.46
110 111 3.866582 GGGATCCAGCAGGGGACG 61.867 72.222 15.23 0.00 40.44 4.79
111 112 3.083997 GGATCCAGCAGGGGACGT 61.084 66.667 6.95 0.00 40.44 4.34
112 113 2.501610 GATCCAGCAGGGGACGTC 59.498 66.667 7.13 7.13 40.44 4.34
113 114 3.432051 GATCCAGCAGGGGACGTCG 62.432 68.421 9.92 0.00 40.44 5.12
134 135 2.495866 GCATGGCGGATTTGGTGG 59.504 61.111 0.00 0.00 0.00 4.61
135 136 2.495866 CATGGCGGATTTGGTGGC 59.504 61.111 0.00 0.00 0.00 5.01
136 137 3.140141 ATGGCGGATTTGGTGGCG 61.140 61.111 0.00 0.00 0.00 5.69
170 171 4.087892 CAGGGACGGAGGCTGGTG 62.088 72.222 0.00 0.00 0.00 4.17
241 242 4.704833 TGCTGGGTCGCAGCCTTC 62.705 66.667 31.97 11.39 44.49 3.46
243 244 3.710722 CTGGGTCGCAGCCTTCCT 61.711 66.667 3.69 0.00 36.53 3.36
244 245 2.284331 TGGGTCGCAGCCTTCCTA 60.284 61.111 6.06 0.00 36.53 2.94
245 246 1.689233 TGGGTCGCAGCCTTCCTAT 60.689 57.895 6.06 0.00 36.53 2.57
246 247 1.271840 TGGGTCGCAGCCTTCCTATT 61.272 55.000 6.06 0.00 36.53 1.73
247 248 0.756903 GGGTCGCAGCCTTCCTATTA 59.243 55.000 0.00 0.00 31.81 0.98
248 249 1.348036 GGGTCGCAGCCTTCCTATTAT 59.652 52.381 0.00 0.00 31.81 1.28
249 250 2.565834 GGGTCGCAGCCTTCCTATTATA 59.434 50.000 0.00 0.00 31.81 0.98
250 251 3.197983 GGGTCGCAGCCTTCCTATTATAT 59.802 47.826 0.00 0.00 31.81 0.86
251 252 4.404715 GGGTCGCAGCCTTCCTATTATATA 59.595 45.833 0.00 0.00 31.81 0.86
283 284 1.004927 GTGGAGCGTATGATTTGCGAC 60.005 52.381 0.00 0.00 35.17 5.19
285 286 0.229753 GAGCGTATGATTTGCGACCG 59.770 55.000 0.00 0.00 35.17 4.79
348 349 9.971922 GATCTAAAATGTTTTGAGGGGATTATG 57.028 33.333 1.16 0.00 0.00 1.90
349 350 9.713684 ATCTAAAATGTTTTGAGGGGATTATGA 57.286 29.630 1.16 0.00 0.00 2.15
355 356 9.452287 AATGTTTTGAGGGGATTATGATTTTTG 57.548 29.630 0.00 0.00 0.00 2.44
503 504 1.961793 CTCCCAACCGAGTTTGTTGA 58.038 50.000 4.79 0.00 44.57 3.18
504 505 1.873591 CTCCCAACCGAGTTTGTTGAG 59.126 52.381 4.79 0.00 44.57 3.02
505 506 0.951558 CCCAACCGAGTTTGTTGAGG 59.048 55.000 4.79 1.54 44.57 3.86
506 507 0.951558 CCAACCGAGTTTGTTGAGGG 59.048 55.000 4.79 0.00 44.57 4.30
507 508 1.476110 CCAACCGAGTTTGTTGAGGGA 60.476 52.381 4.79 0.00 44.57 4.20
508 509 2.294074 CAACCGAGTTTGTTGAGGGAA 58.706 47.619 0.00 0.00 44.57 3.97
509 510 1.963172 ACCGAGTTTGTTGAGGGAAC 58.037 50.000 0.00 0.00 34.84 3.62
541 542 1.619977 CGGGAGAAGAAGGGAAGAGGA 60.620 57.143 0.00 0.00 0.00 3.71
668 669 2.202932 CAATCGACTCCCTGCCGG 60.203 66.667 0.00 0.00 0.00 6.13
982 985 0.608640 CTTCTAACACCCGGCTCACT 59.391 55.000 0.00 0.00 0.00 3.41
1731 1749 3.066342 GTGATGGCAAGATGACAGGAATG 59.934 47.826 0.00 0.00 39.76 2.67
2149 2167 2.367567 GTTGAGGTGACTGTACTTCCCA 59.632 50.000 0.00 0.00 44.43 4.37
2296 2314 0.250945 TTCCGTTAATGCTGCACCCA 60.251 50.000 3.57 0.00 0.00 4.51
2689 2715 4.662468 ATCTCTGTACTGTGTATGCCTG 57.338 45.455 0.00 0.00 0.00 4.85
2778 2833 8.437742 CAACAAATGCACCATTCTTTTCTATTC 58.562 33.333 0.00 0.00 32.43 1.75
3071 3134 4.499183 GAACATGCAGCAGTACTCTACTT 58.501 43.478 0.00 0.00 36.76 2.24
3072 3135 4.116747 ACATGCAGCAGTACTCTACTTC 57.883 45.455 0.00 0.00 36.76 3.01
3273 3359 2.014128 CACCGAACAACAGGAAACACT 58.986 47.619 0.00 0.00 0.00 3.55
3274 3360 3.199677 CACCGAACAACAGGAAACACTA 58.800 45.455 0.00 0.00 0.00 2.74
3323 3409 4.086457 GGTCCAAAAGTATCACCATTGGT 58.914 43.478 1.37 1.37 41.02 3.67
3364 3450 0.327924 TGGATGGGTCAGCGTCAAAT 59.672 50.000 0.00 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.930385 ATCCAGCGGTCCGATGCAAG 62.930 60.000 23.99 10.81 42.12 4.01
1 2 2.923426 GATCCAGCGGTCCGATGCAA 62.923 60.000 23.99 14.09 42.12 4.08
3 4 2.663188 GATCCAGCGGTCCGATGC 60.663 66.667 23.99 6.94 42.12 3.91
4 5 2.029666 GGATCCAGCGGTCCGATG 59.970 66.667 22.55 22.55 43.13 3.84
5 6 2.443952 TGGATCCAGCGGTCCGAT 60.444 61.111 17.49 5.54 37.32 4.18
7 8 3.147595 TCTGGATCCAGCGGTCCG 61.148 66.667 33.39 12.42 43.31 4.79
8 9 2.303549 CTGTCTGGATCCAGCGGTCC 62.304 65.000 33.39 18.87 43.31 4.46
9 10 1.142748 CTGTCTGGATCCAGCGGTC 59.857 63.158 33.39 22.47 43.31 4.79
10 11 0.689080 ATCTGTCTGGATCCAGCGGT 60.689 55.000 33.39 18.75 43.31 5.68
11 12 0.033228 GATCTGTCTGGATCCAGCGG 59.967 60.000 33.39 29.42 43.31 5.52
12 13 1.039068 AGATCTGTCTGGATCCAGCG 58.961 55.000 33.39 23.33 42.02 5.18
13 14 2.529780 CAGATCTGTCTGGATCCAGC 57.470 55.000 33.39 27.07 46.56 4.85
22 23 2.650116 AACCGCGGCAGATCTGTCT 61.650 57.895 28.58 3.25 31.96 3.41
23 24 2.125512 AACCGCGGCAGATCTGTC 60.126 61.111 28.58 20.66 0.00 3.51
24 25 2.434884 CAACCGCGGCAGATCTGT 60.435 61.111 28.58 0.00 0.00 3.41
25 26 3.869272 GCAACCGCGGCAGATCTG 61.869 66.667 28.58 18.84 0.00 2.90
26 27 4.393155 TGCAACCGCGGCAGATCT 62.393 61.111 28.58 0.00 42.97 2.75
46 47 3.532155 AGATCGGCGCAGGGAGAC 61.532 66.667 10.83 2.30 0.00 3.36
47 48 3.531207 CAGATCGGCGCAGGGAGA 61.531 66.667 10.83 0.00 0.00 3.71
48 49 4.598894 CCAGATCGGCGCAGGGAG 62.599 72.222 10.83 0.00 0.00 4.30
59 60 3.260483 CTCGTGCAGCGCCAGATC 61.260 66.667 2.29 0.00 41.07 2.75
60 61 4.827087 CCTCGTGCAGCGCCAGAT 62.827 66.667 2.29 0.00 41.07 2.90
68 69 4.803426 GACCCGCTCCTCGTGCAG 62.803 72.222 0.00 0.00 36.19 4.41
71 72 3.744719 TTCGACCCGCTCCTCGTG 61.745 66.667 0.00 0.00 36.19 4.35
72 73 3.745803 GTTCGACCCGCTCCTCGT 61.746 66.667 0.00 0.00 36.19 4.18
73 74 3.744719 TGTTCGACCCGCTCCTCG 61.745 66.667 0.00 0.00 38.08 4.63
74 75 2.126031 GTGTTCGACCCGCTCCTC 60.126 66.667 0.00 0.00 0.00 3.71
75 76 2.600769 AGTGTTCGACCCGCTCCT 60.601 61.111 0.00 0.00 0.00 3.69
76 77 2.432628 CAGTGTTCGACCCGCTCC 60.433 66.667 0.00 0.00 0.00 4.70
77 78 2.432628 CCAGTGTTCGACCCGCTC 60.433 66.667 0.00 0.00 0.00 5.03
78 79 4.003788 CCCAGTGTTCGACCCGCT 62.004 66.667 0.00 0.00 0.00 5.52
79 80 3.310860 ATCCCAGTGTTCGACCCGC 62.311 63.158 0.00 0.00 0.00 6.13
80 81 1.153628 GATCCCAGTGTTCGACCCG 60.154 63.158 0.00 0.00 0.00 5.28
81 82 1.221021 GGATCCCAGTGTTCGACCC 59.779 63.158 0.00 0.00 0.00 4.46
82 83 0.108138 CTGGATCCCAGTGTTCGACC 60.108 60.000 9.90 0.00 45.82 4.79
83 84 3.442996 CTGGATCCCAGTGTTCGAC 57.557 57.895 9.90 0.00 45.82 4.20
92 93 2.692368 GTCCCCTGCTGGATCCCA 60.692 66.667 11.88 0.00 36.63 4.37
93 94 3.866582 CGTCCCCTGCTGGATCCC 61.867 72.222 11.88 0.00 36.63 3.85
94 95 3.083997 ACGTCCCCTGCTGGATCC 61.084 66.667 11.88 4.20 36.63 3.36
95 96 2.501610 GACGTCCCCTGCTGGATC 59.498 66.667 11.88 0.29 36.63 3.36
96 97 3.461773 CGACGTCCCCTGCTGGAT 61.462 66.667 11.88 0.00 36.63 3.41
117 118 2.495866 CCACCAAATCCGCCATGC 59.504 61.111 0.00 0.00 0.00 4.06
118 119 2.495866 GCCACCAAATCCGCCATG 59.504 61.111 0.00 0.00 0.00 3.66
119 120 3.140141 CGCCACCAAATCCGCCAT 61.140 61.111 0.00 0.00 0.00 4.40
153 154 4.087892 CACCAGCCTCCGTCCCTG 62.088 72.222 0.00 0.00 0.00 4.45
226 227 1.690219 ATAGGAAGGCTGCGACCCAG 61.690 60.000 0.00 0.00 44.67 4.45
227 228 1.271840 AATAGGAAGGCTGCGACCCA 61.272 55.000 0.00 0.00 0.00 4.51
228 229 0.756903 TAATAGGAAGGCTGCGACCC 59.243 55.000 0.00 0.00 0.00 4.46
229 230 2.841442 ATAATAGGAAGGCTGCGACC 57.159 50.000 0.00 0.00 0.00 4.79
230 231 7.011482 CCAAATATATAATAGGAAGGCTGCGAC 59.989 40.741 0.00 0.00 0.00 5.19
231 232 7.047891 CCAAATATATAATAGGAAGGCTGCGA 58.952 38.462 0.00 0.00 0.00 5.10
232 233 7.047891 TCCAAATATATAATAGGAAGGCTGCG 58.952 38.462 0.00 0.00 0.00 5.18
233 234 8.807948 TTCCAAATATATAATAGGAAGGCTGC 57.192 34.615 8.33 0.00 31.93 5.25
244 245 9.003658 CGCTCCACTCTTTTCCAAATATATAAT 57.996 33.333 0.00 0.00 0.00 1.28
245 246 7.990886 ACGCTCCACTCTTTTCCAAATATATAA 59.009 33.333 0.00 0.00 0.00 0.98
246 247 7.506114 ACGCTCCACTCTTTTCCAAATATATA 58.494 34.615 0.00 0.00 0.00 0.86
247 248 6.357367 ACGCTCCACTCTTTTCCAAATATAT 58.643 36.000 0.00 0.00 0.00 0.86
248 249 5.741011 ACGCTCCACTCTTTTCCAAATATA 58.259 37.500 0.00 0.00 0.00 0.86
249 250 4.589908 ACGCTCCACTCTTTTCCAAATAT 58.410 39.130 0.00 0.00 0.00 1.28
250 251 4.015872 ACGCTCCACTCTTTTCCAAATA 57.984 40.909 0.00 0.00 0.00 1.40
251 252 2.863809 ACGCTCCACTCTTTTCCAAAT 58.136 42.857 0.00 0.00 0.00 2.32
283 284 4.260784 GCTTGATTAGATTACTTGCACCGG 60.261 45.833 0.00 0.00 0.00 5.28
285 286 4.640201 TGGCTTGATTAGATTACTTGCACC 59.360 41.667 0.00 0.00 0.00 5.01
486 487 0.951558 CCTCAACAAACTCGGTTGGG 59.048 55.000 5.55 2.08 44.47 4.12
490 491 1.210967 TGTTCCCTCAACAAACTCGGT 59.789 47.619 0.00 0.00 42.35 4.69
503 504 1.831652 CGCTGTCTTCCCTGTTCCCT 61.832 60.000 0.00 0.00 0.00 4.20
504 505 1.376037 CGCTGTCTTCCCTGTTCCC 60.376 63.158 0.00 0.00 0.00 3.97
505 506 1.376037 CCGCTGTCTTCCCTGTTCC 60.376 63.158 0.00 0.00 0.00 3.62
506 507 1.376037 CCCGCTGTCTTCCCTGTTC 60.376 63.158 0.00 0.00 0.00 3.18
507 508 1.831652 CTCCCGCTGTCTTCCCTGTT 61.832 60.000 0.00 0.00 0.00 3.16
508 509 2.203788 TCCCGCTGTCTTCCCTGT 60.204 61.111 0.00 0.00 0.00 4.00
509 510 1.544825 TTCTCCCGCTGTCTTCCCTG 61.545 60.000 0.00 0.00 0.00 4.45
541 542 5.009310 AGGTTTTATTTTCGGCTTTTCTCGT 59.991 36.000 0.00 0.00 0.00 4.18
668 669 1.700042 ATCAGTGGGAGGGCGGATTC 61.700 60.000 0.00 0.00 0.00 2.52
982 985 3.559171 GCCATCAAGGGCGGATCTAAATA 60.559 47.826 0.00 0.00 45.40 1.40
1598 1601 0.667993 CTGGTTGCGGTTCACAATGT 59.332 50.000 0.00 0.00 0.00 2.71
1621 1639 3.965539 CTGCTTCTGGGCTGGTCGG 62.966 68.421 0.00 0.00 0.00 4.79
1731 1749 1.671379 GTCCTTCTTGACGGCACCC 60.671 63.158 0.00 0.00 0.00 4.61
2296 2314 1.954382 TGACGACTGCTGAGTAACTGT 59.046 47.619 0.00 0.00 30.16 3.55
2778 2833 8.257830 GTCATTAAGACAAGAGGAAACCTTAG 57.742 38.462 0.00 0.00 46.77 2.18
2895 2950 8.667076 TCGCAGTGACTTGTACTAATATACTA 57.333 34.615 0.00 0.00 0.00 1.82
2901 2956 6.854496 TTTTTCGCAGTGACTTGTACTAAT 57.146 33.333 0.00 0.00 0.00 1.73
3029 3092 7.825331 TGTTCCAAACATTGACAACCTATTA 57.175 32.000 0.00 0.00 36.25 0.98
3071 3134 2.297701 GTTGCTTGTTTGGGACAGAGA 58.702 47.619 0.00 0.00 42.39 3.10
3072 3135 1.338020 GGTTGCTTGTTTGGGACAGAG 59.662 52.381 0.00 0.00 42.39 3.35
3173 3238 8.655935 ATTTGGTCATCTTCTGGTTCTTTTAT 57.344 30.769 0.00 0.00 0.00 1.40
3174 3239 8.477419 AATTTGGTCATCTTCTGGTTCTTTTA 57.523 30.769 0.00 0.00 0.00 1.52
3274 3360 9.110502 TCGCGAAATATCTGTGATATACTCTAT 57.889 33.333 6.20 0.00 0.00 1.98
3323 3409 5.104776 CCAACCATCTTGATCTCCAGAACTA 60.105 44.000 0.00 0.00 0.00 2.24
3364 3450 6.313519 AGCTGGTGAATTCCATAAACTCTA 57.686 37.500 2.27 0.00 36.84 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.