Multiple sequence alignment - TraesCS7A01G295200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G295200 chr7A 100.000 2339 0 0 1 2339 383789562 383791900 0 4320
1 TraesCS7A01G295200 chr7A 88.837 1944 199 15 1 1943 357859093 357857167 0 2372
2 TraesCS7A01G295200 chr1A 89.452 1953 190 15 1 1946 310027437 310025494 0 2451
3 TraesCS7A01G295200 chr4A 89.506 1944 189 12 1 1943 143200199 143202128 0 2446
4 TraesCS7A01G295200 chr4A 88.639 1954 214 7 1 1948 304963422 304965373 0 2372
5 TraesCS7A01G295200 chr4A 88.142 1965 203 17 1 1943 285061474 285059518 0 2311
6 TraesCS7A01G295200 chr4A 87.430 1957 216 22 1 1943 313976641 313974701 0 2224
7 TraesCS7A01G295200 chr4A 87.274 1933 219 23 27 1946 338057401 338055483 0 2182
8 TraesCS7A01G295200 chr5A 89.178 1959 189 16 1 1943 316850404 316848453 0 2422
9 TraesCS7A01G295200 chr3A 88.606 1966 195 22 1 1950 353086044 353084092 0 2362
10 TraesCS7A01G295200 chr7B 97.722 395 8 1 1946 2339 216030649 216030255 0 678
11 TraesCS7A01G295200 chr7B 97.468 395 9 1 1946 2339 301868456 301868850 0 673
12 TraesCS7A01G295200 chrUn 97.468 395 9 1 1946 2339 123341630 123342024 0 673
13 TraesCS7A01G295200 chrUn 97.468 395 9 1 1946 2339 149120551 149120157 0 673
14 TraesCS7A01G295200 chr6A 97.468 395 9 1 1946 2339 291350189 291349795 0 673
15 TraesCS7A01G295200 chr1D 97.468 395 9 1 1946 2339 162285574 162285180 0 673
16 TraesCS7A01G295200 chr1B 97.468 395 9 1 1946 2339 240386815 240386421 0 673
17 TraesCS7A01G295200 chr1B 97.468 395 9 1 1946 2339 244118752 244118358 0 673
18 TraesCS7A01G295200 chr1B 97.468 395 9 1 1946 2339 251395963 251396357 0 673


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G295200 chr7A 383789562 383791900 2338 False 4320 4320 100.000 1 2339 1 chr7A.!!$F1 2338
1 TraesCS7A01G295200 chr7A 357857167 357859093 1926 True 2372 2372 88.837 1 1943 1 chr7A.!!$R1 1942
2 TraesCS7A01G295200 chr1A 310025494 310027437 1943 True 2451 2451 89.452 1 1946 1 chr1A.!!$R1 1945
3 TraesCS7A01G295200 chr4A 143200199 143202128 1929 False 2446 2446 89.506 1 1943 1 chr4A.!!$F1 1942
4 TraesCS7A01G295200 chr4A 304963422 304965373 1951 False 2372 2372 88.639 1 1948 1 chr4A.!!$F2 1947
5 TraesCS7A01G295200 chr4A 285059518 285061474 1956 True 2311 2311 88.142 1 1943 1 chr4A.!!$R1 1942
6 TraesCS7A01G295200 chr4A 313974701 313976641 1940 True 2224 2224 87.430 1 1943 1 chr4A.!!$R2 1942
7 TraesCS7A01G295200 chr4A 338055483 338057401 1918 True 2182 2182 87.274 27 1946 1 chr4A.!!$R3 1919
8 TraesCS7A01G295200 chr5A 316848453 316850404 1951 True 2422 2422 89.178 1 1943 1 chr5A.!!$R1 1942
9 TraesCS7A01G295200 chr3A 353084092 353086044 1952 True 2362 2362 88.606 1 1950 1 chr3A.!!$R1 1949

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
788 790 0.890683 GGACCATTCAAGGTGCTTGG 59.109 55.0 0.0 0.0 45.51 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2074 2115 0.038744 CTTGTCACCCCCAAGCTGAT 59.961 55.0 0.0 0.0 33.55 2.9 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 5.464588 TTCCATATCAACCATGGGAAGAA 57.535 39.130 18.09 4.58 42.79 2.52
63 64 4.836736 CCATGGGAAGAAATTAGCATGGAT 59.163 41.667 2.85 0.00 40.35 3.41
66 67 6.469782 TGGGAAGAAATTAGCATGGATTTC 57.530 37.500 0.00 0.00 40.73 2.17
123 124 5.236478 GGATTCGATATTTGTCGTTGTGGAT 59.764 40.000 0.00 0.00 42.07 3.41
185 186 6.354938 AGATAGATGATGCTTCACATGTTGT 58.645 36.000 4.14 0.00 39.84 3.32
342 344 2.210116 GCGTATCATCCACAAACCGAT 58.790 47.619 0.00 0.00 0.00 4.18
433 435 1.187087 GTGGGAGGAGTGTCTACCTG 58.813 60.000 0.00 0.00 38.59 4.00
467 469 2.230508 CCTACAACCGAGCAAGACACTA 59.769 50.000 0.00 0.00 0.00 2.74
477 479 2.158871 AGCAAGACACTAAACAACCGGA 60.159 45.455 9.46 0.00 0.00 5.14
565 567 2.161855 TCCAAGAGCGCATCAATTTGT 58.838 42.857 11.47 0.00 0.00 2.83
620 622 6.835174 AGGTGCATGAAGATACAAGACATAT 58.165 36.000 0.00 0.00 0.00 1.78
691 693 3.197549 GCACCCCATGGTATTCAACATTT 59.802 43.478 11.73 0.00 45.57 2.32
696 698 5.410067 CCCATGGTATTCAACATTTGTGAC 58.590 41.667 11.73 0.00 0.00 3.67
774 776 3.770040 CCACGAGCGGATGGACCA 61.770 66.667 0.00 0.00 38.34 4.02
788 790 0.890683 GGACCATTCAAGGTGCTTGG 59.109 55.000 0.00 0.00 45.51 3.61
981 983 1.763968 TGGACCTACCATCGTCTCAG 58.236 55.000 0.00 0.00 44.64 3.35
1004 1006 1.992834 TGCCTAGCGGACCCATGAA 60.993 57.895 0.00 0.00 0.00 2.57
1089 1091 1.938577 GCACATGAGACATGGCTACTG 59.061 52.381 0.00 4.45 0.00 2.74
1112 1114 2.741517 CTCATACGGACACATTGTGCAA 59.258 45.455 16.62 0.00 38.73 4.08
1116 1118 2.566913 ACGGACACATTGTGCAAACTA 58.433 42.857 16.62 0.00 38.73 2.24
1137 1139 5.905913 ACTAAGGTACCATGGAGAAGCTAAT 59.094 40.000 21.47 6.90 0.00 1.73
1138 1140 7.073854 ACTAAGGTACCATGGAGAAGCTAATA 58.926 38.462 21.47 7.63 0.00 0.98
1206 1220 6.165577 AGAAGAAGTGATGAAGAAGAAGCTC 58.834 40.000 0.00 0.00 0.00 4.09
1336 1351 1.903877 CTGGAGCCCAACGGATGACT 61.904 60.000 0.00 0.00 30.80 3.41
1374 1392 1.676968 CCAACCGGACATCTGACCA 59.323 57.895 9.46 0.00 0.00 4.02
1390 1408 2.594303 CAAAGCACACCCGAGCCA 60.594 61.111 0.00 0.00 0.00 4.75
1513 1531 2.275418 CACAGCCCATGTACCCCC 59.725 66.667 0.00 0.00 41.41 5.40
1532 1556 2.365941 CCCTTTTTCGCCCCTTTTACAA 59.634 45.455 0.00 0.00 0.00 2.41
1539 1563 4.289238 TCGCCCCTTTTACAATAAGACA 57.711 40.909 0.00 0.00 0.00 3.41
1556 1580 8.487028 CAATAAGACAATATATAGACCTCCCCC 58.513 40.741 0.00 0.00 0.00 5.40
1623 1648 2.283145 AGCTTTGCTCATCCACTTGT 57.717 45.000 0.00 0.00 30.62 3.16
1636 1661 3.314693 TCCACTTGTACACCTTCTCCTT 58.685 45.455 0.00 0.00 0.00 3.36
1657 1682 0.456221 GAGATTCGAGCCTCCAACGA 59.544 55.000 0.00 0.00 0.00 3.85
1717 1745 3.252554 AGAACTCAAGACCTCCTCACT 57.747 47.619 0.00 0.00 0.00 3.41
1744 1772 0.462789 CCGGCTACCCTTGTATCGTT 59.537 55.000 0.00 0.00 0.00 3.85
1795 1824 6.683312 TCCTTATGTACTCGAGGATCTAGA 57.317 41.667 18.41 0.00 33.51 2.43
1796 1825 6.703319 TCCTTATGTACTCGAGGATCTAGAG 58.297 44.000 18.41 6.18 38.78 2.43
1836 1865 5.524646 CGTGTTGGTTTAGTGTTTCCTCTTA 59.475 40.000 0.00 0.00 0.00 2.10
1872 1912 0.178915 TTCCCTCGTTTCCCTCCTCA 60.179 55.000 0.00 0.00 0.00 3.86
1875 1915 0.462759 CCTCGTTTCCCTCCTCATGC 60.463 60.000 0.00 0.00 0.00 4.06
1992 2033 6.534475 AGAAAATTCAATATGAGGCAAGCA 57.466 33.333 0.00 0.00 0.00 3.91
1993 2034 7.120923 AGAAAATTCAATATGAGGCAAGCAT 57.879 32.000 0.00 0.00 0.00 3.79
1994 2035 7.562135 AGAAAATTCAATATGAGGCAAGCATT 58.438 30.769 0.00 0.00 0.00 3.56
1995 2036 7.709613 AGAAAATTCAATATGAGGCAAGCATTC 59.290 33.333 0.00 0.00 0.00 2.67
1996 2037 6.726490 AATTCAATATGAGGCAAGCATTCT 57.274 33.333 0.00 0.00 0.00 2.40
1997 2038 6.726490 ATTCAATATGAGGCAAGCATTCTT 57.274 33.333 0.00 0.00 0.00 2.52
1998 2039 5.762825 TCAATATGAGGCAAGCATTCTTC 57.237 39.130 0.00 0.00 0.00 2.87
1999 2040 4.581824 TCAATATGAGGCAAGCATTCTTCC 59.418 41.667 0.00 0.00 0.00 3.46
2000 2041 1.772836 ATGAGGCAAGCATTCTTCCC 58.227 50.000 0.00 0.00 29.89 3.97
2001 2042 0.405198 TGAGGCAAGCATTCTTCCCA 59.595 50.000 0.00 0.00 32.34 4.37
2002 2043 0.813821 GAGGCAAGCATTCTTCCCAC 59.186 55.000 0.00 0.00 32.34 4.61
2003 2044 0.112995 AGGCAAGCATTCTTCCCACA 59.887 50.000 0.00 0.00 32.34 4.17
2004 2045 1.188863 GGCAAGCATTCTTCCCACAT 58.811 50.000 0.00 0.00 30.24 3.21
2005 2046 1.551883 GGCAAGCATTCTTCCCACATT 59.448 47.619 0.00 0.00 30.24 2.71
2006 2047 2.027837 GGCAAGCATTCTTCCCACATTT 60.028 45.455 0.00 0.00 30.24 2.32
2007 2048 3.557686 GGCAAGCATTCTTCCCACATTTT 60.558 43.478 0.00 0.00 30.24 1.82
2008 2049 3.681417 GCAAGCATTCTTCCCACATTTTC 59.319 43.478 0.00 0.00 0.00 2.29
2009 2050 4.562143 GCAAGCATTCTTCCCACATTTTCT 60.562 41.667 0.00 0.00 0.00 2.52
2010 2051 5.544650 CAAGCATTCTTCCCACATTTTCTT 58.455 37.500 0.00 0.00 0.00 2.52
2011 2052 6.690530 CAAGCATTCTTCCCACATTTTCTTA 58.309 36.000 0.00 0.00 0.00 2.10
2012 2053 7.325694 CAAGCATTCTTCCCACATTTTCTTAT 58.674 34.615 0.00 0.00 0.00 1.73
2013 2054 7.486407 AGCATTCTTCCCACATTTTCTTATT 57.514 32.000 0.00 0.00 0.00 1.40
2014 2055 8.593945 AGCATTCTTCCCACATTTTCTTATTA 57.406 30.769 0.00 0.00 0.00 0.98
2015 2056 9.205513 AGCATTCTTCCCACATTTTCTTATTAT 57.794 29.630 0.00 0.00 0.00 1.28
2016 2057 9.822185 GCATTCTTCCCACATTTTCTTATTATT 57.178 29.630 0.00 0.00 0.00 1.40
2036 2077 7.589958 TTATTCTTCAAAACAACCCTAAGCA 57.410 32.000 0.00 0.00 0.00 3.91
2037 2078 6.670695 ATTCTTCAAAACAACCCTAAGCAT 57.329 33.333 0.00 0.00 0.00 3.79
2038 2079 7.775053 ATTCTTCAAAACAACCCTAAGCATA 57.225 32.000 0.00 0.00 0.00 3.14
2039 2080 6.817765 TCTTCAAAACAACCCTAAGCATAG 57.182 37.500 0.00 0.00 0.00 2.23
2040 2081 6.303839 TCTTCAAAACAACCCTAAGCATAGT 58.696 36.000 0.00 0.00 0.00 2.12
2041 2082 7.455058 TCTTCAAAACAACCCTAAGCATAGTA 58.545 34.615 0.00 0.00 0.00 1.82
2042 2083 7.606456 TCTTCAAAACAACCCTAAGCATAGTAG 59.394 37.037 0.00 0.00 0.00 2.57
2043 2084 7.011499 TCAAAACAACCCTAAGCATAGTAGA 57.989 36.000 0.00 0.00 0.00 2.59
2044 2085 6.877322 TCAAAACAACCCTAAGCATAGTAGAC 59.123 38.462 0.00 0.00 0.00 2.59
2045 2086 6.368779 AAACAACCCTAAGCATAGTAGACA 57.631 37.500 0.00 0.00 0.00 3.41
2046 2087 6.368779 AACAACCCTAAGCATAGTAGACAA 57.631 37.500 0.00 0.00 0.00 3.18
2047 2088 6.561519 ACAACCCTAAGCATAGTAGACAAT 57.438 37.500 0.00 0.00 0.00 2.71
2048 2089 6.349300 ACAACCCTAAGCATAGTAGACAATG 58.651 40.000 0.00 0.00 0.00 2.82
2049 2090 6.070194 ACAACCCTAAGCATAGTAGACAATGT 60.070 38.462 0.00 0.00 0.00 2.71
2050 2091 6.561519 ACCCTAAGCATAGTAGACAATGTT 57.438 37.500 0.00 0.00 0.00 2.71
2051 2092 6.583562 ACCCTAAGCATAGTAGACAATGTTC 58.416 40.000 0.00 0.00 0.00 3.18
2052 2093 6.384305 ACCCTAAGCATAGTAGACAATGTTCT 59.616 38.462 0.00 0.00 0.00 3.01
2053 2094 7.563924 ACCCTAAGCATAGTAGACAATGTTCTA 59.436 37.037 0.00 0.00 0.00 2.10
2054 2095 8.589338 CCCTAAGCATAGTAGACAATGTTCTAT 58.411 37.037 0.00 0.00 30.73 1.98
2055 2096 9.988815 CCTAAGCATAGTAGACAATGTTCTATT 57.011 33.333 0.00 0.00 30.73 1.73
2058 2099 8.879342 AGCATAGTAGACAATGTTCTATTGAC 57.121 34.615 6.63 1.01 30.73 3.18
2059 2100 8.700051 AGCATAGTAGACAATGTTCTATTGACT 58.300 33.333 6.63 7.94 37.64 3.41
2060 2101 9.967346 GCATAGTAGACAATGTTCTATTGACTA 57.033 33.333 6.63 7.07 36.03 2.59
2065 2106 9.856488 GTAGACAATGTTCTATTGACTACTTCA 57.144 33.333 22.66 2.96 45.10 3.02
2066 2107 8.994429 AGACAATGTTCTATTGACTACTTCAG 57.006 34.615 6.63 0.00 34.94 3.02
2067 2108 8.589338 AGACAATGTTCTATTGACTACTTCAGT 58.411 33.333 6.63 0.00 41.47 3.41
2068 2109 9.209175 GACAATGTTCTATTGACTACTTCAGTT 57.791 33.333 6.63 0.00 37.72 3.16
2069 2110 9.561069 ACAATGTTCTATTGACTACTTCAGTTT 57.439 29.630 6.63 0.00 37.72 2.66
2070 2111 9.817365 CAATGTTCTATTGACTACTTCAGTTTG 57.183 33.333 0.00 0.00 37.72 2.93
2071 2112 9.561069 AATGTTCTATTGACTACTTCAGTTTGT 57.439 29.630 0.00 0.00 37.72 2.83
2072 2113 8.589335 TGTTCTATTGACTACTTCAGTTTGTC 57.411 34.615 6.08 6.08 37.72 3.18
2073 2114 7.656137 TGTTCTATTGACTACTTCAGTTTGTCC 59.344 37.037 9.08 0.00 37.72 4.02
2074 2115 7.297936 TCTATTGACTACTTCAGTTTGTCCA 57.702 36.000 9.08 1.79 37.72 4.02
2075 2116 7.907389 TCTATTGACTACTTCAGTTTGTCCAT 58.093 34.615 9.08 7.15 37.72 3.41
2076 2117 8.035394 TCTATTGACTACTTCAGTTTGTCCATC 58.965 37.037 9.08 0.00 37.72 3.51
2077 2118 5.545063 TGACTACTTCAGTTTGTCCATCA 57.455 39.130 9.08 0.00 37.72 3.07
2078 2119 5.541845 TGACTACTTCAGTTTGTCCATCAG 58.458 41.667 9.08 0.00 37.72 2.90
2079 2120 4.319177 ACTACTTCAGTTTGTCCATCAGC 58.681 43.478 0.00 0.00 31.59 4.26
2080 2121 3.498774 ACTTCAGTTTGTCCATCAGCT 57.501 42.857 0.00 0.00 0.00 4.24
2081 2122 3.825328 ACTTCAGTTTGTCCATCAGCTT 58.175 40.909 0.00 0.00 0.00 3.74
2082 2123 3.567164 ACTTCAGTTTGTCCATCAGCTTG 59.433 43.478 0.00 0.00 0.00 4.01
2083 2124 2.507484 TCAGTTTGTCCATCAGCTTGG 58.493 47.619 0.00 0.00 38.18 3.61
2084 2125 1.542915 CAGTTTGTCCATCAGCTTGGG 59.457 52.381 4.59 0.00 37.37 4.12
2085 2126 0.890683 GTTTGTCCATCAGCTTGGGG 59.109 55.000 4.59 0.00 37.37 4.96
2086 2127 0.251742 TTTGTCCATCAGCTTGGGGG 60.252 55.000 4.59 0.00 37.37 5.40
2087 2128 1.434513 TTGTCCATCAGCTTGGGGGT 61.435 55.000 4.59 0.00 37.37 4.95
2088 2129 1.379044 GTCCATCAGCTTGGGGGTG 60.379 63.158 4.59 0.00 44.04 4.61
2092 2133 3.667476 TCAGCTTGGGGGTGACAA 58.333 55.556 0.00 0.00 45.96 3.18
2093 2134 1.455849 TCAGCTTGGGGGTGACAAG 59.544 57.895 0.00 0.00 45.96 3.16
2094 2135 1.151450 CAGCTTGGGGGTGACAAGT 59.849 57.895 6.98 0.00 45.38 3.16
2095 2136 0.400213 CAGCTTGGGGGTGACAAGTA 59.600 55.000 6.98 0.00 45.38 2.24
2096 2137 0.693049 AGCTTGGGGGTGACAAGTAG 59.307 55.000 6.98 0.00 45.38 2.57
2097 2138 0.400594 GCTTGGGGGTGACAAGTAGT 59.599 55.000 6.98 0.00 45.38 2.73
2098 2139 1.626825 GCTTGGGGGTGACAAGTAGTA 59.373 52.381 6.98 0.00 45.38 1.82
2099 2140 2.614734 GCTTGGGGGTGACAAGTAGTAC 60.615 54.545 6.98 0.00 45.38 2.73
2100 2141 2.708037 TGGGGGTGACAAGTAGTACT 57.292 50.000 0.00 0.00 0.00 2.73
2101 2142 3.831642 TGGGGGTGACAAGTAGTACTA 57.168 47.619 2.50 0.00 0.00 1.82
2102 2143 4.130719 TGGGGGTGACAAGTAGTACTAA 57.869 45.455 3.61 0.00 0.00 2.24
2103 2144 4.491675 TGGGGGTGACAAGTAGTACTAAA 58.508 43.478 3.61 0.00 0.00 1.85
2104 2145 4.906664 TGGGGGTGACAAGTAGTACTAAAA 59.093 41.667 3.61 0.00 0.00 1.52
2105 2146 5.369110 TGGGGGTGACAAGTAGTACTAAAAA 59.631 40.000 3.61 0.00 0.00 1.94
2106 2147 5.936372 GGGGGTGACAAGTAGTACTAAAAAG 59.064 44.000 3.61 0.00 0.00 2.27
2107 2148 6.464892 GGGGGTGACAAGTAGTACTAAAAAGT 60.465 42.308 3.61 1.38 0.00 2.66
2108 2149 7.256296 GGGGGTGACAAGTAGTACTAAAAAGTA 60.256 40.741 3.61 0.00 0.00 2.24
2109 2150 7.816513 GGGGTGACAAGTAGTACTAAAAAGTAG 59.183 40.741 3.61 0.00 0.00 2.57
2110 2151 8.363390 GGGTGACAAGTAGTACTAAAAAGTAGT 58.637 37.037 3.61 0.00 0.00 2.73
2111 2152 9.755804 GGTGACAAGTAGTACTAAAAAGTAGTT 57.244 33.333 3.61 0.00 0.00 2.24
2119 2160 9.862371 GTAGTACTAAAAAGTAGTTTAGTCCCC 57.138 37.037 12.32 4.59 46.54 4.81
2120 2161 8.496534 AGTACTAAAAAGTAGTTTAGTCCCCA 57.503 34.615 12.32 0.00 46.54 4.96
2121 2162 8.937835 AGTACTAAAAAGTAGTTTAGTCCCCAA 58.062 33.333 12.32 0.00 46.54 4.12
2122 2163 8.993121 GTACTAAAAAGTAGTTTAGTCCCCAAC 58.007 37.037 12.32 3.70 46.54 3.77
2123 2164 7.809238 ACTAAAAAGTAGTTTAGTCCCCAACT 58.191 34.615 4.84 0.00 46.54 3.16
2124 2165 8.277197 ACTAAAAAGTAGTTTAGTCCCCAACTT 58.723 33.333 4.84 0.00 46.54 2.66
2125 2166 9.783081 CTAAAAAGTAGTTTAGTCCCCAACTTA 57.217 33.333 0.00 0.00 39.55 2.24
2126 2167 8.687292 AAAAAGTAGTTTAGTCCCCAACTTAG 57.313 34.615 0.00 0.00 39.55 2.18
2127 2168 5.417754 AGTAGTTTAGTCCCCAACTTAGC 57.582 43.478 0.00 0.00 39.55 3.09
2128 2169 3.715638 AGTTTAGTCCCCAACTTAGCC 57.284 47.619 0.00 0.00 39.55 3.93
2129 2170 2.307980 AGTTTAGTCCCCAACTTAGCCC 59.692 50.000 0.00 0.00 39.55 5.19
2130 2171 2.040679 GTTTAGTCCCCAACTTAGCCCA 59.959 50.000 0.00 0.00 39.55 5.36
2131 2172 2.280308 TAGTCCCCAACTTAGCCCAT 57.720 50.000 0.00 0.00 39.55 4.00
2132 2173 2.280308 AGTCCCCAACTTAGCCCATA 57.720 50.000 0.00 0.00 33.03 2.74
2133 2174 2.568979 AGTCCCCAACTTAGCCCATAA 58.431 47.619 0.00 0.00 33.03 1.90
2134 2175 2.923629 AGTCCCCAACTTAGCCCATAAA 59.076 45.455 0.00 0.00 33.03 1.40
2135 2176 3.021695 GTCCCCAACTTAGCCCATAAAC 58.978 50.000 0.00 0.00 0.00 2.01
2136 2177 2.650322 TCCCCAACTTAGCCCATAAACA 59.350 45.455 0.00 0.00 0.00 2.83
2137 2178 3.270960 TCCCCAACTTAGCCCATAAACAT 59.729 43.478 0.00 0.00 0.00 2.71
2138 2179 3.636764 CCCCAACTTAGCCCATAAACATC 59.363 47.826 0.00 0.00 0.00 3.06
2139 2180 4.536765 CCCAACTTAGCCCATAAACATCT 58.463 43.478 0.00 0.00 0.00 2.90
2140 2181 4.580580 CCCAACTTAGCCCATAAACATCTC 59.419 45.833 0.00 0.00 0.00 2.75
2141 2182 4.580580 CCAACTTAGCCCATAAACATCTCC 59.419 45.833 0.00 0.00 0.00 3.71
2142 2183 5.192927 CAACTTAGCCCATAAACATCTCCA 58.807 41.667 0.00 0.00 0.00 3.86
2143 2184 5.450818 ACTTAGCCCATAAACATCTCCAA 57.549 39.130 0.00 0.00 0.00 3.53
2144 2185 5.826643 ACTTAGCCCATAAACATCTCCAAA 58.173 37.500 0.00 0.00 0.00 3.28
2145 2186 6.252995 ACTTAGCCCATAAACATCTCCAAAA 58.747 36.000 0.00 0.00 0.00 2.44
2146 2187 6.378280 ACTTAGCCCATAAACATCTCCAAAAG 59.622 38.462 0.00 0.00 0.00 2.27
2147 2188 4.677182 AGCCCATAAACATCTCCAAAAGT 58.323 39.130 0.00 0.00 0.00 2.66
2148 2189 4.463891 AGCCCATAAACATCTCCAAAAGTG 59.536 41.667 0.00 0.00 0.00 3.16
2150 2191 4.381932 CCCATAAACATCTCCAAAAGTGGC 60.382 45.833 0.00 0.00 45.54 5.01
2151 2192 4.463891 CCATAAACATCTCCAAAAGTGGCT 59.536 41.667 0.00 0.00 45.54 4.75
2152 2193 5.652014 CCATAAACATCTCCAAAAGTGGCTA 59.348 40.000 0.00 0.00 45.54 3.93
2153 2194 6.152661 CCATAAACATCTCCAAAAGTGGCTAA 59.847 38.462 0.00 0.00 45.54 3.09
2154 2195 7.309744 CCATAAACATCTCCAAAAGTGGCTAAA 60.310 37.037 0.00 0.00 45.54 1.85
2155 2196 6.478512 AAACATCTCCAAAAGTGGCTAAAA 57.521 33.333 0.00 0.00 45.54 1.52
2156 2197 6.478512 AACATCTCCAAAAGTGGCTAAAAA 57.521 33.333 0.00 0.00 45.54 1.94
2157 2198 6.670695 ACATCTCCAAAAGTGGCTAAAAAT 57.329 33.333 0.00 0.00 45.54 1.82
2158 2199 7.066307 ACATCTCCAAAAGTGGCTAAAAATT 57.934 32.000 0.00 0.00 45.54 1.82
2159 2200 7.508687 ACATCTCCAAAAGTGGCTAAAAATTT 58.491 30.769 0.00 0.00 45.54 1.82
2160 2201 8.646900 ACATCTCCAAAAGTGGCTAAAAATTTA 58.353 29.630 0.00 0.00 45.54 1.40
2161 2202 9.143631 CATCTCCAAAAGTGGCTAAAAATTTAG 57.856 33.333 8.27 8.27 45.54 1.85
2162 2203 8.245195 TCTCCAAAAGTGGCTAAAAATTTAGT 57.755 30.769 12.99 0.00 45.54 2.24
2163 2204 9.357161 TCTCCAAAAGTGGCTAAAAATTTAGTA 57.643 29.630 12.99 2.57 45.54 1.82
2166 2207 9.921637 CCAAAAGTGGCTAAAAATTTAGTATCA 57.078 29.630 12.99 7.73 41.63 2.15
2168 2209 9.620660 AAAAGTGGCTAAAAATTTAGTATCACG 57.379 29.630 12.99 0.00 41.63 4.35
2169 2210 8.556213 AAGTGGCTAAAAATTTAGTATCACGA 57.444 30.769 12.99 0.00 41.63 4.35
2170 2211 8.732746 AGTGGCTAAAAATTTAGTATCACGAT 57.267 30.769 12.99 4.57 41.63 3.73
2171 2212 8.827677 AGTGGCTAAAAATTTAGTATCACGATC 58.172 33.333 12.99 0.00 41.63 3.69
2172 2213 8.827677 GTGGCTAAAAATTTAGTATCACGATCT 58.172 33.333 12.99 0.00 41.63 2.75
2173 2214 8.826710 TGGCTAAAAATTTAGTATCACGATCTG 58.173 33.333 12.99 0.00 41.63 2.90
2174 2215 9.042008 GGCTAAAAATTTAGTATCACGATCTGA 57.958 33.333 12.99 0.00 41.63 3.27
2189 2230 8.196802 TCACGATCTGAAACAATAGTATTTGG 57.803 34.615 0.00 0.00 0.00 3.28
2190 2231 6.907212 CACGATCTGAAACAATAGTATTTGGC 59.093 38.462 0.00 0.00 0.00 4.52
2191 2232 6.597672 ACGATCTGAAACAATAGTATTTGGCA 59.402 34.615 0.00 0.00 0.00 4.92
2192 2233 6.907212 CGATCTGAAACAATAGTATTTGGCAC 59.093 38.462 0.00 0.00 0.00 5.01
2193 2234 7.413988 CGATCTGAAACAATAGTATTTGGCACA 60.414 37.037 0.00 0.00 0.00 4.57
2194 2235 6.908825 TCTGAAACAATAGTATTTGGCACAC 58.091 36.000 0.00 0.00 39.29 3.82
2195 2236 6.019779 TGAAACAATAGTATTTGGCACACC 57.980 37.500 0.00 0.00 39.29 4.16
2209 2250 2.917701 CACACCATGCAAGCGAATAA 57.082 45.000 0.00 0.00 0.00 1.40
2210 2251 3.425577 CACACCATGCAAGCGAATAAT 57.574 42.857 0.00 0.00 0.00 1.28
2211 2252 3.772932 CACACCATGCAAGCGAATAATT 58.227 40.909 0.00 0.00 0.00 1.40
2212 2253 4.175516 CACACCATGCAAGCGAATAATTT 58.824 39.130 0.00 0.00 0.00 1.82
2213 2254 4.266029 CACACCATGCAAGCGAATAATTTC 59.734 41.667 0.00 0.00 0.00 2.17
2214 2255 4.082300 ACACCATGCAAGCGAATAATTTCA 60.082 37.500 0.00 0.00 0.00 2.69
2215 2256 4.266029 CACCATGCAAGCGAATAATTTCAC 59.734 41.667 0.00 0.00 0.00 3.18
2216 2257 3.483196 CCATGCAAGCGAATAATTTCACG 59.517 43.478 0.00 0.00 0.00 4.35
2217 2258 4.341935 CATGCAAGCGAATAATTTCACGA 58.658 39.130 0.00 0.00 0.00 4.35
2218 2259 3.742786 TGCAAGCGAATAATTTCACGAC 58.257 40.909 0.00 0.00 0.00 4.34
2219 2260 3.187432 TGCAAGCGAATAATTTCACGACA 59.813 39.130 0.00 0.00 0.00 4.35
2220 2261 3.780801 GCAAGCGAATAATTTCACGACAG 59.219 43.478 0.00 0.00 0.00 3.51
2221 2262 4.435518 GCAAGCGAATAATTTCACGACAGA 60.436 41.667 0.00 0.00 0.00 3.41
2222 2263 5.617609 CAAGCGAATAATTTCACGACAGAA 58.382 37.500 0.00 0.00 0.00 3.02
2223 2264 5.204673 AGCGAATAATTTCACGACAGAAC 57.795 39.130 0.00 0.00 0.00 3.01
2224 2265 4.688879 AGCGAATAATTTCACGACAGAACA 59.311 37.500 0.00 0.00 0.00 3.18
2225 2266 5.178623 AGCGAATAATTTCACGACAGAACAA 59.821 36.000 0.00 0.00 0.00 2.83
2226 2267 5.849081 GCGAATAATTTCACGACAGAACAAA 59.151 36.000 0.00 0.00 0.00 2.83
2227 2268 6.523201 GCGAATAATTTCACGACAGAACAAAT 59.477 34.615 0.00 0.00 0.00 2.32
2228 2269 7.252995 GCGAATAATTTCACGACAGAACAAATC 60.253 37.037 0.00 0.00 0.00 2.17
2229 2270 7.744276 CGAATAATTTCACGACAGAACAAATCA 59.256 33.333 0.00 0.00 0.00 2.57
2230 2271 8.955061 AATAATTTCACGACAGAACAAATCAG 57.045 30.769 0.00 0.00 0.00 2.90
2231 2272 3.878086 TTCACGACAGAACAAATCAGC 57.122 42.857 0.00 0.00 0.00 4.26
2232 2273 2.832563 TCACGACAGAACAAATCAGCA 58.167 42.857 0.00 0.00 0.00 4.41
2233 2274 3.202097 TCACGACAGAACAAATCAGCAA 58.798 40.909 0.00 0.00 0.00 3.91
2234 2275 3.002246 TCACGACAGAACAAATCAGCAAC 59.998 43.478 0.00 0.00 0.00 4.17
2235 2276 2.942376 ACGACAGAACAAATCAGCAACA 59.058 40.909 0.00 0.00 0.00 3.33
2236 2277 3.565482 ACGACAGAACAAATCAGCAACAT 59.435 39.130 0.00 0.00 0.00 2.71
2237 2278 4.036734 ACGACAGAACAAATCAGCAACATT 59.963 37.500 0.00 0.00 0.00 2.71
2238 2279 5.238432 ACGACAGAACAAATCAGCAACATTA 59.762 36.000 0.00 0.00 0.00 1.90
2239 2280 6.142139 CGACAGAACAAATCAGCAACATTAA 58.858 36.000 0.00 0.00 0.00 1.40
2240 2281 6.803320 CGACAGAACAAATCAGCAACATTAAT 59.197 34.615 0.00 0.00 0.00 1.40
2241 2282 7.962373 CGACAGAACAAATCAGCAACATTAATA 59.038 33.333 0.00 0.00 0.00 0.98
2242 2283 9.282247 GACAGAACAAATCAGCAACATTAATAG 57.718 33.333 0.00 0.00 0.00 1.73
2243 2284 7.756722 ACAGAACAAATCAGCAACATTAATAGC 59.243 33.333 0.00 0.00 0.00 2.97
2244 2285 7.756272 CAGAACAAATCAGCAACATTAATAGCA 59.244 33.333 8.75 0.00 0.00 3.49
2245 2286 8.472413 AGAACAAATCAGCAACATTAATAGCAT 58.528 29.630 8.75 0.00 0.00 3.79
2246 2287 8.638685 AACAAATCAGCAACATTAATAGCATC 57.361 30.769 8.75 0.00 0.00 3.91
2247 2288 7.774134 ACAAATCAGCAACATTAATAGCATCA 58.226 30.769 8.75 0.00 0.00 3.07
2248 2289 8.418662 ACAAATCAGCAACATTAATAGCATCAT 58.581 29.630 8.75 0.00 0.00 2.45
2249 2290 8.912658 CAAATCAGCAACATTAATAGCATCATC 58.087 33.333 8.75 0.00 0.00 2.92
2250 2291 6.232139 TCAGCAACATTAATAGCATCATCG 57.768 37.500 8.75 0.00 0.00 3.84
2251 2292 4.849926 CAGCAACATTAATAGCATCATCGC 59.150 41.667 8.75 0.00 0.00 4.58
2252 2293 4.758674 AGCAACATTAATAGCATCATCGCT 59.241 37.500 8.75 0.00 46.26 4.93
2253 2294 5.240183 AGCAACATTAATAGCATCATCGCTT 59.760 36.000 8.75 0.00 43.56 4.68
2254 2295 5.916883 GCAACATTAATAGCATCATCGCTTT 59.083 36.000 0.00 0.00 43.56 3.51
2255 2296 6.418819 GCAACATTAATAGCATCATCGCTTTT 59.581 34.615 0.00 0.00 43.56 2.27
2256 2297 7.591057 GCAACATTAATAGCATCATCGCTTTTA 59.409 33.333 0.00 0.00 43.56 1.52
2257 2298 9.616634 CAACATTAATAGCATCATCGCTTTTAT 57.383 29.630 0.00 0.00 43.56 1.40
2258 2299 9.616634 AACATTAATAGCATCATCGCTTTTATG 57.383 29.630 0.00 0.00 43.56 1.90
2259 2300 9.002600 ACATTAATAGCATCATCGCTTTTATGA 57.997 29.630 0.00 0.00 43.56 2.15
2260 2301 9.486857 CATTAATAGCATCATCGCTTTTATGAG 57.513 33.333 0.00 0.00 43.56 2.90
2261 2302 8.831715 TTAATAGCATCATCGCTTTTATGAGA 57.168 30.769 0.00 0.00 43.56 3.27
2262 2303 7.918536 AATAGCATCATCGCTTTTATGAGAT 57.081 32.000 0.00 0.00 43.56 2.75
2263 2304 5.608676 AGCATCATCGCTTTTATGAGATG 57.391 39.130 0.00 0.00 39.99 2.90
2264 2305 4.454847 AGCATCATCGCTTTTATGAGATGG 59.545 41.667 8.00 0.00 39.99 3.51
2265 2306 4.214971 GCATCATCGCTTTTATGAGATGGT 59.785 41.667 8.00 0.00 42.06 3.55
2266 2307 5.409520 GCATCATCGCTTTTATGAGATGGTA 59.590 40.000 8.00 0.00 42.06 3.25
2267 2308 6.093219 GCATCATCGCTTTTATGAGATGGTAT 59.907 38.462 8.00 0.00 42.06 2.73
2268 2309 7.278646 GCATCATCGCTTTTATGAGATGGTATA 59.721 37.037 8.00 0.00 42.06 1.47
2269 2310 9.154847 CATCATCGCTTTTATGAGATGGTATAA 57.845 33.333 8.00 0.00 42.06 0.98
2270 2311 9.725019 ATCATCGCTTTTATGAGATGGTATAAA 57.275 29.630 8.00 0.00 42.06 1.40
2271 2312 9.208022 TCATCGCTTTTATGAGATGGTATAAAG 57.792 33.333 8.00 0.00 42.06 1.85
2272 2313 8.993121 CATCGCTTTTATGAGATGGTATAAAGT 58.007 33.333 0.00 0.00 39.47 2.66
2273 2314 8.365399 TCGCTTTTATGAGATGGTATAAAGTG 57.635 34.615 0.00 0.00 32.27 3.16
2274 2315 7.985184 TCGCTTTTATGAGATGGTATAAAGTGT 59.015 33.333 0.00 0.00 32.27 3.55
2275 2316 8.064222 CGCTTTTATGAGATGGTATAAAGTGTG 58.936 37.037 0.00 0.00 32.27 3.82
2276 2317 7.857885 GCTTTTATGAGATGGTATAAAGTGTGC 59.142 37.037 0.00 0.00 32.27 4.57
2277 2318 7.801716 TTTATGAGATGGTATAAAGTGTGCC 57.198 36.000 0.00 0.00 0.00 5.01
2278 2319 4.835284 TGAGATGGTATAAAGTGTGCCA 57.165 40.909 0.00 0.00 0.00 4.92
2279 2320 5.372343 TGAGATGGTATAAAGTGTGCCAT 57.628 39.130 0.00 0.00 42.04 4.40
2280 2321 5.754782 TGAGATGGTATAAAGTGTGCCATT 58.245 37.500 0.00 0.00 39.74 3.16
2281 2322 6.186957 TGAGATGGTATAAAGTGTGCCATTT 58.813 36.000 0.00 0.00 39.74 2.32
2282 2323 6.663093 TGAGATGGTATAAAGTGTGCCATTTT 59.337 34.615 0.00 2.33 39.74 1.82
2283 2324 7.100458 AGATGGTATAAAGTGTGCCATTTTC 57.900 36.000 0.00 0.00 39.74 2.29
2284 2325 5.303747 TGGTATAAAGTGTGCCATTTTCG 57.696 39.130 0.25 0.00 0.00 3.46
2285 2326 5.004448 TGGTATAAAGTGTGCCATTTTCGA 58.996 37.500 0.25 0.00 0.00 3.71
2286 2327 5.123186 TGGTATAAAGTGTGCCATTTTCGAG 59.877 40.000 0.25 0.00 0.00 4.04
2287 2328 5.353123 GGTATAAAGTGTGCCATTTTCGAGA 59.647 40.000 0.25 0.00 0.00 4.04
2288 2329 5.957842 ATAAAGTGTGCCATTTTCGAGAA 57.042 34.783 0.00 0.00 0.00 2.87
2289 2330 4.853924 AAAGTGTGCCATTTTCGAGAAT 57.146 36.364 0.00 0.00 0.00 2.40
2290 2331 4.425577 AAGTGTGCCATTTTCGAGAATC 57.574 40.909 0.00 0.00 0.00 2.52
2291 2332 3.679389 AGTGTGCCATTTTCGAGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
2292 2333 4.832248 AGTGTGCCATTTTCGAGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
2293 2334 5.431765 AGTGTGCCATTTTCGAGAATCTAT 58.568 37.500 0.00 0.00 0.00 1.98
2294 2335 5.525378 AGTGTGCCATTTTCGAGAATCTATC 59.475 40.000 0.00 0.00 0.00 2.08
2295 2336 4.816385 TGTGCCATTTTCGAGAATCTATCC 59.184 41.667 0.00 0.00 0.00 2.59
2296 2337 4.816385 GTGCCATTTTCGAGAATCTATCCA 59.184 41.667 0.00 0.00 0.00 3.41
2297 2338 4.816385 TGCCATTTTCGAGAATCTATCCAC 59.184 41.667 0.00 0.00 0.00 4.02
2298 2339 4.084328 GCCATTTTCGAGAATCTATCCACG 60.084 45.833 0.00 0.00 0.00 4.94
2299 2340 5.289595 CCATTTTCGAGAATCTATCCACGA 58.710 41.667 0.00 0.00 36.22 4.35
2300 2341 5.175856 CCATTTTCGAGAATCTATCCACGAC 59.824 44.000 0.00 0.00 37.19 4.34
2301 2342 4.976224 TTTCGAGAATCTATCCACGACA 57.024 40.909 0.00 0.00 37.19 4.35
2302 2343 4.976224 TTCGAGAATCTATCCACGACAA 57.024 40.909 0.00 0.00 37.19 3.18
2303 2344 4.288670 TCGAGAATCTATCCACGACAAC 57.711 45.455 0.00 0.00 34.22 3.32
2304 2345 3.692593 TCGAGAATCTATCCACGACAACA 59.307 43.478 0.00 0.00 34.22 3.33
2305 2346 4.157105 TCGAGAATCTATCCACGACAACAA 59.843 41.667 0.00 0.00 34.22 2.83
2306 2347 4.862574 CGAGAATCTATCCACGACAACAAA 59.137 41.667 0.00 0.00 32.54 2.83
2307 2348 5.520288 CGAGAATCTATCCACGACAACAAAT 59.480 40.000 0.00 0.00 32.54 2.32
2308 2349 6.695713 CGAGAATCTATCCACGACAACAAATA 59.304 38.462 0.00 0.00 32.54 1.40
2309 2350 7.382488 CGAGAATCTATCCACGACAACAAATAT 59.618 37.037 0.00 0.00 32.54 1.28
2310 2351 8.370493 AGAATCTATCCACGACAACAAATATG 57.630 34.615 0.00 0.00 0.00 1.78
2311 2352 5.984233 TCTATCCACGACAACAAATATGC 57.016 39.130 0.00 0.00 0.00 3.14
2312 2353 4.814234 TCTATCCACGACAACAAATATGCC 59.186 41.667 0.00 0.00 0.00 4.40
2313 2354 2.784347 TCCACGACAACAAATATGCCA 58.216 42.857 0.00 0.00 0.00 4.92
2314 2355 3.351740 TCCACGACAACAAATATGCCAT 58.648 40.909 0.00 0.00 0.00 4.40
2315 2356 3.376859 TCCACGACAACAAATATGCCATC 59.623 43.478 0.00 0.00 0.00 3.51
2316 2357 3.489059 CCACGACAACAAATATGCCATCC 60.489 47.826 0.00 0.00 0.00 3.51
2317 2358 2.687935 ACGACAACAAATATGCCATCCC 59.312 45.455 0.00 0.00 0.00 3.85
2318 2359 2.951642 CGACAACAAATATGCCATCCCT 59.048 45.455 0.00 0.00 0.00 4.20
2319 2360 3.003689 CGACAACAAATATGCCATCCCTC 59.996 47.826 0.00 0.00 0.00 4.30
2320 2361 3.299503 ACAACAAATATGCCATCCCTCC 58.700 45.455 0.00 0.00 0.00 4.30
2321 2362 2.629617 CAACAAATATGCCATCCCTCCC 59.370 50.000 0.00 0.00 0.00 4.30
2322 2363 1.147817 ACAAATATGCCATCCCTCCCC 59.852 52.381 0.00 0.00 0.00 4.81
2323 2364 1.430464 CAAATATGCCATCCCTCCCCT 59.570 52.381 0.00 0.00 0.00 4.79
2324 2365 1.852301 AATATGCCATCCCTCCCCTT 58.148 50.000 0.00 0.00 0.00 3.95
2325 2366 1.376649 ATATGCCATCCCTCCCCTTC 58.623 55.000 0.00 0.00 0.00 3.46
2326 2367 0.271927 TATGCCATCCCTCCCCTTCT 59.728 55.000 0.00 0.00 0.00 2.85
2327 2368 0.628668 ATGCCATCCCTCCCCTTCTT 60.629 55.000 0.00 0.00 0.00 2.52
2328 2369 0.850883 TGCCATCCCTCCCCTTCTTT 60.851 55.000 0.00 0.00 0.00 2.52
2329 2370 0.396278 GCCATCCCTCCCCTTCTTTG 60.396 60.000 0.00 0.00 0.00 2.77
2330 2371 1.002857 CCATCCCTCCCCTTCTTTGT 58.997 55.000 0.00 0.00 0.00 2.83
2331 2372 1.359130 CCATCCCTCCCCTTCTTTGTT 59.641 52.381 0.00 0.00 0.00 2.83
2332 2373 2.621668 CCATCCCTCCCCTTCTTTGTTC 60.622 54.545 0.00 0.00 0.00 3.18
2333 2374 0.690762 TCCCTCCCCTTCTTTGTTCG 59.309 55.000 0.00 0.00 0.00 3.95
2334 2375 0.690762 CCCTCCCCTTCTTTGTTCGA 59.309 55.000 0.00 0.00 0.00 3.71
2335 2376 1.339151 CCCTCCCCTTCTTTGTTCGAG 60.339 57.143 0.00 0.00 0.00 4.04
2336 2377 1.339151 CCTCCCCTTCTTTGTTCGAGG 60.339 57.143 0.00 0.00 0.00 4.63
2337 2378 1.348036 CTCCCCTTCTTTGTTCGAGGT 59.652 52.381 0.00 0.00 0.00 3.85
2338 2379 2.565834 CTCCCCTTCTTTGTTCGAGGTA 59.434 50.000 0.00 0.00 0.00 3.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 6.119536 TCCAAGTACGAAATCCATGCTAATT 58.880 36.000 0.00 0.00 0.00 1.40
63 64 3.516300 TCCTAGGCAATCCAAGTACGAAA 59.484 43.478 2.96 0.00 33.74 3.46
66 67 2.431057 AGTCCTAGGCAATCCAAGTACG 59.569 50.000 2.96 0.00 33.74 3.67
123 124 2.942804 TGTGCCATCTTGGAGAAACAA 58.057 42.857 0.00 0.00 40.96 2.83
234 236 2.612672 GACGTCACGGTCTGAGATGATA 59.387 50.000 11.55 0.00 34.09 2.15
342 344 0.183014 TGGTAACTTCCGTTTGGCCA 59.817 50.000 0.00 0.00 34.59 5.36
365 367 1.813786 GAAGTAGAGCGGAGAGTGTGT 59.186 52.381 0.00 0.00 0.00 3.72
433 435 1.529865 GTTGTAGGCAAACTCGGTGAC 59.470 52.381 0.00 0.00 36.22 3.67
467 469 0.468585 GGGGGACTTTCCGGTTGTTT 60.469 55.000 0.00 0.00 37.43 2.83
477 479 1.542187 CGACCTCGAAGGGGGACTTT 61.542 60.000 5.98 0.00 40.58 2.66
565 567 1.227002 TCACACGTGCACTTGCGTA 60.227 52.632 22.06 6.05 45.83 4.42
620 622 2.413796 CGTTGTACTTGGCGCTTGATAA 59.586 45.455 7.64 0.00 0.00 1.75
691 693 1.110518 TGTAGCCACACGAGGTCACA 61.111 55.000 0.00 0.00 0.00 3.58
774 776 2.226962 AGCATCCAAGCACCTTGAAT 57.773 45.000 6.54 0.00 43.42 2.57
788 790 2.009774 AGGCATTGTCGTTGTAGCATC 58.990 47.619 0.00 0.00 0.00 3.91
917 919 0.348370 ATCATCTCCCCTCCCTTGGT 59.652 55.000 0.00 0.00 0.00 3.67
1004 1006 0.604780 AGCTCTTGCACATGCTCGTT 60.605 50.000 5.31 0.00 42.74 3.85
1089 1091 1.665679 CACAATGTGTCCGTATGAGGC 59.334 52.381 5.00 0.00 0.00 4.70
1112 1114 4.104831 AGCTTCTCCATGGTACCTTAGTT 58.895 43.478 14.36 0.00 0.00 2.24
1116 1118 6.689177 GCTTATTAGCTTCTCCATGGTACCTT 60.689 42.308 14.36 3.50 44.27 3.50
1137 1139 5.087323 TCCTCTTCTTCTTCTCCTTGCTTA 58.913 41.667 0.00 0.00 0.00 3.09
1138 1140 3.906846 TCCTCTTCTTCTTCTCCTTGCTT 59.093 43.478 0.00 0.00 0.00 3.91
1206 1220 2.494918 CGGTAGTTCGGAGCCTGG 59.505 66.667 0.00 0.00 0.00 4.45
1278 1293 4.595538 GTGTGGTGGCGTCGGTCA 62.596 66.667 0.00 0.00 0.00 4.02
1366 1384 0.606401 CGGGTGTGCTTTGGTCAGAT 60.606 55.000 0.00 0.00 0.00 2.90
1374 1392 1.454847 TTTGGCTCGGGTGTGCTTT 60.455 52.632 0.00 0.00 35.02 3.51
1471 1489 1.968017 CACATGGCAGCGAACAGGT 60.968 57.895 0.00 0.00 30.97 4.00
1513 1531 6.584942 GTCTTATTGTAAAAGGGGCGAAAAAG 59.415 38.462 0.00 0.00 0.00 2.27
1575 1599 8.461222 CACACAAAATATGAGCTAATCCTTTGA 58.539 33.333 18.43 0.00 0.00 2.69
1657 1682 0.914417 TCCGCTTGGGGGATCTTCTT 60.914 55.000 3.89 0.00 39.75 2.52
1717 1745 0.252103 AAGGGTAGCCGGTCTTCTCA 60.252 55.000 1.90 0.00 0.00 3.27
1744 1772 2.933495 CGATCCACGGACAACTAAGA 57.067 50.000 0.00 0.00 38.46 2.10
1795 1824 3.664107 ACACGAATAAGTCACACATGCT 58.336 40.909 0.00 0.00 0.00 3.79
1796 1825 4.151070 CAACACGAATAAGTCACACATGC 58.849 43.478 0.00 0.00 0.00 4.06
1836 1865 5.458595 GAGGGAAATCATAAGGGGAAACAT 58.541 41.667 0.00 0.00 0.00 2.71
1872 1912 1.002366 GCGATGAACACGAAGAGCAT 58.998 50.000 0.00 0.00 0.00 3.79
1875 1915 1.413767 CCCGCGATGAACACGAAGAG 61.414 60.000 8.23 0.00 0.00 2.85
1966 2007 8.698210 TGCTTGCCTCATATTGAATTTTCTTAT 58.302 29.630 0.00 0.00 0.00 1.73
1967 2008 8.065473 TGCTTGCCTCATATTGAATTTTCTTA 57.935 30.769 0.00 0.00 0.00 2.10
1968 2009 6.938507 TGCTTGCCTCATATTGAATTTTCTT 58.061 32.000 0.00 0.00 0.00 2.52
1969 2010 6.534475 TGCTTGCCTCATATTGAATTTTCT 57.466 33.333 0.00 0.00 0.00 2.52
1970 2011 7.709613 AGAATGCTTGCCTCATATTGAATTTTC 59.290 33.333 0.00 0.00 0.00 2.29
1971 2012 7.562135 AGAATGCTTGCCTCATATTGAATTTT 58.438 30.769 0.00 0.00 0.00 1.82
1972 2013 7.120923 AGAATGCTTGCCTCATATTGAATTT 57.879 32.000 0.00 0.00 0.00 1.82
1973 2014 6.726490 AGAATGCTTGCCTCATATTGAATT 57.274 33.333 0.00 0.00 0.00 2.17
1974 2015 6.239232 GGAAGAATGCTTGCCTCATATTGAAT 60.239 38.462 0.00 0.00 36.56 2.57
1975 2016 5.068198 GGAAGAATGCTTGCCTCATATTGAA 59.932 40.000 0.00 0.00 36.56 2.69
1976 2017 4.581824 GGAAGAATGCTTGCCTCATATTGA 59.418 41.667 0.00 0.00 36.56 2.57
1977 2018 4.868067 GGAAGAATGCTTGCCTCATATTG 58.132 43.478 0.00 0.00 36.56 1.90
1986 2027 3.323751 AAATGTGGGAAGAATGCTTGC 57.676 42.857 0.00 0.00 41.25 4.01
1987 2028 5.143376 AGAAAATGTGGGAAGAATGCTTG 57.857 39.130 0.00 0.00 33.61 4.01
1988 2029 5.813513 AAGAAAATGTGGGAAGAATGCTT 57.186 34.783 0.00 0.00 36.96 3.91
1989 2030 7.486407 AATAAGAAAATGTGGGAAGAATGCT 57.514 32.000 0.00 0.00 0.00 3.79
1990 2031 9.822185 AATAATAAGAAAATGTGGGAAGAATGC 57.178 29.630 0.00 0.00 0.00 3.56
2010 2051 9.303116 TGCTTAGGGTTGTTTTGAAGAATAATA 57.697 29.630 0.00 0.00 0.00 0.98
2011 2052 8.189119 TGCTTAGGGTTGTTTTGAAGAATAAT 57.811 30.769 0.00 0.00 0.00 1.28
2012 2053 7.589958 TGCTTAGGGTTGTTTTGAAGAATAA 57.410 32.000 0.00 0.00 0.00 1.40
2013 2054 7.775053 ATGCTTAGGGTTGTTTTGAAGAATA 57.225 32.000 0.00 0.00 0.00 1.75
2014 2055 6.670695 ATGCTTAGGGTTGTTTTGAAGAAT 57.329 33.333 0.00 0.00 0.00 2.40
2015 2056 6.775629 ACTATGCTTAGGGTTGTTTTGAAGAA 59.224 34.615 11.03 0.00 0.00 2.52
2016 2057 6.303839 ACTATGCTTAGGGTTGTTTTGAAGA 58.696 36.000 11.03 0.00 0.00 2.87
2017 2058 6.575162 ACTATGCTTAGGGTTGTTTTGAAG 57.425 37.500 11.03 0.00 0.00 3.02
2018 2059 7.389607 GTCTACTATGCTTAGGGTTGTTTTGAA 59.610 37.037 11.03 0.00 0.00 2.69
2019 2060 6.877322 GTCTACTATGCTTAGGGTTGTTTTGA 59.123 38.462 11.03 0.00 0.00 2.69
2020 2061 6.653320 TGTCTACTATGCTTAGGGTTGTTTTG 59.347 38.462 11.03 0.00 0.00 2.44
2021 2062 6.775708 TGTCTACTATGCTTAGGGTTGTTTT 58.224 36.000 11.03 0.00 0.00 2.43
2022 2063 6.368779 TGTCTACTATGCTTAGGGTTGTTT 57.631 37.500 11.03 0.00 0.00 2.83
2023 2064 6.368779 TTGTCTACTATGCTTAGGGTTGTT 57.631 37.500 11.03 0.00 0.00 2.83
2024 2065 6.070194 ACATTGTCTACTATGCTTAGGGTTGT 60.070 38.462 11.03 2.92 33.42 3.32
2025 2066 6.349300 ACATTGTCTACTATGCTTAGGGTTG 58.651 40.000 11.03 2.42 33.42 3.77
2026 2067 6.561519 ACATTGTCTACTATGCTTAGGGTT 57.438 37.500 11.03 0.00 33.42 4.11
2027 2068 6.384305 AGAACATTGTCTACTATGCTTAGGGT 59.616 38.462 11.03 0.00 33.42 4.34
2028 2069 6.821388 AGAACATTGTCTACTATGCTTAGGG 58.179 40.000 11.03 4.13 33.42 3.53
2029 2070 9.988815 AATAGAACATTGTCTACTATGCTTAGG 57.011 33.333 11.03 0.00 32.97 2.69
2032 2073 9.319143 GTCAATAGAACATTGTCTACTATGCTT 57.681 33.333 4.74 0.22 32.97 3.91
2033 2074 8.700051 AGTCAATAGAACATTGTCTACTATGCT 58.300 33.333 4.74 0.00 32.97 3.79
2034 2075 8.879342 AGTCAATAGAACATTGTCTACTATGC 57.121 34.615 4.74 0.00 32.97 3.14
2039 2080 9.856488 TGAAGTAGTCAATAGAACATTGTCTAC 57.144 33.333 18.43 18.43 43.87 2.59
2041 2082 8.589338 ACTGAAGTAGTCAATAGAACATTGTCT 58.411 33.333 0.00 3.07 33.17 3.41
2042 2083 8.764524 ACTGAAGTAGTCAATAGAACATTGTC 57.235 34.615 0.00 0.00 33.17 3.18
2043 2084 9.561069 AAACTGAAGTAGTCAATAGAACATTGT 57.439 29.630 0.00 0.00 39.18 2.71
2044 2085 9.817365 CAAACTGAAGTAGTCAATAGAACATTG 57.183 33.333 0.00 0.00 39.18 2.82
2045 2086 9.561069 ACAAACTGAAGTAGTCAATAGAACATT 57.439 29.630 0.00 0.00 39.18 2.71
2046 2087 9.209175 GACAAACTGAAGTAGTCAATAGAACAT 57.791 33.333 9.74 0.00 39.18 2.71
2047 2088 7.656137 GGACAAACTGAAGTAGTCAATAGAACA 59.344 37.037 14.28 0.00 39.18 3.18
2048 2089 7.656137 TGGACAAACTGAAGTAGTCAATAGAAC 59.344 37.037 14.28 1.43 39.18 3.01
2049 2090 7.732025 TGGACAAACTGAAGTAGTCAATAGAA 58.268 34.615 14.28 0.00 39.18 2.10
2050 2091 7.297936 TGGACAAACTGAAGTAGTCAATAGA 57.702 36.000 14.28 0.00 39.18 1.98
2051 2092 7.819415 TGATGGACAAACTGAAGTAGTCAATAG 59.181 37.037 14.28 0.00 39.18 1.73
2052 2093 7.676004 TGATGGACAAACTGAAGTAGTCAATA 58.324 34.615 14.28 4.79 39.18 1.90
2053 2094 6.533730 TGATGGACAAACTGAAGTAGTCAAT 58.466 36.000 14.28 10.26 39.18 2.57
2054 2095 5.924356 TGATGGACAAACTGAAGTAGTCAA 58.076 37.500 14.28 6.82 39.18 3.18
2055 2096 5.541845 CTGATGGACAAACTGAAGTAGTCA 58.458 41.667 14.28 5.22 39.18 3.41
2056 2097 4.390297 GCTGATGGACAAACTGAAGTAGTC 59.610 45.833 7.20 7.20 39.18 2.59
2057 2098 4.040952 AGCTGATGGACAAACTGAAGTAGT 59.959 41.667 0.00 0.00 42.89 2.73
2058 2099 4.573900 AGCTGATGGACAAACTGAAGTAG 58.426 43.478 0.00 0.00 0.00 2.57
2059 2100 4.623932 AGCTGATGGACAAACTGAAGTA 57.376 40.909 0.00 0.00 0.00 2.24
2060 2101 3.498774 AGCTGATGGACAAACTGAAGT 57.501 42.857 0.00 0.00 0.00 3.01
2061 2102 3.057736 CCAAGCTGATGGACAAACTGAAG 60.058 47.826 0.00 0.00 43.54 3.02
2062 2103 2.886523 CCAAGCTGATGGACAAACTGAA 59.113 45.455 0.00 0.00 43.54 3.02
2063 2104 2.507484 CCAAGCTGATGGACAAACTGA 58.493 47.619 0.00 0.00 43.54 3.41
2064 2105 1.542915 CCCAAGCTGATGGACAAACTG 59.457 52.381 5.98 0.00 43.54 3.16
2065 2106 1.548582 CCCCAAGCTGATGGACAAACT 60.549 52.381 5.98 0.00 43.54 2.66
2066 2107 0.890683 CCCCAAGCTGATGGACAAAC 59.109 55.000 5.98 0.00 43.54 2.93
2067 2108 0.251742 CCCCCAAGCTGATGGACAAA 60.252 55.000 5.98 0.00 43.54 2.83
2068 2109 1.383799 CCCCCAAGCTGATGGACAA 59.616 57.895 5.98 0.00 43.54 3.18
2069 2110 1.852157 ACCCCCAAGCTGATGGACA 60.852 57.895 5.98 0.00 43.54 4.02
2070 2111 1.379044 CACCCCCAAGCTGATGGAC 60.379 63.158 5.98 0.00 43.54 4.02
2071 2112 1.541118 TCACCCCCAAGCTGATGGA 60.541 57.895 5.98 0.00 43.54 3.41
2072 2113 1.379044 GTCACCCCCAAGCTGATGG 60.379 63.158 0.00 0.00 40.35 3.51
2073 2114 0.251297 TTGTCACCCCCAAGCTGATG 60.251 55.000 0.00 0.00 0.00 3.07
2074 2115 0.038744 CTTGTCACCCCCAAGCTGAT 59.961 55.000 0.00 0.00 33.55 2.90
2075 2116 1.352622 ACTTGTCACCCCCAAGCTGA 61.353 55.000 0.00 0.00 42.41 4.26
2076 2117 0.400213 TACTTGTCACCCCCAAGCTG 59.600 55.000 0.00 0.00 42.41 4.24
2077 2118 0.693049 CTACTTGTCACCCCCAAGCT 59.307 55.000 0.00 0.00 42.41 3.74
2078 2119 0.400594 ACTACTTGTCACCCCCAAGC 59.599 55.000 0.00 0.00 42.41 4.01
2079 2120 2.904434 AGTACTACTTGTCACCCCCAAG 59.096 50.000 0.00 0.00 43.87 3.61
2080 2121 2.980548 AGTACTACTTGTCACCCCCAA 58.019 47.619 0.00 0.00 0.00 4.12
2081 2122 2.708037 AGTACTACTTGTCACCCCCA 57.292 50.000 0.00 0.00 0.00 4.96
2082 2123 5.488262 TTTTAGTACTACTTGTCACCCCC 57.512 43.478 0.91 0.00 0.00 5.40
2083 2124 6.528321 ACTTTTTAGTACTACTTGTCACCCC 58.472 40.000 0.91 0.00 0.00 4.95
2084 2125 8.363390 ACTACTTTTTAGTACTACTTGTCACCC 58.637 37.037 0.91 0.00 0.00 4.61
2085 2126 9.755804 AACTACTTTTTAGTACTACTTGTCACC 57.244 33.333 0.91 0.00 0.00 4.02
2099 2140 8.687292 AAGTTGGGGACTAAACTACTTTTTAG 57.313 34.615 1.87 1.87 42.50 1.85
2100 2141 9.783081 CTAAGTTGGGGACTAAACTACTTTTTA 57.217 33.333 0.00 0.00 37.72 1.52
2101 2142 7.230108 GCTAAGTTGGGGACTAAACTACTTTTT 59.770 37.037 0.00 0.00 37.72 1.94
2102 2143 6.713903 GCTAAGTTGGGGACTAAACTACTTTT 59.286 38.462 0.00 0.00 37.72 2.27
2103 2144 6.236409 GCTAAGTTGGGGACTAAACTACTTT 58.764 40.000 0.00 0.00 37.72 2.66
2104 2145 5.280368 GGCTAAGTTGGGGACTAAACTACTT 60.280 44.000 0.00 0.00 37.72 2.24
2105 2146 4.224594 GGCTAAGTTGGGGACTAAACTACT 59.775 45.833 0.00 0.00 37.72 2.57
2106 2147 4.511527 GGCTAAGTTGGGGACTAAACTAC 58.488 47.826 0.00 0.00 37.72 2.73
2107 2148 3.520721 GGGCTAAGTTGGGGACTAAACTA 59.479 47.826 0.00 0.00 37.72 2.24
2108 2149 2.307980 GGGCTAAGTTGGGGACTAAACT 59.692 50.000 0.00 0.00 37.72 2.66
2109 2150 2.040679 TGGGCTAAGTTGGGGACTAAAC 59.959 50.000 0.00 0.00 37.72 2.01
2110 2151 2.350419 TGGGCTAAGTTGGGGACTAAA 58.650 47.619 0.00 0.00 37.72 1.85
2111 2152 2.047769 TGGGCTAAGTTGGGGACTAA 57.952 50.000 0.00 0.00 37.72 2.24
2112 2153 2.280308 ATGGGCTAAGTTGGGGACTA 57.720 50.000 0.00 0.00 37.72 2.59
2113 2154 2.280308 TATGGGCTAAGTTGGGGACT 57.720 50.000 0.00 0.00 41.47 3.85
2114 2155 3.021695 GTTTATGGGCTAAGTTGGGGAC 58.978 50.000 0.00 0.00 0.00 4.46
2115 2156 2.650322 TGTTTATGGGCTAAGTTGGGGA 59.350 45.455 0.00 0.00 0.00 4.81
2116 2157 3.094484 TGTTTATGGGCTAAGTTGGGG 57.906 47.619 0.00 0.00 0.00 4.96
2117 2158 4.536765 AGATGTTTATGGGCTAAGTTGGG 58.463 43.478 0.00 0.00 0.00 4.12
2118 2159 4.580580 GGAGATGTTTATGGGCTAAGTTGG 59.419 45.833 0.00 0.00 0.00 3.77
2119 2160 5.192927 TGGAGATGTTTATGGGCTAAGTTG 58.807 41.667 0.00 0.00 0.00 3.16
2120 2161 5.450818 TGGAGATGTTTATGGGCTAAGTT 57.549 39.130 0.00 0.00 0.00 2.66
2121 2162 5.450818 TTGGAGATGTTTATGGGCTAAGT 57.549 39.130 0.00 0.00 0.00 2.24
2122 2163 6.378280 ACTTTTGGAGATGTTTATGGGCTAAG 59.622 38.462 0.00 0.00 0.00 2.18
2123 2164 6.152661 CACTTTTGGAGATGTTTATGGGCTAA 59.847 38.462 0.00 0.00 0.00 3.09
2124 2165 5.652014 CACTTTTGGAGATGTTTATGGGCTA 59.348 40.000 0.00 0.00 0.00 3.93
2125 2166 4.463891 CACTTTTGGAGATGTTTATGGGCT 59.536 41.667 0.00 0.00 0.00 5.19
2126 2167 4.747810 CACTTTTGGAGATGTTTATGGGC 58.252 43.478 0.00 0.00 0.00 5.36
2135 2176 9.143631 CTAAATTTTTAGCCACTTTTGGAGATG 57.856 33.333 0.00 0.00 45.91 2.90
2136 2177 8.870116 ACTAAATTTTTAGCCACTTTTGGAGAT 58.130 29.630 9.45 0.00 45.91 2.75
2137 2178 8.245195 ACTAAATTTTTAGCCACTTTTGGAGA 57.755 30.769 9.45 0.00 45.91 3.71
2142 2183 9.620660 CGTGATACTAAATTTTTAGCCACTTTT 57.379 29.630 18.17 2.94 42.98 2.27
2143 2184 9.005777 TCGTGATACTAAATTTTTAGCCACTTT 57.994 29.630 18.17 3.41 42.98 2.66
2144 2185 8.556213 TCGTGATACTAAATTTTTAGCCACTT 57.444 30.769 18.17 3.89 42.98 3.16
2145 2186 8.732746 ATCGTGATACTAAATTTTTAGCCACT 57.267 30.769 18.17 7.38 42.98 4.00
2146 2187 8.827677 AGATCGTGATACTAAATTTTTAGCCAC 58.172 33.333 9.45 12.42 42.98 5.01
2147 2188 8.826710 CAGATCGTGATACTAAATTTTTAGCCA 58.173 33.333 9.45 4.01 42.98 4.75
2148 2189 9.042008 TCAGATCGTGATACTAAATTTTTAGCC 57.958 33.333 9.45 1.89 42.98 3.93
2163 2204 8.830580 CCAAATACTATTGTTTCAGATCGTGAT 58.169 33.333 0.00 0.00 34.17 3.06
2164 2205 7.201609 GCCAAATACTATTGTTTCAGATCGTGA 60.202 37.037 0.00 0.00 0.00 4.35
2165 2206 6.907212 GCCAAATACTATTGTTTCAGATCGTG 59.093 38.462 0.00 0.00 0.00 4.35
2166 2207 6.597672 TGCCAAATACTATTGTTTCAGATCGT 59.402 34.615 0.00 0.00 0.00 3.73
2167 2208 6.907212 GTGCCAAATACTATTGTTTCAGATCG 59.093 38.462 0.00 0.00 0.00 3.69
2168 2209 7.698130 GTGTGCCAAATACTATTGTTTCAGATC 59.302 37.037 0.00 0.00 0.00 2.75
2169 2210 7.362920 GGTGTGCCAAATACTATTGTTTCAGAT 60.363 37.037 0.00 0.00 34.09 2.90
2170 2211 6.072175 GGTGTGCCAAATACTATTGTTTCAGA 60.072 38.462 0.00 0.00 34.09 3.27
2171 2212 6.092748 GGTGTGCCAAATACTATTGTTTCAG 58.907 40.000 0.00 0.00 34.09 3.02
2172 2213 5.536538 TGGTGTGCCAAATACTATTGTTTCA 59.463 36.000 0.00 0.00 42.83 2.69
2173 2214 6.019779 TGGTGTGCCAAATACTATTGTTTC 57.980 37.500 0.00 0.00 42.83 2.78
2190 2231 2.917701 TTATTCGCTTGCATGGTGTG 57.082 45.000 1.34 0.00 0.00 3.82
2191 2232 4.082300 TGAAATTATTCGCTTGCATGGTGT 60.082 37.500 1.34 0.00 38.46 4.16
2192 2233 4.266029 GTGAAATTATTCGCTTGCATGGTG 59.734 41.667 1.34 0.00 41.75 4.17
2193 2234 4.423732 GTGAAATTATTCGCTTGCATGGT 58.576 39.130 1.34 0.00 41.75 3.55
2194 2235 3.483196 CGTGAAATTATTCGCTTGCATGG 59.517 43.478 1.34 0.00 42.61 3.66
2195 2236 4.202959 GTCGTGAAATTATTCGCTTGCATG 59.797 41.667 0.00 0.00 42.61 4.06
2196 2237 4.142708 TGTCGTGAAATTATTCGCTTGCAT 60.143 37.500 0.00 0.00 42.61 3.96
2197 2238 3.187432 TGTCGTGAAATTATTCGCTTGCA 59.813 39.130 1.28 0.00 42.61 4.08
2198 2239 3.742786 TGTCGTGAAATTATTCGCTTGC 58.257 40.909 1.28 0.00 42.61 4.01
2199 2240 5.203358 TCTGTCGTGAAATTATTCGCTTG 57.797 39.130 1.28 0.00 42.61 4.01
2200 2241 5.178623 TGTTCTGTCGTGAAATTATTCGCTT 59.821 36.000 1.28 0.00 42.61 4.68
2201 2242 4.688879 TGTTCTGTCGTGAAATTATTCGCT 59.311 37.500 1.28 0.00 42.61 4.93
2202 2243 4.953269 TGTTCTGTCGTGAAATTATTCGC 58.047 39.130 0.00 0.00 41.61 4.70
2203 2244 7.744276 TGATTTGTTCTGTCGTGAAATTATTCG 59.256 33.333 0.00 0.00 38.46 3.34
2204 2245 8.948853 TGATTTGTTCTGTCGTGAAATTATTC 57.051 30.769 0.00 0.00 36.04 1.75
2205 2246 7.538678 GCTGATTTGTTCTGTCGTGAAATTATT 59.461 33.333 0.00 0.00 0.00 1.40
2206 2247 7.023575 GCTGATTTGTTCTGTCGTGAAATTAT 58.976 34.615 0.00 0.00 0.00 1.28
2207 2248 6.017523 TGCTGATTTGTTCTGTCGTGAAATTA 60.018 34.615 0.00 0.00 0.00 1.40
2208 2249 5.215160 GCTGATTTGTTCTGTCGTGAAATT 58.785 37.500 0.00 0.00 0.00 1.82
2209 2250 4.275689 TGCTGATTTGTTCTGTCGTGAAAT 59.724 37.500 0.00 0.00 0.00 2.17
2210 2251 3.625313 TGCTGATTTGTTCTGTCGTGAAA 59.375 39.130 0.00 0.00 0.00 2.69
2211 2252 3.202097 TGCTGATTTGTTCTGTCGTGAA 58.798 40.909 0.00 0.00 0.00 3.18
2212 2253 2.832563 TGCTGATTTGTTCTGTCGTGA 58.167 42.857 0.00 0.00 0.00 4.35
2213 2254 3.242706 TGTTGCTGATTTGTTCTGTCGTG 60.243 43.478 0.00 0.00 0.00 4.35
2214 2255 2.942376 TGTTGCTGATTTGTTCTGTCGT 59.058 40.909 0.00 0.00 0.00 4.34
2215 2256 3.607422 TGTTGCTGATTTGTTCTGTCG 57.393 42.857 0.00 0.00 0.00 4.35
2216 2257 9.282247 CTATTAATGTTGCTGATTTGTTCTGTC 57.718 33.333 0.00 0.00 0.00 3.51
2217 2258 7.756722 GCTATTAATGTTGCTGATTTGTTCTGT 59.243 33.333 0.00 0.00 0.00 3.41
2218 2259 7.756272 TGCTATTAATGTTGCTGATTTGTTCTG 59.244 33.333 0.00 0.00 0.00 3.02
2219 2260 7.829725 TGCTATTAATGTTGCTGATTTGTTCT 58.170 30.769 0.00 0.00 0.00 3.01
2220 2261 8.638685 ATGCTATTAATGTTGCTGATTTGTTC 57.361 30.769 0.00 0.00 0.00 3.18
2221 2262 8.252417 TGATGCTATTAATGTTGCTGATTTGTT 58.748 29.630 0.00 0.00 0.00 2.83
2222 2263 7.774134 TGATGCTATTAATGTTGCTGATTTGT 58.226 30.769 0.00 0.00 0.00 2.83
2223 2264 8.812147 ATGATGCTATTAATGTTGCTGATTTG 57.188 30.769 0.00 0.00 0.00 2.32
2224 2265 7.806487 CGATGATGCTATTAATGTTGCTGATTT 59.194 33.333 0.00 0.00 0.00 2.17
2225 2266 7.303261 CGATGATGCTATTAATGTTGCTGATT 58.697 34.615 0.00 0.00 0.00 2.57
2226 2267 6.622245 GCGATGATGCTATTAATGTTGCTGAT 60.622 38.462 0.00 0.00 0.00 2.90
2227 2268 5.334337 GCGATGATGCTATTAATGTTGCTGA 60.334 40.000 0.00 0.00 0.00 4.26
2228 2269 4.849926 GCGATGATGCTATTAATGTTGCTG 59.150 41.667 0.00 0.00 0.00 4.41
2229 2270 4.758674 AGCGATGATGCTATTAATGTTGCT 59.241 37.500 0.00 0.00 45.14 3.91
2230 2271 5.039480 AGCGATGATGCTATTAATGTTGC 57.961 39.130 0.00 0.90 45.14 4.17
2231 2272 7.919313 AAAAGCGATGATGCTATTAATGTTG 57.081 32.000 0.00 0.00 46.60 3.33
2232 2273 9.616634 CATAAAAGCGATGATGCTATTAATGTT 57.383 29.630 0.00 0.00 46.60 2.71
2233 2274 9.002600 TCATAAAAGCGATGATGCTATTAATGT 57.997 29.630 0.00 0.00 46.60 2.71
2234 2275 9.486857 CTCATAAAAGCGATGATGCTATTAATG 57.513 33.333 0.00 0.00 46.60 1.90
2235 2276 9.440773 TCTCATAAAAGCGATGATGCTATTAAT 57.559 29.630 0.00 0.00 46.60 1.40
2236 2277 8.831715 TCTCATAAAAGCGATGATGCTATTAA 57.168 30.769 0.00 0.00 46.60 1.40
2237 2278 8.876790 CATCTCATAAAAGCGATGATGCTATTA 58.123 33.333 0.00 0.00 46.60 0.98
2238 2279 7.148289 CCATCTCATAAAAGCGATGATGCTATT 60.148 37.037 0.00 0.00 46.60 1.73
2239 2280 6.315642 CCATCTCATAAAAGCGATGATGCTAT 59.684 38.462 0.00 0.00 46.60 2.97
2240 2281 5.640783 CCATCTCATAAAAGCGATGATGCTA 59.359 40.000 0.00 0.00 46.60 3.49
2242 2283 4.214971 ACCATCTCATAAAAGCGATGATGC 59.785 41.667 0.00 0.00 36.29 3.91
2243 2284 5.936686 ACCATCTCATAAAAGCGATGATG 57.063 39.130 0.00 0.00 36.29 3.07
2244 2285 9.725019 TTTATACCATCTCATAAAAGCGATGAT 57.275 29.630 0.00 0.00 36.29 2.45
2245 2286 9.208022 CTTTATACCATCTCATAAAAGCGATGA 57.792 33.333 0.00 0.00 36.29 2.92
2246 2287 8.993121 ACTTTATACCATCTCATAAAAGCGATG 58.007 33.333 0.00 0.00 34.51 3.84
2247 2288 8.993121 CACTTTATACCATCTCATAAAAGCGAT 58.007 33.333 0.00 0.00 0.00 4.58
2248 2289 7.985184 ACACTTTATACCATCTCATAAAAGCGA 59.015 33.333 0.00 0.00 0.00 4.93
2249 2290 8.064222 CACACTTTATACCATCTCATAAAAGCG 58.936 37.037 0.00 0.00 0.00 4.68
2250 2291 7.857885 GCACACTTTATACCATCTCATAAAAGC 59.142 37.037 0.00 0.00 0.00 3.51
2251 2292 8.345565 GGCACACTTTATACCATCTCATAAAAG 58.654 37.037 0.00 0.00 0.00 2.27
2252 2293 7.831690 TGGCACACTTTATACCATCTCATAAAA 59.168 33.333 0.00 0.00 0.00 1.52
2253 2294 7.342581 TGGCACACTTTATACCATCTCATAAA 58.657 34.615 0.00 0.00 0.00 1.40
2254 2295 6.894682 TGGCACACTTTATACCATCTCATAA 58.105 36.000 0.00 0.00 0.00 1.90
2255 2296 6.493189 TGGCACACTTTATACCATCTCATA 57.507 37.500 0.00 0.00 0.00 2.15
2256 2297 5.372343 TGGCACACTTTATACCATCTCAT 57.628 39.130 0.00 0.00 0.00 2.90
2257 2298 4.835284 TGGCACACTTTATACCATCTCA 57.165 40.909 0.00 0.00 0.00 3.27
2273 2314 4.816385 TGGATAGATTCTCGAAAATGGCAC 59.184 41.667 0.00 0.00 0.00 5.01
2274 2315 4.816385 GTGGATAGATTCTCGAAAATGGCA 59.184 41.667 0.00 0.00 0.00 4.92
2275 2316 4.084328 CGTGGATAGATTCTCGAAAATGGC 60.084 45.833 0.00 0.00 0.00 4.40
2276 2317 5.175856 GTCGTGGATAGATTCTCGAAAATGG 59.824 44.000 0.00 0.00 34.53 3.16
2277 2318 5.748630 TGTCGTGGATAGATTCTCGAAAATG 59.251 40.000 0.00 0.00 34.53 2.32
2278 2319 5.902681 TGTCGTGGATAGATTCTCGAAAAT 58.097 37.500 0.00 0.00 34.53 1.82
2279 2320 5.319140 TGTCGTGGATAGATTCTCGAAAA 57.681 39.130 0.00 0.00 34.53 2.29
2280 2321 4.976224 TGTCGTGGATAGATTCTCGAAA 57.024 40.909 0.00 0.00 34.53 3.46
2281 2322 4.157105 TGTTGTCGTGGATAGATTCTCGAA 59.843 41.667 0.00 0.00 34.53 3.71
2282 2323 3.692593 TGTTGTCGTGGATAGATTCTCGA 59.307 43.478 0.00 0.00 0.00 4.04
2283 2324 4.028852 TGTTGTCGTGGATAGATTCTCG 57.971 45.455 0.00 0.00 0.00 4.04
2284 2325 6.910536 ATTTGTTGTCGTGGATAGATTCTC 57.089 37.500 0.00 0.00 0.00 2.87
2285 2326 7.041780 GCATATTTGTTGTCGTGGATAGATTCT 60.042 37.037 0.00 0.00 0.00 2.40
2286 2327 7.072030 GCATATTTGTTGTCGTGGATAGATTC 58.928 38.462 0.00 0.00 0.00 2.52
2287 2328 6.017109 GGCATATTTGTTGTCGTGGATAGATT 60.017 38.462 0.00 0.00 0.00 2.40
2288 2329 5.470098 GGCATATTTGTTGTCGTGGATAGAT 59.530 40.000 0.00 0.00 0.00 1.98
2289 2330 4.814234 GGCATATTTGTTGTCGTGGATAGA 59.186 41.667 0.00 0.00 0.00 1.98
2290 2331 4.574421 TGGCATATTTGTTGTCGTGGATAG 59.426 41.667 0.00 0.00 0.00 2.08
2291 2332 4.518249 TGGCATATTTGTTGTCGTGGATA 58.482 39.130 0.00 0.00 0.00 2.59
2292 2333 3.351740 TGGCATATTTGTTGTCGTGGAT 58.648 40.909 0.00 0.00 0.00 3.41
2293 2334 2.784347 TGGCATATTTGTTGTCGTGGA 58.216 42.857 0.00 0.00 0.00 4.02
2294 2335 3.489059 GGATGGCATATTTGTTGTCGTGG 60.489 47.826 0.00 0.00 0.00 4.94
2295 2336 3.489059 GGGATGGCATATTTGTTGTCGTG 60.489 47.826 0.00 0.00 0.00 4.35
2296 2337 2.687935 GGGATGGCATATTTGTTGTCGT 59.312 45.455 0.00 0.00 0.00 4.34
2297 2338 2.951642 AGGGATGGCATATTTGTTGTCG 59.048 45.455 0.00 0.00 0.00 4.35
2298 2339 3.319122 GGAGGGATGGCATATTTGTTGTC 59.681 47.826 0.00 0.00 0.00 3.18
2299 2340 3.299503 GGAGGGATGGCATATTTGTTGT 58.700 45.455 0.00 0.00 0.00 3.32
2300 2341 2.629617 GGGAGGGATGGCATATTTGTTG 59.370 50.000 0.00 0.00 0.00 3.33
2301 2342 2.426268 GGGGAGGGATGGCATATTTGTT 60.426 50.000 0.00 0.00 0.00 2.83
2302 2343 1.147817 GGGGAGGGATGGCATATTTGT 59.852 52.381 0.00 0.00 0.00 2.83
2303 2344 1.430464 AGGGGAGGGATGGCATATTTG 59.570 52.381 0.00 0.00 0.00 2.32
2304 2345 1.852301 AGGGGAGGGATGGCATATTT 58.148 50.000 0.00 0.00 0.00 1.40
2305 2346 1.713078 GAAGGGGAGGGATGGCATATT 59.287 52.381 0.00 0.00 0.00 1.28
2306 2347 1.131937 AGAAGGGGAGGGATGGCATAT 60.132 52.381 0.00 0.00 0.00 1.78
2307 2348 0.271927 AGAAGGGGAGGGATGGCATA 59.728 55.000 0.00 0.00 0.00 3.14
2308 2349 0.628668 AAGAAGGGGAGGGATGGCAT 60.629 55.000 0.00 0.00 0.00 4.40
2309 2350 0.850883 AAAGAAGGGGAGGGATGGCA 60.851 55.000 0.00 0.00 0.00 4.92
2310 2351 0.396278 CAAAGAAGGGGAGGGATGGC 60.396 60.000 0.00 0.00 0.00 4.40
2311 2352 1.002857 ACAAAGAAGGGGAGGGATGG 58.997 55.000 0.00 0.00 0.00 3.51
2312 2353 2.728007 GAACAAAGAAGGGGAGGGATG 58.272 52.381 0.00 0.00 0.00 3.51
2313 2354 1.282157 CGAACAAAGAAGGGGAGGGAT 59.718 52.381 0.00 0.00 0.00 3.85
2314 2355 0.690762 CGAACAAAGAAGGGGAGGGA 59.309 55.000 0.00 0.00 0.00 4.20
2315 2356 0.690762 TCGAACAAAGAAGGGGAGGG 59.309 55.000 0.00 0.00 0.00 4.30
2316 2357 1.339151 CCTCGAACAAAGAAGGGGAGG 60.339 57.143 0.00 0.00 34.27 4.30
2317 2358 1.348036 ACCTCGAACAAAGAAGGGGAG 59.652 52.381 0.00 0.00 0.00 4.30
2318 2359 1.430992 ACCTCGAACAAAGAAGGGGA 58.569 50.000 0.00 0.00 0.00 4.81


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.