Multiple sequence alignment - TraesCS7A01G291800
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7A01G291800 | chr7A | 100.000 | 5981 | 0 | 0 | 1 | 5981 | 360083969 | 360077989 | 0.000000e+00 | 11045.0 |
1 | TraesCS7A01G291800 | chr7B | 96.496 | 4480 | 112 | 20 | 856 | 5326 | 346678502 | 346674059 | 0.000000e+00 | 7361.0 |
2 | TraesCS7A01G291800 | chr7B | 81.800 | 489 | 70 | 14 | 5494 | 5968 | 259788679 | 259788196 | 5.620000e-105 | 392.0 |
3 | TraesCS7A01G291800 | chr7B | 93.277 | 119 | 8 | 0 | 5375 | 5493 | 346674065 | 346673947 | 6.160000e-40 | 176.0 |
4 | TraesCS7A01G291800 | chr7D | 96.407 | 4481 | 100 | 21 | 869 | 5326 | 337559772 | 337555330 | 0.000000e+00 | 7326.0 |
5 | TraesCS7A01G291800 | chr7D | 93.770 | 610 | 33 | 4 | 5375 | 5980 | 337555336 | 337554728 | 0.000000e+00 | 911.0 |
6 | TraesCS7A01G291800 | chr7D | 81.748 | 389 | 63 | 8 | 5494 | 5877 | 286667700 | 286667315 | 9.670000e-83 | 318.0 |
7 | TraesCS7A01G291800 | chr7D | 89.888 | 89 | 7 | 2 | 1666 | 1753 | 1963816 | 1963903 | 4.900000e-21 | 113.0 |
8 | TraesCS7A01G291800 | chr7D | 82.353 | 102 | 16 | 2 | 1650 | 1750 | 454075493 | 454075593 | 2.970000e-13 | 87.9 |
9 | TraesCS7A01G291800 | chr7D | 100.000 | 30 | 0 | 0 | 2887 | 2916 | 337557653 | 337557624 | 8.370000e-04 | 56.5 |
10 | TraesCS7A01G291800 | chr3B | 90.773 | 867 | 68 | 8 | 1 | 866 | 75979928 | 75980783 | 0.000000e+00 | 1147.0 |
11 | TraesCS7A01G291800 | chr3B | 80.287 | 487 | 62 | 23 | 5493 | 5954 | 323682642 | 323682165 | 2.670000e-88 | 337.0 |
12 | TraesCS7A01G291800 | chr3B | 85.437 | 103 | 15 | 0 | 1650 | 1752 | 457631397 | 457631295 | 2.280000e-19 | 108.0 |
13 | TraesCS7A01G291800 | chr5D | 92.683 | 492 | 28 | 7 | 5493 | 5980 | 225528812 | 225529299 | 0.000000e+00 | 702.0 |
14 | TraesCS7A01G291800 | chr5D | 91.700 | 494 | 34 | 6 | 5491 | 5980 | 225492988 | 225493478 | 0.000000e+00 | 678.0 |
15 | TraesCS7A01G291800 | chr5D | 83.299 | 491 | 57 | 16 | 5493 | 5968 | 157440584 | 157440104 | 4.280000e-116 | 429.0 |
16 | TraesCS7A01G291800 | chr6D | 91.304 | 483 | 32 | 7 | 388 | 866 | 467537672 | 467538148 | 0.000000e+00 | 651.0 |
17 | TraesCS7A01G291800 | chr6D | 94.375 | 160 | 9 | 0 | 4 | 163 | 467537380 | 467537539 | 4.630000e-61 | 246.0 |
18 | TraesCS7A01G291800 | chr6D | 100.000 | 29 | 0 | 0 | 179 | 207 | 467537537 | 467537565 | 3.000000e-03 | 54.7 |
19 | TraesCS7A01G291800 | chr4D | 87.781 | 311 | 28 | 8 | 5674 | 5978 | 180345990 | 180345684 | 7.370000e-94 | 355.0 |
20 | TraesCS7A01G291800 | chr4D | 89.873 | 237 | 12 | 6 | 607 | 842 | 342698209 | 342698434 | 1.630000e-75 | 294.0 |
21 | TraesCS7A01G291800 | chr3D | 80.392 | 459 | 71 | 18 | 5494 | 5942 | 244227827 | 244228276 | 1.240000e-86 | 331.0 |
22 | TraesCS7A01G291800 | chr4A | 79.596 | 446 | 70 | 18 | 5494 | 5925 | 277382136 | 277382574 | 3.500000e-77 | 300.0 |
23 | TraesCS7A01G291800 | chr4B | 89.744 | 234 | 17 | 5 | 607 | 840 | 424721035 | 424721261 | 5.860000e-75 | 292.0 |
24 | TraesCS7A01G291800 | chr4B | 85.577 | 104 | 15 | 0 | 1650 | 1753 | 621511686 | 621511583 | 6.340000e-20 | 110.0 |
25 | TraesCS7A01G291800 | chr4B | 86.517 | 89 | 10 | 2 | 1666 | 1753 | 411629663 | 411629576 | 4.930000e-16 | 97.1 |
26 | TraesCS7A01G291800 | chr2B | 82.895 | 228 | 27 | 8 | 5750 | 5965 | 349761088 | 349760861 | 1.700000e-45 | 195.0 |
27 | TraesCS7A01G291800 | chr2B | 88.043 | 92 | 7 | 1 | 1648 | 1739 | 56897190 | 56897277 | 8.200000e-19 | 106.0 |
28 | TraesCS7A01G291800 | chr2B | 93.056 | 72 | 5 | 0 | 612 | 683 | 97952553 | 97952482 | 8.200000e-19 | 106.0 |
29 | TraesCS7A01G291800 | chr5A | 85.556 | 90 | 11 | 2 | 1665 | 1753 | 577485291 | 577485379 | 6.380000e-15 | 93.5 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7A01G291800 | chr7A | 360077989 | 360083969 | 5980 | True | 11045.000000 | 11045 | 100.000000 | 1 | 5981 | 1 | chr7A.!!$R1 | 5980 |
1 | TraesCS7A01G291800 | chr7B | 346673947 | 346678502 | 4555 | True | 3768.500000 | 7361 | 94.886500 | 856 | 5493 | 2 | chr7B.!!$R2 | 4637 |
2 | TraesCS7A01G291800 | chr7D | 337554728 | 337559772 | 5044 | True | 2764.500000 | 7326 | 96.725667 | 869 | 5980 | 3 | chr7D.!!$R2 | 5111 |
3 | TraesCS7A01G291800 | chr3B | 75979928 | 75980783 | 855 | False | 1147.000000 | 1147 | 90.773000 | 1 | 866 | 1 | chr3B.!!$F1 | 865 |
4 | TraesCS7A01G291800 | chr6D | 467537380 | 467538148 | 768 | False | 317.233333 | 651 | 95.226333 | 4 | 866 | 3 | chr6D.!!$F1 | 862 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
244 | 325 | 0.251354 | GCTGAGAAGCTCCACATCCA | 59.749 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 | F |
589 | 672 | 0.528249 | CCAACTTGTGCAAGCGCTTT | 60.528 | 50.000 | 22.51 | 0.03 | 41.99 | 3.51 | F |
1392 | 1478 | 1.079197 | TGCGTCGCACTCCATCAAT | 60.079 | 52.632 | 17.58 | 0.00 | 31.71 | 2.57 | F |
2029 | 2115 | 2.285368 | TCCCCTCGCAATGGACCT | 60.285 | 61.111 | 0.00 | 0.00 | 0.00 | 3.85 | F |
2879 | 2968 | 4.202010 | GCAGCAACACGGAAACCAATATAT | 60.202 | 41.667 | 0.00 | 0.00 | 0.00 | 0.86 | F |
3364 | 3477 | 4.260985 | TCTGCCAATACATGTGTACCTTG | 58.739 | 43.478 | 9.11 | 4.55 | 32.72 | 3.61 | F |
4324 | 4439 | 1.950216 | TGATCTCTCCGATGGACTTCG | 59.050 | 52.381 | 0.00 | 1.14 | 38.83 | 3.79 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1740 | 1826 | 0.030807 | TCTCATGCTCCCTCCATCCA | 60.031 | 55.000 | 0.0 | 0.0 | 0.00 | 3.41 | R |
2152 | 2238 | 2.093973 | AGGTGCATAGAAACAGGACTCG | 60.094 | 50.000 | 0.0 | 0.0 | 0.00 | 4.18 | R |
3304 | 3416 | 1.696884 | GCTTTGGGGGAACAAAATCCA | 59.303 | 47.619 | 0.0 | 0.0 | 41.55 | 3.41 | R |
3990 | 4105 | 2.161855 | CAATTGCTGCCAGGTAAGTGA | 58.838 | 47.619 | 0.0 | 0.0 | 30.83 | 3.41 | R |
4313 | 4428 | 0.103026 | TGCCAGATCGAAGTCCATCG | 59.897 | 55.000 | 0.0 | 0.0 | 44.04 | 3.84 | R |
4347 | 4462 | 2.279173 | AGGCAAAGGTCCAGTATTCCT | 58.721 | 47.619 | 0.0 | 0.0 | 0.00 | 3.36 | R |
5452 | 5567 | 0.813610 | CTTGCGTGTGACCCAGTTGA | 60.814 | 55.000 | 0.0 | 0.0 | 0.00 | 3.18 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
20 | 21 | 2.047742 | GCCTAAGGATGAGGATGGGGT | 61.048 | 57.143 | 0.00 | 0.00 | 40.24 | 4.95 |
45 | 46 | 9.243637 | GTGCACATTTTCTTAAGATGTAAACAA | 57.756 | 29.630 | 13.17 | 0.00 | 33.03 | 2.83 |
57 | 58 | 6.377327 | AGATGTAAACAAGTCAAACCACTG | 57.623 | 37.500 | 0.00 | 0.00 | 0.00 | 3.66 |
92 | 93 | 4.379918 | GCAGTTGGAGCAAACTAGAATTCC | 60.380 | 45.833 | 0.65 | 0.00 | 38.34 | 3.01 |
118 | 119 | 1.191489 | TGATGAGGTGGGTGCGAAGA | 61.191 | 55.000 | 0.00 | 0.00 | 0.00 | 2.87 |
139 | 140 | 5.273208 | AGAAGCTAGTCACCAGAATCCTAA | 58.727 | 41.667 | 0.00 | 0.00 | 0.00 | 2.69 |
235 | 316 | 2.264166 | GTGAGCCGCTGAGAAGCT | 59.736 | 61.111 | 0.00 | 0.00 | 40.24 | 3.74 |
237 | 318 | 2.202864 | GAGCCGCTGAGAAGCTCC | 60.203 | 66.667 | 11.70 | 0.00 | 45.83 | 4.70 |
238 | 319 | 2.999648 | AGCCGCTGAGAAGCTCCA | 61.000 | 61.111 | 0.00 | 0.00 | 28.40 | 3.86 |
242 | 323 | 0.809241 | CCGCTGAGAAGCTCCACATC | 60.809 | 60.000 | 0.00 | 0.00 | 0.00 | 3.06 |
243 | 324 | 0.809241 | CGCTGAGAAGCTCCACATCC | 60.809 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
244 | 325 | 0.251354 | GCTGAGAAGCTCCACATCCA | 59.749 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
271 | 352 | 3.107402 | AGAGGATTAGGAGTGCAGTGA | 57.893 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
293 | 374 | 2.034124 | AGATGCAAAGCTTGTTGGTGT | 58.966 | 42.857 | 0.00 | 0.00 | 0.00 | 4.16 |
312 | 393 | 7.372451 | TGGTGTGAGGAAAAATTCTATAACG | 57.628 | 36.000 | 0.00 | 0.00 | 0.00 | 3.18 |
317 | 398 | 7.132863 | GTGAGGAAAAATTCTATAACGATGCC | 58.867 | 38.462 | 0.00 | 0.00 | 0.00 | 4.40 |
332 | 413 | 1.834263 | GATGCCAGAGAGTAGTTGGGT | 59.166 | 52.381 | 0.00 | 0.00 | 32.53 | 4.51 |
351 | 432 | 3.674997 | GGTACCTTCAGAACAGAATGCA | 58.325 | 45.455 | 4.06 | 0.00 | 42.53 | 3.96 |
362 | 443 | 9.453572 | TTCAGAACAGAATGCACTAAAGATTAT | 57.546 | 29.630 | 0.00 | 0.00 | 42.53 | 1.28 |
366 | 447 | 9.875675 | GAACAGAATGCACTAAAGATTATCATC | 57.124 | 33.333 | 0.00 | 0.00 | 42.53 | 2.92 |
386 | 467 | 6.996509 | TCATCGATGGAAGTATGAATGATGA | 58.003 | 36.000 | 24.61 | 0.00 | 37.83 | 2.92 |
398 | 481 | 4.824479 | TGAATGATGACCTAGCAACAGA | 57.176 | 40.909 | 0.00 | 0.00 | 0.00 | 3.41 |
438 | 521 | 1.160137 | GTGACAGTCAAGGACATGCC | 58.840 | 55.000 | 4.32 | 0.00 | 34.60 | 4.40 |
573 | 656 | 2.228582 | CGTTGAAACAGATGCATCCCAA | 59.771 | 45.455 | 23.06 | 15.29 | 0.00 | 4.12 |
589 | 672 | 0.528249 | CCAACTTGTGCAAGCGCTTT | 60.528 | 50.000 | 22.51 | 0.03 | 41.99 | 3.51 |
594 | 677 | 1.661498 | TTGTGCAAGCGCTTTGGTCA | 61.661 | 50.000 | 22.51 | 14.22 | 39.64 | 4.02 |
620 | 703 | 6.745116 | ACGACCAAGATATGACGATAAATGA | 58.255 | 36.000 | 0.00 | 0.00 | 34.51 | 2.57 |
690 | 774 | 2.994186 | TCCGTATTACTTTCTGCCCC | 57.006 | 50.000 | 0.00 | 0.00 | 0.00 | 5.80 |
774 | 858 | 4.314522 | TCCCAGCTTTATGGTCAAATGA | 57.685 | 40.909 | 0.00 | 0.00 | 38.81 | 2.57 |
800 | 884 | 4.440880 | CCCTGATTTTGTGCAAAACTTGA | 58.559 | 39.130 | 11.64 | 0.00 | 42.32 | 3.02 |
823 | 907 | 2.359602 | AGCGATGCTGCTGTGCTT | 60.360 | 55.556 | 0.00 | 0.00 | 45.28 | 3.91 |
840 | 924 | 6.818142 | GCTGTGCTTTTTGGTTAATGGAATAT | 59.182 | 34.615 | 0.00 | 0.00 | 0.00 | 1.28 |
841 | 925 | 7.978975 | GCTGTGCTTTTTGGTTAATGGAATATA | 59.021 | 33.333 | 0.00 | 0.00 | 0.00 | 0.86 |
842 | 926 | 9.301153 | CTGTGCTTTTTGGTTAATGGAATATAC | 57.699 | 33.333 | 0.00 | 0.00 | 0.00 | 1.47 |
843 | 927 | 9.030452 | TGTGCTTTTTGGTTAATGGAATATACT | 57.970 | 29.630 | 0.00 | 0.00 | 0.00 | 2.12 |
844 | 928 | 9.516314 | GTGCTTTTTGGTTAATGGAATATACTC | 57.484 | 33.333 | 0.00 | 0.00 | 0.00 | 2.59 |
845 | 929 | 9.474313 | TGCTTTTTGGTTAATGGAATATACTCT | 57.526 | 29.630 | 0.00 | 0.00 | 0.00 | 3.24 |
916 | 1000 | 6.578944 | ACAATACCGCATCTACTTGTCATAA | 58.421 | 36.000 | 0.00 | 0.00 | 0.00 | 1.90 |
933 | 1017 | 4.214119 | GTCATAACATCCATCCAATCACCG | 59.786 | 45.833 | 0.00 | 0.00 | 0.00 | 4.94 |
1392 | 1478 | 1.079197 | TGCGTCGCACTCCATCAAT | 60.079 | 52.632 | 17.58 | 0.00 | 31.71 | 2.57 |
1643 | 1729 | 3.986277 | AGTAGTGTCGGTGTTGGTTAAG | 58.014 | 45.455 | 0.00 | 0.00 | 0.00 | 1.85 |
1648 | 1734 | 3.059393 | GTGTCGGTGTTGGTTAAGTTAGC | 60.059 | 47.826 | 0.00 | 0.00 | 0.00 | 3.09 |
1720 | 1806 | 7.847711 | AGTATTTCAGTGCTAGATACATCCT | 57.152 | 36.000 | 0.00 | 0.00 | 0.00 | 3.24 |
1740 | 1826 | 6.385649 | TCCTTTTGAGCGACAAGTAATTTT | 57.614 | 33.333 | 0.00 | 0.00 | 39.77 | 1.82 |
2029 | 2115 | 2.285368 | TCCCCTCGCAATGGACCT | 60.285 | 61.111 | 0.00 | 0.00 | 0.00 | 3.85 |
2152 | 2238 | 4.916983 | AGCTCACATCTCTACAGATCAC | 57.083 | 45.455 | 0.00 | 0.00 | 37.25 | 3.06 |
2199 | 2285 | 8.898761 | TCTACAGAAAACTTGCACAAATCTTAA | 58.101 | 29.630 | 0.00 | 0.00 | 0.00 | 1.85 |
2200 | 2286 | 9.683069 | CTACAGAAAACTTGCACAAATCTTAAT | 57.317 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
2233 | 2321 | 6.727394 | AGTTACAAGAATGTAGGGGCAAATA | 58.273 | 36.000 | 0.00 | 0.00 | 42.72 | 1.40 |
2243 | 2331 | 4.228666 | TGTAGGGGCAAATATGTACCAGTT | 59.771 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
2250 | 2338 | 6.376018 | GGGCAAATATGTACCAGTTACAGAAA | 59.624 | 38.462 | 0.00 | 0.00 | 44.14 | 2.52 |
2338 | 2426 | 9.499479 | AGCTCCTTTGTCAGATATTATGTATTG | 57.501 | 33.333 | 0.00 | 0.00 | 0.00 | 1.90 |
2339 | 2427 | 9.277783 | GCTCCTTTGTCAGATATTATGTATTGT | 57.722 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
2391 | 2479 | 6.070251 | TGCATTATCTCCCTGAAACTAAGACA | 60.070 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
2394 | 2482 | 7.496346 | TTATCTCCCTGAAACTAAGACACAT | 57.504 | 36.000 | 0.00 | 0.00 | 0.00 | 3.21 |
2666 | 2754 | 7.092079 | CAGAAAATTGTTCCTACATGCATGAA | 58.908 | 34.615 | 32.75 | 14.86 | 33.44 | 2.57 |
2831 | 2919 | 5.033589 | TCAAAGTTTTACGAGGGGTGTAA | 57.966 | 39.130 | 0.00 | 0.00 | 0.00 | 2.41 |
2879 | 2968 | 4.202010 | GCAGCAACACGGAAACCAATATAT | 60.202 | 41.667 | 0.00 | 0.00 | 0.00 | 0.86 |
3095 | 3205 | 5.067273 | CCACACTATGTTGGGTTAAGTTGA | 58.933 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
3235 | 3345 | 8.367156 | TCTTTTCTCCTGTGAAATTTTTATGGG | 58.633 | 33.333 | 0.00 | 0.00 | 36.07 | 4.00 |
3364 | 3477 | 4.260985 | TCTGCCAATACATGTGTACCTTG | 58.739 | 43.478 | 9.11 | 4.55 | 32.72 | 3.61 |
3422 | 3535 | 7.333528 | AGCAATTTGAAGTTTCACTAGTTCA | 57.666 | 32.000 | 0.00 | 0.00 | 36.83 | 3.18 |
3543 | 3656 | 4.631813 | GCAGAAGTAACAGGTTCTACCATG | 59.368 | 45.833 | 0.00 | 0.00 | 41.95 | 3.66 |
3767 | 3882 | 9.425893 | GTTTTTAGCTTTGCTGAATTTTCTTTC | 57.574 | 29.630 | 0.00 | 0.00 | 40.10 | 2.62 |
3807 | 3922 | 5.106515 | GGTTTGCACCTTTTCTCTGTCTATC | 60.107 | 44.000 | 0.00 | 0.00 | 40.44 | 2.08 |
3990 | 4105 | 5.369110 | AGAGCTGGAACTAGATCATCCAATT | 59.631 | 40.000 | 0.00 | 0.00 | 42.41 | 2.32 |
4313 | 4428 | 3.557228 | ACATGGCTTCTTGATCTCTCC | 57.443 | 47.619 | 0.00 | 0.00 | 0.00 | 3.71 |
4324 | 4439 | 1.950216 | TGATCTCTCCGATGGACTTCG | 59.050 | 52.381 | 0.00 | 1.14 | 38.83 | 3.79 |
4347 | 4462 | 3.430862 | GCAGTTGGCGCCGAATGA | 61.431 | 61.111 | 40.62 | 14.24 | 0.00 | 2.57 |
4350 | 4465 | 2.435938 | GTTGGCGCCGAATGAGGA | 60.436 | 61.111 | 20.60 | 0.00 | 0.00 | 3.71 |
4451 | 4566 | 6.013379 | TGGTAGAGGATCAGAATATGAGGTC | 58.987 | 44.000 | 0.00 | 0.00 | 42.53 | 3.85 |
5173 | 5288 | 1.653151 | GGTGATGTAGAGCGGGTTTC | 58.347 | 55.000 | 0.00 | 0.00 | 0.00 | 2.78 |
5217 | 5332 | 9.722184 | ATGTACATCCTTTCTCAGATTCATATG | 57.278 | 33.333 | 1.41 | 0.00 | 0.00 | 1.78 |
5249 | 5364 | 3.912496 | TGTCTGTCAATACCATCTGGG | 57.088 | 47.619 | 0.54 | 0.00 | 44.81 | 4.45 |
5274 | 5389 | 2.856760 | TTGCTACTCCCTCTGATCCT | 57.143 | 50.000 | 0.00 | 0.00 | 0.00 | 3.24 |
5282 | 5397 | 7.176490 | GCTACTCCCTCTGATCCTTATTACTA | 58.824 | 42.308 | 0.00 | 0.00 | 0.00 | 1.82 |
5283 | 5398 | 7.121611 | GCTACTCCCTCTGATCCTTATTACTAC | 59.878 | 44.444 | 0.00 | 0.00 | 0.00 | 2.73 |
5284 | 5399 | 7.169287 | ACTCCCTCTGATCCTTATTACTACT | 57.831 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
5306 | 5421 | 6.634805 | ACTTGTGATGACTTCTCATTATCGT | 58.365 | 36.000 | 0.00 | 0.00 | 37.24 | 3.73 |
5322 | 5437 | 8.335532 | TCATTATCGTTGTGAAAAGAAGGATT | 57.664 | 30.769 | 0.00 | 0.00 | 31.14 | 3.01 |
5323 | 5438 | 9.443323 | TCATTATCGTTGTGAAAAGAAGGATTA | 57.557 | 29.630 | 0.00 | 0.00 | 31.14 | 1.75 |
5324 | 5439 | 9.708222 | CATTATCGTTGTGAAAAGAAGGATTAG | 57.292 | 33.333 | 0.00 | 0.00 | 31.14 | 1.73 |
5325 | 5440 | 8.842358 | TTATCGTTGTGAAAAGAAGGATTAGT | 57.158 | 30.769 | 0.00 | 0.00 | 31.14 | 2.24 |
5326 | 5441 | 7.745620 | ATCGTTGTGAAAAGAAGGATTAGTT | 57.254 | 32.000 | 0.00 | 0.00 | 0.00 | 2.24 |
5327 | 5442 | 7.562454 | TCGTTGTGAAAAGAAGGATTAGTTT | 57.438 | 32.000 | 0.00 | 0.00 | 0.00 | 2.66 |
5328 | 5443 | 8.665643 | TCGTTGTGAAAAGAAGGATTAGTTTA | 57.334 | 30.769 | 0.00 | 0.00 | 0.00 | 2.01 |
5329 | 5444 | 9.280174 | TCGTTGTGAAAAGAAGGATTAGTTTAT | 57.720 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
5330 | 5445 | 9.543018 | CGTTGTGAAAAGAAGGATTAGTTTATC | 57.457 | 33.333 | 0.00 | 0.00 | 0.00 | 1.75 |
5446 | 5561 | 6.040166 | ACAGAAATTGTGGATGGATGATTAGC | 59.960 | 38.462 | 0.00 | 0.00 | 38.99 | 3.09 |
5469 | 5584 | 0.884259 | CATCAACTGGGTCACACGCA | 60.884 | 55.000 | 0.00 | 0.00 | 38.80 | 5.24 |
5503 | 5618 | 4.336993 | TGTGTTGAACTGTTGTAACATCCC | 59.663 | 41.667 | 17.51 | 9.57 | 38.41 | 3.85 |
5569 | 5684 | 5.982465 | TTTAAAATTGGCTTGTGTTGCTC | 57.018 | 34.783 | 0.00 | 0.00 | 0.00 | 4.26 |
5588 | 5703 | 7.276658 | TGTTGCTCGTTGTTTGTAAATTTTGAT | 59.723 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
5736 | 5851 | 3.003793 | GCTTCCTGAATATTCCTTTCGGC | 59.996 | 47.826 | 12.90 | 6.79 | 0.00 | 5.54 |
5750 | 5865 | 4.830600 | TCCTTTCGGCCTTATTTTGAACTT | 59.169 | 37.500 | 0.00 | 0.00 | 0.00 | 2.66 |
5826 | 5944 | 9.919416 | TTCCTCAAAGAATGATATTGGTGAATA | 57.081 | 29.630 | 0.00 | 0.00 | 37.44 | 1.75 |
5877 | 5995 | 9.401058 | TCAACATTTAAAACAAATCCAACCAAT | 57.599 | 25.926 | 0.00 | 0.00 | 0.00 | 3.16 |
5925 | 6043 | 6.601332 | ACTCCTTCAATACAAAAGAGTTGGA | 58.399 | 36.000 | 0.00 | 0.00 | 0.00 | 3.53 |
5980 | 6099 | 7.655732 | CCCGGAGTTGAAAAGAATGTTTTTATT | 59.344 | 33.333 | 0.73 | 0.00 | 0.00 | 1.40 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
2 | 3 | 1.072965 | GCACCCCATCCTCATCCTTAG | 59.927 | 57.143 | 0.00 | 0.00 | 0.00 | 2.18 |
20 | 21 | 9.462174 | CTTGTTTACATCTTAAGAAAATGTGCA | 57.538 | 29.630 | 16.87 | 11.40 | 35.38 | 4.57 |
45 | 46 | 0.474184 | CCCTCCACAGTGGTTTGACT | 59.526 | 55.000 | 19.65 | 0.00 | 39.03 | 3.41 |
57 | 58 | 0.890996 | CCAACTGCAACTCCCTCCAC | 60.891 | 60.000 | 0.00 | 0.00 | 0.00 | 4.02 |
92 | 93 | 1.806542 | CACCCACCTCATCAAGAAACG | 59.193 | 52.381 | 0.00 | 0.00 | 0.00 | 3.60 |
118 | 119 | 4.777896 | TGTTAGGATTCTGGTGACTAGCTT | 59.222 | 41.667 | 0.00 | 0.00 | 0.00 | 3.74 |
139 | 140 | 1.490490 | TCTTTTGTCCTCTGGCAGTGT | 59.510 | 47.619 | 15.27 | 0.00 | 0.00 | 3.55 |
212 | 293 | 3.677284 | CTCAGCGGCTCACCTGCAT | 62.677 | 63.158 | 0.00 | 0.00 | 37.76 | 3.96 |
215 | 296 | 1.447489 | CTTCTCAGCGGCTCACCTG | 60.447 | 63.158 | 0.00 | 0.00 | 0.00 | 4.00 |
238 | 319 | 5.429762 | TCCTAATCCTCTTCACAATGGATGT | 59.570 | 40.000 | 0.00 | 0.00 | 45.34 | 3.06 |
242 | 323 | 5.121811 | CACTCCTAATCCTCTTCACAATGG | 58.878 | 45.833 | 0.00 | 0.00 | 0.00 | 3.16 |
243 | 324 | 4.574013 | GCACTCCTAATCCTCTTCACAATG | 59.426 | 45.833 | 0.00 | 0.00 | 0.00 | 2.82 |
244 | 325 | 4.225942 | TGCACTCCTAATCCTCTTCACAAT | 59.774 | 41.667 | 0.00 | 0.00 | 0.00 | 2.71 |
251 | 332 | 3.107402 | TCACTGCACTCCTAATCCTCT | 57.893 | 47.619 | 0.00 | 0.00 | 0.00 | 3.69 |
257 | 338 | 3.244526 | TGCATCTTTCACTGCACTCCTAA | 60.245 | 43.478 | 0.00 | 0.00 | 43.11 | 2.69 |
271 | 352 | 3.118665 | ACACCAACAAGCTTTGCATCTTT | 60.119 | 39.130 | 0.00 | 0.00 | 0.00 | 2.52 |
281 | 362 | 2.435372 | TTTCCTCACACCAACAAGCT | 57.565 | 45.000 | 0.00 | 0.00 | 0.00 | 3.74 |
293 | 374 | 6.826231 | TGGCATCGTTATAGAATTTTTCCTCA | 59.174 | 34.615 | 0.00 | 0.00 | 0.00 | 3.86 |
312 | 393 | 1.834263 | ACCCAACTACTCTCTGGCATC | 59.166 | 52.381 | 0.00 | 0.00 | 0.00 | 3.91 |
317 | 398 | 4.087182 | TGAAGGTACCCAACTACTCTCTG | 58.913 | 47.826 | 8.74 | 0.00 | 0.00 | 3.35 |
332 | 413 | 4.623932 | AGTGCATTCTGTTCTGAAGGTA | 57.376 | 40.909 | 0.00 | 0.08 | 31.33 | 3.08 |
337 | 418 | 9.102757 | GATAATCTTTAGTGCATTCTGTTCTGA | 57.897 | 33.333 | 0.00 | 0.00 | 0.00 | 3.27 |
341 | 422 | 8.554528 | CGATGATAATCTTTAGTGCATTCTGTT | 58.445 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
362 | 443 | 6.870439 | GTCATCATTCATACTTCCATCGATGA | 59.130 | 38.462 | 26.86 | 10.02 | 35.59 | 2.92 |
366 | 447 | 5.545588 | AGGTCATCATTCATACTTCCATCG | 58.454 | 41.667 | 0.00 | 0.00 | 0.00 | 3.84 |
384 | 465 | 2.237143 | CCATCCTTCTGTTGCTAGGTCA | 59.763 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
386 | 467 | 1.561542 | CCCATCCTTCTGTTGCTAGGT | 59.438 | 52.381 | 0.00 | 0.00 | 0.00 | 3.08 |
398 | 481 | 2.820178 | GGACAATGAAACCCCATCCTT | 58.180 | 47.619 | 0.00 | 0.00 | 0.00 | 3.36 |
468 | 551 | 1.555075 | GCATGTAGAGGGTCTTGGACA | 59.445 | 52.381 | 0.00 | 0.00 | 33.68 | 4.02 |
498 | 581 | 1.339929 | TGCAAGCTCTCAAGACACGTA | 59.660 | 47.619 | 0.00 | 0.00 | 0.00 | 3.57 |
499 | 582 | 0.104855 | TGCAAGCTCTCAAGACACGT | 59.895 | 50.000 | 0.00 | 0.00 | 0.00 | 4.49 |
532 | 615 | 3.564644 | ACGTGGACTTCTGATATACCTCG | 59.435 | 47.826 | 0.00 | 0.00 | 39.27 | 4.63 |
534 | 617 | 4.954202 | TCAACGTGGACTTCTGATATACCT | 59.046 | 41.667 | 0.00 | 0.00 | 0.00 | 3.08 |
573 | 656 | 1.066257 | CCAAAGCGCTTGCACAAGT | 59.934 | 52.632 | 25.80 | 2.25 | 42.66 | 3.16 |
594 | 677 | 6.387041 | TTTATCGTCATATCTTGGTCGTCT | 57.613 | 37.500 | 0.00 | 0.00 | 0.00 | 4.18 |
610 | 693 | 9.265901 | CTCCTTGAAGATAACATCATTTATCGT | 57.734 | 33.333 | 0.00 | 0.00 | 41.53 | 3.73 |
690 | 774 | 6.744537 | GTCTGCAACTTTATTACATGCTCTTG | 59.255 | 38.462 | 0.00 | 0.00 | 37.86 | 3.02 |
743 | 827 | 1.002857 | AAAGCTGGGAATGGTAGCCT | 58.997 | 50.000 | 0.00 | 0.00 | 38.18 | 4.58 |
749 | 833 | 3.017048 | TGACCATAAAGCTGGGAATGG | 57.983 | 47.619 | 12.81 | 12.81 | 43.73 | 3.16 |
767 | 851 | 3.839490 | ACAAAATCAGGGGCATCATTTGA | 59.161 | 39.130 | 0.00 | 0.00 | 32.29 | 2.69 |
774 | 858 | 1.350071 | TTGCACAAAATCAGGGGCAT | 58.650 | 45.000 | 0.00 | 0.00 | 0.00 | 4.40 |
873 | 957 | 8.796475 | GGTATTGTACTACTTCGTCCCATAATA | 58.204 | 37.037 | 0.00 | 0.00 | 0.00 | 0.98 |
880 | 964 | 3.181497 | TGCGGTATTGTACTACTTCGTCC | 60.181 | 47.826 | 0.00 | 0.00 | 0.00 | 4.79 |
885 | 969 | 6.956202 | AGTAGATGCGGTATTGTACTACTT | 57.044 | 37.500 | 0.00 | 0.00 | 36.67 | 2.24 |
894 | 978 | 6.578944 | TGTTATGACAAGTAGATGCGGTATT | 58.421 | 36.000 | 0.00 | 0.00 | 31.49 | 1.89 |
916 | 1000 | 2.505407 | TCTTCGGTGATTGGATGGATGT | 59.495 | 45.455 | 0.00 | 0.00 | 0.00 | 3.06 |
933 | 1017 | 2.863809 | TCTTGGTTTCTTGGCCTCTTC | 58.136 | 47.619 | 3.32 | 0.00 | 0.00 | 2.87 |
1493 | 1579 | 4.307432 | CTCGATGTTATACGAAGCCCAAT | 58.693 | 43.478 | 0.00 | 0.00 | 38.05 | 3.16 |
1643 | 1729 | 0.100146 | CGGACGGAGGTAGTGCTAAC | 59.900 | 60.000 | 0.00 | 0.00 | 0.00 | 2.34 |
1648 | 1734 | 0.822164 | AATTCCGGACGGAGGTAGTG | 59.178 | 55.000 | 13.64 | 0.00 | 46.06 | 2.74 |
1720 | 1806 | 6.137794 | TCCAAAATTACTTGTCGCTCAAAA | 57.862 | 33.333 | 0.00 | 0.00 | 35.48 | 2.44 |
1740 | 1826 | 0.030807 | TCTCATGCTCCCTCCATCCA | 60.031 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2029 | 2115 | 2.931105 | TTAGCGTCCTGGCCCCAA | 60.931 | 61.111 | 0.00 | 0.00 | 0.00 | 4.12 |
2152 | 2238 | 2.093973 | AGGTGCATAGAAACAGGACTCG | 60.094 | 50.000 | 0.00 | 0.00 | 0.00 | 4.18 |
2199 | 2285 | 9.988815 | CCTACATTCTTGTAACTCTTATGCTAT | 57.011 | 33.333 | 0.00 | 0.00 | 37.86 | 2.97 |
2200 | 2286 | 8.421784 | CCCTACATTCTTGTAACTCTTATGCTA | 58.578 | 37.037 | 0.00 | 0.00 | 37.86 | 3.49 |
2233 | 2321 | 7.165485 | TGCAACTATTTCTGTAACTGGTACAT | 58.835 | 34.615 | 5.94 | 0.00 | 41.93 | 2.29 |
2243 | 2331 | 5.009631 | AGCCACATTGCAACTATTTCTGTA | 58.990 | 37.500 | 0.00 | 0.00 | 0.00 | 2.74 |
2250 | 2338 | 5.300286 | GGATTTAGAGCCACATTGCAACTAT | 59.700 | 40.000 | 0.00 | 0.00 | 0.00 | 2.12 |
2335 | 2423 | 9.492730 | AAAAGGAATGGACATAATAGGAACAAT | 57.507 | 29.630 | 0.00 | 0.00 | 0.00 | 2.71 |
2337 | 2425 | 8.748412 | CAAAAAGGAATGGACATAATAGGAACA | 58.252 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
2338 | 2426 | 8.966868 | TCAAAAAGGAATGGACATAATAGGAAC | 58.033 | 33.333 | 0.00 | 0.00 | 0.00 | 3.62 |
2339 | 2427 | 9.540538 | TTCAAAAAGGAATGGACATAATAGGAA | 57.459 | 29.630 | 0.00 | 0.00 | 0.00 | 3.36 |
2340 | 2428 | 9.713684 | ATTCAAAAAGGAATGGACATAATAGGA | 57.286 | 29.630 | 0.00 | 0.00 | 36.20 | 2.94 |
2341 | 2429 | 9.754382 | CATTCAAAAAGGAATGGACATAATAGG | 57.246 | 33.333 | 7.78 | 0.00 | 46.58 | 2.57 |
2391 | 2479 | 4.456911 | CACAGCAAGAACAATAGACCATGT | 59.543 | 41.667 | 0.00 | 0.00 | 0.00 | 3.21 |
2394 | 2482 | 3.411446 | CCACAGCAAGAACAATAGACCA | 58.589 | 45.455 | 0.00 | 0.00 | 0.00 | 4.02 |
2831 | 2919 | 4.498009 | GCAGTGTGTGAGTATTTGCTTTGT | 60.498 | 41.667 | 0.00 | 0.00 | 0.00 | 2.83 |
2951 | 3040 | 8.999431 | ACAATAATCAGTAACGACAAATGAAGT | 58.001 | 29.630 | 0.00 | 0.00 | 0.00 | 3.01 |
2952 | 3041 | 9.825972 | AACAATAATCAGTAACGACAAATGAAG | 57.174 | 29.630 | 0.00 | 0.00 | 0.00 | 3.02 |
2962 | 3051 | 7.381139 | AGCAAAAACCAACAATAATCAGTAACG | 59.619 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
3095 | 3205 | 6.719370 | TCAACCTACTAAACAAGGCAATCAAT | 59.281 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
3235 | 3345 | 2.221169 | TGAGCAGAAACATCCACACAC | 58.779 | 47.619 | 0.00 | 0.00 | 0.00 | 3.82 |
3304 | 3416 | 1.696884 | GCTTTGGGGGAACAAAATCCA | 59.303 | 47.619 | 0.00 | 0.00 | 41.55 | 3.41 |
3364 | 3477 | 8.808092 | AGGTATCACTTATCTAGCATTTCTACC | 58.192 | 37.037 | 0.00 | 0.00 | 0.00 | 3.18 |
3445 | 3558 | 5.778750 | ACCACCGTTATATATAAGGCTCACT | 59.221 | 40.000 | 16.39 | 0.04 | 0.00 | 3.41 |
3458 | 3571 | 2.500910 | ACCGATGGAAACCACCGTTATA | 59.499 | 45.455 | 3.85 | 0.00 | 39.24 | 0.98 |
3569 | 3684 | 3.123790 | TCACGTTTAGTTGTGTGTGTGTG | 59.876 | 43.478 | 0.00 | 0.00 | 37.38 | 3.82 |
3571 | 3686 | 4.530094 | ATCACGTTTAGTTGTGTGTGTG | 57.470 | 40.909 | 0.00 | 0.00 | 37.38 | 3.82 |
3573 | 3688 | 5.233476 | ACTGTATCACGTTTAGTTGTGTGTG | 59.767 | 40.000 | 0.00 | 0.00 | 37.38 | 3.82 |
3767 | 3882 | 4.278170 | TGCAAACCTCAAACATAAGTCCAG | 59.722 | 41.667 | 0.00 | 0.00 | 0.00 | 3.86 |
3807 | 3922 | 4.678509 | ATGCAACCGTTGTTATGTACAG | 57.321 | 40.909 | 12.77 | 0.00 | 38.19 | 2.74 |
3860 | 3975 | 8.894409 | TCGCAATAAATCAGAACAAACATTAG | 57.106 | 30.769 | 0.00 | 0.00 | 0.00 | 1.73 |
3990 | 4105 | 2.161855 | CAATTGCTGCCAGGTAAGTGA | 58.838 | 47.619 | 0.00 | 0.00 | 30.83 | 3.41 |
4313 | 4428 | 0.103026 | TGCCAGATCGAAGTCCATCG | 59.897 | 55.000 | 0.00 | 0.00 | 44.04 | 3.84 |
4347 | 4462 | 2.279173 | AGGCAAAGGTCCAGTATTCCT | 58.721 | 47.619 | 0.00 | 0.00 | 0.00 | 3.36 |
4350 | 4465 | 3.690460 | CTGAAGGCAAAGGTCCAGTATT | 58.310 | 45.455 | 0.00 | 0.00 | 0.00 | 1.89 |
4451 | 4566 | 3.340814 | AACAGCCAGACATCACTAAGG | 57.659 | 47.619 | 0.00 | 0.00 | 0.00 | 2.69 |
5217 | 5332 | 8.564574 | TGGTATTGACAGACATTCTTTGTTAAC | 58.435 | 33.333 | 0.00 | 0.00 | 39.18 | 2.01 |
5249 | 5364 | 4.744795 | TCAGAGGGAGTAGCAATCTTTC | 57.255 | 45.455 | 0.00 | 0.00 | 0.00 | 2.62 |
5282 | 5397 | 6.634805 | ACGATAATGAGAAGTCATCACAAGT | 58.365 | 36.000 | 0.00 | 0.00 | 43.04 | 3.16 |
5283 | 5398 | 7.063898 | ACAACGATAATGAGAAGTCATCACAAG | 59.936 | 37.037 | 0.00 | 0.00 | 43.04 | 3.16 |
5284 | 5399 | 6.873605 | ACAACGATAATGAGAAGTCATCACAA | 59.126 | 34.615 | 0.00 | 0.00 | 43.04 | 3.33 |
5304 | 5419 | 9.543018 | GATAAACTAATCCTTCTTTTCACAACG | 57.457 | 33.333 | 0.00 | 0.00 | 0.00 | 4.10 |
5361 | 5476 | 9.002600 | GGTGCATACTAATCATCAATTATGTCA | 57.997 | 33.333 | 0.00 | 0.00 | 36.89 | 3.58 |
5362 | 5477 | 9.002600 | TGGTGCATACTAATCATCAATTATGTC | 57.997 | 33.333 | 0.00 | 0.00 | 36.89 | 3.06 |
5363 | 5478 | 8.922931 | TGGTGCATACTAATCATCAATTATGT | 57.077 | 30.769 | 0.00 | 0.00 | 36.89 | 2.29 |
5364 | 5479 | 9.999009 | GATGGTGCATACTAATCATCAATTATG | 57.001 | 33.333 | 0.00 | 0.00 | 36.88 | 1.90 |
5365 | 5480 | 9.970553 | AGATGGTGCATACTAATCATCAATTAT | 57.029 | 29.630 | 0.00 | 0.00 | 34.98 | 1.28 |
5366 | 5481 | 9.223099 | CAGATGGTGCATACTAATCATCAATTA | 57.777 | 33.333 | 0.00 | 0.00 | 34.98 | 1.40 |
5367 | 5482 | 7.176165 | CCAGATGGTGCATACTAATCATCAATT | 59.824 | 37.037 | 0.00 | 0.00 | 34.98 | 2.32 |
5368 | 5483 | 6.657966 | CCAGATGGTGCATACTAATCATCAAT | 59.342 | 38.462 | 0.00 | 0.00 | 34.98 | 2.57 |
5369 | 5484 | 5.999600 | CCAGATGGTGCATACTAATCATCAA | 59.000 | 40.000 | 0.00 | 0.00 | 34.98 | 2.57 |
5370 | 5485 | 5.513614 | CCCAGATGGTGCATACTAATCATCA | 60.514 | 44.000 | 0.00 | 0.00 | 34.98 | 3.07 |
5371 | 5486 | 4.940046 | CCCAGATGGTGCATACTAATCATC | 59.060 | 45.833 | 0.00 | 0.00 | 33.34 | 2.92 |
5372 | 5487 | 4.263639 | CCCCAGATGGTGCATACTAATCAT | 60.264 | 45.833 | 0.00 | 0.00 | 0.00 | 2.45 |
5373 | 5488 | 3.072915 | CCCCAGATGGTGCATACTAATCA | 59.927 | 47.826 | 0.00 | 0.00 | 0.00 | 2.57 |
5374 | 5489 | 3.679389 | CCCCAGATGGTGCATACTAATC | 58.321 | 50.000 | 0.00 | 0.00 | 0.00 | 1.75 |
5375 | 5490 | 2.224867 | GCCCCAGATGGTGCATACTAAT | 60.225 | 50.000 | 1.08 | 0.00 | 32.38 | 1.73 |
5376 | 5491 | 1.142870 | GCCCCAGATGGTGCATACTAA | 59.857 | 52.381 | 1.08 | 0.00 | 32.38 | 2.24 |
5417 | 5532 | 4.111255 | TCCATCCACAATTTCTGTCCAA | 57.889 | 40.909 | 0.00 | 0.00 | 35.47 | 3.53 |
5446 | 5561 | 1.200716 | GTGTGACCCAGTTGATGCATG | 59.799 | 52.381 | 2.46 | 0.00 | 0.00 | 4.06 |
5452 | 5567 | 0.813610 | CTTGCGTGTGACCCAGTTGA | 60.814 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
5455 | 5570 | 2.111043 | CCTTGCGTGTGACCCAGT | 59.889 | 61.111 | 0.00 | 0.00 | 0.00 | 4.00 |
5469 | 5584 | 3.067180 | CAGTTCAACACAACATGCTCCTT | 59.933 | 43.478 | 0.00 | 0.00 | 0.00 | 3.36 |
5545 | 5660 | 6.292811 | CGAGCAACACAAGCCAATTTTAAATT | 60.293 | 34.615 | 0.00 | 0.00 | 0.00 | 1.82 |
5625 | 5740 | 5.757099 | AAGTCCTTTTATTCCCTCTCGAA | 57.243 | 39.130 | 0.00 | 0.00 | 0.00 | 3.71 |
5627 | 5742 | 4.876679 | GGAAAGTCCTTTTATTCCCTCTCG | 59.123 | 45.833 | 0.00 | 0.00 | 36.21 | 4.04 |
5701 | 5816 | 6.872585 | ATTCAGGAAGCCATTTTTATTCCA | 57.127 | 33.333 | 5.68 | 0.00 | 43.04 | 3.53 |
5880 | 5998 | 8.826765 | AGGAGTCATATTACCTTCTCTCAAAAA | 58.173 | 33.333 | 0.00 | 0.00 | 0.00 | 1.94 |
5881 | 5999 | 8.380742 | AGGAGTCATATTACCTTCTCTCAAAA | 57.619 | 34.615 | 0.00 | 0.00 | 0.00 | 2.44 |
5882 | 6000 | 7.979786 | AGGAGTCATATTACCTTCTCTCAAA | 57.020 | 36.000 | 0.00 | 0.00 | 0.00 | 2.69 |
5905 | 6023 | 9.918630 | ATCATTTCCAACTCTTTTGTATTGAAG | 57.081 | 29.630 | 0.00 | 0.00 | 0.00 | 3.02 |
5955 | 6073 | 8.587952 | AATAAAAACATTCTTTTCAACTCCGG | 57.412 | 30.769 | 0.00 | 0.00 | 31.15 | 5.14 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.