Multiple sequence alignment - TraesCS7A01G292000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G292000 chr7A 100.000 7141 0 0 1524 8664 362736863 362744003 0.000000e+00 13188.0
1 TraesCS7A01G292000 chr7A 100.000 1114 0 0 1 1114 362735340 362736453 0.000000e+00 2058.0
2 TraesCS7A01G292000 chr7A 83.013 312 33 14 4511 4803 391902236 391902546 1.850000e-66 265.0
3 TraesCS7A01G292000 chr7A 79.614 363 52 11 5040 5389 32186216 32185863 3.130000e-59 241.0
4 TraesCS7A01G292000 chr7A 91.720 157 10 2 3618 3774 362738638 362738791 1.890000e-51 215.0
5 TraesCS7A01G292000 chr7A 91.720 157 10 2 3299 3452 362738957 362739113 1.890000e-51 215.0
6 TraesCS7A01G292000 chr7A 82.166 157 28 0 8358 8514 3326898 3326742 1.520000e-27 135.0
7 TraesCS7A01G292000 chr7D 96.250 2720 59 16 5040 7738 317413402 317410705 0.000000e+00 4418.0
8 TraesCS7A01G292000 chr7D 97.297 1591 33 5 2287 3869 317429209 317427621 0.000000e+00 2691.0
9 TraesCS7A01G292000 chr7D 97.766 940 21 0 3864 4803 317414338 317413399 0.000000e+00 1620.0
10 TraesCS7A01G292000 chr7D 96.410 780 8 3 1524 2286 317430020 317429244 0.000000e+00 1267.0
11 TraesCS7A01G292000 chr7D 89.629 781 59 8 1 778 317431154 317430393 0.000000e+00 974.0
12 TraesCS7A01G292000 chr7D 93.066 548 19 6 7734 8264 317410672 317410127 0.000000e+00 784.0
13 TraesCS7A01G292000 chr7D 84.175 594 69 11 4228 4803 85555937 85556523 3.530000e-153 553.0
14 TraesCS7A01G292000 chr7D 91.570 344 22 2 8306 8649 317410159 317409823 1.320000e-127 468.0
15 TraesCS7A01G292000 chr7D 94.902 255 11 2 4792 5046 431905246 431905498 1.750000e-106 398.0
16 TraesCS7A01G292000 chr7D 94.821 251 6 4 869 1114 317430393 317430145 1.360000e-102 385.0
17 TraesCS7A01G292000 chr7D 78.427 496 72 19 5040 5514 353919348 353919829 3.060000e-74 291.0
18 TraesCS7A01G292000 chr7D 91.720 157 10 2 3299 3452 317427872 317427716 1.890000e-51 215.0
19 TraesCS7A01G292000 chr7D 90.741 162 12 2 3794 3952 317428044 317427883 6.810000e-51 213.0
20 TraesCS7A01G292000 chr7D 88.636 176 16 2 626 797 498501943 498501768 2.450000e-50 211.0
21 TraesCS7A01G292000 chr7D 91.083 157 11 2 3618 3774 317428192 317428039 8.810000e-50 209.0
22 TraesCS7A01G292000 chr7D 80.925 173 16 11 8087 8245 588785545 588785376 4.250000e-23 121.0
23 TraesCS7A01G292000 chr7D 100.000 41 0 0 8264 8304 317410159 317410119 9.330000e-10 76.8
24 TraesCS7A01G292000 chr7B 95.860 2705 87 15 5040 7738 287166793 287164108 0.000000e+00 4351.0
25 TraesCS7A01G292000 chr7B 95.272 2094 61 13 1990 4049 287169328 287167239 0.000000e+00 3284.0
26 TraesCS7A01G292000 chr7B 91.171 589 30 7 7734 8304 287164075 287163491 0.000000e+00 780.0
27 TraesCS7A01G292000 chr7B 97.959 441 9 0 1524 1964 287169759 287169319 0.000000e+00 765.0
28 TraesCS7A01G292000 chr7B 97.111 450 12 1 4354 4803 287167238 287166790 0.000000e+00 758.0
29 TraesCS7A01G292000 chr7B 94.538 238 8 2 882 1114 287170121 287169884 6.390000e-96 363.0
30 TraesCS7A01G292000 chr7B 82.514 366 40 9 5040 5393 685891735 685892088 5.080000e-77 300.0
31 TraesCS7A01G292000 chr7B 87.923 207 21 3 8434 8638 287163469 287163265 3.130000e-59 241.0
32 TraesCS7A01G292000 chr7B 91.925 161 11 1 3794 3952 287167842 287167682 3.150000e-54 224.0
33 TraesCS7A01G292000 chr7B 78.492 358 58 8 5040 5385 282918614 282918264 5.270000e-52 217.0
34 TraesCS7A01G292000 chr7B 91.720 157 10 2 3299 3452 287167671 287167515 1.890000e-51 215.0
35 TraesCS7A01G292000 chr7B 89.172 157 14 2 3618 3774 287167990 287167837 8.880000e-45 193.0
36 TraesCS7A01G292000 chr6B 85.859 594 60 11 4228 4803 54763185 54763772 2.070000e-170 610.0
37 TraesCS7A01G292000 chr6B 84.848 594 66 12 4228 4803 9255738 9255151 2.100000e-160 577.0
38 TraesCS7A01G292000 chr6B 76.808 401 63 18 5135 5524 265922568 265922949 1.910000e-46 198.0
39 TraesCS7A01G292000 chr6B 76.060 401 65 18 5135 5524 265974777 265975157 6.910000e-41 180.0
40 TraesCS7A01G292000 chr1D 85.354 594 63 15 4228 4803 478408741 478409328 2.080000e-165 593.0
41 TraesCS7A01G292000 chr1D 83.893 596 72 13 4228 4805 80300883 80301472 1.640000e-151 547.0
42 TraesCS7A01G292000 chr1D 96.000 250 10 0 4797 5046 203949885 203950134 2.910000e-109 407.0
43 TraesCS7A01G292000 chr1D 80.527 493 67 13 5040 5518 2263860 2263383 1.380000e-92 351.0
44 TraesCS7A01G292000 chr1D 89.773 176 13 2 626 797 450611110 450610936 4.070000e-53 220.0
45 TraesCS7A01G292000 chr1D 85.294 204 22 3 626 821 457970013 457970216 4.100000e-48 204.0
46 TraesCS7A01G292000 chr1D 87.151 179 20 2 622 797 259254057 259254235 5.300000e-47 200.0
47 TraesCS7A01G292000 chr1D 86.740 181 20 2 620 797 400576950 400577129 1.910000e-46 198.0
48 TraesCS7A01G292000 chr1D 87.574 169 19 1 625 791 345953710 345953878 2.470000e-45 195.0
49 TraesCS7A01G292000 chr1D 86.264 182 20 2 620 797 91189862 91190042 8.880000e-45 193.0
50 TraesCS7A01G292000 chr1D 86.782 174 21 1 620 791 193009152 193009325 8.880000e-45 193.0
51 TraesCS7A01G292000 chr1D 86.517 178 21 1 624 798 256372913 256372736 8.880000e-45 193.0
52 TraesCS7A01G292000 chr1D 86.188 181 21 2 620 797 292446810 292446631 8.880000e-45 193.0
53 TraesCS7A01G292000 chr1D 86.441 177 20 1 625 797 104264670 104264846 3.190000e-44 191.0
54 TraesCS7A01G292000 chr1D 84.500 200 23 2 630 821 268943632 268943831 3.190000e-44 191.0
55 TraesCS7A01G292000 chr4D 85.185 594 63 11 4228 4803 297304058 297303472 3.480000e-163 586.0
56 TraesCS7A01G292000 chr4D 98.333 240 4 0 4805 5044 30506427 30506666 1.040000e-113 422.0
57 TraesCS7A01G292000 chr4D 97.917 240 5 0 4805 5044 11504116 11504355 4.840000e-112 416.0
58 TraesCS7A01G292000 chr4D 97.500 240 6 0 4805 5044 484764411 484764650 2.250000e-110 411.0
59 TraesCS7A01G292000 chr4D 97.095 241 7 0 4805 5045 76611944 76612184 2.910000e-109 407.0
60 TraesCS7A01G292000 chr4D 80.041 491 65 15 5040 5514 297303475 297303002 5.010000e-87 333.0
61 TraesCS7A01G292000 chr4D 87.931 174 19 1 626 797 6734854 6734681 4.100000e-48 204.0
62 TraesCS7A01G292000 chr4D 87.222 180 20 3 620 797 27904403 27904581 1.470000e-47 202.0
63 TraesCS7A01G292000 chr4D 87.500 176 18 1 626 797 464998386 464998211 5.300000e-47 200.0
64 TraesCS7A01G292000 chr4D 85.354 198 22 2 626 816 378301393 378301590 1.910000e-46 198.0
65 TraesCS7A01G292000 chr6D 84.848 594 66 15 4228 4803 460781053 460780466 2.100000e-160 577.0
66 TraesCS7A01G292000 chr6D 97.510 241 6 0 4805 5045 80054079 80054319 6.260000e-111 412.0
67 TraesCS7A01G292000 chr6D 97.500 240 6 0 4805 5044 227007763 227008002 2.250000e-110 411.0
68 TraesCS7A01G292000 chr6D 78.860 421 66 11 1 408 137487606 137487196 6.670000e-66 263.0
69 TraesCS7A01G292000 chr6D 88.202 178 17 1 624 797 462491268 462491445 8.810000e-50 209.0
70 TraesCS7A01G292000 chr6D 87.293 181 19 2 620 797 264840493 264840672 4.100000e-48 204.0
71 TraesCS7A01G292000 chr6D 87.429 175 19 2 626 798 376120828 376120655 1.910000e-46 198.0
72 TraesCS7A01G292000 chr6D 87.006 177 20 1 624 797 467827445 467827269 6.860000e-46 196.0
73 TraesCS7A01G292000 chr2D 84.706 595 66 11 4228 4803 218040968 218041556 9.760000e-159 571.0
74 TraesCS7A01G292000 chr2D 80.573 489 61 16 5040 5512 218041553 218042023 6.440000e-91 346.0
75 TraesCS7A01G292000 chr2D 84.821 112 11 2 5409 5514 220960607 220960718 3.310000e-19 108.0
76 TraesCS7A01G292000 chr2D 92.308 52 3 1 535 585 5708551 5708602 1.210000e-08 73.1
77 TraesCS7A01G292000 chr3B 85.258 563 72 6 4246 4803 279655680 279655124 3.510000e-158 569.0
78 TraesCS7A01G292000 chr3B 81.944 360 43 9 5042 5389 559747874 559747525 1.420000e-72 285.0
79 TraesCS7A01G292000 chr3B 78.492 358 56 8 5040 5383 724604655 724605005 1.890000e-51 215.0
80 TraesCS7A01G292000 chr3A 84.512 594 68 8 4228 4803 36758329 36757742 4.540000e-157 566.0
81 TraesCS7A01G292000 chr3A 84.043 282 41 3 1 279 595642974 595643254 1.430000e-67 268.0
82 TraesCS7A01G292000 chr5B 84.283 579 80 8 4228 4803 86242984 86242414 9.830000e-154 555.0
83 TraesCS7A01G292000 chr5B 84.211 133 18 3 5384 5514 665976059 665975928 9.130000e-25 126.0
84 TraesCS7A01G292000 chr4A 88.360 378 38 2 4228 4605 625759650 625759279 4.770000e-122 449.0
85 TraesCS7A01G292000 chr4A 80.040 501 52 27 5040 5521 207372229 207371758 2.330000e-85 327.0
86 TraesCS7A01G292000 chr4A 86.432 199 20 3 627 821 681652258 681652453 2.450000e-50 211.0
87 TraesCS7A01G292000 chr5A 97.500 240 6 0 4805 5044 522073677 522073916 2.250000e-110 411.0
88 TraesCS7A01G292000 chr5A 82.407 324 39 7 5080 5389 531530110 531530429 5.160000e-67 267.0
89 TraesCS7A01G292000 chr5A 89.326 178 15 2 624 797 689662203 689662026 4.070000e-53 220.0
90 TraesCS7A01G292000 chr5A 81.657 169 24 4 2 170 541932090 541932251 5.460000e-27 134.0
91 TraesCS7A01G292000 chr3D 80.488 492 63 17 5040 5514 62183711 62183236 6.440000e-91 346.0
92 TraesCS7A01G292000 chr3D 80.331 483 69 16 5040 5513 323643633 323644098 8.330000e-90 342.0
93 TraesCS7A01G292000 chr3D 84.274 248 33 5 26 269 61559559 61559314 4.040000e-58 237.0
94 TraesCS7A01G292000 chr3D 90.395 177 13 3 624 797 553320427 553320252 6.770000e-56 230.0
95 TraesCS7A01G292000 chr3D 88.506 174 16 1 628 797 285786752 285786579 3.170000e-49 207.0
96 TraesCS7A01G292000 chr1A 86.716 271 26 4 5557 5823 82131185 82130921 8.510000e-75 292.0
97 TraesCS7A01G292000 chr6A 84.585 253 35 3 1 250 511621963 511621712 1.870000e-61 248.0
98 TraesCS7A01G292000 chr6A 89.444 180 15 2 622 797 310189060 310189239 3.150000e-54 224.0
99 TraesCS7A01G292000 chr6A 89.011 182 16 3 620 797 239102889 239102708 1.130000e-53 222.0
100 TraesCS7A01G292000 chr6A 89.714 175 15 1 626 797 531702307 531702133 4.070000e-53 220.0
101 TraesCS7A01G292000 chr6A 88.764 178 16 1 624 797 486825591 486825768 1.890000e-51 215.0
102 TraesCS7A01G292000 chr6A 85.714 203 22 2 621 816 615729136 615728934 3.170000e-49 207.0
103 TraesCS7A01G292000 chr5D 87.845 181 20 2 618 797 323779172 323778993 2.450000e-50 211.0
104 TraesCS7A01G292000 chr5D 87.432 183 19 2 618 797 175979937 175979756 3.170000e-49 207.0
105 TraesCS7A01G292000 chr5D 82.090 134 17 4 5383 5514 528828406 528828278 3.310000e-19 108.0
106 TraesCS7A01G292000 chr4B 88.202 178 17 1 624 797 218586153 218586330 8.810000e-50 209.0
107 TraesCS7A01G292000 chr4B 86.224 196 23 3 606 797 325992410 325992605 8.810000e-50 209.0
108 TraesCS7A01G292000 chrUn 83.916 143 16 6 5374 5514 308102153 308102290 7.060000e-26 130.0
109 TraesCS7A01G292000 chr2B 83.784 74 12 0 321 394 796158696 796158769 4.340000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G292000 chr7A 362735340 362744003 8663 False 7623.000000 13188 100.000000 1 8664 2 chr7A.!!$F2 8663
1 TraesCS7A01G292000 chr7D 317409823 317414338 4515 True 1473.360000 4418 95.730400 3864 8649 5 chr7D.!!$R3 4785
2 TraesCS7A01G292000 chr7D 317427621 317431154 3533 True 850.571429 2691 93.100143 1 3952 7 chr7D.!!$R4 3951
3 TraesCS7A01G292000 chr7D 85555937 85556523 586 False 553.000000 553 84.175000 4228 4803 1 chr7D.!!$F1 575
4 TraesCS7A01G292000 chr7B 287163265 287170121 6856 True 1117.400000 4351 93.265100 882 8638 10 chr7B.!!$R2 7756
5 TraesCS7A01G292000 chr6B 54763185 54763772 587 False 610.000000 610 85.859000 4228 4803 1 chr6B.!!$F1 575
6 TraesCS7A01G292000 chr6B 9255151 9255738 587 True 577.000000 577 84.848000 4228 4803 1 chr6B.!!$R1 575
7 TraesCS7A01G292000 chr1D 478408741 478409328 587 False 593.000000 593 85.354000 4228 4803 1 chr1D.!!$F11 575
8 TraesCS7A01G292000 chr1D 80300883 80301472 589 False 547.000000 547 83.893000 4228 4805 1 chr1D.!!$F1 577
9 TraesCS7A01G292000 chr4D 297303002 297304058 1056 True 459.500000 586 82.613000 4228 5514 2 chr4D.!!$R3 1286
10 TraesCS7A01G292000 chr6D 460780466 460781053 587 True 577.000000 577 84.848000 4228 4803 1 chr6D.!!$R3 575
11 TraesCS7A01G292000 chr2D 218040968 218042023 1055 False 458.500000 571 82.639500 4228 5512 2 chr2D.!!$F3 1284
12 TraesCS7A01G292000 chr3B 279655124 279655680 556 True 569.000000 569 85.258000 4246 4803 1 chr3B.!!$R1 557
13 TraesCS7A01G292000 chr3A 36757742 36758329 587 True 566.000000 566 84.512000 4228 4803 1 chr3A.!!$R1 575
14 TraesCS7A01G292000 chr5B 86242414 86242984 570 True 555.000000 555 84.283000 4228 4803 1 chr5B.!!$R1 575

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
393 395 0.036388 ACAAGACCGCGTTGGATGAT 60.036 50.000 4.92 0.00 42.00 2.45 F
427 429 0.322322 TGATTACGGGAGGTTTGCGT 59.678 50.000 0.00 0.00 0.00 5.24 F
587 589 0.323451 ACAATCTTTTCGCCCCCTCC 60.323 55.000 0.00 0.00 0.00 4.30 F
1687 1696 0.739462 CGCTCGACCTATTTGCCACA 60.739 55.000 0.00 0.00 0.00 4.17 F
2592 2660 0.110295 TACACCACACAATGCTGCCT 59.890 50.000 0.00 0.00 0.00 4.75 F
2799 2867 0.514255 CGGATAGTGCATGCCATTCG 59.486 55.000 16.68 12.35 0.00 3.34 F
4165 4238 1.296715 CCGCTTGGCAGAGTAAGGT 59.703 57.895 0.00 0.00 0.00 3.50 F
4820 4913 0.039618 GCCACTCCCTCCATTCCAAA 59.960 55.000 0.00 0.00 0.00 3.28 F
5021 5114 0.032017 ACGGGGATAGAGGAAGCACT 60.032 55.000 0.00 0.00 0.00 4.40 F
5355 5458 1.144691 TGTTGTGGATCCACCCTGAA 58.855 50.000 36.27 23.44 45.63 3.02 F
6849 6969 1.377987 GGGGCAAGACGGTATGCAA 60.378 57.895 17.02 0.00 44.32 4.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2289 2350 2.673775 ACATTCACCCATTCACCACA 57.326 45.000 0.0 0.00 0.00 4.17 R
2320 2381 9.405587 CAGAATACGGAAAATTTAGAAAAAGCA 57.594 29.630 0.0 0.00 0.00 3.91 R
2497 2563 2.923655 CACTGCATAGTACGTCCAAGTG 59.076 50.000 0.0 6.64 34.74 3.16 R
3471 3542 2.041620 CTCAAAACCCCCATCTCCTTGA 59.958 50.000 0.0 0.00 0.00 3.02 R
4165 4238 1.304630 ATCCAGCAGCCACATTGCA 60.305 52.632 0.0 0.00 43.92 4.08 R
4724 4815 0.593128 GCAACGAGTGAACAGCCAAT 59.407 50.000 0.0 0.00 0.00 3.16 R
5002 5095 0.032017 AGTGCTTCCTCTATCCCCGT 60.032 55.000 0.0 0.00 0.00 5.28 R
5672 5778 0.649475 CTCTCGATCTTTTGCTGCCG 59.351 55.000 0.0 0.00 0.00 5.69 R
6849 6969 3.265479 ACCTCTGCAAAGAAGATTAGGCT 59.735 43.478 0.0 0.00 0.00 4.58 R
7252 7372 2.965147 TTGCGTCATTCGTGCCTGC 61.965 57.895 0.0 0.00 42.13 4.85 R
8333 8518 0.175760 AGCACGAATAGCACCGTCAT 59.824 50.000 0.0 0.00 36.83 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 3.953775 CAGGTCCACCGGCACCTT 61.954 66.667 16.04 1.82 41.41 3.50
115 116 1.300971 CGACAGGTTCTCCGACGGTA 61.301 60.000 14.79 0.13 39.05 4.02
124 125 2.125832 CCGACGGTACCATGCGTT 60.126 61.111 13.54 0.00 0.00 4.84
135 136 1.133253 CATGCGTTGGCGACAGAAG 59.867 57.895 5.58 0.00 44.54 2.85
139 140 1.901650 GCGTTGGCGACAGAAGGAAG 61.902 60.000 5.58 0.00 44.54 3.46
157 158 2.133858 AGGAGAGGGTGGGAGAAAAA 57.866 50.000 0.00 0.00 0.00 1.94
196 197 1.510844 CGGCGGGGAATGGAAAAAG 59.489 57.895 0.00 0.00 0.00 2.27
197 198 0.963355 CGGCGGGGAATGGAAAAAGA 60.963 55.000 0.00 0.00 0.00 2.52
198 199 0.817654 GGCGGGGAATGGAAAAAGAG 59.182 55.000 0.00 0.00 0.00 2.85
199 200 1.615919 GGCGGGGAATGGAAAAAGAGA 60.616 52.381 0.00 0.00 0.00 3.10
200 201 1.745653 GCGGGGAATGGAAAAAGAGAG 59.254 52.381 0.00 0.00 0.00 3.20
201 202 2.880167 GCGGGGAATGGAAAAAGAGAGT 60.880 50.000 0.00 0.00 0.00 3.24
202 203 2.749621 CGGGGAATGGAAAAAGAGAGTG 59.250 50.000 0.00 0.00 0.00 3.51
203 204 3.559171 CGGGGAATGGAAAAAGAGAGTGA 60.559 47.826 0.00 0.00 0.00 3.41
207 209 5.504853 GGAATGGAAAAAGAGAGTGAGGAT 58.495 41.667 0.00 0.00 0.00 3.24
213 215 5.459536 AAAAAGAGAGTGAGGATTTTGGC 57.540 39.130 0.00 0.00 0.00 4.52
217 219 1.003839 AGTGAGGATTTTGGCGCGA 60.004 52.632 12.10 0.00 0.00 5.87
265 267 1.313091 GGCTACGCCTTCCTTTTGGG 61.313 60.000 0.00 0.00 46.69 4.12
272 274 2.203567 TTCCTTTTGGGTGGGCCG 60.204 61.111 0.00 0.00 40.87 6.13
275 277 4.293671 CTTTTGGGTGGGCCGGGA 62.294 66.667 2.18 0.00 34.97 5.14
302 304 1.542547 GGGGAGAAGAGCAACGTTTCA 60.543 52.381 0.00 0.00 0.00 2.69
308 310 3.002656 AGAAGAGCAACGTTTCACATGTG 59.997 43.478 20.18 20.18 0.00 3.21
329 331 1.210967 TGGACTCCCAACGTTTGTCTT 59.789 47.619 0.00 0.00 40.09 3.01
354 356 2.679355 TGCGGAAGAAAACACATTCG 57.321 45.000 0.00 0.00 34.46 3.34
361 363 0.452122 GAAAACACATTCGGACCGCG 60.452 55.000 9.66 0.00 0.00 6.46
392 394 0.604073 TACAAGACCGCGTTGGATGA 59.396 50.000 4.92 0.00 42.00 2.92
393 395 0.036388 ACAAGACCGCGTTGGATGAT 60.036 50.000 4.92 0.00 42.00 2.45
405 407 3.873781 GGATGATTTCCGTGGTCCA 57.126 52.632 0.00 0.00 33.93 4.02
408 410 2.158755 GGATGATTTCCGTGGTCCAGAT 60.159 50.000 0.00 0.00 33.93 2.90
427 429 0.322322 TGATTACGGGAGGTTTGCGT 59.678 50.000 0.00 0.00 0.00 5.24
434 436 2.051345 GAGGTTTGCGTGGCGTTG 60.051 61.111 0.00 0.00 0.00 4.10
580 582 2.789092 CGCTGGATCACAATCTTTTCGC 60.789 50.000 0.00 0.00 32.12 4.70
585 587 0.404040 TCACAATCTTTTCGCCCCCT 59.596 50.000 0.00 0.00 0.00 4.79
586 588 0.811281 CACAATCTTTTCGCCCCCTC 59.189 55.000 0.00 0.00 0.00 4.30
587 589 0.323451 ACAATCTTTTCGCCCCCTCC 60.323 55.000 0.00 0.00 0.00 4.30
588 590 1.037579 CAATCTTTTCGCCCCCTCCC 61.038 60.000 0.00 0.00 0.00 4.30
589 591 2.224805 AATCTTTTCGCCCCCTCCCC 62.225 60.000 0.00 0.00 0.00 4.81
590 592 4.442454 CTTTTCGCCCCCTCCCCC 62.442 72.222 0.00 0.00 0.00 5.40
611 613 2.882876 GACGCGCAGGACCTTCTA 59.117 61.111 5.73 0.00 0.00 2.10
612 614 1.226717 GACGCGCAGGACCTTCTAG 60.227 63.158 5.73 0.00 0.00 2.43
627 629 4.957327 ACCTTCTAGCCTCAACTACTAAGG 59.043 45.833 0.00 0.00 36.80 2.69
628 630 5.202004 CCTTCTAGCCTCAACTACTAAGGA 58.798 45.833 0.00 0.00 34.72 3.36
635 637 5.127356 AGCCTCAACTACTAAGGACATGTAC 59.873 44.000 0.00 0.00 31.44 2.90
648 650 7.630242 AAGGACATGTACAATGGTTGATAAG 57.370 36.000 11.55 0.00 0.00 1.73
654 656 9.547753 ACATGTACAATGGTTGATAAGATAGTC 57.452 33.333 0.00 0.00 0.00 2.59
760 764 5.063564 GTCATCCCTAAAAACACGATGAGAC 59.936 44.000 0.00 0.00 39.84 3.36
766 770 7.279981 TCCCTAAAAACACGATGAGACATATTG 59.720 37.037 0.00 0.00 0.00 1.90
773 777 6.106003 ACACGATGAGACATATTGTGCTAAA 58.894 36.000 0.00 0.00 41.55 1.85
777 781 7.712639 ACGATGAGACATATTGTGCTAAAAGAT 59.287 33.333 0.00 0.00 0.00 2.40
778 782 8.219769 CGATGAGACATATTGTGCTAAAAGATC 58.780 37.037 0.00 0.00 0.00 2.75
779 783 8.969260 ATGAGACATATTGTGCTAAAAGATCA 57.031 30.769 0.00 0.00 0.00 2.92
780 784 8.969260 TGAGACATATTGTGCTAAAAGATCAT 57.031 30.769 0.00 0.00 0.00 2.45
781 785 9.399797 TGAGACATATTGTGCTAAAAGATCATT 57.600 29.630 0.00 0.00 0.00 2.57
788 792 8.976986 ATTGTGCTAAAAGATCATTTCTTGTC 57.023 30.769 0.00 0.00 44.09 3.18
789 793 7.750229 TGTGCTAAAAGATCATTTCTTGTCT 57.250 32.000 0.00 0.00 44.09 3.41
790 794 8.169977 TGTGCTAAAAGATCATTTCTTGTCTT 57.830 30.769 0.00 0.00 44.09 3.01
791 795 8.632679 TGTGCTAAAAGATCATTTCTTGTCTTT 58.367 29.630 0.00 0.00 44.09 2.52
792 796 9.468532 GTGCTAAAAGATCATTTCTTGTCTTTT 57.531 29.630 14.11 14.11 44.09 2.27
793 797 9.683069 TGCTAAAAGATCATTTCTTGTCTTTTC 57.317 29.630 13.31 4.11 44.09 2.29
794 798 9.905171 GCTAAAAGATCATTTCTTGTCTTTTCT 57.095 29.630 13.31 0.00 44.09 2.52
806 810 9.838339 TTTCTTGTCTTTTCTTATGAGTTCTCT 57.162 29.630 1.53 0.00 0.00 3.10
807 811 9.482627 TTCTTGTCTTTTCTTATGAGTTCTCTC 57.517 33.333 1.53 0.00 40.79 3.20
818 822 4.527509 TGAGTTCTCTCAACTCCACATC 57.472 45.455 11.11 0.00 46.17 3.06
819 823 3.897505 TGAGTTCTCTCAACTCCACATCA 59.102 43.478 11.11 0.00 46.17 3.07
820 824 4.529769 TGAGTTCTCTCAACTCCACATCAT 59.470 41.667 11.11 0.00 46.17 2.45
821 825 5.012458 TGAGTTCTCTCAACTCCACATCATT 59.988 40.000 11.11 0.00 46.17 2.57
822 826 6.211384 TGAGTTCTCTCAACTCCACATCATTA 59.789 38.462 11.11 0.00 46.17 1.90
823 827 7.093156 TGAGTTCTCTCAACTCCACATCATTAT 60.093 37.037 11.11 0.00 46.17 1.28
824 828 8.311395 AGTTCTCTCAACTCCACATCATTATA 57.689 34.615 0.00 0.00 0.00 0.98
825 829 8.200792 AGTTCTCTCAACTCCACATCATTATAC 58.799 37.037 0.00 0.00 0.00 1.47
826 830 7.660030 TCTCTCAACTCCACATCATTATACA 57.340 36.000 0.00 0.00 0.00 2.29
827 831 8.255111 TCTCTCAACTCCACATCATTATACAT 57.745 34.615 0.00 0.00 0.00 2.29
828 832 8.708378 TCTCTCAACTCCACATCATTATACATT 58.292 33.333 0.00 0.00 0.00 2.71
829 833 9.987272 CTCTCAACTCCACATCATTATACATTA 57.013 33.333 0.00 0.00 0.00 1.90
837 841 9.394767 TCCACATCATTATACATTATACATGCC 57.605 33.333 0.00 0.00 0.00 4.40
838 842 9.399797 CCACATCATTATACATTATACATGCCT 57.600 33.333 0.00 0.00 0.00 4.75
849 853 8.574251 ACATTATACATGCCTAAAACAACAGA 57.426 30.769 0.00 0.00 0.00 3.41
850 854 9.019656 ACATTATACATGCCTAAAACAACAGAA 57.980 29.630 0.00 0.00 0.00 3.02
851 855 9.853555 CATTATACATGCCTAAAACAACAGAAA 57.146 29.630 0.00 0.00 0.00 2.52
853 857 9.685828 TTATACATGCCTAAAACAACAGAAAAC 57.314 29.630 0.00 0.00 0.00 2.43
854 858 6.220726 ACATGCCTAAAACAACAGAAAACT 57.779 33.333 0.00 0.00 0.00 2.66
855 859 6.639563 ACATGCCTAAAACAACAGAAAACTT 58.360 32.000 0.00 0.00 0.00 2.66
856 860 7.102993 ACATGCCTAAAACAACAGAAAACTTT 58.897 30.769 0.00 0.00 0.00 2.66
857 861 7.606073 ACATGCCTAAAACAACAGAAAACTTTT 59.394 29.630 0.00 0.00 0.00 2.27
858 862 7.971183 TGCCTAAAACAACAGAAAACTTTTT 57.029 28.000 0.00 0.00 0.00 1.94
859 863 9.660180 ATGCCTAAAACAACAGAAAACTTTTTA 57.340 25.926 0.00 0.00 0.00 1.52
860 864 9.145865 TGCCTAAAACAACAGAAAACTTTTTAG 57.854 29.630 0.00 0.00 36.75 1.85
862 866 9.093970 CCTAAAACAACAGAAAACTTTTTAGGG 57.906 33.333 17.40 5.05 45.12 3.53
863 867 6.978343 AAACAACAGAAAACTTTTTAGGGC 57.022 33.333 0.00 0.00 0.00 5.19
864 868 5.932619 ACAACAGAAAACTTTTTAGGGCT 57.067 34.783 0.00 0.00 0.00 5.19
865 869 5.660460 ACAACAGAAAACTTTTTAGGGCTG 58.340 37.500 0.00 0.00 0.00 4.85
866 870 5.186992 ACAACAGAAAACTTTTTAGGGCTGT 59.813 36.000 0.00 0.00 34.79 4.40
867 871 5.515797 ACAGAAAACTTTTTAGGGCTGTC 57.484 39.130 0.00 0.00 30.45 3.51
877 881 2.128771 TAGGGCTGTCTGAAATTGGC 57.871 50.000 0.00 0.00 0.00 4.52
885 889 4.794655 GCTGTCTGAAATTGGCCGTAAAAA 60.795 41.667 0.00 0.00 0.00 1.94
968 976 1.118356 ATCCCACTCGCCAGATCTCC 61.118 60.000 0.00 0.00 0.00 3.71
1570 1579 1.083401 CTCGTCGCTGTGTTGTTGC 60.083 57.895 0.00 0.00 0.00 4.17
1687 1696 0.739462 CGCTCGACCTATTTGCCACA 60.739 55.000 0.00 0.00 0.00 4.17
2146 2172 9.991906 CATAGCAATGGATTTCATAGGAATTTT 57.008 29.630 0.00 0.00 34.44 1.82
2258 2285 0.984995 AGAGGCCCTAAACTGTGTCC 59.015 55.000 0.00 0.00 0.00 4.02
2289 2350 8.669946 AATCTTCTTCTTCTTCTTCTTCGTTT 57.330 30.769 0.00 0.00 0.00 3.60
2320 2381 5.255397 TGGGTGAATGTTATCTTTCAGGT 57.745 39.130 3.11 0.00 38.03 4.00
2475 2539 2.554032 CAACGGTGAGCTTTCCATTTCT 59.446 45.455 0.00 0.00 0.00 2.52
2497 2563 5.544176 TCTCTGATCTGTATTTGGGGGTATC 59.456 44.000 0.00 0.00 0.00 2.24
2543 2611 2.489329 AGTTATGCATTGCACACCAGAC 59.511 45.455 14.66 6.62 43.04 3.51
2592 2660 0.110295 TACACCACACAATGCTGCCT 59.890 50.000 0.00 0.00 0.00 4.75
2600 2668 1.203052 CACAATGCTGCCTTGTAAGGG 59.797 52.381 20.24 7.11 46.56 3.95
2799 2867 0.514255 CGGATAGTGCATGCCATTCG 59.486 55.000 16.68 12.35 0.00 3.34
3046 3115 3.707793 CCTATAGCTCGGAAACAGACAC 58.292 50.000 0.00 0.00 0.00 3.67
3078 3147 1.686052 TGAGGTTTGCCACAATGAACC 59.314 47.619 0.00 0.00 41.40 3.62
3081 3150 1.335872 GGTTTGCCACAATGAACCGAG 60.336 52.381 0.00 0.00 33.02 4.63
3082 3151 1.336755 GTTTGCCACAATGAACCGAGT 59.663 47.619 0.00 0.00 0.00 4.18
3231 3302 9.897744 TTTTTGCTGTTGAATCAAACTAGATAG 57.102 29.630 0.00 0.00 30.45 2.08
3371 3442 5.290493 ACAAAGGGGAAATCAAAAGGAAC 57.710 39.130 0.00 0.00 0.00 3.62
3471 3542 4.932911 AAAGGCATTTCATCCCCAAATT 57.067 36.364 0.00 0.00 0.00 1.82
3514 3586 7.132805 TGAGAGATAGTTCTTCCCTAAATCCA 58.867 38.462 0.00 0.00 30.30 3.41
3840 3913 1.662686 AGGAGAGGGGTTTTGAGAGG 58.337 55.000 0.00 0.00 0.00 3.69
4028 4101 2.660670 AGATCTGGTCCTAGGTACGG 57.339 55.000 9.08 8.23 0.00 4.02
4083 4156 2.188817 GATAGGGATACAAGGGCCGAT 58.811 52.381 0.00 0.00 39.74 4.18
4103 4176 4.991056 CGATGTCCCATTTACTATGTCAGG 59.009 45.833 0.00 0.00 0.00 3.86
4165 4238 1.296715 CCGCTTGGCAGAGTAAGGT 59.703 57.895 0.00 0.00 0.00 3.50
4188 4261 2.034687 GTGGCTGCTGGATGGTGT 59.965 61.111 0.00 0.00 0.00 4.16
4490 4563 2.415168 CGCGTTATCACCATCTTGTTGT 59.585 45.455 0.00 0.00 0.00 3.32
4598 4671 4.081087 GGTTCACTATAGCCACCTTCTTCA 60.081 45.833 0.00 0.00 0.00 3.02
4723 4814 7.469260 GTTCACTTTCTGCTTACTGTGTTTTA 58.531 34.615 0.00 0.00 0.00 1.52
4724 4815 7.618502 TCACTTTCTGCTTACTGTGTTTTAA 57.381 32.000 0.00 0.00 0.00 1.52
4806 4899 2.358003 GCTGAGTTGCGAGCCACT 60.358 61.111 1.22 1.22 0.00 4.00
4807 4900 2.386660 GCTGAGTTGCGAGCCACTC 61.387 63.158 18.72 18.72 0.00 3.51
4808 4901 1.739562 CTGAGTTGCGAGCCACTCC 60.740 63.158 21.46 8.57 0.00 3.85
4809 4902 2.435059 GAGTTGCGAGCCACTCCC 60.435 66.667 15.78 0.00 0.00 4.30
4810 4903 2.925170 AGTTGCGAGCCACTCCCT 60.925 61.111 0.00 0.00 0.00 4.20
4811 4904 2.435059 GTTGCGAGCCACTCCCTC 60.435 66.667 0.00 0.00 0.00 4.30
4812 4905 3.706373 TTGCGAGCCACTCCCTCC 61.706 66.667 0.00 0.00 0.00 4.30
4814 4907 3.474570 GCGAGCCACTCCCTCCAT 61.475 66.667 0.00 0.00 0.00 3.41
4815 4908 3.036429 GCGAGCCACTCCCTCCATT 62.036 63.158 0.00 0.00 0.00 3.16
4816 4909 1.144936 CGAGCCACTCCCTCCATTC 59.855 63.158 0.00 0.00 0.00 2.67
4817 4910 1.529309 GAGCCACTCCCTCCATTCC 59.471 63.158 0.00 0.00 0.00 3.01
4818 4911 1.229951 AGCCACTCCCTCCATTCCA 60.230 57.895 0.00 0.00 0.00 3.53
4819 4912 0.846427 AGCCACTCCCTCCATTCCAA 60.846 55.000 0.00 0.00 0.00 3.53
4820 4913 0.039618 GCCACTCCCTCCATTCCAAA 59.960 55.000 0.00 0.00 0.00 3.28
4821 4914 1.549950 GCCACTCCCTCCATTCCAAAA 60.550 52.381 0.00 0.00 0.00 2.44
4822 4915 2.889756 GCCACTCCCTCCATTCCAAAAT 60.890 50.000 0.00 0.00 0.00 1.82
4823 4916 3.627237 GCCACTCCCTCCATTCCAAAATA 60.627 47.826 0.00 0.00 0.00 1.40
4824 4917 4.808042 CCACTCCCTCCATTCCAAAATAT 58.192 43.478 0.00 0.00 0.00 1.28
4825 4918 5.692781 GCCACTCCCTCCATTCCAAAATATA 60.693 44.000 0.00 0.00 0.00 0.86
4826 4919 6.006449 CCACTCCCTCCATTCCAAAATATAG 58.994 44.000 0.00 0.00 0.00 1.31
4827 4920 6.410853 CCACTCCCTCCATTCCAAAATATAGT 60.411 42.308 0.00 0.00 0.00 2.12
4828 4921 6.488006 CACTCCCTCCATTCCAAAATATAGTG 59.512 42.308 0.00 0.00 0.00 2.74
4829 4922 5.385198 TCCCTCCATTCCAAAATATAGTGC 58.615 41.667 0.00 0.00 0.00 4.40
4830 4923 4.216257 CCCTCCATTCCAAAATATAGTGCG 59.784 45.833 0.00 0.00 0.00 5.34
4831 4924 4.320494 CCTCCATTCCAAAATATAGTGCGC 60.320 45.833 0.00 0.00 0.00 6.09
4832 4925 3.568007 TCCATTCCAAAATATAGTGCGCC 59.432 43.478 4.18 0.00 0.00 6.53
4833 4926 3.305335 CCATTCCAAAATATAGTGCGCCC 60.305 47.826 4.18 0.00 0.00 6.13
4834 4927 1.588674 TCCAAAATATAGTGCGCCCG 58.411 50.000 4.18 0.00 0.00 6.13
4835 4928 0.040425 CCAAAATATAGTGCGCCCGC 60.040 55.000 4.18 5.60 42.35 6.13
4836 4929 0.384230 CAAAATATAGTGCGCCCGCG 60.384 55.000 4.18 4.36 45.51 6.46
4851 4944 4.430765 GCGCTTCCCGAGGTCGAA 62.431 66.667 0.00 0.00 43.02 3.71
4852 4945 2.506438 CGCTTCCCGAGGTCGAAC 60.506 66.667 0.00 0.00 43.02 3.95
4853 4946 2.971452 GCTTCCCGAGGTCGAACT 59.029 61.111 0.34 0.34 43.02 3.01
4854 4947 1.292541 GCTTCCCGAGGTCGAACTT 59.707 57.895 3.47 0.00 43.02 2.66
4855 4948 0.320508 GCTTCCCGAGGTCGAACTTT 60.321 55.000 3.47 0.00 43.02 2.66
4856 4949 1.429463 CTTCCCGAGGTCGAACTTTG 58.571 55.000 3.47 0.00 43.02 2.77
4857 4950 1.000506 CTTCCCGAGGTCGAACTTTGA 59.999 52.381 3.47 0.00 43.02 2.69
4858 4951 0.316204 TCCCGAGGTCGAACTTTGAC 59.684 55.000 3.47 0.86 43.02 3.18
4872 4965 9.453325 GTCGAACTTTGACCATAAATTTAACAA 57.547 29.630 1.21 4.62 0.00 2.83
4876 4969 9.804758 AACTTTGACCATAAATTTAACAAACGA 57.195 25.926 1.21 0.00 0.00 3.85
4877 4970 9.458374 ACTTTGACCATAAATTTAACAAACGAG 57.542 29.630 1.21 4.89 0.00 4.18
4878 4971 9.672086 CTTTGACCATAAATTTAACAAACGAGA 57.328 29.630 1.21 0.00 0.00 4.04
4879 4972 9.453325 TTTGACCATAAATTTAACAAACGAGAC 57.547 29.630 1.21 0.00 0.00 3.36
4880 4973 7.586747 TGACCATAAATTTAACAAACGAGACC 58.413 34.615 1.21 0.00 0.00 3.85
4881 4974 6.604930 ACCATAAATTTAACAAACGAGACCG 58.395 36.000 1.21 0.00 42.50 4.79
4882 4975 6.427547 ACCATAAATTTAACAAACGAGACCGA 59.572 34.615 1.21 0.00 39.50 4.69
4883 4976 6.739550 CCATAAATTTAACAAACGAGACCGAC 59.260 38.462 1.21 0.00 39.50 4.79
4884 4977 5.996669 AAATTTAACAAACGAGACCGACT 57.003 34.783 0.00 0.00 39.50 4.18
4885 4978 4.985044 ATTTAACAAACGAGACCGACTG 57.015 40.909 0.00 0.00 39.50 3.51
4886 4979 1.774639 TAACAAACGAGACCGACTGC 58.225 50.000 0.00 0.00 39.50 4.40
4887 4980 1.213094 AACAAACGAGACCGACTGCG 61.213 55.000 0.00 0.00 39.50 5.18
4897 4990 4.735132 CGACTGCGGCGGGAGAAA 62.735 66.667 19.55 0.00 35.29 2.52
4898 4991 2.358247 GACTGCGGCGGGAGAAAA 60.358 61.111 19.55 0.00 35.29 2.29
4899 4992 1.964373 GACTGCGGCGGGAGAAAAA 60.964 57.895 19.55 0.00 35.29 1.94
4900 4993 1.912371 GACTGCGGCGGGAGAAAAAG 61.912 60.000 19.55 0.00 35.29 2.27
4901 4994 1.966451 CTGCGGCGGGAGAAAAAGT 60.966 57.895 9.78 0.00 32.53 2.66
4902 4995 1.515521 CTGCGGCGGGAGAAAAAGTT 61.516 55.000 9.78 0.00 32.53 2.66
4903 4996 1.209383 GCGGCGGGAGAAAAAGTTC 59.791 57.895 9.78 0.00 0.00 3.01
4904 4997 1.873863 CGGCGGGAGAAAAAGTTCC 59.126 57.895 0.00 0.00 33.92 3.62
4905 4998 0.887387 CGGCGGGAGAAAAAGTTCCA 60.887 55.000 0.00 0.00 35.09 3.53
4906 4999 1.545841 GGCGGGAGAAAAAGTTCCAT 58.454 50.000 0.00 0.00 35.09 3.41
4907 5000 2.718563 GGCGGGAGAAAAAGTTCCATA 58.281 47.619 0.00 0.00 35.09 2.74
4908 5001 3.086282 GGCGGGAGAAAAAGTTCCATAA 58.914 45.455 0.00 0.00 35.09 1.90
4909 5002 3.699538 GGCGGGAGAAAAAGTTCCATAAT 59.300 43.478 0.00 0.00 35.09 1.28
4910 5003 4.159693 GGCGGGAGAAAAAGTTCCATAATT 59.840 41.667 0.00 0.00 35.09 1.40
4911 5004 5.358725 GGCGGGAGAAAAAGTTCCATAATTA 59.641 40.000 0.00 0.00 35.09 1.40
4912 5005 6.127563 GGCGGGAGAAAAAGTTCCATAATTAA 60.128 38.462 0.00 0.00 35.09 1.40
4913 5006 7.317390 GCGGGAGAAAAAGTTCCATAATTAAA 58.683 34.615 0.00 0.00 35.09 1.52
4914 5007 7.815549 GCGGGAGAAAAAGTTCCATAATTAAAA 59.184 33.333 0.00 0.00 35.09 1.52
4915 5008 9.699703 CGGGAGAAAAAGTTCCATAATTAAAAA 57.300 29.630 0.00 0.00 35.09 1.94
4924 5017 9.908152 AAGTTCCATAATTAAAAACTTCTTCCG 57.092 29.630 13.35 0.00 35.80 4.30
4925 5018 9.292195 AGTTCCATAATTAAAAACTTCTTCCGA 57.708 29.630 0.00 0.00 0.00 4.55
4926 5019 9.902196 GTTCCATAATTAAAAACTTCTTCCGAA 57.098 29.630 0.00 0.00 0.00 4.30
4935 5028 9.815936 TTAAAAACTTCTTCCGAATACGAATTC 57.184 29.630 0.00 0.00 42.66 2.17
4936 5029 7.429636 AAAACTTCTTCCGAATACGAATTCA 57.570 32.000 6.22 0.00 41.44 2.57
4937 5030 6.404712 AACTTCTTCCGAATACGAATTCAC 57.595 37.500 6.22 0.00 41.44 3.18
4938 5031 5.721232 ACTTCTTCCGAATACGAATTCACT 58.279 37.500 6.22 0.00 41.44 3.41
4939 5032 5.577164 ACTTCTTCCGAATACGAATTCACTG 59.423 40.000 6.22 0.00 41.44 3.66
4940 5033 5.319140 TCTTCCGAATACGAATTCACTGA 57.681 39.130 6.22 0.00 41.44 3.41
4941 5034 5.902681 TCTTCCGAATACGAATTCACTGAT 58.097 37.500 6.22 0.00 41.44 2.90
4942 5035 7.034685 TCTTCCGAATACGAATTCACTGATA 57.965 36.000 6.22 0.00 41.44 2.15
4943 5036 7.658261 TCTTCCGAATACGAATTCACTGATAT 58.342 34.615 6.22 0.00 41.44 1.63
4944 5037 8.789762 TCTTCCGAATACGAATTCACTGATATA 58.210 33.333 6.22 0.00 41.44 0.86
4945 5038 9.406828 CTTCCGAATACGAATTCACTGATATAA 57.593 33.333 6.22 0.00 41.44 0.98
4946 5039 8.738199 TCCGAATACGAATTCACTGATATAAC 57.262 34.615 6.22 0.00 41.44 1.89
4947 5040 8.573885 TCCGAATACGAATTCACTGATATAACT 58.426 33.333 6.22 0.00 41.44 2.24
4948 5041 9.193133 CCGAATACGAATTCACTGATATAACTT 57.807 33.333 6.22 0.00 41.44 2.66
4953 5046 8.268850 ACGAATTCACTGATATAACTTTTGCT 57.731 30.769 6.22 0.00 0.00 3.91
4954 5047 8.391106 ACGAATTCACTGATATAACTTTTGCTC 58.609 33.333 6.22 0.00 0.00 4.26
4955 5048 7.852945 CGAATTCACTGATATAACTTTTGCTCC 59.147 37.037 6.22 0.00 0.00 4.70
4956 5049 7.573968 ATTCACTGATATAACTTTTGCTCCC 57.426 36.000 0.00 0.00 0.00 4.30
4957 5050 5.116180 TCACTGATATAACTTTTGCTCCCG 58.884 41.667 0.00 0.00 0.00 5.14
4958 5051 3.877508 ACTGATATAACTTTTGCTCCCGC 59.122 43.478 0.00 0.00 0.00 6.13
4959 5052 3.211045 TGATATAACTTTTGCTCCCGCC 58.789 45.455 0.00 0.00 34.43 6.13
4960 5053 1.658994 TATAACTTTTGCTCCCGCCG 58.341 50.000 0.00 0.00 34.43 6.46
4961 5054 1.654023 ATAACTTTTGCTCCCGCCGC 61.654 55.000 0.00 0.00 34.43 6.53
4962 5055 4.887932 TATAACTTTTGCTCCCGCCGCA 62.888 50.000 0.00 0.00 35.22 5.69
4963 5056 3.669344 CTTTTGCTCCCGCCGCAA 61.669 61.111 0.00 0.00 44.83 4.85
4964 5057 2.988684 TTTTGCTCCCGCCGCAAT 60.989 55.556 5.33 0.00 45.67 3.56
4965 5058 2.872337 CTTTTGCTCCCGCCGCAATC 62.872 60.000 5.33 0.00 45.67 2.67
4977 5070 3.436001 CGCAATCGGTCTTGGTAGT 57.564 52.632 0.00 0.00 0.00 2.73
4978 5071 1.722011 CGCAATCGGTCTTGGTAGTT 58.278 50.000 0.00 0.00 0.00 2.24
4979 5072 2.883574 CGCAATCGGTCTTGGTAGTTA 58.116 47.619 0.00 0.00 0.00 2.24
4980 5073 3.255725 CGCAATCGGTCTTGGTAGTTAA 58.744 45.455 0.00 0.00 0.00 2.01
4981 5074 3.680937 CGCAATCGGTCTTGGTAGTTAAA 59.319 43.478 0.00 0.00 0.00 1.52
4982 5075 4.331717 CGCAATCGGTCTTGGTAGTTAAAT 59.668 41.667 0.00 0.00 0.00 1.40
4983 5076 5.163794 CGCAATCGGTCTTGGTAGTTAAATT 60.164 40.000 0.00 0.00 0.00 1.82
4984 5077 6.617879 GCAATCGGTCTTGGTAGTTAAATTT 58.382 36.000 0.00 0.00 0.00 1.82
4985 5078 7.413219 CGCAATCGGTCTTGGTAGTTAAATTTA 60.413 37.037 0.00 0.00 0.00 1.40
4986 5079 7.695201 GCAATCGGTCTTGGTAGTTAAATTTAC 59.305 37.037 0.00 0.00 0.00 2.01
4987 5080 6.949578 TCGGTCTTGGTAGTTAAATTTACG 57.050 37.500 0.00 0.00 0.00 3.18
4988 5081 5.868801 TCGGTCTTGGTAGTTAAATTTACGG 59.131 40.000 0.00 0.00 0.00 4.02
4989 5082 5.639082 CGGTCTTGGTAGTTAAATTTACGGT 59.361 40.000 0.00 0.00 0.00 4.83
4990 5083 6.183360 CGGTCTTGGTAGTTAAATTTACGGTC 60.183 42.308 0.00 0.00 0.00 4.79
4991 5084 6.650390 GGTCTTGGTAGTTAAATTTACGGTCA 59.350 38.462 0.00 0.00 0.00 4.02
4992 5085 7.173047 GGTCTTGGTAGTTAAATTTACGGTCAA 59.827 37.037 0.00 0.00 0.00 3.18
4993 5086 8.558700 GTCTTGGTAGTTAAATTTACGGTCAAA 58.441 33.333 0.00 0.00 0.00 2.69
4994 5087 8.776470 TCTTGGTAGTTAAATTTACGGTCAAAG 58.224 33.333 0.00 0.00 0.00 2.77
4995 5088 8.449251 TTGGTAGTTAAATTTACGGTCAAAGT 57.551 30.769 0.00 0.00 0.00 2.66
4996 5089 8.449251 TGGTAGTTAAATTTACGGTCAAAGTT 57.551 30.769 0.00 0.00 31.36 2.66
4997 5090 8.344098 TGGTAGTTAAATTTACGGTCAAAGTTG 58.656 33.333 0.00 0.00 29.44 3.16
4998 5091 8.558700 GGTAGTTAAATTTACGGTCAAAGTTGA 58.441 33.333 0.00 0.00 34.20 3.18
4999 5092 9.934190 GTAGTTAAATTTACGGTCAAAGTTGAA 57.066 29.630 0.00 0.00 39.21 2.69
5001 5094 7.646526 AGTTAAATTTACGGTCAAAGTTGAAGC 59.353 33.333 0.00 0.00 39.21 3.86
5002 5095 5.508200 AATTTACGGTCAAAGTTGAAGCA 57.492 34.783 0.00 0.00 39.21 3.91
5003 5096 3.955771 TTACGGTCAAAGTTGAAGCAC 57.044 42.857 0.00 0.00 39.21 4.40
5004 5097 0.655733 ACGGTCAAAGTTGAAGCACG 59.344 50.000 0.00 2.00 39.21 5.34
5005 5098 0.041312 CGGTCAAAGTTGAAGCACGG 60.041 55.000 0.00 0.00 39.21 4.94
5006 5099 0.310854 GGTCAAAGTTGAAGCACGGG 59.689 55.000 0.00 0.00 39.21 5.28
5007 5100 0.310854 GTCAAAGTTGAAGCACGGGG 59.689 55.000 0.00 0.00 39.21 5.73
5008 5101 0.181587 TCAAAGTTGAAGCACGGGGA 59.818 50.000 0.00 0.00 33.55 4.81
5009 5102 1.202879 TCAAAGTTGAAGCACGGGGAT 60.203 47.619 0.00 0.00 33.55 3.85
5010 5103 2.039216 TCAAAGTTGAAGCACGGGGATA 59.961 45.455 0.00 0.00 33.55 2.59
5011 5104 2.403252 AAGTTGAAGCACGGGGATAG 57.597 50.000 0.00 0.00 0.00 2.08
5012 5105 1.568504 AGTTGAAGCACGGGGATAGA 58.431 50.000 0.00 0.00 0.00 1.98
5013 5106 1.482593 AGTTGAAGCACGGGGATAGAG 59.517 52.381 0.00 0.00 0.00 2.43
5014 5107 0.830648 TTGAAGCACGGGGATAGAGG 59.169 55.000 0.00 0.00 0.00 3.69
5015 5108 0.032515 TGAAGCACGGGGATAGAGGA 60.033 55.000 0.00 0.00 0.00 3.71
5016 5109 1.120530 GAAGCACGGGGATAGAGGAA 58.879 55.000 0.00 0.00 0.00 3.36
5017 5110 1.069358 GAAGCACGGGGATAGAGGAAG 59.931 57.143 0.00 0.00 0.00 3.46
5018 5111 1.069935 GCACGGGGATAGAGGAAGC 59.930 63.158 0.00 0.00 0.00 3.86
5019 5112 1.686325 GCACGGGGATAGAGGAAGCA 61.686 60.000 0.00 0.00 0.00 3.91
5020 5113 0.105039 CACGGGGATAGAGGAAGCAC 59.895 60.000 0.00 0.00 0.00 4.40
5021 5114 0.032017 ACGGGGATAGAGGAAGCACT 60.032 55.000 0.00 0.00 0.00 4.40
5022 5115 1.217183 ACGGGGATAGAGGAAGCACTA 59.783 52.381 0.00 0.00 0.00 2.74
5023 5116 1.614413 CGGGGATAGAGGAAGCACTAC 59.386 57.143 0.00 0.00 0.00 2.73
5024 5117 2.679082 GGGGATAGAGGAAGCACTACA 58.321 52.381 0.00 0.00 0.00 2.74
5025 5118 3.243724 GGGGATAGAGGAAGCACTACAT 58.756 50.000 0.00 0.00 0.00 2.29
5026 5119 3.648545 GGGGATAGAGGAAGCACTACATT 59.351 47.826 0.00 0.00 0.00 2.71
5027 5120 4.503991 GGGGATAGAGGAAGCACTACATTG 60.504 50.000 0.00 0.00 0.00 2.82
5028 5121 4.101741 GGGATAGAGGAAGCACTACATTGT 59.898 45.833 0.00 0.00 0.00 2.71
5029 5122 5.053145 GGATAGAGGAAGCACTACATTGTG 58.947 45.833 0.00 0.00 40.62 3.33
5030 5123 3.340814 AGAGGAAGCACTACATTGTGG 57.659 47.619 0.00 0.00 38.31 4.17
5031 5124 2.906389 AGAGGAAGCACTACATTGTGGA 59.094 45.455 7.20 0.00 38.31 4.02
5032 5125 3.327757 AGAGGAAGCACTACATTGTGGAA 59.672 43.478 7.20 0.00 38.31 3.53
5033 5126 4.018960 AGAGGAAGCACTACATTGTGGAAT 60.019 41.667 7.20 0.00 38.31 3.01
5034 5127 4.012374 AGGAAGCACTACATTGTGGAATG 58.988 43.478 7.20 0.00 44.11 2.67
5035 5128 3.129287 GGAAGCACTACATTGTGGAATGG 59.871 47.826 7.20 0.00 43.00 3.16
5036 5129 3.719268 AGCACTACATTGTGGAATGGA 57.281 42.857 7.20 0.00 43.00 3.41
5040 5133 3.931907 CTACATTGTGGAATGGAGGGA 57.068 47.619 0.00 0.00 44.23 4.20
5041 5134 2.814805 ACATTGTGGAATGGAGGGAG 57.185 50.000 0.00 0.00 43.00 4.30
5085 5178 3.244630 TGTGACCTGGTTATGGTGGTTAC 60.245 47.826 0.00 0.00 38.86 2.50
5091 5184 4.007659 CTGGTTATGGTGGTTACTGGTTC 58.992 47.826 0.00 0.00 0.00 3.62
5219 5312 5.706916 ACACATTGATGTTGATGCTTCTTC 58.293 37.500 0.88 0.00 39.39 2.87
5355 5458 1.144691 TGTTGTGGATCCACCCTGAA 58.855 50.000 36.27 23.44 45.63 3.02
5425 5529 6.896883 ACCCTTCATAATTTCCCTGTAGTAC 58.103 40.000 0.00 0.00 0.00 2.73
5722 5828 1.528339 ACCCGAACGGTTTGTCCTT 59.472 52.632 12.23 0.00 45.36 3.36
5740 5846 2.358898 CCTTGTGTCAACTCTGTTTGGG 59.641 50.000 0.00 0.00 0.00 4.12
5743 5849 2.238646 TGTGTCAACTCTGTTTGGGTCT 59.761 45.455 0.00 0.00 0.00 3.85
5927 6038 6.691754 TTTCCTTTCCTTGCAAAAATTTCC 57.308 33.333 0.00 0.00 0.00 3.13
5931 6042 6.889177 TCCTTTCCTTGCAAAAATTTCCTTTT 59.111 30.769 0.00 0.00 38.73 2.27
5986 6106 9.745880 GATCGAACTAACTATTCTTGTTATGGA 57.254 33.333 0.00 0.00 30.73 3.41
5988 6108 9.932207 TCGAACTAACTATTCTTGTTATGGAAA 57.068 29.630 0.00 0.00 30.73 3.13
5995 6115 9.533831 AACTATTCTTGTTATGGAAATCAGGTT 57.466 29.630 0.00 0.00 0.00 3.50
6103 6223 3.689347 ACATCAAATTGCAGGTGAGCTA 58.311 40.909 0.00 0.00 34.99 3.32
6151 6271 7.966812 TGTAACAGACATAGCATGGAGATATT 58.033 34.615 0.00 0.00 31.20 1.28
6518 6638 6.660521 AGGTTGATGCATATGAAGTGAAGAAA 59.339 34.615 6.97 0.00 0.00 2.52
6849 6969 1.377987 GGGGCAAGACGGTATGCAA 60.378 57.895 17.02 0.00 44.32 4.08
6879 6999 6.036577 TCTTCTTTGCAGAGGTTTTTGTTT 57.963 33.333 4.15 0.00 0.00 2.83
6895 7015 7.748683 GGTTTTTGTTTGTTCACATTTTTCTCC 59.251 33.333 0.00 0.00 0.00 3.71
6931 7051 6.544038 TTGTTTCTGCCATGTATGATATCG 57.456 37.500 0.00 0.00 0.00 2.92
7144 7264 2.855180 CGCACTAAAATGGCTTCAGTG 58.145 47.619 0.00 0.00 39.65 3.66
7571 7691 9.862149 ATTCTCTAAAGTTCCCTTCTGTTTAAA 57.138 29.630 0.00 0.00 0.00 1.52
7572 7692 8.672823 TCTCTAAAGTTCCCTTCTGTTTAAAC 57.327 34.615 11.54 11.54 0.00 2.01
7738 7868 2.167487 GGTCTGTGATGGAGGTCTCTTC 59.833 54.545 0.00 0.00 0.00 2.87
7739 7869 2.167487 GTCTGTGATGGAGGTCTCTTCC 59.833 54.545 0.00 0.00 0.00 3.46
7740 7870 2.043664 TCTGTGATGGAGGTCTCTTCCT 59.956 50.000 0.00 0.00 40.97 3.36
8047 8219 5.067954 GGTAGGAAGTTTTCTAGTTTGGCA 58.932 41.667 0.00 0.00 0.00 4.92
8092 8264 8.983702 TGAAATGAATCTCATATGTTCCATCA 57.016 30.769 1.90 3.47 35.76 3.07
8117 8289 1.456287 GAGTTGGGGAGTTGTGGCT 59.544 57.895 0.00 0.00 0.00 4.75
8129 8301 2.909965 GTGGCTGCCGGTGGAAAA 60.910 61.111 14.98 0.00 0.00 2.29
8146 8319 2.320745 AAACGAGTCCGACTTTGGTT 57.679 45.000 1.71 5.30 39.50 3.67
8147 8320 1.578583 AACGAGTCCGACTTTGGTTG 58.421 50.000 1.71 0.00 39.50 3.77
8247 8432 3.118371 GGAAACCGTTGATCTGGGTATCT 60.118 47.826 3.82 0.00 32.68 1.98
8258 8443 3.764218 TCTGGGTATCTTAGATCGGACC 58.236 50.000 0.00 0.81 0.00 4.46
8286 8471 4.400884 CCTTGATCTGGGTATCCTAGATCG 59.599 50.000 25.58 17.20 43.17 3.69
8290 8475 2.714793 TCTGGGTATCCTAGATCGGACA 59.285 50.000 0.00 0.00 35.52 4.02
8303 8488 4.904466 GGACAACGACGGTGCTAT 57.096 55.556 13.97 0.00 0.00 2.97
8304 8489 3.132863 GGACAACGACGGTGCTATT 57.867 52.632 13.97 0.00 0.00 1.73
8305 8490 0.997196 GGACAACGACGGTGCTATTC 59.003 55.000 13.97 2.44 0.00 1.75
8306 8491 0.997196 GACAACGACGGTGCTATTCC 59.003 55.000 13.97 0.00 0.00 3.01
8307 8492 0.606604 ACAACGACGGTGCTATTCCT 59.393 50.000 13.97 0.00 0.00 3.36
8308 8493 1.001633 ACAACGACGGTGCTATTCCTT 59.998 47.619 13.97 0.00 0.00 3.36
8309 8494 1.393539 CAACGACGGTGCTATTCCTTG 59.606 52.381 0.00 0.00 0.00 3.61
8310 8495 0.892755 ACGACGGTGCTATTCCTTGA 59.107 50.000 0.00 0.00 0.00 3.02
8311 8496 1.480954 ACGACGGTGCTATTCCTTGAT 59.519 47.619 0.00 0.00 0.00 2.57
8312 8497 2.128035 CGACGGTGCTATTCCTTGATC 58.872 52.381 0.00 0.00 0.00 2.92
8313 8498 2.223829 CGACGGTGCTATTCCTTGATCT 60.224 50.000 0.00 0.00 0.00 2.75
8314 8499 3.126831 GACGGTGCTATTCCTTGATCTG 58.873 50.000 0.00 0.00 0.00 2.90
8315 8500 2.158900 ACGGTGCTATTCCTTGATCTGG 60.159 50.000 0.00 0.00 0.00 3.86
8316 8501 2.808202 CGGTGCTATTCCTTGATCTGGG 60.808 54.545 0.00 0.00 0.00 4.45
8317 8502 2.173569 GGTGCTATTCCTTGATCTGGGT 59.826 50.000 0.00 0.00 0.00 4.51
8318 8503 3.391296 GGTGCTATTCCTTGATCTGGGTA 59.609 47.826 0.00 0.00 0.00 3.69
8319 8504 4.042187 GGTGCTATTCCTTGATCTGGGTAT 59.958 45.833 0.00 0.00 0.00 2.73
8320 8505 5.241662 GTGCTATTCCTTGATCTGGGTATC 58.758 45.833 0.00 0.00 0.00 2.24
8321 8506 4.287067 TGCTATTCCTTGATCTGGGTATCC 59.713 45.833 0.00 0.00 0.00 2.59
8322 8507 4.534103 GCTATTCCTTGATCTGGGTATCCT 59.466 45.833 0.00 0.00 0.00 3.24
8323 8508 5.721960 GCTATTCCTTGATCTGGGTATCCTA 59.278 44.000 0.00 0.00 0.00 2.94
8324 8509 6.127196 GCTATTCCTTGATCTGGGTATCCTAG 60.127 46.154 0.00 0.00 0.00 3.02
8325 8510 5.418692 TTCCTTGATCTGGGTATCCTAGA 57.581 43.478 4.46 4.46 0.00 2.43
8326 8511 5.623551 TCCTTGATCTGGGTATCCTAGAT 57.376 43.478 13.11 13.11 35.28 1.98
8327 8512 5.584913 TCCTTGATCTGGGTATCCTAGATC 58.415 45.833 25.08 25.08 42.05 2.75
8328 8513 4.400884 CCTTGATCTGGGTATCCTAGATCG 59.599 50.000 25.58 17.20 43.17 3.69
8329 8514 4.659529 TGATCTGGGTATCCTAGATCGT 57.340 45.455 25.58 5.81 43.17 3.73
8330 8515 5.774102 TGATCTGGGTATCCTAGATCGTA 57.226 43.478 25.58 14.03 43.17 3.43
8331 8516 5.498393 TGATCTGGGTATCCTAGATCGTAC 58.502 45.833 25.58 11.92 43.17 3.67
8332 8517 4.987963 TCTGGGTATCCTAGATCGTACA 57.012 45.455 0.00 0.00 0.00 2.90
8333 8518 5.314718 TCTGGGTATCCTAGATCGTACAA 57.685 43.478 0.00 0.00 0.00 2.41
8334 8519 5.888901 TCTGGGTATCCTAGATCGTACAAT 58.111 41.667 0.00 0.00 0.00 2.71
8335 8520 5.710567 TCTGGGTATCCTAGATCGTACAATG 59.289 44.000 0.00 0.00 0.00 2.82
8336 8521 5.637127 TGGGTATCCTAGATCGTACAATGA 58.363 41.667 0.00 0.00 0.00 2.57
8337 8522 5.475909 TGGGTATCCTAGATCGTACAATGAC 59.524 44.000 0.00 0.00 0.00 3.06
8346 8531 3.513680 TCGTACAATGACGGTGCTATT 57.486 42.857 0.00 0.00 43.12 1.73
8347 8532 3.441163 TCGTACAATGACGGTGCTATTC 58.559 45.455 0.00 0.00 43.12 1.75
8412 8597 4.808414 TGTTGGAGTAGTCAAGAGATGG 57.192 45.455 0.00 0.00 0.00 3.51
8422 8607 2.351244 AAGAGATGGAGCGGCGTGA 61.351 57.895 9.37 0.00 0.00 4.35
8429 8614 1.589196 GGAGCGGCGTGACATCTAC 60.589 63.158 9.37 0.00 0.00 2.59
8454 8639 1.152830 AATGTTGGCGGGTCTTGGT 59.847 52.632 0.00 0.00 0.00 3.67
8465 8650 1.604593 GTCTTGGTGGCATGGTGCT 60.605 57.895 1.64 0.00 44.28 4.40
8482 8667 4.560743 TGCACAGTCTTGGCGGCA 62.561 61.111 7.97 7.97 0.00 5.69
8499 8684 1.890979 CAGATGCGTCTGGATGGGC 60.891 63.158 25.59 0.00 46.56 5.36
8536 8721 1.449778 TTGTTTGGCGTCGTGGTGA 60.450 52.632 0.00 0.00 0.00 4.02
8538 8723 2.589442 TTTGGCGTCGTGGTGACC 60.589 61.111 0.00 0.00 45.23 4.02
8646 8833 3.133365 GCCCCAGACCCGGCATTAT 62.133 63.158 0.00 0.00 45.01 1.28
8649 8836 1.531748 CCAGACCCGGCATTATGGT 59.468 57.895 0.00 0.00 34.33 3.55
8650 8837 0.106719 CCAGACCCGGCATTATGGTT 60.107 55.000 0.00 0.00 30.97 3.67
8651 8838 1.308998 CAGACCCGGCATTATGGTTC 58.691 55.000 0.00 0.00 30.97 3.62
8652 8839 0.916086 AGACCCGGCATTATGGTTCA 59.084 50.000 0.00 0.00 30.97 3.18
8653 8840 1.021968 GACCCGGCATTATGGTTCAC 58.978 55.000 0.00 0.00 30.97 3.18
8654 8841 0.395173 ACCCGGCATTATGGTTCACC 60.395 55.000 0.00 0.00 0.00 4.02
8655 8842 0.106719 CCCGGCATTATGGTTCACCT 60.107 55.000 0.00 0.00 36.82 4.00
8656 8843 1.308998 CCGGCATTATGGTTCACCTC 58.691 55.000 0.00 0.00 36.82 3.85
8657 8844 1.134098 CCGGCATTATGGTTCACCTCT 60.134 52.381 0.00 0.00 36.82 3.69
8658 8845 2.643551 CGGCATTATGGTTCACCTCTT 58.356 47.619 0.00 0.00 36.82 2.85
8659 8846 2.355756 CGGCATTATGGTTCACCTCTTG 59.644 50.000 0.00 0.00 36.82 3.02
8660 8847 2.099756 GGCATTATGGTTCACCTCTTGC 59.900 50.000 0.00 2.07 36.82 4.01
8661 8848 2.099756 GCATTATGGTTCACCTCTTGCC 59.900 50.000 0.00 0.00 36.82 4.52
8662 8849 3.624777 CATTATGGTTCACCTCTTGCCT 58.375 45.455 0.00 0.00 36.82 4.75
8663 8850 3.350219 TTATGGTTCACCTCTTGCCTC 57.650 47.619 0.00 0.00 36.82 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 0.038709 CTCGCCCGGAAGATCATCTC 60.039 60.000 0.73 0.00 0.00 2.75
64 65 3.637273 GAAGGTGCCGGTGGACCT 61.637 66.667 14.26 14.26 44.94 3.85
124 125 0.541998 TCTCCTTCCTTCTGTCGCCA 60.542 55.000 0.00 0.00 0.00 5.69
131 132 0.252927 CCCACCCTCTCCTTCCTTCT 60.253 60.000 0.00 0.00 0.00 2.85
135 136 0.252742 TTCTCCCACCCTCTCCTTCC 60.253 60.000 0.00 0.00 0.00 3.46
157 158 2.291217 GCTCTTCCTCCAATTCCCACTT 60.291 50.000 0.00 0.00 0.00 3.16
162 163 1.098129 GCCGCTCTTCCTCCAATTCC 61.098 60.000 0.00 0.00 0.00 3.01
196 197 0.729690 GCGCCAAAATCCTCACTCTC 59.270 55.000 0.00 0.00 0.00 3.20
197 198 1.021390 CGCGCCAAAATCCTCACTCT 61.021 55.000 0.00 0.00 0.00 3.24
198 199 1.019278 TCGCGCCAAAATCCTCACTC 61.019 55.000 0.00 0.00 0.00 3.51
199 200 0.605319 TTCGCGCCAAAATCCTCACT 60.605 50.000 0.00 0.00 0.00 3.41
200 201 0.239879 TTTCGCGCCAAAATCCTCAC 59.760 50.000 0.00 0.00 0.00 3.51
201 202 0.955178 TTTTCGCGCCAAAATCCTCA 59.045 45.000 8.92 0.00 0.00 3.86
202 203 1.335506 TGTTTTCGCGCCAAAATCCTC 60.336 47.619 15.85 4.16 0.00 3.71
203 204 0.671251 TGTTTTCGCGCCAAAATCCT 59.329 45.000 15.85 0.00 0.00 3.24
207 209 1.142778 GCACTGTTTTCGCGCCAAAA 61.143 50.000 8.92 8.92 0.00 2.44
217 219 1.959085 CAGCATCCCGCACTGTTTT 59.041 52.632 0.00 0.00 46.13 2.43
281 283 0.250770 AAACGTTGCTCTTCTCCCCC 60.251 55.000 0.00 0.00 0.00 5.40
282 284 1.157585 GAAACGTTGCTCTTCTCCCC 58.842 55.000 0.00 0.00 0.00 4.81
283 285 1.531578 GTGAAACGTTGCTCTTCTCCC 59.468 52.381 8.00 0.00 0.00 4.30
284 286 2.210116 TGTGAAACGTTGCTCTTCTCC 58.790 47.619 8.00 0.00 42.39 3.71
285 287 3.248602 ACATGTGAAACGTTGCTCTTCTC 59.751 43.478 8.00 0.14 42.39 2.87
286 288 3.002656 CACATGTGAAACGTTGCTCTTCT 59.997 43.478 21.64 0.00 42.39 2.85
287 289 3.242739 ACACATGTGAAACGTTGCTCTTC 60.243 43.478 31.94 0.00 42.39 2.87
288 290 2.682856 ACACATGTGAAACGTTGCTCTT 59.317 40.909 31.94 1.65 42.39 2.85
289 291 2.288666 ACACATGTGAAACGTTGCTCT 58.711 42.857 31.94 1.87 42.39 4.09
290 292 2.755836 ACACATGTGAAACGTTGCTC 57.244 45.000 31.94 4.44 42.39 4.26
302 304 0.250295 CGTTGGGAGTCCACACATGT 60.250 55.000 12.30 0.00 43.94 3.21
308 310 0.942252 GACAAACGTTGGGAGTCCAC 59.058 55.000 12.30 0.00 43.94 4.02
329 331 1.064357 GTGTTTTCTTCCGCAAACCGA 59.936 47.619 0.00 0.00 40.02 4.69
361 363 2.131183 GGTCTTGTATCGATCTGCAGC 58.869 52.381 9.47 0.00 0.00 5.25
369 371 0.457166 CCAACGCGGTCTTGTATCGA 60.457 55.000 12.47 0.00 0.00 3.59
392 394 3.652057 AATCATCTGGACCACGGAAAT 57.348 42.857 0.00 0.00 38.16 2.17
393 395 3.677700 CGTAATCATCTGGACCACGGAAA 60.678 47.826 0.00 0.00 38.16 3.13
405 407 2.741878 CGCAAACCTCCCGTAATCATCT 60.742 50.000 0.00 0.00 0.00 2.90
408 410 0.322322 ACGCAAACCTCCCGTAATCA 59.678 50.000 0.00 0.00 32.86 2.57
432 434 1.924939 TGGCTCAGGGCATCTCCAA 60.925 57.895 0.00 0.00 43.20 3.53
456 458 3.443681 AGTCGAATACAAAAATGGCAGGG 59.556 43.478 0.00 0.00 0.00 4.45
458 460 7.754924 ACAATAAGTCGAATACAAAAATGGCAG 59.245 33.333 0.00 0.00 0.00 4.85
471 473 9.053410 AGGCATTCCTAGGACAATAAGTCGAAT 62.053 40.741 12.22 0.00 44.17 3.34
472 474 7.818730 AGGCATTCCTAGGACAATAAGTCGAA 61.819 42.308 12.22 0.00 44.17 3.71
516 518 6.591750 AAGAGTAAACTCCGATTCAGAGAA 57.408 37.500 6.50 0.00 43.88 2.87
590 592 3.916392 AAGGTCCTGCGCGTCGAAG 62.916 63.158 8.43 0.25 31.28 3.79
591 593 3.909258 GAAGGTCCTGCGCGTCGAA 62.909 63.158 8.43 0.00 0.00 3.71
592 594 4.415332 GAAGGTCCTGCGCGTCGA 62.415 66.667 8.43 0.00 0.00 4.20
600 602 2.183679 AGTTGAGGCTAGAAGGTCCTG 58.816 52.381 0.00 0.00 0.00 3.86
611 613 4.097418 ACATGTCCTTAGTAGTTGAGGCT 58.903 43.478 0.00 0.00 0.00 4.58
612 614 4.473477 ACATGTCCTTAGTAGTTGAGGC 57.527 45.455 0.00 0.00 0.00 4.70
627 629 9.547753 ACTATCTTATCAACCATTGTACATGTC 57.452 33.333 0.00 0.00 0.00 3.06
628 630 9.547753 GACTATCTTATCAACCATTGTACATGT 57.452 33.333 2.69 2.69 0.00 3.21
741 745 7.065803 ACAATATGTCTCATCGTGTTTTTAGGG 59.934 37.037 0.00 0.00 0.00 3.53
751 755 7.041721 TCTTTTAGCACAATATGTCTCATCGT 58.958 34.615 0.00 0.00 0.00 3.73
766 770 9.468532 AAAAGACAAGAAATGATCTTTTAGCAC 57.531 29.630 6.57 0.00 46.39 4.40
780 784 9.838339 AGAGAACTCATAAGAAAAGACAAGAAA 57.162 29.630 4.64 0.00 0.00 2.52
781 785 9.482627 GAGAGAACTCATAAGAAAAGACAAGAA 57.517 33.333 4.64 0.00 42.21 2.52
782 786 8.642432 TGAGAGAACTCATAAGAAAAGACAAGA 58.358 33.333 4.64 0.00 46.55 3.02
783 787 8.824159 TGAGAGAACTCATAAGAAAAGACAAG 57.176 34.615 4.64 0.00 46.55 3.16
798 802 4.527509 TGATGTGGAGTTGAGAGAACTC 57.472 45.455 6.08 6.08 44.38 3.01
799 803 5.495926 AATGATGTGGAGTTGAGAGAACT 57.504 39.130 0.00 0.00 0.00 3.01
800 804 7.981789 TGTATAATGATGTGGAGTTGAGAGAAC 59.018 37.037 0.00 0.00 0.00 3.01
801 805 8.078060 TGTATAATGATGTGGAGTTGAGAGAA 57.922 34.615 0.00 0.00 0.00 2.87
802 806 7.660030 TGTATAATGATGTGGAGTTGAGAGA 57.340 36.000 0.00 0.00 0.00 3.10
803 807 8.899427 AATGTATAATGATGTGGAGTTGAGAG 57.101 34.615 0.00 0.00 0.00 3.20
811 815 9.394767 GGCATGTATAATGTATAATGATGTGGA 57.605 33.333 0.00 0.00 0.00 4.02
812 816 9.399797 AGGCATGTATAATGTATAATGATGTGG 57.600 33.333 0.00 0.00 0.00 4.17
823 827 9.674068 TCTGTTGTTTTAGGCATGTATAATGTA 57.326 29.630 0.00 0.00 0.00 2.29
824 828 8.574251 TCTGTTGTTTTAGGCATGTATAATGT 57.426 30.769 0.00 0.00 0.00 2.71
825 829 9.853555 TTTCTGTTGTTTTAGGCATGTATAATG 57.146 29.630 0.00 0.00 0.00 1.90
827 831 9.685828 GTTTTCTGTTGTTTTAGGCATGTATAA 57.314 29.630 0.00 0.00 0.00 0.98
828 832 9.073475 AGTTTTCTGTTGTTTTAGGCATGTATA 57.927 29.630 0.00 0.00 0.00 1.47
829 833 7.951591 AGTTTTCTGTTGTTTTAGGCATGTAT 58.048 30.769 0.00 0.00 0.00 2.29
830 834 7.341445 AGTTTTCTGTTGTTTTAGGCATGTA 57.659 32.000 0.00 0.00 0.00 2.29
831 835 6.220726 AGTTTTCTGTTGTTTTAGGCATGT 57.779 33.333 0.00 0.00 0.00 3.21
832 836 7.538303 AAAGTTTTCTGTTGTTTTAGGCATG 57.462 32.000 0.00 0.00 0.00 4.06
833 837 8.560355 AAAAAGTTTTCTGTTGTTTTAGGCAT 57.440 26.923 0.32 0.00 0.00 4.40
834 838 7.971183 AAAAAGTTTTCTGTTGTTTTAGGCA 57.029 28.000 0.32 0.00 0.00 4.75
835 839 8.600625 CCTAAAAAGTTTTCTGTTGTTTTAGGC 58.399 33.333 15.86 0.00 42.78 3.93
836 840 9.093970 CCCTAAAAAGTTTTCTGTTGTTTTAGG 57.906 33.333 19.10 19.10 45.14 2.69
837 841 8.600625 GCCCTAAAAAGTTTTCTGTTGTTTTAG 58.399 33.333 0.32 0.00 36.85 1.85
838 842 8.315482 AGCCCTAAAAAGTTTTCTGTTGTTTTA 58.685 29.630 0.32 0.00 0.00 1.52
839 843 7.119116 CAGCCCTAAAAAGTTTTCTGTTGTTTT 59.881 33.333 0.32 0.00 0.00 2.43
840 844 6.593770 CAGCCCTAAAAAGTTTTCTGTTGTTT 59.406 34.615 0.32 0.00 0.00 2.83
841 845 6.106003 CAGCCCTAAAAAGTTTTCTGTTGTT 58.894 36.000 0.32 0.00 0.00 2.83
842 846 5.186992 ACAGCCCTAAAAAGTTTTCTGTTGT 59.813 36.000 11.76 7.84 31.51 3.32
843 847 5.660460 ACAGCCCTAAAAAGTTTTCTGTTG 58.340 37.500 11.76 7.37 31.51 3.33
844 848 5.656859 AGACAGCCCTAAAAAGTTTTCTGTT 59.343 36.000 16.38 7.82 34.02 3.16
845 849 5.067805 CAGACAGCCCTAAAAAGTTTTCTGT 59.932 40.000 15.63 15.63 35.51 3.41
846 850 5.299279 TCAGACAGCCCTAAAAAGTTTTCTG 59.701 40.000 0.32 6.85 0.00 3.02
847 851 5.445964 TCAGACAGCCCTAAAAAGTTTTCT 58.554 37.500 0.32 0.00 0.00 2.52
848 852 5.767816 TCAGACAGCCCTAAAAAGTTTTC 57.232 39.130 0.32 0.00 0.00 2.29
849 853 6.538945 TTTCAGACAGCCCTAAAAAGTTTT 57.461 33.333 0.00 0.00 0.00 2.43
850 854 6.731292 ATTTCAGACAGCCCTAAAAAGTTT 57.269 33.333 0.00 0.00 0.00 2.66
851 855 6.462909 CCAATTTCAGACAGCCCTAAAAAGTT 60.463 38.462 0.00 0.00 0.00 2.66
852 856 5.011023 CCAATTTCAGACAGCCCTAAAAAGT 59.989 40.000 0.00 0.00 0.00 2.66
853 857 5.473039 CCAATTTCAGACAGCCCTAAAAAG 58.527 41.667 0.00 0.00 0.00 2.27
854 858 4.262420 GCCAATTTCAGACAGCCCTAAAAA 60.262 41.667 0.00 0.00 0.00 1.94
855 859 3.258123 GCCAATTTCAGACAGCCCTAAAA 59.742 43.478 0.00 0.00 0.00 1.52
856 860 2.825532 GCCAATTTCAGACAGCCCTAAA 59.174 45.455 0.00 0.00 0.00 1.85
857 861 2.446435 GCCAATTTCAGACAGCCCTAA 58.554 47.619 0.00 0.00 0.00 2.69
858 862 1.340991 GGCCAATTTCAGACAGCCCTA 60.341 52.381 0.00 0.00 34.23 3.53
859 863 0.613012 GGCCAATTTCAGACAGCCCT 60.613 55.000 0.00 0.00 34.23 5.19
860 864 1.893062 GGCCAATTTCAGACAGCCC 59.107 57.895 0.00 0.00 34.23 5.19
861 865 1.244019 ACGGCCAATTTCAGACAGCC 61.244 55.000 2.24 0.00 37.03 4.85
862 866 1.448985 TACGGCCAATTTCAGACAGC 58.551 50.000 2.24 0.00 0.00 4.40
863 867 4.497473 TTTTACGGCCAATTTCAGACAG 57.503 40.909 2.24 0.00 0.00 3.51
864 868 4.920640 TTTTTACGGCCAATTTCAGACA 57.079 36.364 2.24 0.00 0.00 3.41
893 897 1.908483 GAGGAGGAGGGATTTGCGT 59.092 57.895 0.00 0.00 0.00 5.24
894 898 1.227380 CGAGGAGGAGGGATTTGCG 60.227 63.158 0.00 0.00 0.00 4.85
900 904 0.563173 ATGGATTCGAGGAGGAGGGA 59.437 55.000 0.00 0.00 0.00 4.20
1687 1696 3.210528 GAGCGACGGACCGGATCT 61.211 66.667 20.00 11.15 0.00 2.75
2258 2285 8.082334 AGAAGAAGAAGAAGAAGATTCAAACG 57.918 34.615 0.00 0.00 0.00 3.60
2289 2350 2.673775 ACATTCACCCATTCACCACA 57.326 45.000 0.00 0.00 0.00 4.17
2320 2381 9.405587 CAGAATACGGAAAATTTAGAAAAAGCA 57.594 29.630 0.00 0.00 0.00 3.91
2475 2539 5.071788 GTGATACCCCCAAATACAGATCAGA 59.928 44.000 0.00 0.00 0.00 3.27
2497 2563 2.923655 CACTGCATAGTACGTCCAAGTG 59.076 50.000 0.00 6.64 34.74 3.16
2543 2611 3.679083 GCTAAACTGTACTACCCTGCAGG 60.679 52.174 26.87 26.87 43.78 4.85
2592 2660 3.130516 CGACTATCAGTCTGCCCTTACAA 59.869 47.826 4.91 0.00 42.92 2.41
2704 2772 8.028938 ACATTATGTCAATTAACCAAACAGAGC 58.971 33.333 0.00 0.00 0.00 4.09
2799 2867 4.965119 AACTTCAGAAGGTGTTCACAAC 57.035 40.909 14.90 0.00 34.82 3.32
2837 2905 5.181748 GCTTGAATTCTGTAGGACTGTCAT 58.818 41.667 10.38 5.00 0.00 3.06
3046 3115 5.178067 GTGGCAAACCTCATTTTCTTCATTG 59.822 40.000 0.00 0.00 36.63 2.82
3078 3147 4.866486 TGATGTCATCTCAAATCACACTCG 59.134 41.667 13.90 0.00 0.00 4.18
3081 3150 7.783090 ATACTGATGTCATCTCAAATCACAC 57.217 36.000 13.90 0.00 0.00 3.82
3082 3151 7.654923 GCTATACTGATGTCATCTCAAATCACA 59.345 37.037 13.90 0.00 0.00 3.58
3231 3302 6.592870 AGGCAACAGTCTTATAGAATTACCC 58.407 40.000 0.00 0.00 41.41 3.69
3371 3442 3.002656 GTGAATCTTGTCCTGTGTGTGTG 59.997 47.826 0.00 0.00 0.00 3.82
3471 3542 2.041620 CTCAAAACCCCCATCTCCTTGA 59.958 50.000 0.00 0.00 0.00 3.02
3514 3586 7.073725 TCCATAATATAAGCCCTCCAACTCTTT 59.926 37.037 0.00 0.00 0.00 2.52
3840 3913 6.096564 TCTCTTCGGATTTAGGGAAGAACTAC 59.903 42.308 4.51 0.00 43.83 2.73
4028 4101 6.295518 CCCCTTCGTCCCTTACCTATATAAAC 60.296 46.154 0.00 0.00 0.00 2.01
4165 4238 1.304630 ATCCAGCAGCCACATTGCA 60.305 52.632 0.00 0.00 43.92 4.08
4188 4261 2.310779 AGACCCTAGACAGAAGCACA 57.689 50.000 0.00 0.00 0.00 4.57
4490 4563 5.355630 GTGACAGCTAGATAGACAAGACTCA 59.644 44.000 0.00 0.00 0.00 3.41
4598 4671 3.894427 AGACAGCGAGATATGGAGAACAT 59.106 43.478 0.00 0.00 43.68 2.71
4723 4814 1.001378 GCAACGAGTGAACAGCCAATT 60.001 47.619 0.00 0.00 0.00 2.32
4724 4815 0.593128 GCAACGAGTGAACAGCCAAT 59.407 50.000 0.00 0.00 0.00 3.16
4805 4898 5.474876 GCACTATATTTTGGAATGGAGGGAG 59.525 44.000 0.00 0.00 0.00 4.30
4806 4899 5.385198 GCACTATATTTTGGAATGGAGGGA 58.615 41.667 0.00 0.00 0.00 4.20
4807 4900 4.216257 CGCACTATATTTTGGAATGGAGGG 59.784 45.833 0.00 0.00 0.00 4.30
4808 4901 4.320494 GCGCACTATATTTTGGAATGGAGG 60.320 45.833 0.30 0.00 0.00 4.30
4809 4902 4.320494 GGCGCACTATATTTTGGAATGGAG 60.320 45.833 10.83 0.00 0.00 3.86
4810 4903 3.568007 GGCGCACTATATTTTGGAATGGA 59.432 43.478 10.83 0.00 0.00 3.41
4811 4904 3.305335 GGGCGCACTATATTTTGGAATGG 60.305 47.826 10.83 0.00 0.00 3.16
4812 4905 3.609175 CGGGCGCACTATATTTTGGAATG 60.609 47.826 8.62 0.00 0.00 2.67
4813 4906 2.552315 CGGGCGCACTATATTTTGGAAT 59.448 45.455 8.62 0.00 0.00 3.01
4814 4907 1.944024 CGGGCGCACTATATTTTGGAA 59.056 47.619 8.62 0.00 0.00 3.53
4815 4908 1.588674 CGGGCGCACTATATTTTGGA 58.411 50.000 8.62 0.00 0.00 3.53
4816 4909 0.040425 GCGGGCGCACTATATTTTGG 60.040 55.000 8.62 0.00 41.49 3.28
4817 4910 0.384230 CGCGGGCGCACTATATTTTG 60.384 55.000 8.62 0.00 42.06 2.44
4818 4911 1.938861 CGCGGGCGCACTATATTTT 59.061 52.632 8.62 0.00 42.06 1.82
4819 4912 3.637714 CGCGGGCGCACTATATTT 58.362 55.556 8.62 0.00 42.06 1.40
4834 4927 4.430765 TTCGACCTCGGGAAGCGC 62.431 66.667 0.00 0.00 40.29 5.92
4835 4928 2.488087 AAGTTCGACCTCGGGAAGCG 62.488 60.000 0.00 0.00 40.29 4.68
4836 4929 0.320508 AAAGTTCGACCTCGGGAAGC 60.321 55.000 0.00 0.00 40.29 3.86
4837 4930 1.000506 TCAAAGTTCGACCTCGGGAAG 59.999 52.381 0.00 0.00 40.29 3.46
4838 4931 1.042229 TCAAAGTTCGACCTCGGGAA 58.958 50.000 0.00 0.00 40.29 3.97
4839 4932 0.316204 GTCAAAGTTCGACCTCGGGA 59.684 55.000 0.00 0.00 40.29 5.14
4840 4933 2.823628 GTCAAAGTTCGACCTCGGG 58.176 57.895 0.00 0.00 40.29 5.14
4846 4939 9.453325 TTGTTAAATTTATGGTCAAAGTTCGAC 57.547 29.630 0.00 0.00 29.44 4.20
4850 4943 9.804758 TCGTTTGTTAAATTTATGGTCAAAGTT 57.195 25.926 0.00 0.00 31.36 2.66
4851 4944 9.458374 CTCGTTTGTTAAATTTATGGTCAAAGT 57.542 29.630 0.00 0.00 0.00 2.66
4852 4945 9.672086 TCTCGTTTGTTAAATTTATGGTCAAAG 57.328 29.630 0.00 4.73 0.00 2.77
4853 4946 9.453325 GTCTCGTTTGTTAAATTTATGGTCAAA 57.547 29.630 0.00 6.53 0.00 2.69
4854 4947 8.077386 GGTCTCGTTTGTTAAATTTATGGTCAA 58.923 33.333 0.00 1.18 0.00 3.18
4855 4948 7.571613 CGGTCTCGTTTGTTAAATTTATGGTCA 60.572 37.037 0.00 0.00 0.00 4.02
4856 4949 6.739550 CGGTCTCGTTTGTTAAATTTATGGTC 59.260 38.462 0.00 0.00 0.00 4.02
4857 4950 6.427547 TCGGTCTCGTTTGTTAAATTTATGGT 59.572 34.615 0.00 0.00 37.69 3.55
4858 4951 6.739550 GTCGGTCTCGTTTGTTAAATTTATGG 59.260 38.462 0.00 0.00 37.69 2.74
4859 4952 7.477422 CAGTCGGTCTCGTTTGTTAAATTTATG 59.523 37.037 0.00 0.00 37.69 1.90
4860 4953 7.515643 CAGTCGGTCTCGTTTGTTAAATTTAT 58.484 34.615 0.00 0.00 37.69 1.40
4861 4954 6.564499 GCAGTCGGTCTCGTTTGTTAAATTTA 60.564 38.462 0.00 0.00 37.69 1.40
4862 4955 5.744490 CAGTCGGTCTCGTTTGTTAAATTT 58.256 37.500 0.00 0.00 37.69 1.82
4863 4956 4.319261 GCAGTCGGTCTCGTTTGTTAAATT 60.319 41.667 0.00 0.00 37.69 1.82
4864 4957 3.185797 GCAGTCGGTCTCGTTTGTTAAAT 59.814 43.478 0.00 0.00 37.69 1.40
4865 4958 2.540931 GCAGTCGGTCTCGTTTGTTAAA 59.459 45.455 0.00 0.00 37.69 1.52
4866 4959 2.129607 GCAGTCGGTCTCGTTTGTTAA 58.870 47.619 0.00 0.00 37.69 2.01
4867 4960 1.774639 GCAGTCGGTCTCGTTTGTTA 58.225 50.000 0.00 0.00 37.69 2.41
4868 4961 1.213094 CGCAGTCGGTCTCGTTTGTT 61.213 55.000 0.00 0.00 37.69 2.83
4869 4962 1.660575 CGCAGTCGGTCTCGTTTGT 60.661 57.895 0.00 0.00 37.69 2.83
4870 4963 3.147294 CGCAGTCGGTCTCGTTTG 58.853 61.111 0.00 0.00 37.69 2.93
4880 4973 4.735132 TTTCTCCCGCCGCAGTCG 62.735 66.667 0.00 0.00 0.00 4.18
4881 4974 1.912371 CTTTTTCTCCCGCCGCAGTC 61.912 60.000 0.00 0.00 0.00 3.51
4882 4975 1.966451 CTTTTTCTCCCGCCGCAGT 60.966 57.895 0.00 0.00 0.00 4.40
4883 4976 1.515521 AACTTTTTCTCCCGCCGCAG 61.516 55.000 0.00 0.00 0.00 5.18
4884 4977 1.512156 GAACTTTTTCTCCCGCCGCA 61.512 55.000 0.00 0.00 0.00 5.69
4885 4978 1.209383 GAACTTTTTCTCCCGCCGC 59.791 57.895 0.00 0.00 0.00 6.53
4886 4979 0.887387 TGGAACTTTTTCTCCCGCCG 60.887 55.000 0.00 0.00 31.71 6.46
4887 4980 1.545841 ATGGAACTTTTTCTCCCGCC 58.454 50.000 0.00 0.00 31.71 6.13
4888 4981 4.983671 ATTATGGAACTTTTTCTCCCGC 57.016 40.909 0.00 0.00 31.71 6.13
4889 4982 9.699703 TTTTTAATTATGGAACTTTTTCTCCCG 57.300 29.630 0.00 0.00 31.71 5.14
4898 4991 9.908152 CGGAAGAAGTTTTTAATTATGGAACTT 57.092 29.630 15.49 15.49 41.67 2.66
4899 4992 9.292195 TCGGAAGAAGTTTTTAATTATGGAACT 57.708 29.630 3.94 3.94 37.03 3.01
4900 4993 9.902196 TTCGGAAGAAGTTTTTAATTATGGAAC 57.098 29.630 0.00 0.00 46.92 3.62
4918 5011 5.319140 TCAGTGAATTCGTATTCGGAAGA 57.681 39.130 9.79 3.46 42.55 2.87
4919 5012 7.875316 ATATCAGTGAATTCGTATTCGGAAG 57.125 36.000 9.79 1.44 42.55 3.46
4920 5013 9.188588 GTTATATCAGTGAATTCGTATTCGGAA 57.811 33.333 9.79 0.00 42.55 4.30
4921 5014 8.573885 AGTTATATCAGTGAATTCGTATTCGGA 58.426 33.333 9.79 7.82 42.55 4.55
4922 5015 8.744008 AGTTATATCAGTGAATTCGTATTCGG 57.256 34.615 9.79 3.23 42.55 4.30
4927 5020 9.378551 AGCAAAAGTTATATCAGTGAATTCGTA 57.621 29.630 0.00 0.00 0.00 3.43
4928 5021 8.268850 AGCAAAAGTTATATCAGTGAATTCGT 57.731 30.769 0.00 0.00 0.00 3.85
4929 5022 7.852945 GGAGCAAAAGTTATATCAGTGAATTCG 59.147 37.037 0.00 0.00 0.00 3.34
4930 5023 8.131731 GGGAGCAAAAGTTATATCAGTGAATTC 58.868 37.037 0.00 0.00 0.00 2.17
4931 5024 7.201732 CGGGAGCAAAAGTTATATCAGTGAATT 60.202 37.037 0.00 0.00 0.00 2.17
4932 5025 6.260936 CGGGAGCAAAAGTTATATCAGTGAAT 59.739 38.462 0.00 0.00 0.00 2.57
4933 5026 5.584649 CGGGAGCAAAAGTTATATCAGTGAA 59.415 40.000 0.00 0.00 0.00 3.18
4934 5027 5.116180 CGGGAGCAAAAGTTATATCAGTGA 58.884 41.667 0.00 0.00 0.00 3.41
4935 5028 5.409643 CGGGAGCAAAAGTTATATCAGTG 57.590 43.478 0.00 0.00 0.00 3.66
4959 5052 1.722011 AACTACCAAGACCGATTGCG 58.278 50.000 0.00 0.00 37.24 4.85
4960 5053 5.813080 ATTTAACTACCAAGACCGATTGC 57.187 39.130 0.00 0.00 0.00 3.56
4961 5054 7.901377 CGTAAATTTAACTACCAAGACCGATTG 59.099 37.037 0.00 0.00 0.00 2.67
4962 5055 7.064966 CCGTAAATTTAACTACCAAGACCGATT 59.935 37.037 0.00 0.00 0.00 3.34
4963 5056 6.536224 CCGTAAATTTAACTACCAAGACCGAT 59.464 38.462 0.00 0.00 0.00 4.18
4964 5057 5.868801 CCGTAAATTTAACTACCAAGACCGA 59.131 40.000 0.00 0.00 0.00 4.69
4965 5058 5.639082 ACCGTAAATTTAACTACCAAGACCG 59.361 40.000 0.00 0.00 0.00 4.79
4966 5059 6.650390 TGACCGTAAATTTAACTACCAAGACC 59.350 38.462 0.00 0.00 0.00 3.85
4967 5060 7.656707 TGACCGTAAATTTAACTACCAAGAC 57.343 36.000 0.00 0.00 0.00 3.01
4968 5061 8.674263 TTTGACCGTAAATTTAACTACCAAGA 57.326 30.769 0.00 0.00 0.00 3.02
4969 5062 8.562052 ACTTTGACCGTAAATTTAACTACCAAG 58.438 33.333 0.00 2.45 0.00 3.61
4970 5063 8.449251 ACTTTGACCGTAAATTTAACTACCAA 57.551 30.769 0.00 0.00 0.00 3.67
4971 5064 8.344098 CAACTTTGACCGTAAATTTAACTACCA 58.656 33.333 0.00 0.00 0.00 3.25
4972 5065 8.558700 TCAACTTTGACCGTAAATTTAACTACC 58.441 33.333 0.00 0.00 31.01 3.18
4973 5066 9.934190 TTCAACTTTGACCGTAAATTTAACTAC 57.066 29.630 0.00 0.00 36.83 2.73
4975 5068 7.646526 GCTTCAACTTTGACCGTAAATTTAACT 59.353 33.333 0.00 0.00 36.83 2.24
4976 5069 7.432838 TGCTTCAACTTTGACCGTAAATTTAAC 59.567 33.333 0.00 0.00 36.83 2.01
4977 5070 7.432838 GTGCTTCAACTTTGACCGTAAATTTAA 59.567 33.333 0.00 0.00 36.83 1.52
4978 5071 6.913673 GTGCTTCAACTTTGACCGTAAATTTA 59.086 34.615 0.00 0.00 36.83 1.40
4979 5072 5.746721 GTGCTTCAACTTTGACCGTAAATTT 59.253 36.000 0.00 0.00 36.83 1.82
4980 5073 5.278604 GTGCTTCAACTTTGACCGTAAATT 58.721 37.500 0.00 0.00 36.83 1.82
4981 5074 4.553938 CGTGCTTCAACTTTGACCGTAAAT 60.554 41.667 0.00 0.00 36.83 1.40
4982 5075 3.242478 CGTGCTTCAACTTTGACCGTAAA 60.242 43.478 0.00 0.00 36.83 2.01
4983 5076 2.285756 CGTGCTTCAACTTTGACCGTAA 59.714 45.455 0.00 0.00 36.83 3.18
4984 5077 1.862201 CGTGCTTCAACTTTGACCGTA 59.138 47.619 0.00 0.00 36.83 4.02
4985 5078 0.655733 CGTGCTTCAACTTTGACCGT 59.344 50.000 0.00 0.00 36.83 4.83
4986 5079 0.041312 CCGTGCTTCAACTTTGACCG 60.041 55.000 0.00 0.00 36.83 4.79
4987 5080 0.310854 CCCGTGCTTCAACTTTGACC 59.689 55.000 0.00 0.00 36.83 4.02
4988 5081 0.310854 CCCCGTGCTTCAACTTTGAC 59.689 55.000 0.00 0.00 36.83 3.18
4989 5082 0.181587 TCCCCGTGCTTCAACTTTGA 59.818 50.000 0.00 0.00 34.92 2.69
4990 5083 1.247567 ATCCCCGTGCTTCAACTTTG 58.752 50.000 0.00 0.00 0.00 2.77
4991 5084 2.304761 TCTATCCCCGTGCTTCAACTTT 59.695 45.455 0.00 0.00 0.00 2.66
4992 5085 1.906574 TCTATCCCCGTGCTTCAACTT 59.093 47.619 0.00 0.00 0.00 2.66
4993 5086 1.482593 CTCTATCCCCGTGCTTCAACT 59.517 52.381 0.00 0.00 0.00 3.16
4994 5087 1.473434 CCTCTATCCCCGTGCTTCAAC 60.473 57.143 0.00 0.00 0.00 3.18
4995 5088 0.830648 CCTCTATCCCCGTGCTTCAA 59.169 55.000 0.00 0.00 0.00 2.69
4996 5089 0.032515 TCCTCTATCCCCGTGCTTCA 60.033 55.000 0.00 0.00 0.00 3.02
4997 5090 1.069358 CTTCCTCTATCCCCGTGCTTC 59.931 57.143 0.00 0.00 0.00 3.86
4998 5091 1.123928 CTTCCTCTATCCCCGTGCTT 58.876 55.000 0.00 0.00 0.00 3.91
4999 5092 1.403687 GCTTCCTCTATCCCCGTGCT 61.404 60.000 0.00 0.00 0.00 4.40
5000 5093 1.069935 GCTTCCTCTATCCCCGTGC 59.930 63.158 0.00 0.00 0.00 5.34
5001 5094 0.105039 GTGCTTCCTCTATCCCCGTG 59.895 60.000 0.00 0.00 0.00 4.94
5002 5095 0.032017 AGTGCTTCCTCTATCCCCGT 60.032 55.000 0.00 0.00 0.00 5.28
5003 5096 1.614413 GTAGTGCTTCCTCTATCCCCG 59.386 57.143 0.00 0.00 0.00 5.73
5004 5097 2.679082 TGTAGTGCTTCCTCTATCCCC 58.321 52.381 0.00 0.00 0.00 4.81
5005 5098 4.101741 ACAATGTAGTGCTTCCTCTATCCC 59.898 45.833 0.00 0.00 0.00 3.85
5006 5099 5.053145 CACAATGTAGTGCTTCCTCTATCC 58.947 45.833 0.00 0.00 32.04 2.59
5007 5100 5.053145 CCACAATGTAGTGCTTCCTCTATC 58.947 45.833 0.00 0.00 38.18 2.08
5008 5101 4.716784 TCCACAATGTAGTGCTTCCTCTAT 59.283 41.667 0.00 0.00 38.18 1.98
5009 5102 4.093743 TCCACAATGTAGTGCTTCCTCTA 58.906 43.478 0.00 0.00 38.18 2.43
5010 5103 2.906389 TCCACAATGTAGTGCTTCCTCT 59.094 45.455 0.00 0.00 38.18 3.69
5011 5104 3.334583 TCCACAATGTAGTGCTTCCTC 57.665 47.619 0.00 0.00 38.18 3.71
5012 5105 3.788227 TTCCACAATGTAGTGCTTCCT 57.212 42.857 0.00 0.00 38.18 3.36
5013 5106 3.129287 CCATTCCACAATGTAGTGCTTCC 59.871 47.826 0.00 0.00 38.22 3.46
5014 5107 4.009675 TCCATTCCACAATGTAGTGCTTC 58.990 43.478 0.00 0.00 38.22 3.86
5015 5108 4.012374 CTCCATTCCACAATGTAGTGCTT 58.988 43.478 0.00 0.00 38.22 3.91
5016 5109 3.614092 CTCCATTCCACAATGTAGTGCT 58.386 45.455 0.00 0.00 38.22 4.40
5017 5110 2.684881 CCTCCATTCCACAATGTAGTGC 59.315 50.000 0.00 0.00 38.22 4.40
5018 5111 3.054434 TCCCTCCATTCCACAATGTAGTG 60.054 47.826 0.00 0.00 38.22 2.74
5019 5112 3.189606 TCCCTCCATTCCACAATGTAGT 58.810 45.455 0.00 0.00 38.22 2.73
5020 5113 3.200825 ACTCCCTCCATTCCACAATGTAG 59.799 47.826 0.00 0.00 38.22 2.74
5021 5114 3.189606 ACTCCCTCCATTCCACAATGTA 58.810 45.455 0.00 0.00 38.22 2.29
5022 5115 1.995542 ACTCCCTCCATTCCACAATGT 59.004 47.619 0.00 0.00 38.22 2.71
5023 5116 2.814805 ACTCCCTCCATTCCACAATG 57.185 50.000 0.00 0.00 39.45 2.82
5024 5117 3.139025 CCATACTCCCTCCATTCCACAAT 59.861 47.826 0.00 0.00 0.00 2.71
5025 5118 2.509548 CCATACTCCCTCCATTCCACAA 59.490 50.000 0.00 0.00 0.00 3.33
5026 5119 2.126882 CCATACTCCCTCCATTCCACA 58.873 52.381 0.00 0.00 0.00 4.17
5027 5120 1.202818 GCCATACTCCCTCCATTCCAC 60.203 57.143 0.00 0.00 0.00 4.02
5028 5121 1.140312 GCCATACTCCCTCCATTCCA 58.860 55.000 0.00 0.00 0.00 3.53
5029 5122 1.349357 GAGCCATACTCCCTCCATTCC 59.651 57.143 0.00 0.00 39.75 3.01
5030 5123 2.849294 GAGCCATACTCCCTCCATTC 57.151 55.000 0.00 0.00 39.75 2.67
5039 5132 1.537135 GCCGTCAGAAGAGCCATACTC 60.537 57.143 0.00 0.00 46.66 2.59
5040 5133 0.461961 GCCGTCAGAAGAGCCATACT 59.538 55.000 0.00 0.00 0.00 2.12
5041 5134 0.175760 TGCCGTCAGAAGAGCCATAC 59.824 55.000 0.00 0.00 0.00 2.39
5085 5178 2.158608 ACCAAACTCCTGAAGGAACCAG 60.159 50.000 0.00 0.00 44.91 4.00
5091 5184 2.158755 AGACACACCAAACTCCTGAAGG 60.159 50.000 0.00 0.00 0.00 3.46
5219 5312 4.318021 GCACACCAGCACGCACAG 62.318 66.667 0.00 0.00 0.00 3.66
5381 5485 9.485206 GAAGGGTACACATGAAACGTAATATAT 57.515 33.333 0.00 0.00 0.00 0.86
5425 5529 2.348411 AATATGCAGGAAACCCCTCG 57.652 50.000 0.00 0.00 45.60 4.63
5672 5778 0.649475 CTCTCGATCTTTTGCTGCCG 59.351 55.000 0.00 0.00 0.00 5.69
5722 5828 2.238646 AGACCCAAACAGAGTTGACACA 59.761 45.455 0.00 0.00 0.00 3.72
5969 6089 9.533831 AACCTGATTTCCATAACAAGAATAGTT 57.466 29.630 0.00 0.00 0.00 2.24
6009 6129 6.716628 TGCTGACAGAAGGAAGATAAACAAAT 59.283 34.615 6.65 0.00 0.00 2.32
6010 6130 6.061441 TGCTGACAGAAGGAAGATAAACAAA 58.939 36.000 6.65 0.00 0.00 2.83
6011 6131 5.620206 TGCTGACAGAAGGAAGATAAACAA 58.380 37.500 6.65 0.00 0.00 2.83
6012 6132 5.227569 TGCTGACAGAAGGAAGATAAACA 57.772 39.130 6.65 0.00 0.00 2.83
6013 6133 5.703130 ACTTGCTGACAGAAGGAAGATAAAC 59.297 40.000 6.65 0.00 45.58 2.01
6014 6134 5.869579 ACTTGCTGACAGAAGGAAGATAAA 58.130 37.500 6.65 0.00 45.58 1.40
6015 6135 5.489792 ACTTGCTGACAGAAGGAAGATAA 57.510 39.130 6.65 0.00 45.58 1.75
6151 6271 5.527214 CCGTCCAATAGCAACAATTCAGATA 59.473 40.000 0.00 0.00 0.00 1.98
6518 6638 4.323104 GCATTCTCCTGGACTAGTTCTTGT 60.323 45.833 2.07 0.00 0.00 3.16
6587 6707 7.781324 ACAACTAAGGAATGAAATGTGGAAT 57.219 32.000 0.00 0.00 0.00 3.01
6849 6969 3.265479 ACCTCTGCAAAGAAGATTAGGCT 59.735 43.478 0.00 0.00 0.00 4.58
6879 6999 8.700051 TGGATTTTTAGGAGAAAAATGTGAACA 58.300 29.630 11.60 0.00 39.23 3.18
6895 7015 6.222389 TGGCAGAAACAATGTGGATTTTTAG 58.778 36.000 0.00 0.00 0.00 1.85
6931 7051 8.519492 TTTTACATTCTTTATGCTTCTGTTGC 57.481 30.769 0.00 0.00 37.81 4.17
7167 7287 8.622157 TGAAACATCAAAAATAAGGAACGTGTA 58.378 29.630 0.00 0.00 0.00 2.90
7252 7372 2.965147 TTGCGTCATTCGTGCCTGC 61.965 57.895 0.00 0.00 42.13 4.85
7641 7769 7.441836 TCTTTACACATCTGTAGAAGCAGAAA 58.558 34.615 0.00 0.00 46.93 2.52
7678 7806 3.822735 CAGCCTTCCAGAACAGAAATTCA 59.177 43.478 0.00 0.00 0.00 2.57
7714 7842 2.303022 GAGACCTCCATCACAGACCAAA 59.697 50.000 0.00 0.00 0.00 3.28
7738 7868 0.833287 ACTAGTGCTACCATGGCAGG 59.167 55.000 13.04 3.04 40.54 4.85
7739 7869 1.945387 CACTAGTGCTACCATGGCAG 58.055 55.000 13.04 10.18 40.54 4.85
8019 8191 7.067737 CCAAACTAGAAAACTTCCTACCAAACA 59.932 37.037 0.00 0.00 0.00 2.83
8027 8199 3.570125 GCTGCCAAACTAGAAAACTTCCT 59.430 43.478 0.00 0.00 0.00 3.36
8047 8219 4.346730 TCATTTCACAAATCCATCTGGCT 58.653 39.130 0.00 0.00 34.44 4.75
8092 8264 3.710722 CTCCCCAACTCGCAGCCT 61.711 66.667 0.00 0.00 0.00 4.58
8117 8289 1.595929 GACTCGTTTTCCACCGGCA 60.596 57.895 0.00 0.00 0.00 5.69
8129 8301 0.462789 ACAACCAAAGTCGGACTCGT 59.537 50.000 11.71 5.46 37.69 4.18
8232 8417 5.477291 TCCGATCTAAGATACCCAGATCAAC 59.523 44.000 10.47 0.00 43.16 3.18
8258 8443 2.224066 GGATACCCAGATCAAGGTCGTG 60.224 54.545 9.76 0.00 37.59 4.35
8286 8471 0.997196 GAATAGCACCGTCGTTGTCC 59.003 55.000 0.00 0.00 0.00 4.02
8290 8475 1.274167 TCAAGGAATAGCACCGTCGTT 59.726 47.619 0.00 0.00 0.00 3.85
8296 8481 2.173569 ACCCAGATCAAGGAATAGCACC 59.826 50.000 7.96 0.00 0.00 5.01
8297 8482 3.567478 ACCCAGATCAAGGAATAGCAC 57.433 47.619 7.96 0.00 0.00 4.40
8298 8483 4.287067 GGATACCCAGATCAAGGAATAGCA 59.713 45.833 7.96 0.00 0.00 3.49
8299 8484 4.534103 AGGATACCCAGATCAAGGAATAGC 59.466 45.833 7.96 2.67 33.88 2.97
8300 8485 7.185565 TCTAGGATACCCAGATCAAGGAATAG 58.814 42.308 7.96 3.47 33.88 1.73
8301 8486 7.116089 TCTAGGATACCCAGATCAAGGAATA 57.884 40.000 7.96 0.59 33.88 1.75
8302 8487 5.982391 TCTAGGATACCCAGATCAAGGAAT 58.018 41.667 7.96 0.96 33.88 3.01
8303 8488 5.418692 TCTAGGATACCCAGATCAAGGAA 57.581 43.478 7.96 0.00 33.88 3.36
8304 8489 5.584913 GATCTAGGATACCCAGATCAAGGA 58.415 45.833 16.86 0.00 41.52 3.36
8305 8490 4.400884 CGATCTAGGATACCCAGATCAAGG 59.599 50.000 19.89 0.00 41.72 3.61
8306 8491 5.013547 ACGATCTAGGATACCCAGATCAAG 58.986 45.833 19.89 10.98 41.72 3.02
8307 8492 4.999310 ACGATCTAGGATACCCAGATCAA 58.001 43.478 19.89 0.00 41.72 2.57
8308 8493 4.659529 ACGATCTAGGATACCCAGATCA 57.340 45.455 19.89 0.00 41.72 2.92
8309 8494 5.498393 TGTACGATCTAGGATACCCAGATC 58.502 45.833 13.43 13.43 40.18 2.75
8310 8495 5.516059 TGTACGATCTAGGATACCCAGAT 57.484 43.478 0.00 0.00 34.91 2.90
8311 8496 4.987963 TGTACGATCTAGGATACCCAGA 57.012 45.455 0.00 0.00 33.88 3.86
8312 8497 5.710567 TCATTGTACGATCTAGGATACCCAG 59.289 44.000 0.00 0.00 33.88 4.45
8313 8498 5.475909 GTCATTGTACGATCTAGGATACCCA 59.524 44.000 0.00 0.00 33.88 4.51
8314 8499 5.391736 CGTCATTGTACGATCTAGGATACCC 60.392 48.000 0.00 0.00 45.68 3.69
8315 8500 5.391736 CCGTCATTGTACGATCTAGGATACC 60.392 48.000 9.29 0.00 45.68 2.73
8316 8501 5.180868 ACCGTCATTGTACGATCTAGGATAC 59.819 44.000 12.01 0.00 45.68 2.24
8317 8502 5.180680 CACCGTCATTGTACGATCTAGGATA 59.819 44.000 12.01 0.00 45.68 2.59
8318 8503 4.023107 CACCGTCATTGTACGATCTAGGAT 60.023 45.833 12.01 0.00 45.68 3.24
8319 8504 3.314357 CACCGTCATTGTACGATCTAGGA 59.686 47.826 12.01 0.00 45.68 2.94
8320 8505 3.629058 CACCGTCATTGTACGATCTAGG 58.371 50.000 9.29 0.00 45.68 3.02
8321 8506 3.043586 GCACCGTCATTGTACGATCTAG 58.956 50.000 9.29 0.00 45.68 2.43
8322 8507 2.686405 AGCACCGTCATTGTACGATCTA 59.314 45.455 9.29 0.00 45.68 1.98
8323 8508 1.476891 AGCACCGTCATTGTACGATCT 59.523 47.619 9.29 2.79 45.68 2.75
8324 8509 1.922570 AGCACCGTCATTGTACGATC 58.077 50.000 9.29 0.00 45.68 3.69
8325 8510 3.728076 ATAGCACCGTCATTGTACGAT 57.272 42.857 9.29 0.00 45.68 3.73
8326 8511 3.441163 GAATAGCACCGTCATTGTACGA 58.559 45.455 9.29 0.00 45.68 3.43
8327 8512 2.215587 CGAATAGCACCGTCATTGTACG 59.784 50.000 0.00 0.00 42.49 3.67
8328 8513 3.000078 CACGAATAGCACCGTCATTGTAC 60.000 47.826 0.00 0.00 36.83 2.90
8329 8514 3.183754 CACGAATAGCACCGTCATTGTA 58.816 45.455 0.00 0.00 36.83 2.41
8330 8515 1.999735 CACGAATAGCACCGTCATTGT 59.000 47.619 0.00 0.00 36.83 2.71
8331 8516 1.267532 GCACGAATAGCACCGTCATTG 60.268 52.381 0.00 0.00 36.83 2.82
8332 8517 1.006832 GCACGAATAGCACCGTCATT 58.993 50.000 0.00 0.00 36.83 2.57
8333 8518 0.175760 AGCACGAATAGCACCGTCAT 59.824 50.000 0.00 0.00 36.83 3.06
8334 8519 0.735978 CAGCACGAATAGCACCGTCA 60.736 55.000 0.00 0.00 36.83 4.35
8335 8520 0.736325 ACAGCACGAATAGCACCGTC 60.736 55.000 0.00 0.00 36.83 4.79
8336 8521 0.528924 TACAGCACGAATAGCACCGT 59.471 50.000 0.00 0.00 39.88 4.83
8337 8522 1.852942 ATACAGCACGAATAGCACCG 58.147 50.000 0.00 0.00 0.00 4.94
8346 8531 3.261580 CACATGAAGGAATACAGCACGA 58.738 45.455 0.00 0.00 0.00 4.35
8347 8532 2.352651 CCACATGAAGGAATACAGCACG 59.647 50.000 0.00 0.00 0.00 5.34
8412 8597 1.589196 GGTAGATGTCACGCCGCTC 60.589 63.158 0.00 0.00 0.00 5.03
8422 8607 3.334691 CCAACATTGACACGGTAGATGT 58.665 45.455 0.00 0.00 32.70 3.06
8429 8614 2.560861 CCGCCAACATTGACACGG 59.439 61.111 6.38 6.38 34.46 4.94
8454 8639 2.986979 CTGTGCAGCACCATGCCA 60.987 61.111 23.06 1.82 46.52 4.92
8465 8650 4.560743 TGCCGCCAAGACTGTGCA 62.561 61.111 0.00 0.00 0.00 4.57
8482 8667 2.507944 GCCCATCCAGACGCATCT 59.492 61.111 0.00 0.00 34.57 2.90
8538 8723 2.093216 GCATCAACCTTGCGAGGAG 58.907 57.895 27.65 17.64 46.74 3.69
8605 8792 3.749088 ACATATCGATCCGACTGACTCTC 59.251 47.826 0.00 0.00 39.18 3.20
8606 8793 3.500299 CACATATCGATCCGACTGACTCT 59.500 47.826 0.00 0.00 39.18 3.24
8619 8806 1.407656 GGGTCTGGGGCACATATCGA 61.408 60.000 0.00 0.00 0.00 3.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.