Multiple sequence alignment - TraesCS7A01G296200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G296200 chr7A 100.000 3123 0 0 1 3123 394426971 394423849 0.000000e+00 5768.0
1 TraesCS7A01G296200 chr7A 96.424 1622 56 2 1503 3123 394403969 394402349 0.000000e+00 2673.0
2 TraesCS7A01G296200 chr7A 97.215 1508 40 2 1 1507 394419490 394417984 0.000000e+00 2551.0
3 TraesCS7A01G296200 chr7A 90.650 631 48 8 2502 3123 340494083 340493455 0.000000e+00 828.0
4 TraesCS7A01G296200 chr7A 88.786 651 48 18 2494 3123 412675036 412675682 0.000000e+00 774.0
5 TraesCS7A01G296200 chr7A 88.739 222 21 3 2073 2293 295070781 295070999 5.130000e-68 268.0
6 TraesCS7A01G296200 chr7A 91.791 134 8 2 2161 2293 295092465 295092596 1.910000e-42 183.0
7 TraesCS7A01G296200 chr7A 93.000 100 5 2 2412 2509 458627829 458627928 9.030000e-31 145.0
8 TraesCS7A01G296200 chr7A 91.489 94 6 2 2428 2520 493167249 493167157 9.090000e-26 128.0
9 TraesCS7A01G296200 chr7A 82.836 134 14 8 2443 2570 478045939 478045809 9.160000e-21 111.0
10 TraesCS7A01G296200 chr7A 95.588 68 3 0 2442 2509 232434163 232434230 3.290000e-20 110.0
11 TraesCS7A01G296200 chr7A 81.618 136 16 8 2441 2570 478053881 478053749 1.530000e-18 104.0
12 TraesCS7A01G296200 chr7A 94.118 51 3 0 2299 2349 186227017 186227067 9.290000e-11 78.7
13 TraesCS7A01G296200 chr3A 90.956 1957 127 32 1 1947 220026183 220024267 0.000000e+00 2588.0
14 TraesCS7A01G296200 chr3A 90.904 1957 129 31 1 1947 220018108 220016191 0.000000e+00 2582.0
15 TraesCS7A01G296200 chr3A 94.221 1194 56 12 1938 3123 220016088 220014900 0.000000e+00 1810.0
16 TraesCS7A01G296200 chr3A 94.696 1169 51 10 1938 3099 220024164 220023000 0.000000e+00 1805.0
17 TraesCS7A01G296200 chr3A 91.318 622 45 7 2509 3123 372418366 372417747 0.000000e+00 841.0
18 TraesCS7A01G296200 chr3A 92.340 483 32 5 1938 2420 263720410 263720887 0.000000e+00 682.0
19 TraesCS7A01G296200 chr3A 91.097 483 40 3 1938 2420 263712380 263712859 0.000000e+00 651.0
20 TraesCS7A01G296200 chr3A 87.817 394 42 3 1554 1943 263711882 263712273 1.020000e-124 457.0
21 TraesCS7A01G296200 chr3A 85.678 398 51 4 1554 1947 263719912 263720307 6.230000e-112 414.0
22 TraesCS7A01G296200 chr4A 91.968 1494 105 14 1 1486 285254446 285252960 0.000000e+00 2080.0
23 TraesCS7A01G296200 chr4A 91.432 1494 114 13 1 1486 285275977 285274490 0.000000e+00 2037.0
24 TraesCS7A01G296200 chr4A 91.377 1496 113 14 1 1486 285268053 285266564 0.000000e+00 2034.0
25 TraesCS7A01G296200 chr4A 91.232 1494 117 13 1 1486 285262379 285260892 0.000000e+00 2021.0
26 TraesCS7A01G296200 chr4A 88.750 640 52 19 2494 3123 208448033 208447404 0.000000e+00 765.0
27 TraesCS7A01G296200 chr4A 88.235 255 26 3 2056 2310 378958515 378958765 5.060000e-78 302.0
28 TraesCS7A01G296200 chr4A 87.008 254 23 3 2057 2310 378950873 378951116 8.530000e-71 278.0
29 TraesCS7A01G296200 chr4A 93.289 149 7 3 1938 2086 294134616 294134761 1.890000e-52 217.0
30 TraesCS7A01G296200 chr4A 82.353 136 14 9 2238 2372 418006570 418006696 3.290000e-20 110.0
31 TraesCS7A01G296200 chr4A 87.059 85 8 2 1459 1541 166498683 166498766 3.320000e-15 93.5
32 TraesCS7A01G296200 chr4A 87.059 85 8 2 1459 1541 166506897 166506980 3.320000e-15 93.5
33 TraesCS7A01G296200 chr4A 100.000 31 0 0 1511 1541 169181378 169181408 1.210000e-04 58.4
34 TraesCS7A01G296200 chr2A 92.099 1329 93 10 1 1324 183919476 183918155 0.000000e+00 1862.0
35 TraesCS7A01G296200 chr2A 91.874 1329 96 10 1 1324 183927261 183925940 0.000000e+00 1845.0
36 TraesCS7A01G296200 chr2A 93.495 907 36 6 1938 2822 206910719 206909814 0.000000e+00 1327.0
37 TraesCS7A01G296200 chr2A 90.080 625 45 14 2509 3121 145737452 145736833 0.000000e+00 795.0
38 TraesCS7A01G296200 chr2A 92.449 490 36 1 1458 1947 206911310 206910822 0.000000e+00 699.0
39 TraesCS7A01G296200 chr2A 89.157 166 16 2 1938 2103 303844371 303844208 4.080000e-49 206.0
40 TraesCS7A01G296200 chr2A 100.000 31 0 0 1511 1541 101346847 101346817 1.210000e-04 58.4
41 TraesCS7A01G296200 chr2A 100.000 31 0 0 1511 1541 706108200 706108230 1.210000e-04 58.4
42 TraesCS7A01G296200 chr5A 87.367 1504 145 38 1 1486 24020919 24022395 0.000000e+00 1683.0
43 TraesCS7A01G296200 chr5A 92.160 1199 75 13 1938 3123 96332203 96331011 0.000000e+00 1676.0
44 TraesCS7A01G296200 chr5A 83.186 791 106 22 710 1486 199173399 199174176 0.000000e+00 699.0
45 TraesCS7A01G296200 chr5A 91.853 491 35 4 1459 1947 96332793 96332306 0.000000e+00 680.0
46 TraesCS7A01G296200 chr6A 89.236 641 47 21 2494 3123 87026849 87026220 0.000000e+00 782.0
47 TraesCS7A01G296200 chr6A 88.768 641 50 21 2494 3123 87018784 87018155 0.000000e+00 765.0
48 TraesCS7A01G296200 chr6A 88.995 627 50 16 2503 3123 178726775 178726162 0.000000e+00 758.0
49 TraesCS7A01G296200 chr6A 88.907 622 53 11 2505 3121 259503314 259503924 0.000000e+00 752.0
50 TraesCS7A01G296200 chr6A 88.006 642 54 22 2494 3123 185530126 185530756 0.000000e+00 737.0
51 TraesCS7A01G296200 chr6A 88.339 626 58 10 2500 3121 259496626 259497240 0.000000e+00 737.0
52 TraesCS7A01G296200 chr6A 87.869 643 51 24 2494 3123 354188326 354188954 0.000000e+00 730.0
53 TraesCS7A01G296200 chr6A 87.825 616 51 23 2494 3094 298587374 298586768 0.000000e+00 701.0
54 TraesCS7A01G296200 chr1A 89.219 640 48 20 2494 3122 124996988 124997617 0.000000e+00 780.0
55 TraesCS7A01G296200 chr1A 88.326 651 49 18 2494 3123 408615960 408615316 0.000000e+00 756.0
56 TraesCS7A01G296200 chr1A 88.099 647 50 20 2494 3122 408624236 408623599 0.000000e+00 743.0
57 TraesCS7A01G296200 chr1A 84.346 428 56 10 1526 1947 163668780 163669202 2.900000e-110 409.0
58 TraesCS7A01G296200 chr1A 85.788 387 48 5 1565 1947 428859563 428859180 1.350000e-108 403.0
59 TraesCS7A01G296200 chr1A 84.712 399 52 8 1554 1947 163695624 163696018 1.050000e-104 390.0
60 TraesCS7A01G296200 chr1A 91.250 80 5 2 2430 2509 60368038 60368115 1.180000e-19 108.0
61 TraesCS7A01G296200 chr5B 85.501 469 52 13 2624 3085 433659351 433659810 2.820000e-130 475.0
62 TraesCS7A01G296200 chr5B 84.861 251 24 7 2875 3123 617961941 617961703 1.120000e-59 241.0
63 TraesCS7A01G296200 chr5B 84.462 251 25 7 2875 3123 617944828 617944590 5.210000e-58 235.0
64 TraesCS7A01G296200 chr5B 82.800 250 30 7 2875 3123 81535324 81535561 8.770000e-51 211.0
65 TraesCS7A01G296200 chr5B 84.466 206 24 7 2600 2801 108354384 108354585 2.460000e-46 196.0
66 TraesCS7A01G296200 chrUn 88.000 250 23 6 2555 2800 318815235 318814989 3.940000e-74 289.0
67 TraesCS7A01G296200 chrUn 88.000 250 23 6 2555 2800 318825903 318826149 3.940000e-74 289.0
68 TraesCS7A01G296200 chrUn 88.000 250 23 6 2555 2800 356433749 356433503 3.940000e-74 289.0
69 TraesCS7A01G296200 chrUn 87.168 226 23 5 2875 3098 355684112 355683891 5.170000e-63 252.0
70 TraesCS7A01G296200 chrUn 84.980 253 30 6 2875 3123 294219616 294219368 1.860000e-62 250.0
71 TraesCS7A01G296200 chrUn 84.100 239 28 8 2885 3121 476857068 476856838 4.050000e-54 222.0
72 TraesCS7A01G296200 chrUn 86.256 211 18 9 2891 3099 437487106 437486905 5.240000e-53 219.0
73 TraesCS7A01G296200 chrUn 86.256 211 18 9 2891 3099 451912646 451912445 5.240000e-53 219.0
74 TraesCS7A01G296200 chrUn 83.333 234 18 15 2892 3122 47186241 47186026 2.460000e-46 196.0
75 TraesCS7A01G296200 chrUn 83.262 233 18 15 2892 3121 47178058 47177844 8.840000e-46 195.0
76 TraesCS7A01G296200 chrUn 81.657 169 16 10 2926 3085 118657721 118657559 3.270000e-25 126.0
77 TraesCS7A01G296200 chr1B 85.714 245 24 7 2875 3112 513357991 513357751 6.690000e-62 248.0
78 TraesCS7A01G296200 chr1B 84.462 251 25 7 2875 3123 448875356 448875118 5.210000e-58 235.0
79 TraesCS7A01G296200 chr1B 80.556 252 37 10 2624 2869 51846258 51846503 1.910000e-42 183.0
80 TraesCS7A01G296200 chr1B 79.608 255 40 11 2624 2873 210942121 210942368 4.140000e-39 172.0
81 TraesCS7A01G296200 chr4B 84.980 253 22 11 2875 3123 164077314 164077074 3.110000e-60 243.0
82 TraesCS7A01G296200 chr4B 84.585 253 23 11 2875 3123 164069445 164069205 1.450000e-58 237.0
83 TraesCS7A01G296200 chr4B 84.190 253 24 11 2875 3123 101992142 101992382 6.740000e-57 231.0
84 TraesCS7A01G296200 chr4B 86.256 211 18 9 2891 3099 449381301 449381502 5.240000e-53 219.0
85 TraesCS7A01G296200 chr4B 80.159 252 38 10 2624 2869 164253184 164253429 8.900000e-41 178.0
86 TraesCS7A01G296200 chr4B 80.488 246 36 10 2624 2863 164269163 164269402 8.900000e-41 178.0
87 TraesCS7A01G296200 chr4B 82.192 219 28 10 2636 2848 233703841 233704054 8.900000e-41 178.0
88 TraesCS7A01G296200 chr4B 82.609 207 29 5 2894 3098 8086073 8085872 3.200000e-40 176.0
89 TraesCS7A01G296200 chr4B 79.842 253 39 10 2624 2870 480392717 480392963 1.150000e-39 174.0
90 TraesCS7A01G296200 chr4B 80.169 237 37 9 2894 3122 30141936 30142170 5.360000e-38 169.0
91 TraesCS7A01G296200 chr4B 79.583 240 38 10 2639 2873 330226345 330226578 8.960000e-36 161.0
92 TraesCS7A01G296200 chr6D 85.806 155 19 3 2647 2800 75464963 75464811 8.960000e-36 161.0
93 TraesCS7A01G296200 chr6D 88.000 125 14 1 2625 2749 181921168 181921045 2.510000e-31 147.0
94 TraesCS7A01G296200 chr6D 81.283 187 27 7 2617 2800 315267984 315268165 9.030000e-31 145.0
95 TraesCS7A01G296200 chr6D 86.957 115 13 1 2635 2749 164256013 164256125 9.090000e-26 128.0
96 TraesCS7A01G296200 chr6D 86.957 115 13 1 2635 2749 230937748 230937860 9.090000e-26 128.0
97 TraesCS7A01G296200 chr4D 79.237 236 33 12 2635 2862 247719984 247720211 1.940000e-32 150.0
98 TraesCS7A01G296200 chr4D 93.443 61 2 2 2640 2700 226619237 226619179 4.290000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G296200 chr7A 394423849 394426971 3122 True 5768.0 5768 100.0000 1 3123 1 chr7A.!!$R4 3122
1 TraesCS7A01G296200 chr7A 394402349 394403969 1620 True 2673.0 2673 96.4240 1503 3123 1 chr7A.!!$R2 1620
2 TraesCS7A01G296200 chr7A 394417984 394419490 1506 True 2551.0 2551 97.2150 1 1507 1 chr7A.!!$R3 1506
3 TraesCS7A01G296200 chr7A 340493455 340494083 628 True 828.0 828 90.6500 2502 3123 1 chr7A.!!$R1 621
4 TraesCS7A01G296200 chr7A 412675036 412675682 646 False 774.0 774 88.7860 2494 3123 1 chr7A.!!$F5 629
5 TraesCS7A01G296200 chr3A 220023000 220026183 3183 True 2196.5 2588 92.8260 1 3099 2 chr3A.!!$R3 3098
6 TraesCS7A01G296200 chr3A 220014900 220018108 3208 True 2196.0 2582 92.5625 1 3123 2 chr3A.!!$R2 3122
7 TraesCS7A01G296200 chr3A 372417747 372418366 619 True 841.0 841 91.3180 2509 3123 1 chr3A.!!$R1 614
8 TraesCS7A01G296200 chr3A 263711882 263712859 977 False 554.0 651 89.4570 1554 2420 2 chr3A.!!$F1 866
9 TraesCS7A01G296200 chr3A 263719912 263720887 975 False 548.0 682 89.0090 1554 2420 2 chr3A.!!$F2 866
10 TraesCS7A01G296200 chr4A 285252960 285254446 1486 True 2080.0 2080 91.9680 1 1486 1 chr4A.!!$R2 1485
11 TraesCS7A01G296200 chr4A 285274490 285275977 1487 True 2037.0 2037 91.4320 1 1486 1 chr4A.!!$R5 1485
12 TraesCS7A01G296200 chr4A 285266564 285268053 1489 True 2034.0 2034 91.3770 1 1486 1 chr4A.!!$R4 1485
13 TraesCS7A01G296200 chr4A 285260892 285262379 1487 True 2021.0 2021 91.2320 1 1486 1 chr4A.!!$R3 1485
14 TraesCS7A01G296200 chr4A 208447404 208448033 629 True 765.0 765 88.7500 2494 3123 1 chr4A.!!$R1 629
15 TraesCS7A01G296200 chr2A 183918155 183919476 1321 True 1862.0 1862 92.0990 1 1324 1 chr2A.!!$R3 1323
16 TraesCS7A01G296200 chr2A 183925940 183927261 1321 True 1845.0 1845 91.8740 1 1324 1 chr2A.!!$R4 1323
17 TraesCS7A01G296200 chr2A 206909814 206911310 1496 True 1013.0 1327 92.9720 1458 2822 2 chr2A.!!$R6 1364
18 TraesCS7A01G296200 chr2A 145736833 145737452 619 True 795.0 795 90.0800 2509 3121 1 chr2A.!!$R2 612
19 TraesCS7A01G296200 chr5A 24020919 24022395 1476 False 1683.0 1683 87.3670 1 1486 1 chr5A.!!$F1 1485
20 TraesCS7A01G296200 chr5A 96331011 96332793 1782 True 1178.0 1676 92.0065 1459 3123 2 chr5A.!!$R1 1664
21 TraesCS7A01G296200 chr5A 199173399 199174176 777 False 699.0 699 83.1860 710 1486 1 chr5A.!!$F2 776
22 TraesCS7A01G296200 chr6A 87026220 87026849 629 True 782.0 782 89.2360 2494 3123 1 chr6A.!!$R2 629
23 TraesCS7A01G296200 chr6A 87018155 87018784 629 True 765.0 765 88.7680 2494 3123 1 chr6A.!!$R1 629
24 TraesCS7A01G296200 chr6A 178726162 178726775 613 True 758.0 758 88.9950 2503 3123 1 chr6A.!!$R3 620
25 TraesCS7A01G296200 chr6A 259503314 259503924 610 False 752.0 752 88.9070 2505 3121 1 chr6A.!!$F3 616
26 TraesCS7A01G296200 chr6A 185530126 185530756 630 False 737.0 737 88.0060 2494 3123 1 chr6A.!!$F1 629
27 TraesCS7A01G296200 chr6A 259496626 259497240 614 False 737.0 737 88.3390 2500 3121 1 chr6A.!!$F2 621
28 TraesCS7A01G296200 chr6A 354188326 354188954 628 False 730.0 730 87.8690 2494 3123 1 chr6A.!!$F4 629
29 TraesCS7A01G296200 chr6A 298586768 298587374 606 True 701.0 701 87.8250 2494 3094 1 chr6A.!!$R4 600
30 TraesCS7A01G296200 chr1A 124996988 124997617 629 False 780.0 780 89.2190 2494 3122 1 chr1A.!!$F2 628
31 TraesCS7A01G296200 chr1A 408615316 408615960 644 True 756.0 756 88.3260 2494 3123 1 chr1A.!!$R1 629
32 TraesCS7A01G296200 chr1A 408623599 408624236 637 True 743.0 743 88.0990 2494 3122 1 chr1A.!!$R2 628

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
332 336 0.034059 AGGTATCGCAGCATAGGCAC 59.966 55.0 0.67 0.0 44.61 5.01 F
1768 1835 0.246912 CGCTGCTCGTTCGATGAAAC 60.247 55.0 0.00 0.0 0.00 2.78 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1845 1912 0.030908 CCACCGCCGTTTTGCTTTTA 59.969 50.000 0.0 0.0 0.0 1.52 R
2835 3167 4.919754 CGCCTTCTCATTTCCTTCTTTTTG 59.080 41.667 0.0 0.0 0.0 2.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
220 222 1.041437 ACGCTATAAGAGGGGCTGAC 58.959 55.000 0.00 0.00 42.42 3.51
332 336 0.034059 AGGTATCGCAGCATAGGCAC 59.966 55.000 0.67 0.00 44.61 5.01
394 399 4.039245 TGATTTCGAGGGTATGGTCATCTC 59.961 45.833 0.00 0.00 0.00 2.75
397 402 1.333177 GAGGGTATGGTCATCTCGCT 58.667 55.000 5.76 5.76 0.00 4.93
560 575 3.293337 ACACATAAGCATGGCATGATGT 58.707 40.909 30.69 25.16 36.39 3.06
638 654 7.523219 CACAAACAACACTACAAGTTAAGTGA 58.477 34.615 19.29 0.00 44.79 3.41
909 934 5.630061 CGAATGACATGTGCAAGTTTATGA 58.370 37.500 1.15 0.00 0.00 2.15
1137 1196 1.526575 ATGTCGGTGGCAAGGCAAAG 61.527 55.000 2.67 0.00 0.00 2.77
1140 1199 2.199652 CGGTGGCAAGGCAAAGGAA 61.200 57.895 0.00 0.00 0.00 3.36
1184 1245 0.596600 GACACGGAGCAAACACGAGA 60.597 55.000 0.00 0.00 0.00 4.04
1637 1703 1.480954 GCGTCCCAGAATGAGTAAGGA 59.519 52.381 0.00 0.00 39.69 3.36
1643 1709 6.004574 GTCCCAGAATGAGTAAGGAAAAAGT 58.995 40.000 0.00 0.00 39.69 2.66
1762 1828 4.357947 AAGGCGCTGCTCGTTCGA 62.358 61.111 7.64 0.00 41.07 3.71
1768 1835 0.246912 CGCTGCTCGTTCGATGAAAC 60.247 55.000 0.00 0.00 0.00 2.78
1782 1849 6.067263 TCGATGAAACGGAAAGAAAACAAT 57.933 33.333 0.00 0.00 0.00 2.71
1806 1873 1.818363 CAGCAGGCATCGCAGACAT 60.818 57.895 0.00 0.00 42.51 3.06
1845 1912 4.479993 GGCCGGAGATGCAGCAGT 62.480 66.667 5.05 0.00 0.00 4.40
1862 1929 1.026584 AGTAAAAGCAAAACGGCGGT 58.973 45.000 13.24 0.00 39.27 5.68
2147 2438 3.081409 GGAGGTAAGGAGGCGGCA 61.081 66.667 13.08 0.00 0.00 5.69
2176 2467 2.206900 TGGTGCTGGGAGGAAGGA 59.793 61.111 0.00 0.00 0.00 3.36
2253 2563 3.728373 GGGGGTTGCGTGGGATCT 61.728 66.667 0.00 0.00 0.00 2.75
2533 2849 8.095452 TCTCTCTCCCTCTAATTTGCTTTAAT 57.905 34.615 0.00 0.00 0.00 1.40
2835 3167 1.079503 CGGGACTAGCAAAAGACAGC 58.920 55.000 0.00 0.00 0.00 4.40
2987 3325 6.427853 TGTTGTAAAGAGAATCACCATGTGAG 59.572 38.462 3.11 0.00 46.04 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
220 222 4.634004 TGATTGTCTATGTTACCGCTTTGG 59.366 41.667 0.00 0.00 46.41 3.28
332 336 1.085091 AGATGCTCGCTCTTTTGCTG 58.915 50.000 0.00 0.00 0.00 4.41
394 399 1.137404 CCTTGCGGGATTTCAAGCG 59.863 57.895 0.00 0.00 38.59 4.68
397 402 2.577606 TCTTCCTTGCGGGATTTCAA 57.422 45.000 0.00 0.00 44.66 2.69
560 575 5.110598 GGACATGCATCATATTTGTTTGCA 58.889 37.500 14.73 14.73 42.67 4.08
638 654 4.346734 CAACTCGTTGCATATTGAGCTT 57.653 40.909 0.00 0.00 33.45 3.74
669 686 7.359765 CGAACTAAATAAATCACGTGGTGTTCT 60.360 37.037 17.00 0.00 34.79 3.01
1137 1196 2.973082 GGTGCATGTTGCCCTTCC 59.027 61.111 0.00 0.00 44.23 3.46
1140 1199 2.115052 TTCGGTGCATGTTGCCCT 59.885 55.556 0.00 0.00 44.23 5.19
1184 1245 7.715657 ACCGAATGCATATGTTGTATGAAATT 58.284 30.769 0.00 0.00 30.30 1.82
1304 1365 4.279145 ACATGAACGACTACTCCCACTAT 58.721 43.478 0.00 0.00 0.00 2.12
1601 1667 0.387929 ACGCGACAAGTTCCTCTTCA 59.612 50.000 15.93 0.00 33.63 3.02
1637 1703 4.580580 AGCTTCATTGAACGAGGACTTTTT 59.419 37.500 0.00 0.00 0.00 1.94
1643 1709 1.544246 TCGAGCTTCATTGAACGAGGA 59.456 47.619 6.52 0.00 0.00 3.71
1762 1828 4.749598 GCCATTGTTTTCTTTCCGTTTCAT 59.250 37.500 0.00 0.00 0.00 2.57
1768 1835 2.061028 GCTGCCATTGTTTTCTTTCCG 58.939 47.619 0.00 0.00 0.00 4.30
1845 1912 0.030908 CCACCGCCGTTTTGCTTTTA 59.969 50.000 0.00 0.00 0.00 1.52
1862 1929 0.895530 CTGTCTAGTTTCGGGAGCCA 59.104 55.000 0.00 0.00 0.00 4.75
1949 2130 2.679716 GCCCAGAGCACCATCCTT 59.320 61.111 0.00 0.00 42.97 3.36
1969 2260 1.979155 CAGCTCGACCTCCTGTCCA 60.979 63.158 0.00 0.00 41.18 4.02
2147 2438 1.905843 AGCACCACGAGACTGCTCT 60.906 57.895 0.00 0.00 36.50 4.09
2253 2563 0.178915 TCTCGACCCCTTTTCCTCCA 60.179 55.000 0.00 0.00 0.00 3.86
2835 3167 4.919754 CGCCTTCTCATTTCCTTCTTTTTG 59.080 41.667 0.00 0.00 0.00 2.44
2987 3325 5.313712 TCAGTCCATTTAAACTGAGGGAAC 58.686 41.667 4.02 0.00 45.18 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.