Multiple sequence alignment - TraesCS7A01G296400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G296400 chr7A 100.000 2518 0 0 1494 4011 394831752 394834269 0.000000e+00 4650.0
1 TraesCS7A01G296400 chr7A 100.000 1257 0 0 1 1257 394830259 394831515 0.000000e+00 2322.0
2 TraesCS7A01G296400 chr7A 84.769 650 79 11 1 631 77491850 77491202 5.660000e-178 634.0
3 TraesCS7A01G296400 chr7A 79.612 103 8 8 537 636 33541848 33541756 1.200000e-05 62.1
4 TraesCS7A01G296400 chr7B 98.184 1377 25 0 1499 2875 322479860 322478484 0.000000e+00 2405.0
5 TraesCS7A01G296400 chr7B 92.710 1070 33 20 2976 4011 322478496 322477438 0.000000e+00 1502.0
6 TraesCS7A01G296400 chr7B 88.494 478 20 14 767 1244 322480804 322480362 2.730000e-151 545.0
7 TraesCS7A01G296400 chr7B 96.262 107 4 0 2872 2978 97964150 97964044 4.120000e-40 176.0
8 TraesCS7A01G296400 chr7B 92.500 120 7 2 2865 2983 244955295 244955177 1.920000e-38 171.0
9 TraesCS7A01G296400 chr7D 97.909 1387 21 2 1494 2875 363046192 363044809 0.000000e+00 2394.0
10 TraesCS7A01G296400 chr7D 96.053 684 15 5 2975 3654 363044822 363044147 0.000000e+00 1103.0
11 TraesCS7A01G296400 chr7D 93.952 496 8 5 766 1257 363046721 363046244 0.000000e+00 730.0
12 TraesCS7A01G296400 chr7D 95.278 360 9 5 3652 4011 363041658 363041307 7.530000e-157 564.0
13 TraesCS7A01G296400 chr3A 97.484 636 16 0 1 636 114566389 114567024 0.000000e+00 1086.0
14 TraesCS7A01G296400 chr3A 97.143 105 3 0 2872 2976 627707088 627706984 1.150000e-40 178.0
15 TraesCS7A01G296400 chr4A 97.170 636 18 0 1 636 598701406 598702041 0.000000e+00 1075.0
16 TraesCS7A01G296400 chr3D 93.407 637 30 2 1 636 266401553 266402178 0.000000e+00 933.0
17 TraesCS7A01G296400 chr3D 84.026 626 89 10 1 619 481876760 481877381 3.450000e-165 592.0
18 TraesCS7A01G296400 chr2B 88.576 639 67 5 1 636 186401147 186401782 0.000000e+00 771.0
19 TraesCS7A01G296400 chr2B 98.077 104 2 0 2872 2975 682862072 682861969 8.860000e-42 182.0
20 TraesCS7A01G296400 chr3B 81.476 637 112 6 1 632 785723018 785723653 5.940000e-143 518.0
21 TraesCS7A01G296400 chr3B 95.161 62 3 0 1 62 788276705 788276644 9.170000e-17 99.0
22 TraesCS7A01G296400 chr5B 83.902 205 26 6 435 636 570849368 570849168 5.290000e-44 189.0
23 TraesCS7A01G296400 chr5B 98.077 104 2 0 2872 2975 542198434 542198537 8.860000e-42 182.0
24 TraesCS7A01G296400 chr5B 97.115 104 3 0 2872 2975 664878802 664878699 4.120000e-40 176.0
25 TraesCS7A01G296400 chr1B 97.143 105 3 0 2872 2976 409673897 409674001 1.150000e-40 178.0
26 TraesCS7A01G296400 chr5A 97.115 104 3 0 2872 2975 708080850 708080953 4.120000e-40 176.0
27 TraesCS7A01G296400 chr2A 97.115 104 3 0 2872 2975 45092461 45092564 4.120000e-40 176.0
28 TraesCS7A01G296400 chr6A 97.143 35 0 1 658 692 6020509 6020542 1.560000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G296400 chr7A 394830259 394834269 4010 False 3486.00 4650 100.000000 1 4011 2 chr7A.!!$F1 4010
1 TraesCS7A01G296400 chr7A 77491202 77491850 648 True 634.00 634 84.769000 1 631 1 chr7A.!!$R2 630
2 TraesCS7A01G296400 chr7B 322477438 322480804 3366 True 1484.00 2405 93.129333 767 4011 3 chr7B.!!$R3 3244
3 TraesCS7A01G296400 chr7D 363041307 363046721 5414 True 1197.75 2394 95.798000 766 4011 4 chr7D.!!$R1 3245
4 TraesCS7A01G296400 chr3A 114566389 114567024 635 False 1086.00 1086 97.484000 1 636 1 chr3A.!!$F1 635
5 TraesCS7A01G296400 chr4A 598701406 598702041 635 False 1075.00 1075 97.170000 1 636 1 chr4A.!!$F1 635
6 TraesCS7A01G296400 chr3D 266401553 266402178 625 False 933.00 933 93.407000 1 636 1 chr3D.!!$F1 635
7 TraesCS7A01G296400 chr3D 481876760 481877381 621 False 592.00 592 84.026000 1 619 1 chr3D.!!$F2 618
8 TraesCS7A01G296400 chr2B 186401147 186401782 635 False 771.00 771 88.576000 1 636 1 chr2B.!!$F1 635
9 TraesCS7A01G296400 chr3B 785723018 785723653 635 False 518.00 518 81.476000 1 632 1 chr3B.!!$F1 631

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
654 690 0.179100 CTCACTCATTCCCGCGTCAT 60.179 55.0 4.92 0.0 0.00 3.06 F
655 691 0.179111 TCACTCATTCCCGCGTCATC 60.179 55.0 4.92 0.0 0.00 2.92 F
849 885 0.318441 TCAGACAGAACCTGGAAGCG 59.682 55.0 0.00 0.0 35.51 4.68 F
850 886 0.671781 CAGACAGAACCTGGAAGCGG 60.672 60.0 0.00 0.0 35.51 5.52 F
1898 2190 0.808755 CCCTGCCAATTTCACCGTAC 59.191 55.0 0.00 0.0 0.00 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1892 2184 2.352503 AGCGATTGTAAACGTACGGT 57.647 45.000 21.06 11.03 32.40 4.83 R
1907 2199 2.702478 AGAATGGAGGATGATCAAGCGA 59.298 45.455 0.00 0.00 0.00 4.93 R
2039 2331 3.118445 TCGCCACTCCATCAATATTGTGA 60.118 43.478 14.97 9.43 0.00 3.58 R
2235 2527 3.886123 CCTTTCCAAGGTACCCATACAG 58.114 50.000 8.74 0.00 43.95 2.74 R
3188 3483 0.323360 GGCAACCTGCTTGGATACCA 60.323 55.000 3.40 0.00 44.28 3.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 77 1.387295 ATCGCCATCTCGAGAGCACA 61.387 55.000 21.52 9.19 42.14 4.57
281 284 1.378531 TGAGTTTCTGCTTTGTGCGT 58.621 45.000 0.00 0.00 46.63 5.24
532 553 4.308458 CCCTTCACGCACCACCGA 62.308 66.667 0.00 0.00 0.00 4.69
589 614 3.113386 CTCGACAGCGATCGCCTCA 62.113 63.158 34.89 18.05 46.80 3.86
605 641 0.248661 CTCACAATCGCCTCGATCGT 60.249 55.000 15.94 0.00 46.30 3.73
623 659 1.699343 GTCTCTCCGTGTTTTCCTCG 58.301 55.000 0.00 0.00 0.00 4.63
643 679 2.125912 AGGTGGGCCCTCACTCAT 59.874 61.111 25.70 3.04 40.71 2.90
644 680 1.542375 AGGTGGGCCCTCACTCATT 60.542 57.895 25.70 0.00 40.71 2.57
645 681 1.077429 GGTGGGCCCTCACTCATTC 60.077 63.158 25.70 0.24 37.75 2.67
646 682 1.077429 GTGGGCCCTCACTCATTCC 60.077 63.158 25.70 0.00 34.98 3.01
647 683 2.308722 TGGGCCCTCACTCATTCCC 61.309 63.158 25.70 0.00 0.00 3.97
648 684 2.190578 GGCCCTCACTCATTCCCG 59.809 66.667 0.00 0.00 0.00 5.14
649 685 2.514824 GCCCTCACTCATTCCCGC 60.515 66.667 0.00 0.00 0.00 6.13
650 686 2.202932 CCCTCACTCATTCCCGCG 60.203 66.667 0.00 0.00 0.00 6.46
651 687 2.579201 CCTCACTCATTCCCGCGT 59.421 61.111 4.92 0.00 0.00 6.01
652 688 1.519455 CCTCACTCATTCCCGCGTC 60.519 63.158 4.92 0.00 0.00 5.19
653 689 1.215382 CTCACTCATTCCCGCGTCA 59.785 57.895 4.92 0.00 0.00 4.35
654 690 0.179100 CTCACTCATTCCCGCGTCAT 60.179 55.000 4.92 0.00 0.00 3.06
655 691 0.179111 TCACTCATTCCCGCGTCATC 60.179 55.000 4.92 0.00 0.00 2.92
656 692 1.144057 ACTCATTCCCGCGTCATCC 59.856 57.895 4.92 0.00 0.00 3.51
657 693 1.951130 CTCATTCCCGCGTCATCCG 60.951 63.158 4.92 0.00 40.40 4.18
683 719 2.892425 CGGCGTTGGGATCTGCTC 60.892 66.667 0.00 0.00 0.00 4.26
684 720 2.586792 GGCGTTGGGATCTGCTCT 59.413 61.111 0.00 0.00 0.00 4.09
685 721 1.817099 GGCGTTGGGATCTGCTCTG 60.817 63.158 0.00 0.00 0.00 3.35
686 722 2.467826 GCGTTGGGATCTGCTCTGC 61.468 63.158 0.00 0.00 0.00 4.26
687 723 1.220206 CGTTGGGATCTGCTCTGCT 59.780 57.895 0.00 0.00 0.00 4.24
688 724 0.461548 CGTTGGGATCTGCTCTGCTA 59.538 55.000 0.00 0.00 0.00 3.49
689 725 1.537776 CGTTGGGATCTGCTCTGCTAG 60.538 57.143 0.00 0.00 0.00 3.42
705 741 6.856135 TCTGCTAGCAGATCAATTACAATG 57.144 37.500 37.64 13.21 46.80 2.82
706 742 6.351711 TCTGCTAGCAGATCAATTACAATGT 58.648 36.000 37.64 0.00 46.80 2.71
707 743 7.500141 TCTGCTAGCAGATCAATTACAATGTA 58.500 34.615 37.64 14.44 46.80 2.29
708 744 7.986889 TCTGCTAGCAGATCAATTACAATGTAA 59.013 33.333 37.64 14.07 46.80 2.41
709 745 8.504812 TGCTAGCAGATCAATTACAATGTAAA 57.495 30.769 14.93 0.00 0.00 2.01
710 746 8.615211 TGCTAGCAGATCAATTACAATGTAAAG 58.385 33.333 14.93 6.31 0.00 1.85
711 747 8.072567 GCTAGCAGATCAATTACAATGTAAAGG 58.927 37.037 10.63 5.62 0.00 3.11
712 748 7.338800 AGCAGATCAATTACAATGTAAAGGG 57.661 36.000 10.09 3.25 0.00 3.95
713 749 6.891908 AGCAGATCAATTACAATGTAAAGGGT 59.108 34.615 10.09 1.62 0.00 4.34
714 750 6.974622 GCAGATCAATTACAATGTAAAGGGTG 59.025 38.462 10.09 6.55 0.00 4.61
715 751 7.483307 CAGATCAATTACAATGTAAAGGGTGG 58.517 38.462 10.09 0.00 0.00 4.61
716 752 5.652994 TCAATTACAATGTAAAGGGTGGC 57.347 39.130 10.09 0.00 0.00 5.01
717 753 5.080337 TCAATTACAATGTAAAGGGTGGCA 58.920 37.500 10.09 0.00 0.00 4.92
718 754 5.540337 TCAATTACAATGTAAAGGGTGGCAA 59.460 36.000 10.09 0.00 0.00 4.52
719 755 6.042093 TCAATTACAATGTAAAGGGTGGCAAA 59.958 34.615 10.09 0.00 0.00 3.68
720 756 5.871396 TTACAATGTAAAGGGTGGCAAAA 57.129 34.783 2.97 0.00 0.00 2.44
721 757 4.972751 ACAATGTAAAGGGTGGCAAAAT 57.027 36.364 0.00 0.00 0.00 1.82
722 758 7.540474 TTACAATGTAAAGGGTGGCAAAATA 57.460 32.000 2.97 0.00 0.00 1.40
723 759 6.619329 ACAATGTAAAGGGTGGCAAAATAT 57.381 33.333 0.00 0.00 0.00 1.28
724 760 6.639563 ACAATGTAAAGGGTGGCAAAATATC 58.360 36.000 0.00 0.00 0.00 1.63
725 761 6.212388 ACAATGTAAAGGGTGGCAAAATATCA 59.788 34.615 0.00 0.00 0.00 2.15
726 762 6.865834 ATGTAAAGGGTGGCAAAATATCAA 57.134 33.333 0.00 0.00 0.00 2.57
727 763 6.672266 TGTAAAGGGTGGCAAAATATCAAA 57.328 33.333 0.00 0.00 0.00 2.69
728 764 6.696411 TGTAAAGGGTGGCAAAATATCAAAG 58.304 36.000 0.00 0.00 0.00 2.77
729 765 5.823861 AAAGGGTGGCAAAATATCAAAGT 57.176 34.783 0.00 0.00 0.00 2.66
730 766 4.806640 AGGGTGGCAAAATATCAAAGTG 57.193 40.909 0.00 0.00 0.00 3.16
731 767 3.055891 AGGGTGGCAAAATATCAAAGTGC 60.056 43.478 0.00 0.00 34.42 4.40
732 768 3.055891 GGGTGGCAAAATATCAAAGTGCT 60.056 43.478 0.00 0.00 35.53 4.40
733 769 4.159506 GGGTGGCAAAATATCAAAGTGCTA 59.840 41.667 0.00 0.00 35.53 3.49
734 770 5.337169 GGGTGGCAAAATATCAAAGTGCTAA 60.337 40.000 0.00 0.00 35.53 3.09
735 771 6.162777 GGTGGCAAAATATCAAAGTGCTAAA 58.837 36.000 0.00 0.00 35.53 1.85
736 772 6.818142 GGTGGCAAAATATCAAAGTGCTAAAT 59.182 34.615 0.00 0.00 35.53 1.40
737 773 7.978975 GGTGGCAAAATATCAAAGTGCTAAATA 59.021 33.333 0.00 0.00 35.53 1.40
738 774 9.364989 GTGGCAAAATATCAAAGTGCTAAATAA 57.635 29.630 0.00 0.00 35.53 1.40
739 775 9.585099 TGGCAAAATATCAAAGTGCTAAATAAG 57.415 29.630 0.00 0.00 35.53 1.73
740 776 9.586435 GGCAAAATATCAAAGTGCTAAATAAGT 57.414 29.630 0.00 0.00 35.53 2.24
745 781 5.957842 TCAAAGTGCTAAATAAGTGGTGG 57.042 39.130 0.00 0.00 0.00 4.61
746 782 4.217550 TCAAAGTGCTAAATAAGTGGTGGC 59.782 41.667 0.00 0.00 0.00 5.01
747 783 3.433306 AGTGCTAAATAAGTGGTGGCA 57.567 42.857 0.00 0.00 0.00 4.92
748 784 3.761897 AGTGCTAAATAAGTGGTGGCAA 58.238 40.909 0.00 0.00 0.00 4.52
749 785 4.148838 AGTGCTAAATAAGTGGTGGCAAA 58.851 39.130 0.00 0.00 0.00 3.68
750 786 4.586841 AGTGCTAAATAAGTGGTGGCAAAA 59.413 37.500 0.00 0.00 0.00 2.44
751 787 5.069781 AGTGCTAAATAAGTGGTGGCAAAAA 59.930 36.000 0.00 0.00 0.00 1.94
799 835 3.072468 CCCTCCCACGGCGAGTAA 61.072 66.667 16.62 0.00 0.00 2.24
848 884 2.550830 TTCAGACAGAACCTGGAAGC 57.449 50.000 0.00 0.00 35.51 3.86
849 885 0.318441 TCAGACAGAACCTGGAAGCG 59.682 55.000 0.00 0.00 35.51 4.68
850 886 0.671781 CAGACAGAACCTGGAAGCGG 60.672 60.000 0.00 0.00 35.51 5.52
851 887 2.032681 ACAGAACCTGGAAGCGGC 59.967 61.111 0.00 0.00 35.51 6.53
852 888 2.032528 CAGAACCTGGAAGCGGCA 59.967 61.111 0.00 0.00 0.00 5.69
853 889 2.037136 CAGAACCTGGAAGCGGCAG 61.037 63.158 0.00 0.00 0.00 4.85
854 890 2.747855 GAACCTGGAAGCGGCAGG 60.748 66.667 0.00 2.22 41.64 4.85
855 891 3.249189 AACCTGGAAGCGGCAGGA 61.249 61.111 10.71 0.00 39.31 3.86
856 892 3.259633 AACCTGGAAGCGGCAGGAG 62.260 63.158 10.71 0.00 39.31 3.69
857 893 4.479993 CCTGGAAGCGGCAGGAGG 62.480 72.222 1.45 0.00 38.33 4.30
858 894 3.393970 CTGGAAGCGGCAGGAGGA 61.394 66.667 1.45 0.00 0.00 3.71
859 895 3.382803 CTGGAAGCGGCAGGAGGAG 62.383 68.421 1.45 0.00 0.00 3.69
860 896 4.847444 GGAAGCGGCAGGAGGAGC 62.847 72.222 1.45 0.00 0.00 4.70
954 994 1.451504 CTGTGACTGTTGGGAGGCA 59.548 57.895 0.00 0.00 0.00 4.75
1512 1799 1.996798 TTGTCTGTCTCGGACTCCTT 58.003 50.000 9.60 0.00 40.15 3.36
1566 1853 1.714541 AGATGCACAGAGGATCCGAT 58.285 50.000 5.98 0.00 45.38 4.18
1584 1871 6.509418 TCCGATGGATTTTCCTTTTTACTG 57.491 37.500 0.00 0.00 37.46 2.74
1586 1873 5.102313 CGATGGATTTTCCTTTTTACTGCC 58.898 41.667 0.00 0.00 37.46 4.85
1591 1878 6.208599 TGGATTTTCCTTTTTACTGCCAGTAG 59.791 38.462 4.51 0.00 37.46 2.57
1721 2013 4.710324 ACTCCTATCTCCTAGAGTTCACG 58.290 47.826 0.00 0.00 0.00 4.35
1892 2184 2.238521 GAACTGTCCCTGCCAATTTCA 58.761 47.619 0.00 0.00 0.00 2.69
1898 2190 0.808755 CCCTGCCAATTTCACCGTAC 59.191 55.000 0.00 0.00 0.00 3.67
1907 2199 5.691815 CCAATTTCACCGTACGTTTACAAT 58.308 37.500 15.21 3.10 0.00 2.71
2039 2331 4.025360 TGCTGAAAATACAGGCCAATGAT 58.975 39.130 5.01 0.00 38.22 2.45
2235 2527 7.496263 GGTCTACACAGGAAATTCTTCTTATCC 59.504 40.741 0.00 0.00 0.00 2.59
2689 2981 6.282167 TGCTTGAAAATTTTGCAGAGATTGA 58.718 32.000 8.47 0.00 0.00 2.57
2696 2988 9.630098 GAAAATTTTGCAGAGATTGATGACTTA 57.370 29.630 8.47 0.00 0.00 2.24
2871 3163 1.202463 CCGAGACACATAGCCTTCTGG 60.202 57.143 0.00 0.00 0.00 3.86
2872 3164 1.202463 CGAGACACATAGCCTTCTGGG 60.202 57.143 0.00 0.00 38.36 4.45
2873 3165 2.111384 GAGACACATAGCCTTCTGGGA 58.889 52.381 0.00 0.00 37.23 4.37
2874 3166 1.834263 AGACACATAGCCTTCTGGGAC 59.166 52.381 0.00 0.00 37.23 4.46
2875 3167 0.537188 ACACATAGCCTTCTGGGACG 59.463 55.000 0.00 0.00 37.23 4.79
2876 3168 0.537188 CACATAGCCTTCTGGGACGT 59.463 55.000 0.00 0.00 37.23 4.34
2877 3169 0.537188 ACATAGCCTTCTGGGACGTG 59.463 55.000 0.00 0.00 37.23 4.49
2878 3170 0.179073 CATAGCCTTCTGGGACGTGG 60.179 60.000 0.00 0.00 37.23 4.94
2879 3171 1.972660 ATAGCCTTCTGGGACGTGGC 61.973 60.000 0.00 0.00 43.52 5.01
2880 3172 4.021925 GCCTTCTGGGACGTGGCT 62.022 66.667 0.00 0.00 40.36 4.75
2881 3173 2.266055 CCTTCTGGGACGTGGCTC 59.734 66.667 0.00 0.00 37.23 4.70
2882 3174 2.125912 CTTCTGGGACGTGGCTCG 60.126 66.667 7.50 7.50 46.00 5.03
2891 3183 2.865308 CGTGGCTCGTCTGACGTA 59.135 61.111 27.16 14.42 43.14 3.57
2892 3184 1.511464 CGTGGCTCGTCTGACGTAC 60.511 63.158 27.16 19.93 43.14 3.67
2893 3185 1.511464 GTGGCTCGTCTGACGTACG 60.511 63.158 27.16 15.01 43.14 3.67
2894 3186 2.099831 GGCTCGTCTGACGTACGG 59.900 66.667 27.16 16.97 43.14 4.02
2895 3187 2.576317 GCTCGTCTGACGTACGGC 60.576 66.667 27.16 18.72 43.14 5.68
2896 3188 2.099831 CTCGTCTGACGTACGGCC 59.900 66.667 27.16 10.81 43.14 6.13
2897 3189 3.392595 CTCGTCTGACGTACGGCCC 62.393 68.421 27.16 8.13 43.14 5.80
2898 3190 3.740397 CGTCTGACGTACGGCCCA 61.740 66.667 20.48 12.43 36.74 5.36
2899 3191 2.126189 GTCTGACGTACGGCCCAC 60.126 66.667 20.48 11.37 0.00 4.61
2900 3192 2.598099 TCTGACGTACGGCCCACA 60.598 61.111 20.48 9.53 0.00 4.17
2901 3193 2.431942 CTGACGTACGGCCCACAC 60.432 66.667 20.48 1.76 0.00 3.82
2902 3194 3.215597 CTGACGTACGGCCCACACA 62.216 63.158 20.48 0.00 0.00 3.72
2903 3195 2.735857 GACGTACGGCCCACACAC 60.736 66.667 21.06 0.00 0.00 3.82
2904 3196 3.216944 GACGTACGGCCCACACACT 62.217 63.158 21.06 0.00 0.00 3.55
2905 3197 2.736995 CGTACGGCCCACACACTG 60.737 66.667 7.57 0.00 0.00 3.66
2906 3198 2.738480 GTACGGCCCACACACTGA 59.262 61.111 0.00 0.00 0.00 3.41
2907 3199 1.666872 GTACGGCCCACACACTGAC 60.667 63.158 0.00 0.00 0.00 3.51
2908 3200 3.215597 TACGGCCCACACACTGACG 62.216 63.158 0.00 0.00 0.00 4.35
2909 3201 4.602259 CGGCCCACACACTGACGT 62.602 66.667 0.00 0.00 0.00 4.34
2910 3202 2.972505 GGCCCACACACTGACGTG 60.973 66.667 0.00 0.00 46.63 4.49
2932 3224 3.797353 CCCGGACCCACCCATCAG 61.797 72.222 0.73 0.00 34.64 2.90
2933 3225 4.489771 CCGGACCCACCCATCAGC 62.490 72.222 0.00 0.00 34.64 4.26
2934 3226 4.838152 CGGACCCACCCATCAGCG 62.838 72.222 0.00 0.00 34.64 5.18
2935 3227 4.489771 GGACCCACCCATCAGCGG 62.490 72.222 0.00 0.00 0.00 5.52
2940 3232 4.738998 CACCCATCAGCGGCCCAA 62.739 66.667 0.00 0.00 0.00 4.12
2941 3233 4.740822 ACCCATCAGCGGCCCAAC 62.741 66.667 0.00 0.00 0.00 3.77
2945 3237 3.395702 ATCAGCGGCCCAACGGTA 61.396 61.111 0.00 0.00 43.39 4.02
2946 3238 3.385749 ATCAGCGGCCCAACGGTAG 62.386 63.158 0.00 0.00 43.39 3.18
2959 3251 3.531207 GGTAGGGGGCCGTACGTC 61.531 72.222 15.21 0.00 37.95 4.34
2960 3252 2.755469 GTAGGGGGCCGTACGTCA 60.755 66.667 15.21 0.00 0.00 4.35
2961 3253 2.440796 TAGGGGGCCGTACGTCAG 60.441 66.667 15.21 0.00 0.00 3.51
2966 3258 3.152400 GGCCGTACGTCAGGGGAT 61.152 66.667 15.21 0.00 32.45 3.85
2967 3259 2.416260 GCCGTACGTCAGGGGATC 59.584 66.667 15.21 0.00 32.45 3.36
2968 3260 3.126528 CCGTACGTCAGGGGATCC 58.873 66.667 15.21 1.92 0.00 3.36
2969 3261 2.719979 CGTACGTCAGGGGATCCG 59.280 66.667 7.22 0.00 38.33 4.18
2970 3262 2.842256 CGTACGTCAGGGGATCCGG 61.842 68.421 7.22 0.00 38.33 5.14
2971 3263 2.836360 TACGTCAGGGGATCCGGC 60.836 66.667 5.45 0.00 38.33 6.13
2972 3264 3.369410 TACGTCAGGGGATCCGGCT 62.369 63.158 5.45 0.00 38.33 5.52
2973 3265 3.917760 CGTCAGGGGATCCGGCTC 61.918 72.222 5.45 0.00 38.33 4.70
2974 3266 3.551407 GTCAGGGGATCCGGCTCC 61.551 72.222 16.35 16.35 38.33 4.70
2975 3267 4.088351 TCAGGGGATCCGGCTCCA 62.088 66.667 25.14 2.13 37.01 3.86
2976 3268 3.554342 CAGGGGATCCGGCTCCAG 61.554 72.222 25.14 10.98 37.01 3.86
3043 3335 2.812011 CAGTAACCACTAACCAACTGCC 59.188 50.000 0.00 0.00 32.21 4.85
3138 3430 3.073678 TCAATCGTCATTTGACTGTGGG 58.926 45.455 8.91 0.00 42.66 4.61
3188 3483 5.935789 CCAATTGATGAATGCACCTTCTTTT 59.064 36.000 7.12 0.00 0.00 2.27
3206 3501 1.544724 TTGGTATCCAAGCAGGTTGC 58.455 50.000 6.84 0.00 45.46 4.17
3276 3571 8.023128 GTGTATGAGTTGCATAAAACAATCAGT 58.977 33.333 0.00 0.00 40.97 3.41
3284 3579 7.144722 TGCATAAAACAATCAGTTAGGTCAG 57.855 36.000 0.00 0.00 40.26 3.51
3295 3591 2.628657 AGTTAGGTCAGCGAGTCTTTGT 59.371 45.455 0.00 0.00 0.00 2.83
3305 3601 6.531948 GTCAGCGAGTCTTTGTTAGAATGTAT 59.468 38.462 0.00 0.00 33.81 2.29
3386 3685 8.716674 TTCACTTAAAACTAGACTAGAAGGGA 57.283 34.615 16.55 12.04 0.00 4.20
3408 3707 3.139397 ACCAAGGGAAATTACACCAGTCA 59.861 43.478 0.00 0.00 0.00 3.41
3460 3760 6.037830 ACAAACTCAGCATTTTACAGTTACGT 59.962 34.615 0.00 0.00 0.00 3.57
3659 3967 6.313519 AGCTGGTGAATTCCATAAACTCTA 57.686 37.500 2.27 0.00 36.84 2.43
3700 6498 5.104776 CCAACCATCTTGATCTCCAGAACTA 60.105 44.000 0.00 0.00 0.00 2.24
3747 6545 7.379098 TCGCGAAATATCTGTGATATACTCT 57.621 36.000 6.20 0.00 0.00 3.24
3748 6546 8.488651 TCGCGAAATATCTGTGATATACTCTA 57.511 34.615 6.20 0.00 0.00 2.43
3849 6668 8.477419 AATTTGGTCATCTTCTGGTTCTTTTA 57.523 30.769 0.00 0.00 0.00 1.52
3850 6669 8.655935 ATTTGGTCATCTTCTGGTTCTTTTAT 57.344 30.769 0.00 0.00 0.00 1.40
3951 6772 1.338020 GGTTGCTTGTTTGGGACAGAG 59.662 52.381 0.00 0.00 42.39 3.35
3952 6773 2.297701 GTTGCTTGTTTGGGACAGAGA 58.702 47.619 0.00 0.00 42.39 3.10
3994 6815 7.825331 TGTTCCAAACATTGACAACCTATTA 57.175 32.000 0.00 0.00 36.25 0.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 77 1.064166 CCCCAAGGCTCATGAATCAGT 60.064 52.381 0.00 0.00 0.00 3.41
281 284 0.106708 GTGCAGAAGACACCACTGGA 59.893 55.000 0.71 0.00 33.00 3.86
317 320 2.658593 GCGATCAGGCGTGCGTAT 60.659 61.111 0.35 0.00 0.00 3.06
532 553 3.031417 GCGGTGGTGGTGAGGCTAT 62.031 63.158 0.00 0.00 0.00 2.97
605 641 0.038526 GCGAGGAAAACACGGAGAGA 60.039 55.000 0.00 0.00 33.58 3.10
632 668 2.514824 GCGGGAATGAGTGAGGGC 60.515 66.667 0.00 0.00 0.00 5.19
636 672 0.179111 GATGACGCGGGAATGAGTGA 60.179 55.000 12.47 0.00 0.00 3.41
637 673 1.154205 GGATGACGCGGGAATGAGTG 61.154 60.000 12.47 0.00 0.00 3.51
638 674 1.144057 GGATGACGCGGGAATGAGT 59.856 57.895 12.47 0.00 0.00 3.41
639 675 1.951130 CGGATGACGCGGGAATGAG 60.951 63.158 12.47 0.00 34.82 2.90
640 676 2.106131 CGGATGACGCGGGAATGA 59.894 61.111 12.47 0.00 34.82 2.57
666 702 2.892425 GAGCAGATCCCAACGCCG 60.892 66.667 0.00 0.00 0.00 6.46
667 703 1.817099 CAGAGCAGATCCCAACGCC 60.817 63.158 0.00 0.00 0.00 5.68
668 704 2.467826 GCAGAGCAGATCCCAACGC 61.468 63.158 0.00 0.00 0.00 4.84
669 705 0.461548 TAGCAGAGCAGATCCCAACG 59.538 55.000 0.00 0.00 0.00 4.10
670 706 2.237393 CTAGCAGAGCAGATCCCAAC 57.763 55.000 0.00 0.00 0.00 3.77
683 719 6.615264 ACATTGTAATTGATCTGCTAGCAG 57.385 37.500 34.48 34.48 44.86 4.24
684 720 8.504812 TTTACATTGTAATTGATCTGCTAGCA 57.495 30.769 18.22 18.22 0.00 3.49
685 721 8.072567 CCTTTACATTGTAATTGATCTGCTAGC 58.927 37.037 8.10 8.10 0.00 3.42
686 722 8.562892 CCCTTTACATTGTAATTGATCTGCTAG 58.437 37.037 9.95 1.34 0.00 3.42
687 723 8.052748 ACCCTTTACATTGTAATTGATCTGCTA 58.947 33.333 9.95 0.00 0.00 3.49
688 724 6.891908 ACCCTTTACATTGTAATTGATCTGCT 59.108 34.615 9.95 0.00 0.00 4.24
689 725 6.974622 CACCCTTTACATTGTAATTGATCTGC 59.025 38.462 9.95 0.00 0.00 4.26
690 726 7.483307 CCACCCTTTACATTGTAATTGATCTG 58.517 38.462 9.95 2.52 0.00 2.90
691 727 6.096846 GCCACCCTTTACATTGTAATTGATCT 59.903 38.462 9.95 0.00 0.00 2.75
692 728 6.127479 TGCCACCCTTTACATTGTAATTGATC 60.127 38.462 9.95 0.00 0.00 2.92
693 729 5.719085 TGCCACCCTTTACATTGTAATTGAT 59.281 36.000 9.95 0.00 0.00 2.57
694 730 5.080337 TGCCACCCTTTACATTGTAATTGA 58.920 37.500 9.95 0.00 0.00 2.57
695 731 5.398603 TGCCACCCTTTACATTGTAATTG 57.601 39.130 9.95 6.60 0.00 2.32
696 732 6.426646 TTTGCCACCCTTTACATTGTAATT 57.573 33.333 9.95 0.00 0.00 1.40
697 733 6.426646 TTTTGCCACCCTTTACATTGTAAT 57.573 33.333 9.95 0.00 0.00 1.89
698 734 5.871396 TTTTGCCACCCTTTACATTGTAA 57.129 34.783 5.14 5.14 0.00 2.41
699 735 7.397476 TGATATTTTGCCACCCTTTACATTGTA 59.603 33.333 0.00 0.00 0.00 2.41
700 736 4.972751 ATTTTGCCACCCTTTACATTGT 57.027 36.364 0.00 0.00 0.00 2.71
701 737 6.638610 TGATATTTTGCCACCCTTTACATTG 58.361 36.000 0.00 0.00 0.00 2.82
702 738 6.865834 TGATATTTTGCCACCCTTTACATT 57.134 33.333 0.00 0.00 0.00 2.71
703 739 6.865834 TTGATATTTTGCCACCCTTTACAT 57.134 33.333 0.00 0.00 0.00 2.29
704 740 6.268847 ACTTTGATATTTTGCCACCCTTTACA 59.731 34.615 0.00 0.00 0.00 2.41
705 741 6.589907 CACTTTGATATTTTGCCACCCTTTAC 59.410 38.462 0.00 0.00 0.00 2.01
706 742 6.696411 CACTTTGATATTTTGCCACCCTTTA 58.304 36.000 0.00 0.00 0.00 1.85
707 743 5.550290 CACTTTGATATTTTGCCACCCTTT 58.450 37.500 0.00 0.00 0.00 3.11
708 744 4.563374 GCACTTTGATATTTTGCCACCCTT 60.563 41.667 0.00 0.00 0.00 3.95
709 745 3.055891 GCACTTTGATATTTTGCCACCCT 60.056 43.478 0.00 0.00 0.00 4.34
710 746 3.055891 AGCACTTTGATATTTTGCCACCC 60.056 43.478 0.00 0.00 33.48 4.61
711 747 4.192429 AGCACTTTGATATTTTGCCACC 57.808 40.909 0.00 0.00 33.48 4.61
712 748 7.832503 ATTTAGCACTTTGATATTTTGCCAC 57.167 32.000 0.00 0.00 33.48 5.01
713 749 9.585099 CTTATTTAGCACTTTGATATTTTGCCA 57.415 29.630 0.00 0.00 33.48 4.92
714 750 9.586435 ACTTATTTAGCACTTTGATATTTTGCC 57.414 29.630 0.00 0.00 33.48 4.52
719 755 8.686334 CCACCACTTATTTAGCACTTTGATATT 58.314 33.333 0.00 0.00 0.00 1.28
720 756 7.201821 GCCACCACTTATTTAGCACTTTGATAT 60.202 37.037 0.00 0.00 0.00 1.63
721 757 6.094881 GCCACCACTTATTTAGCACTTTGATA 59.905 38.462 0.00 0.00 0.00 2.15
722 758 5.105756 GCCACCACTTATTTAGCACTTTGAT 60.106 40.000 0.00 0.00 0.00 2.57
723 759 4.217550 GCCACCACTTATTTAGCACTTTGA 59.782 41.667 0.00 0.00 0.00 2.69
724 760 4.022416 TGCCACCACTTATTTAGCACTTTG 60.022 41.667 0.00 0.00 0.00 2.77
725 761 4.148838 TGCCACCACTTATTTAGCACTTT 58.851 39.130 0.00 0.00 0.00 2.66
726 762 3.761897 TGCCACCACTTATTTAGCACTT 58.238 40.909 0.00 0.00 0.00 3.16
727 763 3.433306 TGCCACCACTTATTTAGCACT 57.567 42.857 0.00 0.00 0.00 4.40
728 764 4.513198 TTTGCCACCACTTATTTAGCAC 57.487 40.909 0.00 0.00 0.00 4.40
729 765 5.537300 TTTTTGCCACCACTTATTTAGCA 57.463 34.783 0.00 0.00 0.00 3.49
748 784 1.834896 GGGCCGGGGTATTTGATTTTT 59.165 47.619 2.18 0.00 0.00 1.94
749 785 1.007842 AGGGCCGGGGTATTTGATTTT 59.992 47.619 2.18 0.00 0.00 1.82
750 786 0.634465 AGGGCCGGGGTATTTGATTT 59.366 50.000 2.18 0.00 0.00 2.17
751 787 0.634465 AAGGGCCGGGGTATTTGATT 59.366 50.000 2.18 0.00 0.00 2.57
752 788 0.106217 CAAGGGCCGGGGTATTTGAT 60.106 55.000 2.18 0.00 0.00 2.57
753 789 1.208844 TCAAGGGCCGGGGTATTTGA 61.209 55.000 2.18 0.00 0.00 2.69
754 790 0.323908 TTCAAGGGCCGGGGTATTTG 60.324 55.000 2.18 0.00 0.00 2.32
755 791 0.033503 CTTCAAGGGCCGGGGTATTT 60.034 55.000 2.18 0.00 0.00 1.40
756 792 1.613061 CTTCAAGGGCCGGGGTATT 59.387 57.895 2.18 0.00 0.00 1.89
757 793 3.056754 GCTTCAAGGGCCGGGGTAT 62.057 63.158 2.18 0.00 0.00 2.73
758 794 3.723922 GCTTCAAGGGCCGGGGTA 61.724 66.667 2.18 0.00 0.00 3.69
812 848 3.450043 AACCAACCGTCCTTCGCGT 62.450 57.895 5.77 0.00 38.35 6.01
820 856 1.865340 GTTCTGTCTGAACCAACCGTC 59.135 52.381 10.65 0.00 46.89 4.79
850 886 2.420890 CGAGATGGCTCCTCCTGC 59.579 66.667 0.00 0.00 37.91 4.85
851 887 3.136750 CCGAGATGGCTCCTCCTG 58.863 66.667 0.00 0.00 37.91 3.86
1109 1149 0.247460 CTCATCAGCGGTCTCCACAA 59.753 55.000 0.00 0.00 0.00 3.33
1512 1799 4.065088 GCGGCATAATAATGGAAGACTCA 58.935 43.478 0.00 0.00 33.38 3.41
1566 1853 4.898861 ACTGGCAGTAAAAAGGAAAATCCA 59.101 37.500 20.61 0.00 39.61 3.41
1721 2013 4.158394 TCAGAAATGCCATGAACTTTAGCC 59.842 41.667 0.00 0.00 0.00 3.93
1857 2149 2.836981 ACAGTTCCCTCATCTTCCTCAG 59.163 50.000 0.00 0.00 0.00 3.35
1892 2184 2.352503 AGCGATTGTAAACGTACGGT 57.647 45.000 21.06 11.03 32.40 4.83
1898 2190 4.271049 AGGATGATCAAGCGATTGTAAACG 59.729 41.667 13.85 0.00 29.66 3.60
1907 2199 2.702478 AGAATGGAGGATGATCAAGCGA 59.298 45.455 0.00 0.00 0.00 4.93
2039 2331 3.118445 TCGCCACTCCATCAATATTGTGA 60.118 43.478 14.97 9.43 0.00 3.58
2235 2527 3.886123 CCTTTCCAAGGTACCCATACAG 58.114 50.000 8.74 0.00 43.95 2.74
2565 2857 4.233789 GTGTTCACAGCTTGTTTCACAAA 58.766 39.130 0.00 0.00 37.69 2.83
2689 2981 7.440523 ACTTTCTTCGCATTTTCTAAGTCAT 57.559 32.000 0.00 0.00 0.00 3.06
2696 2988 5.580297 TGCAAAAACTTTCTTCGCATTTTCT 59.420 32.000 0.00 0.00 0.00 2.52
2874 3166 1.511464 GTACGTCAGACGAGCCACG 60.511 63.158 29.53 1.64 46.05 4.94
2875 3167 1.511464 CGTACGTCAGACGAGCCAC 60.511 63.158 29.53 17.82 46.05 5.01
2876 3168 2.683859 CCGTACGTCAGACGAGCCA 61.684 63.158 29.53 8.43 46.05 4.75
2877 3169 2.099831 CCGTACGTCAGACGAGCC 59.900 66.667 29.53 14.28 46.05 4.70
2878 3170 2.576317 GCCGTACGTCAGACGAGC 60.576 66.667 29.53 20.07 46.05 5.03
2879 3171 2.099831 GGCCGTACGTCAGACGAG 59.900 66.667 29.53 18.07 46.05 4.18
2880 3172 3.434319 GGGCCGTACGTCAGACGA 61.434 66.667 29.53 10.29 46.05 4.20
2882 3174 2.126189 GTGGGCCGTACGTCAGAC 60.126 66.667 15.21 0.25 0.00 3.51
2883 3175 2.598099 TGTGGGCCGTACGTCAGA 60.598 61.111 15.21 5.46 0.00 3.27
2884 3176 2.431942 GTGTGGGCCGTACGTCAG 60.432 66.667 15.21 0.00 0.00 3.51
2885 3177 3.225061 TGTGTGGGCCGTACGTCA 61.225 61.111 15.21 6.80 0.00 4.35
2886 3178 2.735857 GTGTGTGGGCCGTACGTC 60.736 66.667 15.21 0.00 0.00 4.34
2887 3179 3.228759 AGTGTGTGGGCCGTACGT 61.229 61.111 15.21 0.00 0.00 3.57
2888 3180 2.736995 CAGTGTGTGGGCCGTACG 60.737 66.667 8.69 8.69 0.00 3.67
2889 3181 1.666872 GTCAGTGTGTGGGCCGTAC 60.667 63.158 0.00 0.29 0.00 3.67
2890 3182 2.738480 GTCAGTGTGTGGGCCGTA 59.262 61.111 0.00 0.00 0.00 4.02
2891 3183 4.602259 CGTCAGTGTGTGGGCCGT 62.602 66.667 0.00 0.00 0.00 5.68
2892 3184 4.602259 ACGTCAGTGTGTGGGCCG 62.602 66.667 0.00 0.00 0.00 6.13
2893 3185 2.972505 CACGTCAGTGTGTGGGCC 60.973 66.667 0.00 0.00 43.15 5.80
2915 3207 3.797353 CTGATGGGTGGGTCCGGG 61.797 72.222 0.00 0.00 37.00 5.73
2916 3208 4.489771 GCTGATGGGTGGGTCCGG 62.490 72.222 0.00 0.00 37.00 5.14
2917 3209 4.838152 CGCTGATGGGTGGGTCCG 62.838 72.222 0.00 0.00 37.00 4.79
2918 3210 4.489771 CCGCTGATGGGTGGGTCC 62.490 72.222 0.00 0.00 33.59 4.46
2923 3215 4.738998 TTGGGCCGCTGATGGGTG 62.739 66.667 0.00 0.00 0.00 4.61
2924 3216 4.740822 GTTGGGCCGCTGATGGGT 62.741 66.667 0.00 0.00 0.00 4.51
2927 3219 3.673956 TACCGTTGGGCCGCTGATG 62.674 63.158 0.00 0.00 36.48 3.07
2928 3220 3.385749 CTACCGTTGGGCCGCTGAT 62.386 63.158 0.00 0.00 36.48 2.90
2929 3221 4.077184 CTACCGTTGGGCCGCTGA 62.077 66.667 0.00 0.00 36.48 4.26
2942 3234 3.531207 GACGTACGGCCCCCTACC 61.531 72.222 21.06 0.00 0.00 3.18
2943 3235 2.755469 TGACGTACGGCCCCCTAC 60.755 66.667 20.48 0.38 0.00 3.18
2944 3236 2.440796 CTGACGTACGGCCCCCTA 60.441 66.667 20.48 0.00 0.00 3.53
2949 3241 3.148031 GATCCCCTGACGTACGGCC 62.148 68.421 20.48 10.81 0.00 6.13
2950 3242 2.416260 GATCCCCTGACGTACGGC 59.584 66.667 21.06 18.72 0.00 5.68
2951 3243 2.842256 CGGATCCCCTGACGTACGG 61.842 68.421 21.06 1.19 0.00 4.02
2952 3244 2.719979 CGGATCCCCTGACGTACG 59.280 66.667 15.01 15.01 0.00 3.67
2953 3245 3.126528 CCGGATCCCCTGACGTAC 58.873 66.667 6.06 0.00 0.00 3.67
2954 3246 2.836360 GCCGGATCCCCTGACGTA 60.836 66.667 5.05 0.00 0.00 3.57
2955 3247 4.779733 AGCCGGATCCCCTGACGT 62.780 66.667 5.05 0.00 0.00 4.34
2956 3248 3.917760 GAGCCGGATCCCCTGACG 61.918 72.222 9.02 0.00 0.00 4.35
2957 3249 3.551407 GGAGCCGGATCCCCTGAC 61.551 72.222 28.96 0.78 32.79 3.51
2958 3250 4.088351 TGGAGCCGGATCCCCTGA 62.088 66.667 34.85 14.76 38.72 3.86
2959 3251 3.554342 CTGGAGCCGGATCCCCTG 61.554 72.222 34.85 20.89 38.72 4.45
2970 3262 2.285824 AGTCTCAGAAGGCTGGAGC 58.714 57.895 6.30 0.00 42.53 4.70
2975 3267 3.326006 TGTTCAATCAGTCTCAGAAGGCT 59.674 43.478 0.00 0.00 38.23 4.58
2976 3268 3.668447 TGTTCAATCAGTCTCAGAAGGC 58.332 45.455 0.00 0.00 0.00 4.35
2977 3269 4.892433 ACTGTTCAATCAGTCTCAGAAGG 58.108 43.478 0.00 0.00 44.07 3.46
2978 3270 6.450545 TGTACTGTTCAATCAGTCTCAGAAG 58.549 40.000 2.59 0.00 45.79 2.85
2979 3271 6.405278 TGTACTGTTCAATCAGTCTCAGAA 57.595 37.500 2.59 0.00 45.79 3.02
2980 3272 6.265422 TCTTGTACTGTTCAATCAGTCTCAGA 59.735 38.462 2.59 1.46 45.79 3.27
2981 3273 6.364706 GTCTTGTACTGTTCAATCAGTCTCAG 59.635 42.308 2.59 0.00 45.79 3.35
2982 3274 6.183360 TGTCTTGTACTGTTCAATCAGTCTCA 60.183 38.462 2.59 2.54 45.79 3.27
2983 3275 6.216569 TGTCTTGTACTGTTCAATCAGTCTC 58.783 40.000 2.59 0.25 45.79 3.36
3025 3317 1.270947 CCGGCAGTTGGTTAGTGGTTA 60.271 52.381 0.00 0.00 0.00 2.85
3026 3318 0.536460 CCGGCAGTTGGTTAGTGGTT 60.536 55.000 0.00 0.00 0.00 3.67
3027 3319 1.072505 CCGGCAGTTGGTTAGTGGT 59.927 57.895 0.00 0.00 0.00 4.16
3028 3320 1.674322 CCCGGCAGTTGGTTAGTGG 60.674 63.158 0.00 0.00 0.00 4.00
3029 3321 1.674322 CCCCGGCAGTTGGTTAGTG 60.674 63.158 0.00 0.00 0.00 2.74
3030 3322 2.754375 CCCCGGCAGTTGGTTAGT 59.246 61.111 0.00 0.00 0.00 2.24
3031 3323 2.750237 GCCCCGGCAGTTGGTTAG 60.750 66.667 0.00 0.00 41.49 2.34
3043 3335 1.211949 TCCTAATCCTTCAAAGCCCCG 59.788 52.381 0.00 0.00 0.00 5.73
3138 3430 3.073678 TGCACATGTTCATGTACCACTC 58.926 45.455 16.44 4.98 32.74 3.51
3188 3483 0.323360 GGCAACCTGCTTGGATACCA 60.323 55.000 3.40 0.00 44.28 3.25
3206 3501 2.906691 TTGACCATGCAAGTTTTGGG 57.093 45.000 8.12 0.00 34.72 4.12
3276 3571 3.746045 AACAAAGACTCGCTGACCTAA 57.254 42.857 0.00 0.00 0.00 2.69
3284 3579 7.988904 ACTATACATTCTAACAAAGACTCGC 57.011 36.000 0.00 0.00 32.51 5.03
3386 3685 3.139397 TGACTGGTGTAATTTCCCTTGGT 59.861 43.478 0.00 0.00 0.00 3.67
3408 3707 3.644966 TCTTGGAAGTGTTTGTCCAGT 57.355 42.857 0.00 0.00 44.61 4.00
3460 3760 7.715686 ACATGTAACATGTCTATCTAGTCTCGA 59.284 37.037 0.00 0.00 0.00 4.04
3659 3967 0.327924 TGGATGGGTCAGCGTCAAAT 59.672 50.000 0.00 0.00 0.00 2.32
3700 6498 4.086457 GGTCCAAAAGTATCACCATTGGT 58.914 43.478 1.37 1.37 41.02 3.67
3747 6545 4.992319 CACCGAACAACAGGAAACACTATA 59.008 41.667 0.00 0.00 0.00 1.31
3748 6546 3.813166 CACCGAACAACAGGAAACACTAT 59.187 43.478 0.00 0.00 0.00 2.12
3951 6772 4.116747 ACATGCAGCAGTACTCTACTTC 57.883 45.455 0.00 0.00 36.76 3.01
3952 6773 4.499183 GAACATGCAGCAGTACTCTACTT 58.501 43.478 0.00 0.00 36.76 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.