Multiple sequence alignment - TraesCS7A01G296000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G296000 chr7A 100.000 5156 0 0 1 5156 392912446 392917601 0.000000e+00 9522.0
1 TraesCS7A01G296000 chr7A 81.238 517 82 10 1 509 485493435 485493944 2.240000e-108 403.0
2 TraesCS7A01G296000 chr7D 95.698 4719 154 23 125 4819 364412269 364407576 0.000000e+00 7544.0
3 TraesCS7A01G296000 chr7B 96.810 3542 87 12 1577 5093 323849505 323845965 0.000000e+00 5891.0
4 TraesCS7A01G296000 chr7B 94.882 1016 27 12 551 1548 323850789 323849781 0.000000e+00 1565.0
5 TraesCS7A01G296000 chr7B 94.521 73 4 0 5084 5156 323844550 323844478 4.220000e-21 113.0
6 TraesCS7A01G296000 chr7B 97.959 49 1 0 1545 1593 323849700 323849652 9.200000e-13 86.1
7 TraesCS7A01G296000 chr1D 83.457 538 76 7 2 530 305219585 305220118 6.000000e-134 488.0
8 TraesCS7A01G296000 chr1D 82.342 521 70 15 1 509 237809171 237808661 2.850000e-117 433.0
9 TraesCS7A01G296000 chr2A 83.527 516 77 5 1 508 480027461 480027976 4.670000e-130 475.0
10 TraesCS7A01G296000 chr2A 81.696 519 83 11 1 509 728838635 728838119 6.170000e-114 422.0
11 TraesCS7A01G296000 chr2A 80.748 535 95 6 1 527 728808159 728807625 1.340000e-110 411.0
12 TraesCS7A01G296000 chr2A 80.000 160 26 5 355 509 88851974 88852132 4.220000e-21 113.0
13 TraesCS7A01G296000 chr4A 82.979 517 74 10 1 509 485457924 485457414 6.090000e-124 455.0
14 TraesCS7A01G296000 chr1B 81.925 509 81 7 26 526 412252709 412252204 2.220000e-113 420.0
15 TraesCS7A01G296000 chr4D 84.703 353 44 6 1 347 94872718 94873066 1.370000e-90 344.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G296000 chr7A 392912446 392917601 5155 False 9522.000 9522 100.000 1 5156 1 chr7A.!!$F1 5155
1 TraesCS7A01G296000 chr7A 485493435 485493944 509 False 403.000 403 81.238 1 509 1 chr7A.!!$F2 508
2 TraesCS7A01G296000 chr7D 364407576 364412269 4693 True 7544.000 7544 95.698 125 4819 1 chr7D.!!$R1 4694
3 TraesCS7A01G296000 chr7B 323844478 323850789 6311 True 1913.775 5891 96.043 551 5156 4 chr7B.!!$R1 4605
4 TraesCS7A01G296000 chr1D 305219585 305220118 533 False 488.000 488 83.457 2 530 1 chr1D.!!$F1 528
5 TraesCS7A01G296000 chr1D 237808661 237809171 510 True 433.000 433 82.342 1 509 1 chr1D.!!$R1 508
6 TraesCS7A01G296000 chr2A 480027461 480027976 515 False 475.000 475 83.527 1 508 1 chr2A.!!$F2 507
7 TraesCS7A01G296000 chr2A 728838119 728838635 516 True 422.000 422 81.696 1 509 1 chr2A.!!$R2 508
8 TraesCS7A01G296000 chr2A 728807625 728808159 534 True 411.000 411 80.748 1 527 1 chr2A.!!$R1 526
9 TraesCS7A01G296000 chr4A 485457414 485457924 510 True 455.000 455 82.979 1 509 1 chr4A.!!$R1 508
10 TraesCS7A01G296000 chr1B 412252204 412252709 505 True 420.000 420 81.925 26 526 1 chr1B.!!$R1 500

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
544 559 0.875728 CGTCTTCGGTCAGTGTCTCT 59.124 55.000 0.0 0.0 0.00 3.10 F
1010 1035 0.459237 CTCGCAGTGATGGTGAGGAC 60.459 60.000 0.0 0.0 38.82 3.85 F
2035 2315 1.004044 CTGGACAGGAACAAGGAGCAT 59.996 52.381 0.0 0.0 0.00 3.79 F
2538 2819 1.005394 GTCTTCCGTTTCCCGCAGA 60.005 57.895 0.0 0.0 34.38 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2327 2607 0.527113 CGCATGAGGATTGTTGCCAA 59.473 50.000 0.00 0.00 34.45 4.52 R
2879 3160 6.743575 AGGCAGAGTTTGTGAATATAACAC 57.256 37.500 6.15 6.15 38.55 3.32 R
3186 3467 1.340248 GCCATTGCCATCTGAGGAATG 59.660 52.381 4.76 4.76 0.00 2.67 R
4188 4477 0.107945 CTTCTCTTGAGCTTCCCGGG 60.108 60.000 16.85 16.85 0.00 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 1.332686 CCATGATCGCAATGTGAGGTG 59.667 52.381 2.12 1.31 0.00 4.00
79 80 3.066291 TCGCAATGTGAGGTGGTTATT 57.934 42.857 0.00 0.00 0.00 1.40
94 95 5.507817 GGTGGTTATTGTATCGATGGTACGA 60.508 44.000 8.54 0.00 46.04 3.43
98 99 6.643770 GGTTATTGTATCGATGGTACGACATT 59.356 38.462 8.54 2.58 44.84 2.71
113 114 2.230025 CGACATTCAGACCTCTGTCACT 59.770 50.000 2.25 0.00 44.33 3.41
180 181 2.725312 GCGGCAGAGGAGGACATCA 61.725 63.158 0.00 0.00 0.00 3.07
212 214 4.266265 GCTTTTTCTTGCTCACTTGTTGAC 59.734 41.667 0.00 0.00 0.00 3.18
213 215 4.370364 TTTTCTTGCTCACTTGTTGACC 57.630 40.909 0.00 0.00 0.00 4.02
219 221 1.126846 GCTCACTTGTTGACCGATTCG 59.873 52.381 0.00 0.00 0.00 3.34
251 257 9.612066 TCATTCAATATTGCTCTACACATTGTA 57.388 29.630 10.76 0.00 0.00 2.41
272 279 4.123009 TCCGCATGCGCTGTCGTA 62.123 61.111 34.00 9.75 38.24 3.43
281 288 1.134936 TGCGCTGTCGTAATGTACCAT 60.135 47.619 9.73 0.00 38.14 3.55
297 304 1.932338 ACCATGGGATGAAGGAATGGT 59.068 47.619 18.09 0.00 44.80 3.55
408 422 6.870769 TGTACTAGACTAATTTGTAGGCCAC 58.129 40.000 5.01 1.31 0.00 5.01
499 514 5.310720 AGTTAATTGAAATCCGGCTTCAC 57.689 39.130 15.89 6.85 32.61 3.18
509 524 1.616374 TCCGGCTTCACATATATGCGA 59.384 47.619 12.79 5.97 0.00 5.10
510 525 2.036604 TCCGGCTTCACATATATGCGAA 59.963 45.455 12.79 13.46 0.00 4.70
523 538 8.281893 CACATATATGCGAACAACATTGTATGA 58.718 33.333 12.79 0.00 41.31 2.15
530 545 4.151689 CGAACAACATTGTATGACCGTCTT 59.848 41.667 0.00 0.00 41.31 3.01
531 546 5.607119 AACAACATTGTATGACCGTCTTC 57.393 39.130 0.00 0.00 41.31 2.87
543 558 3.386379 CGTCTTCGGTCAGTGTCTC 57.614 57.895 0.00 0.00 0.00 3.36
544 559 0.875728 CGTCTTCGGTCAGTGTCTCT 59.124 55.000 0.00 0.00 0.00 3.10
545 560 1.400371 CGTCTTCGGTCAGTGTCTCTG 60.400 57.143 0.00 0.00 44.85 3.35
573 588 2.203625 GCCCTTGCCCCTGTTTGA 60.204 61.111 0.00 0.00 0.00 2.69
730 746 1.407437 CCCAGTGCGGCTCTAAAATCT 60.407 52.381 4.00 0.00 0.00 2.40
735 751 0.880718 GCGGCTCTAAAATCTCCCCG 60.881 60.000 0.00 0.00 37.43 5.73
1010 1035 0.459237 CTCGCAGTGATGGTGAGGAC 60.459 60.000 0.00 0.00 38.82 3.85
1088 1113 2.034104 GCTGATGGCTCTGATCACAA 57.966 50.000 0.00 0.00 38.06 3.33
1327 1352 5.086621 AGGAATTCCTGTTGGCACTTATTT 58.913 37.500 26.52 0.00 46.55 1.40
1331 1356 6.909550 ATTCCTGTTGGCACTTATTTGTAA 57.090 33.333 0.00 0.00 0.00 2.41
1433 1464 9.530129 GTAACTCGAATTTCACTTCATAAACTG 57.470 33.333 0.00 0.00 0.00 3.16
1525 1558 5.181690 TGGTAATTTGACAGTTCAAGCAC 57.818 39.130 0.00 0.00 42.79 4.40
1810 2090 3.976015 AGAACACCCAAAGGACAAAAGA 58.024 40.909 0.00 0.00 36.73 2.52
2035 2315 1.004044 CTGGACAGGAACAAGGAGCAT 59.996 52.381 0.00 0.00 0.00 3.79
2284 2564 5.500234 CACCTAGAGATCCATTGGTTTTCA 58.500 41.667 1.86 0.00 0.00 2.69
2327 2607 3.448660 AGTGCTTCTTTTGACTGGCTTTT 59.551 39.130 0.00 0.00 0.00 2.27
2379 2659 9.947669 CAAGAATGATTTCATCAAGTAAGATCC 57.052 33.333 0.00 0.00 43.50 3.36
2538 2819 1.005394 GTCTTCCGTTTCCCGCAGA 60.005 57.895 0.00 0.00 34.38 4.26
2879 3160 6.523840 TGGTTTCTTCAATGAAATCCTTTGG 58.476 36.000 0.00 0.00 36.51 3.28
3151 3432 1.469079 GCCGCACAACCAAATATCCAC 60.469 52.381 0.00 0.00 0.00 4.02
3186 3467 2.267961 CCCTGGTACCGAAGCACC 59.732 66.667 7.57 0.00 35.24 5.01
3372 3653 0.391228 TCACGTACTTCCAGCTTGCA 59.609 50.000 0.00 0.00 0.00 4.08
3559 3840 7.752239 GGAAATATGCAGTTCATCAATTATCCG 59.248 37.037 9.12 0.00 36.63 4.18
3688 3977 6.859017 ACCACAACTTAAACTAAACACTTGG 58.141 36.000 0.00 0.00 0.00 3.61
3694 3983 5.650703 ACTTAAACTAAACACTTGGCACTGT 59.349 36.000 0.00 0.00 0.00 3.55
3900 4189 3.880490 TCAATATACCATTGGAACGTGGC 59.120 43.478 10.37 0.00 39.84 5.01
3948 4237 3.438087 CGATTTGCAGATCTGTCCTTTGT 59.562 43.478 23.38 4.45 0.00 2.83
4187 4476 0.691904 TGGTGACATCAGACATGGCA 59.308 50.000 0.00 0.00 34.08 4.92
4189 4478 3.556817 TGACATCAGACATGGCACC 57.443 52.632 0.00 0.00 30.96 5.01
4302 4595 8.039603 TCAAATTACATTATCGTGCAAGTTCT 57.960 30.769 0.00 0.00 0.00 3.01
4462 4755 0.976641 TGTGCTTACCTGGTGGAGAG 59.023 55.000 10.23 3.48 37.04 3.20
4556 4851 4.946157 AGTCATTGTCACATCCCAGATTTC 59.054 41.667 0.00 0.00 0.00 2.17
4627 4924 8.915654 CAGAAATACTTATGTTTGTTTGCCTTC 58.084 33.333 0.00 0.00 0.00 3.46
4801 5099 6.353082 CCCTAGTGATAGTTGGAATCAAACCT 60.353 42.308 0.00 0.00 35.23 3.50
4819 5117 1.454847 TCACAAAGCCCCACACCAC 60.455 57.895 0.00 0.00 0.00 4.16
4822 5120 0.110486 ACAAAGCCCCACACCACTAG 59.890 55.000 0.00 0.00 0.00 2.57
4884 5183 3.385111 CCTAGTGGGGTGAGCTAAGTAAG 59.615 52.174 0.00 0.00 0.00 2.34
4888 5187 4.466726 AGTGGGGTGAGCTAAGTAAGTAAG 59.533 45.833 0.00 0.00 0.00 2.34
4892 5191 6.497954 TGGGGTGAGCTAAGTAAGTAAGTAAA 59.502 38.462 0.00 0.00 0.00 2.01
4897 5196 9.872721 GTGAGCTAAGTAAGTAAGTAAAATCCT 57.127 33.333 0.00 0.00 0.00 3.24
4961 5260 9.573133 AAGACAAACTCACTGAAATTTAAACAG 57.427 29.630 4.31 4.31 37.62 3.16
5021 5321 1.440476 GGAATGCTCCATTGGCAGC 59.560 57.895 15.91 15.91 43.15 5.25
5031 5331 1.470285 CCATTGGCAGCTTTCCATTCG 60.470 52.381 5.37 0.00 32.92 3.34
5035 5335 0.526954 GGCAGCTTTCCATTCGCATG 60.527 55.000 0.00 0.00 0.00 4.06
5037 5337 1.904144 CAGCTTTCCATTCGCATGTG 58.096 50.000 0.00 0.00 0.00 3.21
5038 5338 0.813184 AGCTTTCCATTCGCATGTGG 59.187 50.000 6.39 0.00 36.82 4.17
5039 5339 0.810648 GCTTTCCATTCGCATGTGGA 59.189 50.000 6.39 2.26 42.55 4.02
5041 5341 1.402968 CTTTCCATTCGCATGTGGAGG 59.597 52.381 6.39 0.00 44.74 4.30
5042 5342 0.394216 TTCCATTCGCATGTGGAGGG 60.394 55.000 12.20 12.20 44.74 4.30
5043 5343 1.077501 CCATTCGCATGTGGAGGGT 60.078 57.895 10.20 0.00 37.72 4.34
5044 5344 1.097547 CCATTCGCATGTGGAGGGTC 61.098 60.000 10.20 0.00 37.72 4.46
5045 5345 1.097547 CATTCGCATGTGGAGGGTCC 61.098 60.000 6.39 0.00 36.96 4.46
5046 5346 1.274703 ATTCGCATGTGGAGGGTCCT 61.275 55.000 6.39 0.00 37.46 3.85
5047 5347 1.488705 TTCGCATGTGGAGGGTCCTT 61.489 55.000 6.39 0.00 37.46 3.36
5048 5348 1.746615 CGCATGTGGAGGGTCCTTG 60.747 63.158 0.00 0.00 37.46 3.61
5049 5349 2.048603 GCATGTGGAGGGTCCTTGC 61.049 63.158 0.00 0.00 37.46 4.01
5050 5350 1.379044 CATGTGGAGGGTCCTTGCC 60.379 63.158 0.00 0.00 37.46 4.52
5062 5373 0.178992 TCCTTGCCTCCTTGGTGTTG 60.179 55.000 0.00 0.00 38.35 3.33
5067 5378 0.250727 GCCTCCTTGGTGTTGCTACA 60.251 55.000 0.00 0.00 38.35 2.74
5099 6834 6.100004 AGGTTGTACTCATGAAACATCTACG 58.900 40.000 10.47 0.00 0.00 3.51
5100 6835 5.867716 GGTTGTACTCATGAAACATCTACGT 59.132 40.000 10.47 0.00 0.00 3.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 5.522456 TGTCGTACCATCGATACAATAACC 58.478 41.667 0.00 0.00 41.78 2.85
79 80 4.577283 TCTGAATGTCGTACCATCGATACA 59.423 41.667 0.00 0.00 41.78 2.29
94 95 4.835615 ACTTAGTGACAGAGGTCTGAATGT 59.164 41.667 13.99 0.00 46.59 2.71
98 99 5.128827 ACAAAACTTAGTGACAGAGGTCTGA 59.871 40.000 13.99 0.00 46.59 3.27
113 114 0.029567 CAACCGCGCCACAAAACTTA 59.970 50.000 0.00 0.00 0.00 2.24
180 181 7.267857 AGTGAGCAAGAAAAAGCAAAACTTAT 58.732 30.769 0.00 0.00 37.75 1.73
212 214 7.149080 GCAATATTGAATGAATGAACGAATCGG 60.149 37.037 19.73 0.00 0.00 4.18
213 215 7.588854 AGCAATATTGAATGAATGAACGAATCG 59.411 33.333 19.73 0.00 0.00 3.34
219 221 9.443283 GTGTAGAGCAATATTGAATGAATGAAC 57.557 33.333 19.73 4.78 0.00 3.18
272 279 9.981371 GACCATTCCTTCATCCCATGGTACATT 62.981 44.444 11.73 0.00 46.24 2.71
281 288 4.335735 AAATGACCATTCCTTCATCCCA 57.664 40.909 0.00 0.00 30.96 4.37
395 407 2.091541 CATCCACGTGGCCTACAAATT 58.908 47.619 30.25 2.67 34.44 1.82
401 413 1.280710 ACAAATCATCCACGTGGCCTA 59.719 47.619 30.25 16.67 34.44 3.93
408 422 5.883661 AGAAAATAGCACAAATCATCCACG 58.116 37.500 0.00 0.00 0.00 4.94
477 492 4.764823 TGTGAAGCCGGATTTCAATTAACT 59.235 37.500 19.50 0.00 36.41 2.24
489 504 1.616374 TCGCATATATGTGAAGCCGGA 59.384 47.619 23.43 2.43 43.60 5.14
499 514 7.746034 GGTCATACAATGTTGTTCGCATATATG 59.254 37.037 8.45 8.45 42.35 1.78
509 524 4.151689 CGAAGACGGTCATACAATGTTGTT 59.848 41.667 11.27 0.00 37.96 2.83
510 525 3.678072 CGAAGACGGTCATACAATGTTGT 59.322 43.478 11.27 3.64 39.28 3.32
535 550 3.181526 GCGCAAATAGTTCAGAGACACTG 60.182 47.826 0.30 0.00 46.97 3.66
536 551 2.996621 GCGCAAATAGTTCAGAGACACT 59.003 45.455 0.30 0.00 0.00 3.55
537 552 2.094417 GGCGCAAATAGTTCAGAGACAC 59.906 50.000 10.83 0.00 0.00 3.67
538 553 2.346803 GGCGCAAATAGTTCAGAGACA 58.653 47.619 10.83 0.00 0.00 3.41
539 554 1.666189 GGGCGCAAATAGTTCAGAGAC 59.334 52.381 10.83 0.00 0.00 3.36
540 555 1.555075 AGGGCGCAAATAGTTCAGAGA 59.445 47.619 10.83 0.00 0.00 3.10
541 556 2.029838 AGGGCGCAAATAGTTCAGAG 57.970 50.000 10.83 0.00 0.00 3.35
542 557 2.083774 CAAGGGCGCAAATAGTTCAGA 58.916 47.619 10.83 0.00 0.00 3.27
543 558 1.468054 GCAAGGGCGCAAATAGTTCAG 60.468 52.381 10.83 0.00 0.00 3.02
544 559 0.525761 GCAAGGGCGCAAATAGTTCA 59.474 50.000 10.83 0.00 0.00 3.18
545 560 0.179137 GGCAAGGGCGCAAATAGTTC 60.179 55.000 10.83 0.00 42.47 3.01
546 561 1.890174 GGCAAGGGCGCAAATAGTT 59.110 52.632 10.83 0.00 42.47 2.24
547 562 3.603365 GGCAAGGGCGCAAATAGT 58.397 55.556 10.83 0.00 42.47 2.12
1088 1113 2.291670 ACACGATCTCCCTCCTTGTACT 60.292 50.000 0.00 0.00 0.00 2.73
1223 1248 2.158959 CGAAGCCCTAACTCGTGCG 61.159 63.158 0.00 0.00 0.00 5.34
1327 1352 9.047371 TGCGCTTGCTTAGTTATAATAATTACA 57.953 29.630 9.73 0.00 40.12 2.41
1331 1356 8.070171 CACTTGCGCTTGCTTAGTTATAATAAT 58.930 33.333 9.73 0.00 40.12 1.28
1433 1464 3.381949 GACATCCATACTACTTGGTCGC 58.618 50.000 0.00 0.00 35.64 5.19
1810 2090 0.912006 GAACCTCCCCAAGAGCCTCT 60.912 60.000 0.00 0.00 41.74 3.69
2284 2564 9.231297 AGCACTGTTACACATGAGTTAATTATT 57.769 29.630 0.00 0.00 0.00 1.40
2327 2607 0.527113 CGCATGAGGATTGTTGCCAA 59.473 50.000 0.00 0.00 34.45 4.52
2379 2659 7.310664 CGATGGGAATGGAATGAAATGATTAG 58.689 38.462 0.00 0.00 0.00 1.73
2879 3160 6.743575 AGGCAGAGTTTGTGAATATAACAC 57.256 37.500 6.15 6.15 38.55 3.32
3018 3299 9.920946 ATAATGACAATGATAGTACCAAAAGGT 57.079 29.630 0.00 0.00 0.00 3.50
3186 3467 1.340248 GCCATTGCCATCTGAGGAATG 59.660 52.381 4.76 4.76 0.00 2.67
3559 3840 2.295349 CAGCATGCCATTTCCATCTACC 59.705 50.000 15.66 0.00 0.00 3.18
3688 3977 2.223572 CCACTCAAGTTCCAAACAGTGC 60.224 50.000 0.00 0.00 33.81 4.40
3694 3983 2.426738 CAAGTGCCACTCAAGTTCCAAA 59.573 45.455 0.00 0.00 0.00 3.28
3927 4216 4.380233 CCACAAAGGACAGATCTGCAAATC 60.380 45.833 22.83 12.16 41.22 2.17
3948 4237 1.668826 AAATACCAGTGGAGCCTCCA 58.331 50.000 18.40 10.05 45.98 3.86
4187 4476 0.836400 TTCTCTTGAGCTTCCCGGGT 60.836 55.000 22.86 0.00 0.00 5.28
4188 4477 0.107945 CTTCTCTTGAGCTTCCCGGG 60.108 60.000 16.85 16.85 0.00 5.73
4189 4478 0.742635 GCTTCTCTTGAGCTTCCCGG 60.743 60.000 0.00 0.00 0.00 5.73
4341 4634 9.366216 GATACAAGTGTAACATCATAGTGTTGA 57.634 33.333 2.76 0.00 42.02 3.18
4488 4781 1.182673 CACGCAATTTGCATACTCGC 58.817 50.000 20.56 0.00 45.36 5.03
4495 4790 2.669300 AATATGGCACGCAATTTGCA 57.331 40.000 20.56 1.59 45.36 4.08
4721 5018 7.511028 TCCACATTGGGTTTTATAATTATCCCC 59.489 37.037 14.45 13.33 38.32 4.81
4801 5099 1.454847 GTGGTGTGGGGCTTTGTGA 60.455 57.895 0.00 0.00 0.00 3.58
4819 5117 5.485209 ACTCAACCTAGGGTTTCAACTAG 57.515 43.478 14.81 0.00 44.33 2.57
4822 5120 4.715713 AGAACTCAACCTAGGGTTTCAAC 58.284 43.478 14.81 0.00 44.33 3.18
4866 5165 4.222366 ACTTACTTACTTAGCTCACCCCAC 59.778 45.833 0.00 0.00 0.00 4.61
4867 5166 4.422984 ACTTACTTACTTAGCTCACCCCA 58.577 43.478 0.00 0.00 0.00 4.96
4920 5219 8.567948 TGAGTTTGTCTTCTATCCAATTTGAAC 58.432 33.333 0.00 0.00 0.00 3.18
4961 5260 9.487790 TCCATTTTCTCATTTGGATTTTGTTAC 57.512 29.630 0.00 0.00 33.40 2.50
5021 5321 1.402968 CCTCCACATGCGAATGGAAAG 59.597 52.381 8.61 1.41 44.42 2.62
5031 5331 2.048603 GCAAGGACCCTCCACATGC 61.049 63.158 0.00 0.00 39.61 4.06
5035 5335 2.671682 GAGGCAAGGACCCTCCAC 59.328 66.667 0.00 0.00 42.46 4.02
5038 5338 1.301293 CAAGGAGGCAAGGACCCTC 59.699 63.158 0.00 0.00 46.54 4.30
5039 5339 2.234296 CCAAGGAGGCAAGGACCCT 61.234 63.158 0.00 0.00 34.77 4.34
5041 5341 1.303643 CACCAAGGAGGCAAGGACC 60.304 63.158 0.00 0.00 43.14 4.46
5042 5342 0.178990 AACACCAAGGAGGCAAGGAC 60.179 55.000 0.00 0.00 43.14 3.85
5043 5343 0.178992 CAACACCAAGGAGGCAAGGA 60.179 55.000 0.00 0.00 43.14 3.36
5044 5344 1.809567 GCAACACCAAGGAGGCAAGG 61.810 60.000 0.00 0.00 43.14 3.61
5045 5345 0.825010 AGCAACACCAAGGAGGCAAG 60.825 55.000 0.00 0.00 43.14 4.01
5046 5346 0.476338 TAGCAACACCAAGGAGGCAA 59.524 50.000 0.00 0.00 43.14 4.52
5047 5347 0.250727 GTAGCAACACCAAGGAGGCA 60.251 55.000 0.00 0.00 43.14 4.75
5048 5348 0.250727 TGTAGCAACACCAAGGAGGC 60.251 55.000 0.00 0.00 43.14 4.70
5062 5373 5.929992 TGAGTACAACCTTGTTATGTGTAGC 59.070 40.000 0.00 0.00 42.35 3.58
5067 5378 7.500892 TGTTTCATGAGTACAACCTTGTTATGT 59.499 33.333 9.53 0.00 42.35 2.29
5132 6867 6.560253 AATAGGTATTCCAAATAAGCTGCG 57.440 37.500 0.00 0.00 35.89 5.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.