Multiple sequence alignment - TraesCS7A01G291700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G291700 chr7A 100.000 6824 0 0 1 6824 359047454 359054277 0.000000e+00 12602.0
1 TraesCS7A01G291700 chr7A 91.566 83 5 2 4717 4798 359052251 359052170 5.590000e-21 113.0
2 TraesCS7A01G291700 chr7D 97.186 5792 124 19 1044 6809 306462433 306456655 0.000000e+00 9756.0
3 TraesCS7A01G291700 chr7D 92.966 1052 67 7 1 1051 306477745 306476700 0.000000e+00 1526.0
4 TraesCS7A01G291700 chr7D 91.566 83 5 2 4717 4798 306458668 306458749 5.590000e-21 113.0
5 TraesCS7A01G291700 chr7B 96.709 4497 99 16 1404 5881 282328832 282333298 0.000000e+00 7439.0
6 TraesCS7A01G291700 chr7B 87.925 588 60 6 578 1163 282328259 282328837 0.000000e+00 682.0
7 TraesCS7A01G291700 chr7B 86.562 573 52 11 1 562 282327637 282328195 5.850000e-170 608.0
8 TraesCS7A01G291700 chr7B 96.765 340 11 0 6032 6371 282333335 282333674 9.930000e-158 568.0
9 TraesCS7A01G291700 chr7B 91.029 379 20 3 6431 6809 282334037 282334401 3.670000e-137 499.0
10 TraesCS7A01G291700 chr7B 91.566 83 5 2 4717 4798 282332205 282332124 5.590000e-21 113.0
11 TraesCS7A01G291700 chr2B 87.209 344 36 6 6253 6590 164903516 164903175 1.070000e-102 385.0
12 TraesCS7A01G291700 chr2B 85.075 134 18 2 1155 1288 739729343 739729474 1.190000e-27 135.0
13 TraesCS7A01G291700 chr2B 92.683 82 1 5 4718 4796 693753288 693753367 5.590000e-21 113.0
14 TraesCS7A01G291700 chr2B 88.889 81 8 1 3 82 110813396 110813316 1.570000e-16 99.0
15 TraesCS7A01G291700 chr2B 76.879 173 35 5 2919 3088 65485992 65485822 7.290000e-15 93.5
16 TraesCS7A01G291700 chr2A 87.209 344 35 7 6253 6590 115715437 115715097 3.860000e-102 383.0
17 TraesCS7A01G291700 chr2D 86.087 345 37 8 6253 6590 114519849 114519509 1.810000e-95 361.0
18 TraesCS7A01G291700 chr2D 89.024 82 7 2 2 81 75764456 75764537 4.350000e-17 100.0
19 TraesCS7A01G291700 chr1D 81.818 319 45 7 6253 6567 160423151 160422842 8.780000e-64 255.0
20 TraesCS7A01G291700 chr3A 93.827 81 1 4 4720 4798 430526505 430526427 1.200000e-22 119.0
21 TraesCS7A01G291700 chr3A 91.781 73 5 1 9 80 36873501 36873573 4.350000e-17 100.0
22 TraesCS7A01G291700 chr3A 87.952 83 9 1 1 82 125605549 125605467 5.630000e-16 97.1
23 TraesCS7A01G291700 chr5B 92.308 78 4 2 4719 4796 355601227 355601152 7.240000e-20 110.0
24 TraesCS7A01G291700 chr6B 90.244 82 7 1 1 81 355664538 355664619 9.360000e-19 106.0
25 TraesCS7A01G291700 chr6D 87.368 95 4 8 4718 4809 309955221 309955310 1.210000e-17 102.0
26 TraesCS7A01G291700 chr6D 83.696 92 12 2 297 385 464227778 464227869 4.390000e-12 84.2
27 TraesCS7A01G291700 chr6A 89.873 79 7 1 9 86 247014515 247014437 4.350000e-17 100.0
28 TraesCS7A01G291700 chr6A 91.525 59 2 2 3180 3235 32661319 32661261 2.040000e-10 78.7
29 TraesCS7A01G291700 chr6A 87.500 56 1 1 3180 3235 529567064 529567113 7.390000e-05 60.2
30 TraesCS7A01G291700 chr6A 94.444 36 2 0 3200 3235 58774096 58774131 1.000000e-03 56.5
31 TraesCS7A01G291700 chr6A 100.000 29 0 0 3203 3231 498585073 498585045 3.000000e-03 54.7
32 TraesCS7A01G291700 chr4A 89.024 82 8 1 2 82 439116787 439116868 4.350000e-17 100.0
33 TraesCS7A01G291700 chr4A 96.970 33 0 1 3203 3235 699895972 699895941 3.000000e-03 54.7
34 TraesCS7A01G291700 chr4B 88.889 81 8 1 2 81 273565219 273565299 1.570000e-16 99.0
35 TraesCS7A01G291700 chr5A 92.105 38 1 2 3203 3238 6676453 6676416 1.200000e-02 52.8
36 TraesCS7A01G291700 chr5A 96.774 31 1 0 3200 3230 6676476 6676506 1.200000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G291700 chr7A 359047454 359054277 6823 False 12602.0 12602 100.000 1 6824 1 chr7A.!!$F1 6823
1 TraesCS7A01G291700 chr7D 306456655 306462433 5778 True 9756.0 9756 97.186 1044 6809 1 chr7D.!!$R1 5765
2 TraesCS7A01G291700 chr7D 306476700 306477745 1045 True 1526.0 1526 92.966 1 1051 1 chr7D.!!$R2 1050
3 TraesCS7A01G291700 chr7B 282327637 282334401 6764 False 1959.2 7439 91.798 1 6809 5 chr7B.!!$F1 6808

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
217 219 0.392998 ACATACCTACCCGACGACGT 60.393 55.000 0.00 0.0 37.88 4.34 F
1018 1080 0.506932 CAACGAACGACGATGCAACT 59.493 50.000 0.00 0.0 45.77 3.16 F
1218 1280 0.172578 TACAAGCATCTGGGTCGTCG 59.827 55.000 0.00 0.0 0.00 5.12 F
1364 1426 0.246635 CCGACGGTCCAGAAGTTCAT 59.753 55.000 5.48 0.0 0.00 2.57 F
2471 2796 0.728542 TCAGCTTATGTGTGCATGCG 59.271 50.000 14.09 0.0 36.58 4.73 F
3937 4263 1.140589 CAGCGGCAACACAACCAAA 59.859 52.632 1.45 0.0 0.00 3.28 F
4519 4860 1.480954 ACACGGAGGACCATGTACATC 59.519 52.381 5.07 0.0 40.96 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1199 1261 0.172578 CGACGACCCAGATGCTTGTA 59.827 55.000 0.00 0.0 0.00 2.41 R
3003 3328 2.107366 CTGGTGGTTTTGTTTCCAGGT 58.893 47.619 0.00 0.0 41.10 4.00 R
3044 3369 3.181528 GCGTTTTCAATCGTATTCGGACA 60.182 43.478 0.00 0.0 37.69 4.02 R
3473 3799 5.843673 TTACATCAGCAAAAACACTTGGA 57.156 34.783 0.00 0.0 0.00 3.53 R
4298 4639 0.940126 CAGCGCACCATTCTGGATAC 59.060 55.000 11.47 0.0 40.96 2.24 R
5435 5782 1.541588 GTTGCTTTCTTCGGCCTTGAT 59.458 47.619 0.00 0.0 0.00 2.57 R
6485 7168 1.805943 GAACCAACCAATTTGCATGGC 59.194 47.619 14.93 0.0 41.89 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 91 1.298190 GACGTATCAGCGACCCGAC 60.298 63.158 0.00 0.00 35.59 4.79
125 127 7.013846 AGAGATTAGAGAGTAGAAACAATCGGG 59.986 40.741 0.00 0.00 0.00 5.14
131 133 5.010282 AGAGTAGAAACAATCGGGCAAATT 58.990 37.500 0.00 0.00 0.00 1.82
217 219 0.392998 ACATACCTACCCGACGACGT 60.393 55.000 0.00 0.00 37.88 4.34
224 226 2.128853 TACCCGACGACGTTGGTGTC 62.129 60.000 28.37 2.92 35.40 3.67
318 324 1.298859 GGTGATTCGTCCTGGTGTGC 61.299 60.000 0.00 0.00 0.00 4.57
351 357 4.684484 TCTCTCTGTACTAGCCGACATA 57.316 45.455 0.00 0.00 0.00 2.29
387 399 8.415192 TCGTTCTAGATTTTTAATACGCACAT 57.585 30.769 0.00 0.00 0.00 3.21
388 400 8.875803 TCGTTCTAGATTTTTAATACGCACATT 58.124 29.630 0.00 0.00 0.00 2.71
392 404 5.960113 AGATTTTTAATACGCACATTGCCA 58.040 33.333 0.00 0.00 41.12 4.92
456 468 3.087370 AGGATGGGCCACTTAGTTTTC 57.913 47.619 9.28 0.00 40.02 2.29
464 476 1.337447 CCACTTAGTTTTCGGGCTCGA 60.337 52.381 3.45 3.45 44.44 4.04
469 481 3.998672 TTTTCGGGCTCGAGGCGT 61.999 61.111 29.95 0.00 46.75 5.68
500 512 2.687566 CTTGCCCTAGGACCGGGT 60.688 66.667 11.48 0.00 43.92 5.28
503 515 1.877672 TTGCCCTAGGACCGGGTCTA 61.878 60.000 25.39 14.66 43.92 2.59
607 667 8.352137 TCACATCCAAAATGACTATGTCAAAT 57.648 30.769 4.46 0.00 45.96 2.32
621 681 9.241317 GACTATGTCAAATATTGCAATGAAAGG 57.759 33.333 22.27 7.75 32.09 3.11
724 785 3.632145 GGGGCATGACGAGAATTACAAAT 59.368 43.478 0.00 0.00 0.00 2.32
795 856 3.565307 AGGAGCACAACAAAAATGAGGA 58.435 40.909 0.00 0.00 0.00 3.71
796 857 3.960102 AGGAGCACAACAAAAATGAGGAA 59.040 39.130 0.00 0.00 0.00 3.36
823 884 9.806448 AAATTGCCCCTAATAAAGAAAAATTGT 57.194 25.926 0.00 0.00 0.00 2.71
882 944 3.058160 GCCACGATGCTTGCCACT 61.058 61.111 0.00 0.00 0.00 4.00
884 946 1.968017 CCACGATGCTTGCCACTGT 60.968 57.895 0.00 0.00 0.00 3.55
891 953 1.163420 TGCTTGCCACTGTAACACCG 61.163 55.000 0.00 0.00 0.00 4.94
918 980 6.624352 AAATCGCAGATATGCTATTGTGTT 57.376 33.333 12.22 0.00 45.12 3.32
922 984 5.817296 TCGCAGATATGCTATTGTGTTCTTT 59.183 36.000 11.09 0.00 0.00 2.52
931 993 2.975799 GTGTTCTTTCCCGCCGCA 60.976 61.111 0.00 0.00 0.00 5.69
952 1014 3.503363 CAGTGACTACATGCAACCACATT 59.497 43.478 0.00 0.00 0.00 2.71
974 1036 0.981277 AACCCTACCCCTCATCACCG 60.981 60.000 0.00 0.00 0.00 4.94
976 1038 0.981277 CCCTACCCCTCATCACCGTT 60.981 60.000 0.00 0.00 0.00 4.44
1018 1080 0.506932 CAACGAACGACGATGCAACT 59.493 50.000 0.00 0.00 45.77 3.16
1019 1081 0.506932 AACGAACGACGATGCAACTG 59.493 50.000 0.00 0.00 45.77 3.16
1034 1096 0.748005 AACTGCTGCCAAAGTGACGT 60.748 50.000 0.00 0.00 0.00 4.34
1068 1130 7.578458 TTCTTTATTGGGGGAGTAAGTAGTT 57.422 36.000 0.00 0.00 0.00 2.24
1107 1169 7.067737 TCGTTTGGTACATATACATGAGTGAGA 59.932 37.037 0.00 0.00 39.30 3.27
1156 1218 4.090588 GACCGGGATTGTGCGGGA 62.091 66.667 6.32 0.00 32.60 5.14
1157 1219 4.096003 ACCGGGATTGTGCGGGAG 62.096 66.667 6.32 0.00 32.60 4.30
1158 1220 3.781307 CCGGGATTGTGCGGGAGA 61.781 66.667 0.00 0.00 29.69 3.71
1159 1221 2.267642 CGGGATTGTGCGGGAGAA 59.732 61.111 0.00 0.00 0.00 2.87
1160 1222 2.106683 CGGGATTGTGCGGGAGAAC 61.107 63.158 0.00 0.00 39.54 3.01
1167 1229 2.380084 TGTGCGGGAGAACAGTAATC 57.620 50.000 0.00 0.00 45.45 1.75
1168 1230 1.899814 TGTGCGGGAGAACAGTAATCT 59.100 47.619 0.00 0.00 45.45 2.40
1169 1231 2.271800 GTGCGGGAGAACAGTAATCTG 58.728 52.381 0.00 0.00 46.18 2.90
1170 1232 1.207089 TGCGGGAGAACAGTAATCTGG 59.793 52.381 0.47 0.00 45.14 3.86
1171 1233 1.207329 GCGGGAGAACAGTAATCTGGT 59.793 52.381 0.47 0.00 45.17 4.00
1172 1234 2.893637 CGGGAGAACAGTAATCTGGTG 58.106 52.381 0.47 0.00 42.23 4.17
1173 1235 2.633488 GGGAGAACAGTAATCTGGTGC 58.367 52.381 0.47 0.00 42.23 5.01
1174 1236 2.237392 GGGAGAACAGTAATCTGGTGCT 59.763 50.000 0.47 0.00 42.23 4.40
1175 1237 3.451178 GGGAGAACAGTAATCTGGTGCTA 59.549 47.826 0.47 0.00 42.23 3.49
1176 1238 4.434520 GGAGAACAGTAATCTGGTGCTAC 58.565 47.826 0.47 0.00 42.23 3.58
1177 1239 4.434520 GAGAACAGTAATCTGGTGCTACC 58.565 47.826 0.47 0.00 42.23 3.18
1178 1240 2.961526 ACAGTAATCTGGTGCTACCG 57.038 50.000 0.47 0.00 42.58 4.02
1179 1241 2.453521 ACAGTAATCTGGTGCTACCGA 58.546 47.619 0.47 0.00 42.58 4.69
1180 1242 2.427453 ACAGTAATCTGGTGCTACCGAG 59.573 50.000 0.47 0.00 42.58 4.63
1181 1243 2.688446 CAGTAATCTGGTGCTACCGAGA 59.312 50.000 0.00 0.00 42.58 4.04
1182 1244 2.688958 AGTAATCTGGTGCTACCGAGAC 59.311 50.000 0.00 0.00 42.58 3.36
1183 1245 1.853963 AATCTGGTGCTACCGAGACT 58.146 50.000 0.00 0.00 42.58 3.24
1184 1246 1.853963 ATCTGGTGCTACCGAGACTT 58.146 50.000 0.00 0.00 42.58 3.01
1185 1247 2.502142 TCTGGTGCTACCGAGACTTA 57.498 50.000 0.00 0.00 42.58 2.24
1186 1248 2.799017 TCTGGTGCTACCGAGACTTAA 58.201 47.619 0.00 0.00 42.58 1.85
1187 1249 3.159472 TCTGGTGCTACCGAGACTTAAA 58.841 45.455 0.00 0.00 42.58 1.52
1188 1250 3.767673 TCTGGTGCTACCGAGACTTAAAT 59.232 43.478 0.00 0.00 42.58 1.40
1189 1251 3.857052 TGGTGCTACCGAGACTTAAATG 58.143 45.455 0.00 0.00 42.58 2.32
1190 1252 2.608090 GGTGCTACCGAGACTTAAATGC 59.392 50.000 0.00 0.00 0.00 3.56
1191 1253 3.522553 GTGCTACCGAGACTTAAATGCT 58.477 45.455 0.00 0.00 0.00 3.79
1192 1254 4.441079 GGTGCTACCGAGACTTAAATGCTA 60.441 45.833 0.00 0.00 0.00 3.49
1193 1255 4.503370 GTGCTACCGAGACTTAAATGCTAC 59.497 45.833 0.00 0.00 0.00 3.58
1194 1256 4.049869 GCTACCGAGACTTAAATGCTACC 58.950 47.826 0.00 0.00 0.00 3.18
1195 1257 3.160777 ACCGAGACTTAAATGCTACCG 57.839 47.619 0.00 0.00 0.00 4.02
1196 1258 2.494870 ACCGAGACTTAAATGCTACCGT 59.505 45.455 0.00 0.00 0.00 4.83
1197 1259 2.858344 CCGAGACTTAAATGCTACCGTG 59.142 50.000 0.00 0.00 0.00 4.94
1198 1260 3.428452 CCGAGACTTAAATGCTACCGTGA 60.428 47.826 0.00 0.00 0.00 4.35
1199 1261 4.360563 CGAGACTTAAATGCTACCGTGAT 58.639 43.478 0.00 0.00 0.00 3.06
1200 1262 5.506815 CCGAGACTTAAATGCTACCGTGATA 60.507 44.000 0.00 0.00 0.00 2.15
1201 1263 5.398711 CGAGACTTAAATGCTACCGTGATAC 59.601 44.000 0.00 0.00 0.00 2.24
1202 1264 6.216801 AGACTTAAATGCTACCGTGATACA 57.783 37.500 0.00 0.00 0.00 2.29
1203 1265 6.636705 AGACTTAAATGCTACCGTGATACAA 58.363 36.000 0.00 0.00 0.00 2.41
1204 1266 6.757010 AGACTTAAATGCTACCGTGATACAAG 59.243 38.462 0.00 0.00 0.00 3.16
1205 1267 5.293569 ACTTAAATGCTACCGTGATACAAGC 59.706 40.000 0.00 0.00 0.00 4.01
1206 1268 2.979814 ATGCTACCGTGATACAAGCA 57.020 45.000 0.00 0.00 46.30 3.91
1207 1269 2.979814 TGCTACCGTGATACAAGCAT 57.020 45.000 0.00 0.00 38.22 3.79
1208 1270 2.821546 TGCTACCGTGATACAAGCATC 58.178 47.619 0.00 0.00 38.22 3.91
1209 1271 2.430694 TGCTACCGTGATACAAGCATCT 59.569 45.455 0.00 0.00 38.22 2.90
1210 1272 2.797156 GCTACCGTGATACAAGCATCTG 59.203 50.000 0.00 0.00 33.38 2.90
1211 1273 2.315925 ACCGTGATACAAGCATCTGG 57.684 50.000 0.00 0.00 0.00 3.86
1212 1274 1.134401 ACCGTGATACAAGCATCTGGG 60.134 52.381 0.00 0.00 0.00 4.45
1213 1275 1.134401 CCGTGATACAAGCATCTGGGT 60.134 52.381 0.00 0.00 0.00 4.51
1214 1276 2.205074 CGTGATACAAGCATCTGGGTC 58.795 52.381 0.00 0.00 0.00 4.46
1215 1277 2.205074 GTGATACAAGCATCTGGGTCG 58.795 52.381 0.00 0.00 0.00 4.79
1216 1278 1.831106 TGATACAAGCATCTGGGTCGT 59.169 47.619 0.00 0.00 0.00 4.34
1217 1279 2.159099 TGATACAAGCATCTGGGTCGTC 60.159 50.000 0.00 0.00 0.00 4.20
1218 1280 0.172578 TACAAGCATCTGGGTCGTCG 59.827 55.000 0.00 0.00 0.00 5.12
1219 1281 1.811266 CAAGCATCTGGGTCGTCGG 60.811 63.158 0.00 0.00 0.00 4.79
1220 1282 1.982395 AAGCATCTGGGTCGTCGGA 60.982 57.895 0.00 0.00 0.00 4.55
1221 1283 1.330655 AAGCATCTGGGTCGTCGGAT 61.331 55.000 0.00 0.00 33.34 4.18
1222 1284 1.144057 GCATCTGGGTCGTCGGATT 59.856 57.895 0.00 0.00 30.88 3.01
1223 1285 0.876342 GCATCTGGGTCGTCGGATTC 60.876 60.000 0.00 0.00 30.88 2.52
1224 1286 0.747255 CATCTGGGTCGTCGGATTCT 59.253 55.000 0.00 0.00 30.88 2.40
1225 1287 1.137086 CATCTGGGTCGTCGGATTCTT 59.863 52.381 0.00 0.00 30.88 2.52
1226 1288 2.133281 TCTGGGTCGTCGGATTCTTA 57.867 50.000 0.00 0.00 0.00 2.10
1227 1289 2.022195 TCTGGGTCGTCGGATTCTTAG 58.978 52.381 0.00 0.00 0.00 2.18
1228 1290 2.022195 CTGGGTCGTCGGATTCTTAGA 58.978 52.381 0.00 0.00 0.00 2.10
1229 1291 2.623889 CTGGGTCGTCGGATTCTTAGAT 59.376 50.000 0.00 0.00 0.00 1.98
1230 1292 2.621998 TGGGTCGTCGGATTCTTAGATC 59.378 50.000 0.00 0.00 0.00 2.75
1231 1293 2.350580 GGGTCGTCGGATTCTTAGATCG 60.351 54.545 0.00 0.00 0.00 3.69
1232 1294 2.350580 GGTCGTCGGATTCTTAGATCGG 60.351 54.545 0.00 0.00 0.00 4.18
1233 1295 2.547211 GTCGTCGGATTCTTAGATCGGA 59.453 50.000 0.00 0.00 34.31 4.55
1234 1296 3.188873 GTCGTCGGATTCTTAGATCGGAT 59.811 47.826 0.00 0.00 37.59 4.18
1235 1297 3.188667 TCGTCGGATTCTTAGATCGGATG 59.811 47.826 0.00 7.80 40.73 3.51
1236 1298 3.188667 CGTCGGATTCTTAGATCGGATGA 59.811 47.826 0.00 0.00 41.33 2.92
1237 1299 4.477780 GTCGGATTCTTAGATCGGATGAC 58.522 47.826 0.00 0.00 37.59 3.06
1238 1300 4.023107 GTCGGATTCTTAGATCGGATGACA 60.023 45.833 0.00 0.00 37.59 3.58
1239 1301 4.767409 TCGGATTCTTAGATCGGATGACAT 59.233 41.667 0.00 0.00 32.51 3.06
1240 1302 5.243954 TCGGATTCTTAGATCGGATGACATT 59.756 40.000 0.00 0.00 32.51 2.71
1241 1303 5.928839 CGGATTCTTAGATCGGATGACATTT 59.071 40.000 0.00 0.00 0.00 2.32
1242 1304 6.128715 CGGATTCTTAGATCGGATGACATTTG 60.129 42.308 0.00 0.00 0.00 2.32
1243 1305 6.931281 GGATTCTTAGATCGGATGACATTTGA 59.069 38.462 0.00 0.00 0.00 2.69
1244 1306 7.605691 GGATTCTTAGATCGGATGACATTTGAT 59.394 37.037 0.00 3.72 0.00 2.57
1245 1307 9.645059 GATTCTTAGATCGGATGACATTTGATA 57.355 33.333 0.00 0.00 0.00 2.15
1250 1312 9.559732 TTAGATCGGATGACATTTGATAATTGT 57.440 29.630 0.00 0.00 0.00 2.71
1251 1313 8.455903 AGATCGGATGACATTTGATAATTGTT 57.544 30.769 0.00 0.00 0.00 2.83
1252 1314 8.347771 AGATCGGATGACATTTGATAATTGTTG 58.652 33.333 0.00 0.00 0.00 3.33
1253 1315 6.794374 TCGGATGACATTTGATAATTGTTGG 58.206 36.000 0.00 0.00 0.00 3.77
1254 1316 6.601217 TCGGATGACATTTGATAATTGTTGGA 59.399 34.615 0.00 0.00 0.00 3.53
1255 1317 6.692681 CGGATGACATTTGATAATTGTTGGAC 59.307 38.462 0.00 0.00 0.00 4.02
1256 1318 6.980397 GGATGACATTTGATAATTGTTGGACC 59.020 38.462 0.00 0.00 0.00 4.46
1257 1319 6.279513 TGACATTTGATAATTGTTGGACCC 57.720 37.500 0.00 0.00 0.00 4.46
1258 1320 5.105957 TGACATTTGATAATTGTTGGACCCG 60.106 40.000 0.00 0.00 0.00 5.28
1259 1321 3.859411 TTTGATAATTGTTGGACCCGC 57.141 42.857 0.00 0.00 0.00 6.13
1260 1322 2.799126 TGATAATTGTTGGACCCGCT 57.201 45.000 0.00 0.00 0.00 5.52
1261 1323 2.364632 TGATAATTGTTGGACCCGCTG 58.635 47.619 0.00 0.00 0.00 5.18
1262 1324 1.676006 GATAATTGTTGGACCCGCTGG 59.324 52.381 0.00 0.00 37.80 4.85
1263 1325 0.693622 TAATTGTTGGACCCGCTGGA 59.306 50.000 0.00 0.00 34.81 3.86
1264 1326 0.893727 AATTGTTGGACCCGCTGGAC 60.894 55.000 0.00 0.00 34.81 4.02
1265 1327 2.764637 ATTGTTGGACCCGCTGGACC 62.765 60.000 8.69 8.69 45.57 4.46
1266 1328 3.637273 GTTGGACCCGCTGGACCT 61.637 66.667 15.90 0.00 45.57 3.85
1267 1329 2.120940 TTGGACCCGCTGGACCTA 59.879 61.111 15.90 6.48 45.57 3.08
1268 1330 2.288025 TTGGACCCGCTGGACCTAC 61.288 63.158 15.90 0.00 45.57 3.18
1269 1331 3.834799 GGACCCGCTGGACCTACG 61.835 72.222 8.37 0.00 42.50 3.51
1270 1332 4.509737 GACCCGCTGGACCTACGC 62.510 72.222 0.00 0.00 34.81 4.42
1275 1337 2.511600 GCTGGACCTACGCGCAAT 60.512 61.111 5.73 0.00 0.00 3.56
1276 1338 2.106683 GCTGGACCTACGCGCAATT 61.107 57.895 5.73 0.00 0.00 2.32
1277 1339 1.644786 GCTGGACCTACGCGCAATTT 61.645 55.000 5.73 0.00 0.00 1.82
1278 1340 0.802494 CTGGACCTACGCGCAATTTT 59.198 50.000 5.73 0.00 0.00 1.82
1279 1341 1.199097 CTGGACCTACGCGCAATTTTT 59.801 47.619 5.73 0.00 0.00 1.94
1280 1342 1.068885 TGGACCTACGCGCAATTTTTG 60.069 47.619 5.73 0.00 0.00 2.44
1281 1343 1.613270 GACCTACGCGCAATTTTTGG 58.387 50.000 5.73 0.00 0.00 3.28
1282 1344 1.198178 GACCTACGCGCAATTTTTGGA 59.802 47.619 5.73 0.00 0.00 3.53
1283 1345 1.068816 ACCTACGCGCAATTTTTGGAC 60.069 47.619 5.73 0.00 0.00 4.02
1284 1346 1.199097 CCTACGCGCAATTTTTGGACT 59.801 47.619 5.73 0.00 0.00 3.85
1285 1347 2.505866 CTACGCGCAATTTTTGGACTC 58.494 47.619 5.73 0.00 0.00 3.36
1286 1348 0.951558 ACGCGCAATTTTTGGACTCT 59.048 45.000 5.73 0.00 0.00 3.24
1287 1349 1.336755 ACGCGCAATTTTTGGACTCTT 59.663 42.857 5.73 0.00 0.00 2.85
1288 1350 2.223711 ACGCGCAATTTTTGGACTCTTT 60.224 40.909 5.73 0.00 0.00 2.52
1289 1351 2.153627 CGCGCAATTTTTGGACTCTTTG 59.846 45.455 8.75 0.00 0.00 2.77
1290 1352 2.476241 GCGCAATTTTTGGACTCTTTGG 59.524 45.455 0.30 0.00 0.00 3.28
1291 1353 3.798548 GCGCAATTTTTGGACTCTTTGGA 60.799 43.478 0.30 0.00 0.00 3.53
1292 1354 4.367450 CGCAATTTTTGGACTCTTTGGAA 58.633 39.130 0.00 0.00 0.00 3.53
1293 1355 4.445385 CGCAATTTTTGGACTCTTTGGAAG 59.555 41.667 0.00 0.00 0.00 3.46
1294 1356 5.600696 GCAATTTTTGGACTCTTTGGAAGA 58.399 37.500 0.00 0.00 35.87 2.87
1295 1357 6.226052 GCAATTTTTGGACTCTTTGGAAGAT 58.774 36.000 0.00 0.00 36.82 2.40
1296 1358 6.707608 GCAATTTTTGGACTCTTTGGAAGATT 59.292 34.615 0.00 0.00 36.82 2.40
1297 1359 7.227314 GCAATTTTTGGACTCTTTGGAAGATTT 59.773 33.333 0.00 0.00 36.82 2.17
1298 1360 9.112725 CAATTTTTGGACTCTTTGGAAGATTTT 57.887 29.630 0.00 0.00 36.82 1.82
1299 1361 9.685276 AATTTTTGGACTCTTTGGAAGATTTTT 57.315 25.926 0.00 0.00 36.82 1.94
1323 1385 8.537049 TTTTTGGAAATATTGCAGAGTCATTG 57.463 30.769 0.00 0.00 30.85 2.82
1324 1386 7.465353 TTTGGAAATATTGCAGAGTCATTGA 57.535 32.000 0.00 0.00 30.85 2.57
1325 1387 6.688637 TGGAAATATTGCAGAGTCATTGAG 57.311 37.500 0.00 0.00 0.00 3.02
1326 1388 6.417258 TGGAAATATTGCAGAGTCATTGAGA 58.583 36.000 0.00 0.00 0.00 3.27
1327 1389 6.885918 TGGAAATATTGCAGAGTCATTGAGAA 59.114 34.615 0.00 0.00 0.00 2.87
1328 1390 7.148188 TGGAAATATTGCAGAGTCATTGAGAAC 60.148 37.037 0.00 0.00 0.00 3.01
1329 1391 6.690194 AATATTGCAGAGTCATTGAGAACC 57.310 37.500 0.00 0.00 0.00 3.62
1330 1392 2.084610 TGCAGAGTCATTGAGAACCG 57.915 50.000 0.00 0.00 0.00 4.44
1331 1393 1.344438 TGCAGAGTCATTGAGAACCGT 59.656 47.619 0.00 0.00 0.00 4.83
1332 1394 1.996191 GCAGAGTCATTGAGAACCGTC 59.004 52.381 0.00 0.00 0.00 4.79
1333 1395 2.611518 CAGAGTCATTGAGAACCGTCC 58.388 52.381 0.00 0.00 0.00 4.79
1334 1396 1.202582 AGAGTCATTGAGAACCGTCCG 59.797 52.381 0.00 0.00 0.00 4.79
1335 1397 1.201647 GAGTCATTGAGAACCGTCCGA 59.798 52.381 0.00 0.00 0.00 4.55
1336 1398 1.825474 AGTCATTGAGAACCGTCCGAT 59.175 47.619 0.00 0.00 0.00 4.18
1337 1399 2.159226 AGTCATTGAGAACCGTCCGATC 60.159 50.000 0.00 0.00 0.00 3.69
1338 1400 2.100197 TCATTGAGAACCGTCCGATCT 58.900 47.619 0.00 0.00 0.00 2.75
1339 1401 2.159240 TCATTGAGAACCGTCCGATCTG 60.159 50.000 0.00 0.00 0.00 2.90
1340 1402 1.541379 TTGAGAACCGTCCGATCTGA 58.459 50.000 0.00 0.00 0.00 3.27
1341 1403 1.541379 TGAGAACCGTCCGATCTGAA 58.459 50.000 0.00 0.00 0.00 3.02
1342 1404 1.890489 TGAGAACCGTCCGATCTGAAA 59.110 47.619 0.00 0.00 0.00 2.69
1343 1405 2.297880 TGAGAACCGTCCGATCTGAAAA 59.702 45.455 0.00 0.00 0.00 2.29
1344 1406 3.056107 TGAGAACCGTCCGATCTGAAAAT 60.056 43.478 0.00 0.00 0.00 1.82
1345 1407 3.522553 AGAACCGTCCGATCTGAAAATC 58.477 45.455 0.00 0.00 0.00 2.17
1346 1408 2.311124 ACCGTCCGATCTGAAAATCC 57.689 50.000 0.00 0.00 0.00 3.01
1347 1409 1.209128 CCGTCCGATCTGAAAATCCG 58.791 55.000 0.00 0.00 0.00 4.18
1348 1410 1.202371 CCGTCCGATCTGAAAATCCGA 60.202 52.381 0.00 0.00 0.00 4.55
1349 1411 1.852895 CGTCCGATCTGAAAATCCGAC 59.147 52.381 0.00 0.00 33.35 4.79
1350 1412 1.852895 GTCCGATCTGAAAATCCGACG 59.147 52.381 0.00 0.00 28.89 5.12
1351 1413 1.202371 TCCGATCTGAAAATCCGACGG 60.202 52.381 7.84 7.84 40.36 4.79
1352 1414 1.470979 CCGATCTGAAAATCCGACGGT 60.471 52.381 14.79 0.00 35.40 4.83
1353 1415 1.852895 CGATCTGAAAATCCGACGGTC 59.147 52.381 14.79 4.41 0.00 4.79
1354 1416 2.202566 GATCTGAAAATCCGACGGTCC 58.797 52.381 14.79 0.64 0.00 4.46
1355 1417 0.970640 TCTGAAAATCCGACGGTCCA 59.029 50.000 14.79 5.20 0.00 4.02
1356 1418 1.067142 TCTGAAAATCCGACGGTCCAG 60.067 52.381 14.79 13.86 0.00 3.86
1357 1419 0.970640 TGAAAATCCGACGGTCCAGA 59.029 50.000 14.79 0.13 0.00 3.86
1358 1420 1.345089 TGAAAATCCGACGGTCCAGAA 59.655 47.619 14.79 0.00 0.00 3.02
1359 1421 2.000447 GAAAATCCGACGGTCCAGAAG 59.000 52.381 14.79 0.00 0.00 2.85
1360 1422 0.974383 AAATCCGACGGTCCAGAAGT 59.026 50.000 14.79 0.00 0.00 3.01
1361 1423 0.974383 AATCCGACGGTCCAGAAGTT 59.026 50.000 14.79 0.00 0.00 2.66
1362 1424 0.531200 ATCCGACGGTCCAGAAGTTC 59.469 55.000 14.79 0.00 0.00 3.01
1363 1425 0.824595 TCCGACGGTCCAGAAGTTCA 60.825 55.000 14.79 0.00 0.00 3.18
1364 1426 0.246635 CCGACGGTCCAGAAGTTCAT 59.753 55.000 5.48 0.00 0.00 2.57
1365 1427 1.475280 CCGACGGTCCAGAAGTTCATA 59.525 52.381 5.48 0.00 0.00 2.15
1366 1428 2.100916 CCGACGGTCCAGAAGTTCATAT 59.899 50.000 5.48 0.00 0.00 1.78
1367 1429 3.372954 CGACGGTCCAGAAGTTCATATC 58.627 50.000 5.50 0.00 0.00 1.63
1368 1430 3.181490 CGACGGTCCAGAAGTTCATATCA 60.181 47.826 5.50 0.00 0.00 2.15
1369 1431 4.113354 GACGGTCCAGAAGTTCATATCAC 58.887 47.826 5.50 0.00 0.00 3.06
1370 1432 3.116300 CGGTCCAGAAGTTCATATCACG 58.884 50.000 5.50 0.00 0.00 4.35
1371 1433 3.458189 GGTCCAGAAGTTCATATCACGG 58.542 50.000 5.50 0.00 0.00 4.94
1372 1434 3.118738 GGTCCAGAAGTTCATATCACGGT 60.119 47.826 5.50 0.00 0.00 4.83
1373 1435 4.098960 GGTCCAGAAGTTCATATCACGGTA 59.901 45.833 5.50 0.00 0.00 4.02
1374 1436 5.282510 GTCCAGAAGTTCATATCACGGTAG 58.717 45.833 5.50 0.00 0.00 3.18
1375 1437 4.051922 CCAGAAGTTCATATCACGGTAGC 58.948 47.826 5.50 0.00 0.00 3.58
1376 1438 4.441495 CCAGAAGTTCATATCACGGTAGCA 60.441 45.833 5.50 0.00 0.00 3.49
1377 1439 4.504461 CAGAAGTTCATATCACGGTAGCAC 59.496 45.833 5.50 0.00 0.00 4.40
1378 1440 3.454371 AGTTCATATCACGGTAGCACC 57.546 47.619 0.00 0.00 34.05 5.01
1379 1441 3.031736 AGTTCATATCACGGTAGCACCT 58.968 45.455 4.21 0.00 35.66 4.00
1380 1442 4.212716 AGTTCATATCACGGTAGCACCTA 58.787 43.478 4.21 0.00 35.66 3.08
1381 1443 4.647853 AGTTCATATCACGGTAGCACCTAA 59.352 41.667 4.21 0.00 35.66 2.69
1382 1444 4.848562 TCATATCACGGTAGCACCTAAG 57.151 45.455 4.21 0.00 35.66 2.18
1383 1445 4.466827 TCATATCACGGTAGCACCTAAGA 58.533 43.478 4.21 0.66 35.66 2.10
1384 1446 5.077564 TCATATCACGGTAGCACCTAAGAT 58.922 41.667 4.21 6.54 35.66 2.40
1385 1447 6.243148 TCATATCACGGTAGCACCTAAGATA 58.757 40.000 4.21 8.01 35.66 1.98
1386 1448 6.374613 TCATATCACGGTAGCACCTAAGATAG 59.625 42.308 4.21 0.00 35.66 2.08
1387 1449 2.621998 TCACGGTAGCACCTAAGATAGC 59.378 50.000 4.21 0.00 35.66 2.97
1388 1450 2.361119 CACGGTAGCACCTAAGATAGCA 59.639 50.000 4.21 0.00 35.66 3.49
1389 1451 2.361438 ACGGTAGCACCTAAGATAGCAC 59.639 50.000 4.21 0.00 35.66 4.40
1390 1452 2.623889 CGGTAGCACCTAAGATAGCACT 59.376 50.000 4.21 0.00 35.66 4.40
1391 1453 3.819337 CGGTAGCACCTAAGATAGCACTA 59.181 47.826 4.21 0.00 35.66 2.74
1392 1454 4.083217 CGGTAGCACCTAAGATAGCACTAG 60.083 50.000 4.21 0.00 35.66 2.57
1393 1455 5.071370 GGTAGCACCTAAGATAGCACTAGA 58.929 45.833 0.00 0.00 34.73 2.43
1394 1456 5.712917 GGTAGCACCTAAGATAGCACTAGAT 59.287 44.000 0.00 0.00 34.73 1.98
1395 1457 6.885376 GGTAGCACCTAAGATAGCACTAGATA 59.115 42.308 0.00 0.00 34.73 1.98
1396 1458 7.558444 GGTAGCACCTAAGATAGCACTAGATAT 59.442 40.741 0.00 0.00 34.73 1.63
1397 1459 8.962679 GTAGCACCTAAGATAGCACTAGATATT 58.037 37.037 0.00 0.00 0.00 1.28
1398 1460 8.429237 AGCACCTAAGATAGCACTAGATATTT 57.571 34.615 0.00 0.00 0.00 1.40
1399 1461 8.875168 AGCACCTAAGATAGCACTAGATATTTT 58.125 33.333 0.00 0.00 0.00 1.82
1400 1462 9.145865 GCACCTAAGATAGCACTAGATATTTTC 57.854 37.037 0.00 0.00 0.00 2.29
1401 1463 9.646427 CACCTAAGATAGCACTAGATATTTTCC 57.354 37.037 0.00 0.00 0.00 3.13
1402 1464 8.817876 ACCTAAGATAGCACTAGATATTTTCCC 58.182 37.037 0.00 0.00 0.00 3.97
1473 1794 3.471806 GGCCGGACCTCTTCCTCC 61.472 72.222 5.05 0.00 43.25 4.30
1609 1931 2.208132 TTCTCTCCTGCTTCGTCTCT 57.792 50.000 0.00 0.00 0.00 3.10
1843 2165 2.098233 CGGAGCGCGTAATTGTGGT 61.098 57.895 8.43 0.00 0.00 4.16
2007 2329 3.069289 CTGCGGATATAGCAAATGAGCA 58.931 45.455 6.77 0.00 44.67 4.26
2013 2335 5.179929 CGGATATAGCAAATGAGCAACATGA 59.820 40.000 0.00 0.00 39.39 3.07
2063 2385 5.411781 CCTCTACTCGTTGCTAACAGATTT 58.588 41.667 0.00 0.00 0.00 2.17
2114 2437 2.967887 AGCCTGCCTGAAATTTGAGTTT 59.032 40.909 3.91 0.00 0.00 2.66
2352 2677 5.724328 TCTGTCTCATGTGAAATACCTGTC 58.276 41.667 0.00 0.00 0.00 3.51
2471 2796 0.728542 TCAGCTTATGTGTGCATGCG 59.271 50.000 14.09 0.00 36.58 4.73
2617 2942 9.630098 CTTCTGTGCAAACATTGAAATATTACT 57.370 29.630 0.00 0.00 0.00 2.24
2618 2943 8.969121 TCTGTGCAAACATTGAAATATTACTG 57.031 30.769 0.00 0.00 0.00 2.74
3003 3328 4.497291 ACCGGTCATAGCTAATTTTCCA 57.503 40.909 0.00 0.00 0.00 3.53
3044 3369 2.167900 GTCTGGGCGTGTATCCTAAACT 59.832 50.000 0.00 0.00 0.00 2.66
3590 3916 2.708216 TCTCCTGTTGCAACTGTTGA 57.292 45.000 28.61 22.29 0.00 3.18
3631 3957 2.441001 CCTATGCACTTCCCCTTCTCAT 59.559 50.000 0.00 0.00 0.00 2.90
3762 4088 4.020128 GGTCTTCTCTATTCACCCACAACT 60.020 45.833 0.00 0.00 0.00 3.16
3880 4206 7.923888 AGCAATATGTGTTGTTGTGATAGATC 58.076 34.615 0.00 0.00 0.00 2.75
3881 4207 7.772292 AGCAATATGTGTTGTTGTGATAGATCT 59.228 33.333 0.00 0.00 0.00 2.75
3937 4263 1.140589 CAGCGGCAACACAACCAAA 59.859 52.632 1.45 0.00 0.00 3.28
4053 4379 4.505808 TGGACACGTTCAGTTCAGTAAAA 58.494 39.130 0.00 0.00 0.00 1.52
4054 4380 4.936411 TGGACACGTTCAGTTCAGTAAAAA 59.064 37.500 0.00 0.00 0.00 1.94
4055 4381 5.587043 TGGACACGTTCAGTTCAGTAAAAAT 59.413 36.000 0.00 0.00 0.00 1.82
4056 4382 5.907391 GGACACGTTCAGTTCAGTAAAAATG 59.093 40.000 0.00 0.00 0.00 2.32
4057 4383 5.816919 ACACGTTCAGTTCAGTAAAAATGG 58.183 37.500 0.00 0.00 0.00 3.16
4058 4384 5.212194 CACGTTCAGTTCAGTAAAAATGGG 58.788 41.667 0.00 0.00 0.00 4.00
4059 4385 4.277423 ACGTTCAGTTCAGTAAAAATGGGG 59.723 41.667 0.00 0.00 0.00 4.96
4060 4386 4.556233 GTTCAGTTCAGTAAAAATGGGGC 58.444 43.478 0.00 0.00 0.00 5.80
4061 4387 3.838565 TCAGTTCAGTAAAAATGGGGCA 58.161 40.909 0.00 0.00 0.00 5.36
4062 4388 3.826157 TCAGTTCAGTAAAAATGGGGCAG 59.174 43.478 0.00 0.00 0.00 4.85
4063 4389 3.573967 CAGTTCAGTAAAAATGGGGCAGT 59.426 43.478 0.00 0.00 0.00 4.40
4064 4390 4.039124 CAGTTCAGTAAAAATGGGGCAGTT 59.961 41.667 0.00 0.00 0.00 3.16
4065 4391 5.242838 CAGTTCAGTAAAAATGGGGCAGTTA 59.757 40.000 0.00 0.00 0.00 2.24
4066 4392 6.016555 AGTTCAGTAAAAATGGGGCAGTTAT 58.983 36.000 0.00 0.00 0.00 1.89
4067 4393 6.496911 AGTTCAGTAAAAATGGGGCAGTTATT 59.503 34.615 0.00 0.00 0.00 1.40
4380 4721 6.442513 AAACCAAAGAAACAAGACAGAGAG 57.557 37.500 0.00 0.00 0.00 3.20
4519 4860 1.480954 ACACGGAGGACCATGTACATC 59.519 52.381 5.07 0.00 40.96 3.06
4906 5247 4.990526 AGATGATTGGACCTGTTGACTTT 58.009 39.130 0.00 0.00 0.00 2.66
5011 5352 1.613317 CCCTACTCCGGCACATCACA 61.613 60.000 0.00 0.00 0.00 3.58
5216 5557 2.787994 CAAGCATTGTGGAGGACTTCT 58.212 47.619 0.00 0.00 42.34 2.85
5394 5735 9.450807 AGAAATTGAGAAAAGTGATAACAAACG 57.549 29.630 0.00 0.00 0.00 3.60
5435 5782 0.975887 TGATGCACAGACAGCTACCA 59.024 50.000 0.00 0.00 0.00 3.25
5502 5849 5.190528 TGGAGGAGAGCAGTTGATTTATCTT 59.809 40.000 0.00 0.00 0.00 2.40
5645 6003 3.118371 CCTTATTTCGCCTCCACTTAGGT 60.118 47.826 0.00 0.00 39.02 3.08
5646 6004 4.514401 CTTATTTCGCCTCCACTTAGGTT 58.486 43.478 0.00 0.00 39.02 3.50
5647 6005 5.395990 CCTTATTTCGCCTCCACTTAGGTTA 60.396 44.000 0.00 0.00 39.02 2.85
5890 6249 2.660189 TTTAGCCGTAAGAAGGGACG 57.340 50.000 0.00 0.00 43.02 4.79
5907 6266 5.630121 AGGGACGGATTTATGCATCAATAA 58.370 37.500 0.19 0.00 0.00 1.40
5946 6305 6.605194 ACAGCTCTGTGATAGTTTCATCTCTA 59.395 38.462 1.15 0.00 43.11 2.43
5953 6312 6.162777 GTGATAGTTTCATCTCTATGCCTCC 58.837 44.000 0.00 0.00 36.54 4.30
6101 6460 3.804325 AGATGAGATTTTCATACACGGCG 59.196 43.478 4.80 4.80 46.51 6.46
6224 6583 2.471818 GCACATGCAACACACATTTCA 58.528 42.857 0.00 0.00 41.59 2.69
6420 7101 5.357257 TCGCAACTATCCTCTATGAAAACC 58.643 41.667 0.00 0.00 0.00 3.27
6466 7149 9.196552 GTTTTCATGAGGTAGAATTCAAAAAGG 57.803 33.333 8.44 0.00 0.00 3.11
6476 7159 9.736023 GGTAGAATTCAAAAAGGTAGCAATATG 57.264 33.333 8.44 0.00 0.00 1.78
6485 7168 9.438291 CAAAAAGGTAGCAATATGAAATACTCG 57.562 33.333 0.00 0.00 0.00 4.18
6488 7171 4.994852 GGTAGCAATATGAAATACTCGCCA 59.005 41.667 0.00 0.00 0.00 5.69
6626 7309 8.945057 CATAAAACCAAAATCCAAATAACCAGG 58.055 33.333 0.00 0.00 0.00 4.45
6633 7316 3.713826 TCCAAATAACCAGGGAGACAC 57.286 47.619 0.00 0.00 0.00 3.67
6746 7429 7.637132 GTGACAATTGTTCTTTGCAAAATCAAG 59.363 33.333 13.36 0.62 0.00 3.02
6809 7492 3.738282 CGCTCAAACAGATGTATCTAGCC 59.262 47.826 7.60 0.00 34.85 3.93
6810 7493 3.738282 GCTCAAACAGATGTATCTAGCCG 59.262 47.826 0.00 0.00 34.85 5.52
6811 7494 4.737946 GCTCAAACAGATGTATCTAGCCGT 60.738 45.833 0.00 0.00 34.85 5.68
6812 7495 5.339008 TCAAACAGATGTATCTAGCCGTT 57.661 39.130 0.00 0.00 34.85 4.44
6813 7496 5.348986 TCAAACAGATGTATCTAGCCGTTC 58.651 41.667 0.00 0.00 34.85 3.95
6814 7497 3.627732 ACAGATGTATCTAGCCGTTCG 57.372 47.619 0.00 0.00 34.85 3.95
6815 7498 3.211865 ACAGATGTATCTAGCCGTTCGA 58.788 45.455 0.00 0.00 34.85 3.71
6816 7499 3.251245 ACAGATGTATCTAGCCGTTCGAG 59.749 47.826 0.00 0.00 34.85 4.04
6817 7500 2.226912 AGATGTATCTAGCCGTTCGAGC 59.773 50.000 0.00 0.00 34.85 5.03
6818 7501 1.385528 TGTATCTAGCCGTTCGAGCA 58.614 50.000 0.00 0.00 0.00 4.26
6819 7502 1.954382 TGTATCTAGCCGTTCGAGCAT 59.046 47.619 0.00 0.00 0.00 3.79
6820 7503 2.361119 TGTATCTAGCCGTTCGAGCATT 59.639 45.455 0.00 0.00 0.00 3.56
6821 7504 3.566742 TGTATCTAGCCGTTCGAGCATTA 59.433 43.478 0.00 0.00 0.00 1.90
6822 7505 3.944055 ATCTAGCCGTTCGAGCATTAT 57.056 42.857 0.00 0.00 0.00 1.28
6823 7506 3.284323 TCTAGCCGTTCGAGCATTATC 57.716 47.619 0.00 0.00 0.00 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 9.814899 TTGTTTCATGTTGTTAGATTGTCAATT 57.185 25.926 0.00 0.00 0.00 2.32
60 62 4.037565 TCGCTGATACGTCTCCAACATATT 59.962 41.667 0.00 0.00 0.00 1.28
64 66 1.135489 GTCGCTGATACGTCTCCAACA 60.135 52.381 0.00 0.00 0.00 3.33
89 91 8.145767 TCTACTCTCTAATCTCTAGTTTCTCGG 58.854 40.741 0.00 0.00 0.00 4.63
123 125 4.532834 TCTATACTTGTCCCAATTTGCCC 58.467 43.478 0.00 0.00 0.00 5.36
125 127 7.283127 TCTGATTCTATACTTGTCCCAATTTGC 59.717 37.037 0.00 0.00 0.00 3.68
131 133 6.070995 ACGTTTCTGATTCTATACTTGTCCCA 60.071 38.462 0.00 0.00 0.00 4.37
188 190 3.442273 CGGGTAGGTATGTTTGCATGTTT 59.558 43.478 0.00 0.00 36.58 2.83
217 219 2.083774 GCATCCTCAATTCGACACCAA 58.916 47.619 0.00 0.00 0.00 3.67
224 226 2.546494 GGGCCGCATCCTCAATTCG 61.546 63.158 0.00 0.00 0.00 3.34
259 265 3.654020 GGCATCGCCGCATCTTCC 61.654 66.667 0.00 0.00 39.62 3.46
318 324 3.674528 ACAGAGAGATGTTGGAGTGTG 57.325 47.619 0.00 0.00 0.00 3.82
351 357 1.612442 TAGAACGAGGCCCAGGCTT 60.612 57.895 8.89 0.00 38.98 4.35
388 400 9.770097 CTACTCTTCATTCTAATTCTAATGGCA 57.230 33.333 10.97 0.00 34.52 4.92
429 441 2.795291 AGTGGCCCATCCTAGATACA 57.205 50.000 0.00 0.00 35.26 2.29
436 448 2.618045 CGAAAACTAAGTGGCCCATCCT 60.618 50.000 0.00 0.00 35.26 3.24
500 512 7.277098 GTCGTAATGAATGTGGTAGCTTTTAGA 59.723 37.037 0.00 0.00 0.00 2.10
503 515 5.703592 TGTCGTAATGAATGTGGTAGCTTTT 59.296 36.000 0.00 0.00 0.00 2.27
607 667 7.048629 TGTGTCTTTTCCTTTCATTGCAATA 57.951 32.000 12.53 0.00 0.00 1.90
621 681 5.332506 CGTTGCCATGATTTTGTGTCTTTTC 60.333 40.000 0.00 0.00 0.00 2.29
843 905 2.029838 AGGCCGAAAGATCATCACAC 57.970 50.000 0.00 0.00 0.00 3.82
906 968 2.423538 GCGGGAAAGAACACAATAGCAT 59.576 45.455 0.00 0.00 0.00 3.79
907 969 1.810151 GCGGGAAAGAACACAATAGCA 59.190 47.619 0.00 0.00 0.00 3.49
911 973 1.862602 GCGGCGGGAAAGAACACAAT 61.863 55.000 9.78 0.00 0.00 2.71
918 980 3.621805 TCACTGCGGCGGGAAAGA 61.622 61.111 14.26 2.77 0.00 2.52
922 984 3.755628 GTAGTCACTGCGGCGGGA 61.756 66.667 14.26 3.11 0.00 5.14
931 993 2.928801 TGTGGTTGCATGTAGTCACT 57.071 45.000 15.41 0.00 0.00 3.41
952 1014 1.913419 GTGATGAGGGGTAGGGTTTCA 59.087 52.381 0.00 0.00 0.00 2.69
974 1036 1.724582 GGGTGATGCCGGCACATAAC 61.725 60.000 35.50 25.38 37.99 1.89
976 1038 2.191908 GGGTGATGCCGGCACATA 59.808 61.111 35.50 18.62 37.99 2.29
1018 1080 1.891919 GGACGTCACTTTGGCAGCA 60.892 57.895 18.91 0.00 0.00 4.41
1019 1081 2.946762 GGACGTCACTTTGGCAGC 59.053 61.111 18.91 0.00 0.00 5.25
1034 1096 4.464597 CCCCCAATAAAGAAAAATGTCGGA 59.535 41.667 0.00 0.00 0.00 4.55
1068 1130 7.884816 TGTACCAAACGAAAAATGTGAAAAA 57.115 28.000 0.00 0.00 0.00 1.94
1156 1218 3.119101 CGGTAGCACCAGATTACTGTTCT 60.119 47.826 6.21 0.00 42.05 3.01
1157 1219 3.119245 TCGGTAGCACCAGATTACTGTTC 60.119 47.826 6.21 0.00 42.05 3.18
1158 1220 2.829720 TCGGTAGCACCAGATTACTGTT 59.170 45.455 6.21 0.00 42.05 3.16
1159 1221 2.427453 CTCGGTAGCACCAGATTACTGT 59.573 50.000 6.21 0.00 42.05 3.55
1160 1222 2.688446 TCTCGGTAGCACCAGATTACTG 59.312 50.000 6.21 0.00 38.47 2.74
1161 1223 2.688958 GTCTCGGTAGCACCAGATTACT 59.311 50.000 6.21 0.00 38.47 2.24
1162 1224 2.688958 AGTCTCGGTAGCACCAGATTAC 59.311 50.000 6.21 5.86 38.47 1.89
1163 1225 3.014304 AGTCTCGGTAGCACCAGATTA 57.986 47.619 6.21 0.00 38.47 1.75
1164 1226 1.853963 AGTCTCGGTAGCACCAGATT 58.146 50.000 6.21 3.07 38.47 2.40
1165 1227 1.853963 AAGTCTCGGTAGCACCAGAT 58.146 50.000 6.21 0.00 38.47 2.90
1166 1228 2.502142 TAAGTCTCGGTAGCACCAGA 57.498 50.000 6.21 5.28 38.47 3.86
1167 1229 3.587797 TTTAAGTCTCGGTAGCACCAG 57.412 47.619 6.21 3.46 38.47 4.00
1168 1230 3.857052 CATTTAAGTCTCGGTAGCACCA 58.143 45.455 6.21 0.00 38.47 4.17
1169 1231 2.608090 GCATTTAAGTCTCGGTAGCACC 59.392 50.000 0.00 0.00 34.05 5.01
1170 1232 3.522553 AGCATTTAAGTCTCGGTAGCAC 58.477 45.455 0.00 0.00 0.00 4.40
1171 1233 3.887621 AGCATTTAAGTCTCGGTAGCA 57.112 42.857 0.00 0.00 0.00 3.49
1172 1234 4.049869 GGTAGCATTTAAGTCTCGGTAGC 58.950 47.826 0.00 0.00 0.00 3.58
1173 1235 4.201990 ACGGTAGCATTTAAGTCTCGGTAG 60.202 45.833 0.00 0.00 0.00 3.18
1174 1236 3.696051 ACGGTAGCATTTAAGTCTCGGTA 59.304 43.478 0.00 0.00 0.00 4.02
1175 1237 2.494870 ACGGTAGCATTTAAGTCTCGGT 59.505 45.455 0.00 0.00 0.00 4.69
1176 1238 2.858344 CACGGTAGCATTTAAGTCTCGG 59.142 50.000 0.00 0.00 0.00 4.63
1177 1239 3.766151 TCACGGTAGCATTTAAGTCTCG 58.234 45.455 0.00 0.00 0.00 4.04
1178 1240 6.270815 TGTATCACGGTAGCATTTAAGTCTC 58.729 40.000 0.00 0.00 0.00 3.36
1179 1241 6.216801 TGTATCACGGTAGCATTTAAGTCT 57.783 37.500 0.00 0.00 0.00 3.24
1180 1242 6.509677 GCTTGTATCACGGTAGCATTTAAGTC 60.510 42.308 0.00 0.00 0.00 3.01
1181 1243 5.293569 GCTTGTATCACGGTAGCATTTAAGT 59.706 40.000 0.00 0.00 0.00 2.24
1182 1244 5.293324 TGCTTGTATCACGGTAGCATTTAAG 59.707 40.000 0.00 0.00 36.96 1.85
1183 1245 5.179533 TGCTTGTATCACGGTAGCATTTAA 58.820 37.500 0.00 0.00 36.96 1.52
1184 1246 4.760878 TGCTTGTATCACGGTAGCATTTA 58.239 39.130 0.00 0.00 36.96 1.40
1185 1247 3.605634 TGCTTGTATCACGGTAGCATTT 58.394 40.909 0.00 0.00 36.96 2.32
1186 1248 3.260475 TGCTTGTATCACGGTAGCATT 57.740 42.857 0.00 0.00 36.96 3.56
1187 1249 2.979814 TGCTTGTATCACGGTAGCAT 57.020 45.000 0.00 0.00 36.96 3.79
1188 1250 2.430694 AGATGCTTGTATCACGGTAGCA 59.569 45.455 3.74 3.74 44.91 3.49
1189 1251 2.797156 CAGATGCTTGTATCACGGTAGC 59.203 50.000 1.91 0.00 0.00 3.58
1190 1252 3.384668 CCAGATGCTTGTATCACGGTAG 58.615 50.000 1.91 0.00 0.00 3.18
1191 1253 2.102420 CCCAGATGCTTGTATCACGGTA 59.898 50.000 1.91 0.00 0.00 4.02
1192 1254 1.134401 CCCAGATGCTTGTATCACGGT 60.134 52.381 1.91 0.00 0.00 4.83
1193 1255 1.134401 ACCCAGATGCTTGTATCACGG 60.134 52.381 1.91 2.95 0.00 4.94
1194 1256 2.205074 GACCCAGATGCTTGTATCACG 58.795 52.381 1.91 0.00 0.00 4.35
1195 1257 2.205074 CGACCCAGATGCTTGTATCAC 58.795 52.381 1.91 0.00 0.00 3.06
1196 1258 1.831106 ACGACCCAGATGCTTGTATCA 59.169 47.619 0.00 0.00 0.00 2.15
1197 1259 2.474816 GACGACCCAGATGCTTGTATC 58.525 52.381 0.00 0.00 0.00 2.24
1198 1260 1.202417 CGACGACCCAGATGCTTGTAT 60.202 52.381 0.00 0.00 0.00 2.29
1199 1261 0.172578 CGACGACCCAGATGCTTGTA 59.827 55.000 0.00 0.00 0.00 2.41
1200 1262 1.079819 CGACGACCCAGATGCTTGT 60.080 57.895 0.00 0.00 0.00 3.16
1201 1263 1.811266 CCGACGACCCAGATGCTTG 60.811 63.158 0.00 0.00 0.00 4.01
1202 1264 1.330655 ATCCGACGACCCAGATGCTT 61.331 55.000 0.00 0.00 0.00 3.91
1203 1265 1.330655 AATCCGACGACCCAGATGCT 61.331 55.000 0.00 0.00 0.00 3.79
1204 1266 0.876342 GAATCCGACGACCCAGATGC 60.876 60.000 0.00 0.00 0.00 3.91
1205 1267 0.747255 AGAATCCGACGACCCAGATG 59.253 55.000 0.00 0.00 0.00 2.90
1206 1268 1.486211 AAGAATCCGACGACCCAGAT 58.514 50.000 0.00 0.00 0.00 2.90
1207 1269 2.022195 CTAAGAATCCGACGACCCAGA 58.978 52.381 0.00 0.00 0.00 3.86
1208 1270 2.022195 TCTAAGAATCCGACGACCCAG 58.978 52.381 0.00 0.00 0.00 4.45
1209 1271 2.133281 TCTAAGAATCCGACGACCCA 57.867 50.000 0.00 0.00 0.00 4.51
1210 1272 2.350580 CGATCTAAGAATCCGACGACCC 60.351 54.545 0.00 0.00 0.00 4.46
1211 1273 2.350580 CCGATCTAAGAATCCGACGACC 60.351 54.545 0.00 0.00 0.00 4.79
1212 1274 2.547211 TCCGATCTAAGAATCCGACGAC 59.453 50.000 0.00 0.00 0.00 4.34
1213 1275 2.842457 TCCGATCTAAGAATCCGACGA 58.158 47.619 0.00 0.00 0.00 4.20
1214 1276 3.188667 TCATCCGATCTAAGAATCCGACG 59.811 47.826 0.00 0.00 0.00 5.12
1215 1277 4.023107 TGTCATCCGATCTAAGAATCCGAC 60.023 45.833 0.00 0.00 0.00 4.79
1216 1278 4.142038 TGTCATCCGATCTAAGAATCCGA 58.858 43.478 0.00 0.00 0.00 4.55
1217 1279 4.505313 TGTCATCCGATCTAAGAATCCG 57.495 45.455 0.00 0.00 0.00 4.18
1218 1280 6.931281 TCAAATGTCATCCGATCTAAGAATCC 59.069 38.462 0.00 0.00 0.00 3.01
1219 1281 7.953158 TCAAATGTCATCCGATCTAAGAATC 57.047 36.000 0.00 0.00 0.00 2.52
1224 1286 9.559732 ACAATTATCAAATGTCATCCGATCTAA 57.440 29.630 1.26 0.00 0.00 2.10
1225 1287 9.559732 AACAATTATCAAATGTCATCCGATCTA 57.440 29.630 1.26 0.00 0.00 1.98
1226 1288 8.347771 CAACAATTATCAAATGTCATCCGATCT 58.652 33.333 1.26 0.00 0.00 2.75
1227 1289 7.592533 CCAACAATTATCAAATGTCATCCGATC 59.407 37.037 1.26 0.00 0.00 3.69
1228 1290 7.285172 TCCAACAATTATCAAATGTCATCCGAT 59.715 33.333 0.00 3.26 0.00 4.18
1229 1291 6.601217 TCCAACAATTATCAAATGTCATCCGA 59.399 34.615 0.00 0.00 0.00 4.55
1230 1292 6.692681 GTCCAACAATTATCAAATGTCATCCG 59.307 38.462 0.00 0.00 0.00 4.18
1231 1293 6.980397 GGTCCAACAATTATCAAATGTCATCC 59.020 38.462 0.00 0.00 0.00 3.51
1232 1294 6.980397 GGGTCCAACAATTATCAAATGTCATC 59.020 38.462 0.00 0.00 0.00 2.92
1233 1295 6.405731 CGGGTCCAACAATTATCAAATGTCAT 60.406 38.462 0.00 0.00 0.00 3.06
1234 1296 5.105957 CGGGTCCAACAATTATCAAATGTCA 60.106 40.000 0.00 0.00 0.00 3.58
1235 1297 5.339990 CGGGTCCAACAATTATCAAATGTC 58.660 41.667 0.00 0.00 0.00 3.06
1236 1298 4.381505 GCGGGTCCAACAATTATCAAATGT 60.382 41.667 0.00 0.00 0.00 2.71
1237 1299 4.111916 GCGGGTCCAACAATTATCAAATG 58.888 43.478 0.00 0.00 0.00 2.32
1238 1300 4.023291 AGCGGGTCCAACAATTATCAAAT 58.977 39.130 0.00 0.00 0.00 2.32
1239 1301 3.192422 CAGCGGGTCCAACAATTATCAAA 59.808 43.478 0.00 0.00 0.00 2.69
1240 1302 2.752354 CAGCGGGTCCAACAATTATCAA 59.248 45.455 0.00 0.00 0.00 2.57
1241 1303 2.364632 CAGCGGGTCCAACAATTATCA 58.635 47.619 0.00 0.00 0.00 2.15
1242 1304 1.676006 CCAGCGGGTCCAACAATTATC 59.324 52.381 0.00 0.00 0.00 1.75
1243 1305 1.283613 TCCAGCGGGTCCAACAATTAT 59.716 47.619 1.81 0.00 34.93 1.28
1244 1306 0.693622 TCCAGCGGGTCCAACAATTA 59.306 50.000 1.81 0.00 34.93 1.40
1245 1307 0.893727 GTCCAGCGGGTCCAACAATT 60.894 55.000 1.81 0.00 34.93 2.32
1246 1308 1.303317 GTCCAGCGGGTCCAACAAT 60.303 57.895 1.81 0.00 34.93 2.71
1247 1309 2.112297 GTCCAGCGGGTCCAACAA 59.888 61.111 1.81 0.00 34.93 2.83
1248 1310 3.948719 GGTCCAGCGGGTCCAACA 61.949 66.667 13.88 0.00 41.51 3.33
1249 1311 2.288025 TAGGTCCAGCGGGTCCAAC 61.288 63.158 20.04 3.02 44.00 3.77
1250 1312 2.120940 TAGGTCCAGCGGGTCCAA 59.879 61.111 20.04 0.00 44.00 3.53
1251 1313 2.682494 GTAGGTCCAGCGGGTCCA 60.682 66.667 20.04 4.84 44.00 4.02
1252 1314 3.834799 CGTAGGTCCAGCGGGTCC 61.835 72.222 11.05 11.05 42.13 4.46
1253 1315 4.509737 GCGTAGGTCCAGCGGGTC 62.510 72.222 1.81 0.00 34.93 4.46
1258 1320 1.644786 AAATTGCGCGTAGGTCCAGC 61.645 55.000 8.43 0.00 0.00 4.85
1259 1321 0.802494 AAAATTGCGCGTAGGTCCAG 59.198 50.000 8.43 0.00 0.00 3.86
1260 1322 1.068885 CAAAAATTGCGCGTAGGTCCA 60.069 47.619 8.43 0.00 0.00 4.02
1261 1323 1.613270 CAAAAATTGCGCGTAGGTCC 58.387 50.000 8.43 0.00 0.00 4.46
1262 1324 1.198178 TCCAAAAATTGCGCGTAGGTC 59.802 47.619 8.43 0.00 0.00 3.85
1263 1325 1.068816 GTCCAAAAATTGCGCGTAGGT 60.069 47.619 8.43 0.00 0.00 3.08
1264 1326 1.199097 AGTCCAAAAATTGCGCGTAGG 59.801 47.619 8.43 0.00 0.00 3.18
1265 1327 2.159627 AGAGTCCAAAAATTGCGCGTAG 59.840 45.455 8.43 0.00 0.00 3.51
1266 1328 2.147958 AGAGTCCAAAAATTGCGCGTA 58.852 42.857 8.43 0.00 0.00 4.42
1267 1329 0.951558 AGAGTCCAAAAATTGCGCGT 59.048 45.000 8.43 0.00 0.00 6.01
1268 1330 2.050477 AAGAGTCCAAAAATTGCGCG 57.950 45.000 0.00 0.00 0.00 6.86
1269 1331 2.476241 CCAAAGAGTCCAAAAATTGCGC 59.524 45.455 0.00 0.00 0.00 6.09
1270 1332 3.976169 TCCAAAGAGTCCAAAAATTGCG 58.024 40.909 0.00 0.00 0.00 4.85
1271 1333 5.600696 TCTTCCAAAGAGTCCAAAAATTGC 58.399 37.500 0.00 0.00 32.71 3.56
1272 1334 8.667076 AAATCTTCCAAAGAGTCCAAAAATTG 57.333 30.769 0.00 0.00 41.61 2.32
1273 1335 9.685276 AAAAATCTTCCAAAGAGTCCAAAAATT 57.315 25.926 0.00 0.00 41.61 1.82
1298 1360 8.366401 TCAATGACTCTGCAATATTTCCAAAAA 58.634 29.630 0.00 0.00 0.00 1.94
1299 1361 7.894708 TCAATGACTCTGCAATATTTCCAAAA 58.105 30.769 0.00 0.00 0.00 2.44
1300 1362 7.394077 TCTCAATGACTCTGCAATATTTCCAAA 59.606 33.333 0.00 0.00 0.00 3.28
1301 1363 6.885918 TCTCAATGACTCTGCAATATTTCCAA 59.114 34.615 0.00 0.00 0.00 3.53
1302 1364 6.417258 TCTCAATGACTCTGCAATATTTCCA 58.583 36.000 0.00 0.00 0.00 3.53
1303 1365 6.932356 TCTCAATGACTCTGCAATATTTCC 57.068 37.500 0.00 0.00 0.00 3.13
1304 1366 7.192232 GGTTCTCAATGACTCTGCAATATTTC 58.808 38.462 0.00 0.00 0.00 2.17
1305 1367 6.183360 CGGTTCTCAATGACTCTGCAATATTT 60.183 38.462 0.00 0.00 0.00 1.40
1306 1368 5.295292 CGGTTCTCAATGACTCTGCAATATT 59.705 40.000 0.00 0.00 0.00 1.28
1307 1369 4.813161 CGGTTCTCAATGACTCTGCAATAT 59.187 41.667 0.00 0.00 0.00 1.28
1308 1370 4.183865 CGGTTCTCAATGACTCTGCAATA 58.816 43.478 0.00 0.00 0.00 1.90
1309 1371 3.005554 CGGTTCTCAATGACTCTGCAAT 58.994 45.455 0.00 0.00 0.00 3.56
1310 1372 2.224281 ACGGTTCTCAATGACTCTGCAA 60.224 45.455 0.00 0.00 0.00 4.08
1311 1373 1.344438 ACGGTTCTCAATGACTCTGCA 59.656 47.619 0.00 0.00 0.00 4.41
1312 1374 1.996191 GACGGTTCTCAATGACTCTGC 59.004 52.381 0.00 0.00 0.00 4.26
1313 1375 2.611518 GGACGGTTCTCAATGACTCTG 58.388 52.381 0.00 0.00 0.00 3.35
1314 1376 1.202582 CGGACGGTTCTCAATGACTCT 59.797 52.381 0.00 0.00 0.00 3.24
1315 1377 1.201647 TCGGACGGTTCTCAATGACTC 59.798 52.381 0.00 0.00 0.00 3.36
1316 1378 1.254026 TCGGACGGTTCTCAATGACT 58.746 50.000 0.00 0.00 0.00 3.41
1317 1379 2.159226 AGATCGGACGGTTCTCAATGAC 60.159 50.000 0.00 0.00 0.00 3.06
1318 1380 2.100197 AGATCGGACGGTTCTCAATGA 58.900 47.619 0.00 0.00 0.00 2.57
1319 1381 2.159240 TCAGATCGGACGGTTCTCAATG 60.159 50.000 0.00 0.00 0.00 2.82
1320 1382 2.100197 TCAGATCGGACGGTTCTCAAT 58.900 47.619 0.00 0.00 0.00 2.57
1321 1383 1.541379 TCAGATCGGACGGTTCTCAA 58.459 50.000 0.00 0.00 0.00 3.02
1322 1384 1.541379 TTCAGATCGGACGGTTCTCA 58.459 50.000 0.00 0.00 0.00 3.27
1323 1385 2.649331 TTTCAGATCGGACGGTTCTC 57.351 50.000 0.00 0.00 0.00 2.87
1324 1386 3.522553 GATTTTCAGATCGGACGGTTCT 58.477 45.455 0.00 0.00 0.00 3.01
1325 1387 2.608090 GGATTTTCAGATCGGACGGTTC 59.392 50.000 0.00 0.00 0.00 3.62
1326 1388 2.629051 GGATTTTCAGATCGGACGGTT 58.371 47.619 0.00 0.00 0.00 4.44
1327 1389 1.470979 CGGATTTTCAGATCGGACGGT 60.471 52.381 0.00 0.00 0.00 4.83
1328 1390 1.202371 TCGGATTTTCAGATCGGACGG 60.202 52.381 0.00 0.00 32.51 4.79
1329 1391 1.852895 GTCGGATTTTCAGATCGGACG 59.147 52.381 0.00 0.00 42.53 4.79
1330 1392 1.852895 CGTCGGATTTTCAGATCGGAC 59.147 52.381 12.69 12.69 45.45 4.79
1331 1393 1.202371 CCGTCGGATTTTCAGATCGGA 60.202 52.381 4.91 0.00 37.40 4.55
1332 1394 1.209128 CCGTCGGATTTTCAGATCGG 58.791 55.000 4.91 0.00 32.85 4.18
1333 1395 1.852895 GACCGTCGGATTTTCAGATCG 59.147 52.381 20.51 0.00 0.00 3.69
1334 1396 2.202566 GGACCGTCGGATTTTCAGATC 58.797 52.381 20.51 0.79 0.00 2.75
1335 1397 1.553248 TGGACCGTCGGATTTTCAGAT 59.447 47.619 20.51 0.00 0.00 2.90
1336 1398 0.970640 TGGACCGTCGGATTTTCAGA 59.029 50.000 20.51 0.00 0.00 3.27
1337 1399 1.067142 TCTGGACCGTCGGATTTTCAG 60.067 52.381 20.51 10.36 0.00 3.02
1338 1400 0.970640 TCTGGACCGTCGGATTTTCA 59.029 50.000 20.51 0.00 0.00 2.69
1339 1401 2.000447 CTTCTGGACCGTCGGATTTTC 59.000 52.381 20.51 4.48 0.00 2.29
1340 1402 1.346722 ACTTCTGGACCGTCGGATTTT 59.653 47.619 20.51 0.00 0.00 1.82
1341 1403 0.974383 ACTTCTGGACCGTCGGATTT 59.026 50.000 20.51 0.00 0.00 2.17
1342 1404 0.974383 AACTTCTGGACCGTCGGATT 59.026 50.000 20.51 0.00 0.00 3.01
1343 1405 0.531200 GAACTTCTGGACCGTCGGAT 59.469 55.000 20.51 1.57 0.00 4.18
1344 1406 0.824595 TGAACTTCTGGACCGTCGGA 60.825 55.000 20.51 0.00 0.00 4.55
1345 1407 0.246635 ATGAACTTCTGGACCGTCGG 59.753 55.000 10.48 10.48 0.00 4.79
1346 1408 2.933495 TATGAACTTCTGGACCGTCG 57.067 50.000 0.00 0.00 0.00 5.12
1347 1409 4.113354 GTGATATGAACTTCTGGACCGTC 58.887 47.826 0.00 0.00 0.00 4.79
1348 1410 3.428999 CGTGATATGAACTTCTGGACCGT 60.429 47.826 0.00 0.00 0.00 4.83
1349 1411 3.116300 CGTGATATGAACTTCTGGACCG 58.884 50.000 0.00 0.00 0.00 4.79
1350 1412 3.118738 ACCGTGATATGAACTTCTGGACC 60.119 47.826 0.00 0.00 0.00 4.46
1351 1413 4.124851 ACCGTGATATGAACTTCTGGAC 57.875 45.455 0.00 0.00 0.00 4.02
1352 1414 4.202121 GCTACCGTGATATGAACTTCTGGA 60.202 45.833 0.00 0.00 0.00 3.86
1353 1415 4.051922 GCTACCGTGATATGAACTTCTGG 58.948 47.826 0.00 0.00 0.00 3.86
1354 1416 4.504461 GTGCTACCGTGATATGAACTTCTG 59.496 45.833 0.00 0.00 0.00 3.02
1355 1417 4.441634 GGTGCTACCGTGATATGAACTTCT 60.442 45.833 0.00 0.00 0.00 2.85
1356 1418 3.802685 GGTGCTACCGTGATATGAACTTC 59.197 47.826 0.00 0.00 0.00 3.01
1357 1419 3.451178 AGGTGCTACCGTGATATGAACTT 59.549 43.478 0.00 0.00 44.90 2.66
1358 1420 3.031736 AGGTGCTACCGTGATATGAACT 58.968 45.455 0.00 0.00 44.90 3.01
1359 1421 3.454371 AGGTGCTACCGTGATATGAAC 57.546 47.619 0.00 0.00 44.90 3.18
1360 1422 4.891168 TCTTAGGTGCTACCGTGATATGAA 59.109 41.667 0.00 0.00 44.90 2.57
1361 1423 4.466827 TCTTAGGTGCTACCGTGATATGA 58.533 43.478 0.00 0.00 44.90 2.15
1362 1424 4.848562 TCTTAGGTGCTACCGTGATATG 57.151 45.455 0.00 0.00 44.90 1.78
1363 1425 5.125739 GCTATCTTAGGTGCTACCGTGATAT 59.874 44.000 12.79 0.00 44.90 1.63
1364 1426 4.458295 GCTATCTTAGGTGCTACCGTGATA 59.542 45.833 0.00 0.00 44.90 2.15
1365 1427 3.256136 GCTATCTTAGGTGCTACCGTGAT 59.744 47.826 0.00 0.00 44.90 3.06
1366 1428 2.621998 GCTATCTTAGGTGCTACCGTGA 59.378 50.000 0.00 0.00 44.90 4.35
1367 1429 2.361119 TGCTATCTTAGGTGCTACCGTG 59.639 50.000 0.00 0.00 44.90 4.94
1368 1430 2.361438 GTGCTATCTTAGGTGCTACCGT 59.639 50.000 0.00 0.00 44.90 4.83
1369 1431 2.623889 AGTGCTATCTTAGGTGCTACCG 59.376 50.000 0.00 0.00 44.90 4.02
1370 1432 5.071370 TCTAGTGCTATCTTAGGTGCTACC 58.929 45.833 0.00 0.00 38.99 3.18
1371 1433 6.827586 ATCTAGTGCTATCTTAGGTGCTAC 57.172 41.667 0.00 0.00 0.00 3.58
1372 1434 9.535170 AAATATCTAGTGCTATCTTAGGTGCTA 57.465 33.333 0.00 0.00 0.00 3.49
1373 1435 8.429237 AAATATCTAGTGCTATCTTAGGTGCT 57.571 34.615 0.00 0.00 0.00 4.40
1374 1436 9.145865 GAAAATATCTAGTGCTATCTTAGGTGC 57.854 37.037 0.00 0.00 0.00 5.01
1375 1437 9.646427 GGAAAATATCTAGTGCTATCTTAGGTG 57.354 37.037 0.00 0.00 0.00 4.00
1376 1438 8.817876 GGGAAAATATCTAGTGCTATCTTAGGT 58.182 37.037 0.00 0.00 0.00 3.08
1377 1439 7.976734 CGGGAAAATATCTAGTGCTATCTTAGG 59.023 40.741 0.00 0.00 0.00 2.69
1378 1440 7.976734 CCGGGAAAATATCTAGTGCTATCTTAG 59.023 40.741 0.00 0.00 0.00 2.18
1379 1441 7.672660 TCCGGGAAAATATCTAGTGCTATCTTA 59.327 37.037 0.00 0.00 0.00 2.10
1380 1442 6.497259 TCCGGGAAAATATCTAGTGCTATCTT 59.503 38.462 0.00 0.00 0.00 2.40
1381 1443 6.017192 TCCGGGAAAATATCTAGTGCTATCT 58.983 40.000 0.00 0.00 0.00 1.98
1382 1444 6.100668 GTCCGGGAAAATATCTAGTGCTATC 58.899 44.000 0.00 0.00 0.00 2.08
1383 1445 5.542635 TGTCCGGGAAAATATCTAGTGCTAT 59.457 40.000 0.00 0.00 0.00 2.97
1384 1446 4.897076 TGTCCGGGAAAATATCTAGTGCTA 59.103 41.667 0.00 0.00 0.00 3.49
1385 1447 3.709653 TGTCCGGGAAAATATCTAGTGCT 59.290 43.478 0.00 0.00 0.00 4.40
1386 1448 4.058817 CTGTCCGGGAAAATATCTAGTGC 58.941 47.826 0.00 0.00 0.00 4.40
1387 1449 5.531122 TCTGTCCGGGAAAATATCTAGTG 57.469 43.478 0.00 0.00 0.00 2.74
1388 1450 5.424252 TGTTCTGTCCGGGAAAATATCTAGT 59.576 40.000 0.00 0.00 0.00 2.57
1389 1451 5.914033 TGTTCTGTCCGGGAAAATATCTAG 58.086 41.667 0.00 0.00 0.00 2.43
1390 1452 5.943349 TGTTCTGTCCGGGAAAATATCTA 57.057 39.130 0.00 0.00 0.00 1.98
1391 1453 4.837093 TGTTCTGTCCGGGAAAATATCT 57.163 40.909 0.00 0.00 0.00 1.98
1392 1454 4.201920 GCTTGTTCTGTCCGGGAAAATATC 60.202 45.833 0.00 0.00 0.00 1.63
1393 1455 3.694566 GCTTGTTCTGTCCGGGAAAATAT 59.305 43.478 0.00 0.00 0.00 1.28
1394 1456 3.078837 GCTTGTTCTGTCCGGGAAAATA 58.921 45.455 0.00 0.00 0.00 1.40
1395 1457 1.886542 GCTTGTTCTGTCCGGGAAAAT 59.113 47.619 0.00 0.00 0.00 1.82
1396 1458 1.314730 GCTTGTTCTGTCCGGGAAAA 58.685 50.000 0.00 0.00 0.00 2.29
1397 1459 0.536460 GGCTTGTTCTGTCCGGGAAA 60.536 55.000 0.00 0.00 0.00 3.13
1398 1460 1.072505 GGCTTGTTCTGTCCGGGAA 59.927 57.895 0.00 0.00 0.00 3.97
1399 1461 2.747686 GGCTTGTTCTGTCCGGGA 59.252 61.111 0.00 0.00 0.00 5.14
1400 1462 2.742372 CGGCTTGTTCTGTCCGGG 60.742 66.667 0.00 0.00 38.35 5.73
1402 1464 3.423154 GCCGGCTTGTTCTGTCCG 61.423 66.667 22.15 0.00 41.41 4.79
1609 1931 1.045350 CAGATTGGGCGAGGAGGAGA 61.045 60.000 0.00 0.00 0.00 3.71
1843 2165 4.751098 ACGTGCTAATTCTCGGTAAACAAA 59.249 37.500 0.00 0.00 0.00 2.83
1915 2237 2.223876 ACAGCAATTCAGCACAACCAAG 60.224 45.455 0.00 0.00 36.85 3.61
2007 2329 9.190317 TCGAGCTAATACATCCTATATCATGTT 57.810 33.333 0.00 0.00 34.92 2.71
2013 2335 8.346300 CGATTGTCGAGCTAATACATCCTATAT 58.654 37.037 0.00 0.00 43.74 0.86
2063 2385 4.980573 ACTTATGAGCCTTTACCACACAA 58.019 39.130 0.00 0.00 0.00 3.33
2114 2437 8.472007 AAACTAATTAATTCAGTGAACCACCA 57.528 30.769 7.96 0.00 34.49 4.17
2318 2643 6.233434 TCACATGAGACAGATTGCTTAAGTT 58.767 36.000 0.00 0.00 0.00 2.66
2319 2644 5.798132 TCACATGAGACAGATTGCTTAAGT 58.202 37.500 0.00 0.00 0.00 2.24
2471 2796 4.237724 GTGCAATCTACAAAAAGGAAGGC 58.762 43.478 0.00 0.00 0.00 4.35
2617 2942 6.880529 TCTGATGCAACAAAGATCAACTATCA 59.119 34.615 0.00 0.00 37.03 2.15
2618 2943 7.312657 TCTGATGCAACAAAGATCAACTATC 57.687 36.000 0.00 0.00 34.52 2.08
2897 3222 7.067008 CCTTAGTGTTCTGGGTATGTATTTTGG 59.933 40.741 0.00 0.00 0.00 3.28
3003 3328 2.107366 CTGGTGGTTTTGTTTCCAGGT 58.893 47.619 0.00 0.00 41.10 4.00
3044 3369 3.181528 GCGTTTTCAATCGTATTCGGACA 60.182 43.478 0.00 0.00 37.69 4.02
3473 3799 5.843673 TTACATCAGCAAAAACACTTGGA 57.156 34.783 0.00 0.00 0.00 3.53
3590 3916 1.512735 GGAATAGGACTGGCCCTCTT 58.487 55.000 0.00 0.00 37.74 2.85
3631 3957 1.754803 CGGTGGCTGATAGTAAGGACA 59.245 52.381 0.00 0.00 0.00 4.02
3729 4055 6.097554 GTGAATAGAGAAGACCATCAGGAAGA 59.902 42.308 0.00 0.00 38.69 2.87
3809 4135 5.659525 TGGAATAATACCGGAGACTGAAAGA 59.340 40.000 9.46 0.00 37.43 2.52
3880 4206 5.947228 TTAGTTTGAAATGGCTCTGACAG 57.053 39.130 0.00 0.00 0.00 3.51
3881 4207 6.265196 ACAATTAGTTTGAAATGGCTCTGACA 59.735 34.615 0.00 0.00 38.76 3.58
3937 4263 2.958355 CCAAATAATCCCGGAGCATTGT 59.042 45.455 0.73 0.00 0.00 2.71
4053 4379 4.078630 AGGTCCAATAATAACTGCCCCATT 60.079 41.667 0.00 0.00 0.00 3.16
4054 4380 3.467103 AGGTCCAATAATAACTGCCCCAT 59.533 43.478 0.00 0.00 0.00 4.00
4055 4381 2.856231 AGGTCCAATAATAACTGCCCCA 59.144 45.455 0.00 0.00 0.00 4.96
4056 4382 3.117663 TGAGGTCCAATAATAACTGCCCC 60.118 47.826 0.00 0.00 0.00 5.80
4057 4383 4.164843 TGAGGTCCAATAATAACTGCCC 57.835 45.455 0.00 0.00 0.00 5.36
4058 4384 5.193679 AGTTGAGGTCCAATAATAACTGCC 58.806 41.667 0.00 0.00 37.08 4.85
4059 4385 6.759497 AAGTTGAGGTCCAATAATAACTGC 57.241 37.500 0.00 0.00 37.08 4.40
4060 4386 7.176690 ACCAAAGTTGAGGTCCAATAATAACTG 59.823 37.037 0.00 0.00 37.08 3.16
4061 4387 7.238710 ACCAAAGTTGAGGTCCAATAATAACT 58.761 34.615 0.00 0.00 37.08 2.24
4062 4388 7.462571 ACCAAAGTTGAGGTCCAATAATAAC 57.537 36.000 0.00 0.00 37.08 1.89
4063 4389 9.762381 ATAACCAAAGTTGAGGTCCAATAATAA 57.238 29.630 1.09 0.00 37.07 1.40
4064 4390 9.762381 AATAACCAAAGTTGAGGTCCAATAATA 57.238 29.630 1.09 0.00 37.07 0.98
4065 4391 8.664669 AATAACCAAAGTTGAGGTCCAATAAT 57.335 30.769 1.09 0.00 37.07 1.28
4066 4392 8.364142 CAAATAACCAAAGTTGAGGTCCAATAA 58.636 33.333 1.09 0.00 37.07 1.40
4067 4393 7.507616 ACAAATAACCAAAGTTGAGGTCCAATA 59.492 33.333 1.09 0.00 37.07 1.90
4298 4639 0.940126 CAGCGCACCATTCTGGATAC 59.060 55.000 11.47 0.00 40.96 2.24
4519 4860 5.331902 CCAAACATTGTACTTAATGCTCCG 58.668 41.667 5.97 0.00 40.80 4.63
4906 5247 5.069318 TGCCAATAATCAACACTTCTGTCA 58.931 37.500 0.00 0.00 0.00 3.58
5011 5352 7.285401 ACAGGTTTGTTGTCATTATTCTCAAGT 59.715 33.333 0.00 0.00 32.28 3.16
5216 5557 3.628008 TCTCCCGTTGCTCATAGAAGTA 58.372 45.455 0.00 0.00 0.00 2.24
5411 5758 3.000684 AGCTGTCTGTGCATCATTCAT 57.999 42.857 0.00 0.00 0.00 2.57
5435 5782 1.541588 GTTGCTTTCTTCGGCCTTGAT 59.458 47.619 0.00 0.00 0.00 2.57
5502 5849 4.261801 GCTCCAAACTAGTAAATGGCAGA 58.738 43.478 14.45 1.52 32.87 4.26
5747 6106 5.221028 CCACTAAAACTGAACAGCATTCACA 60.221 40.000 1.46 0.00 0.00 3.58
5907 6266 6.098838 TCACAGAGCTGTAGATTATGGAATGT 59.901 38.462 2.36 0.00 42.83 2.71
5946 6305 6.100859 TGAGAATGAGAAAAGATAGGAGGCAT 59.899 38.462 0.00 0.00 0.00 4.40
5985 6344 6.017605 ACAGCTGAACAACAAGAGAATAACAG 60.018 38.462 23.35 0.00 0.00 3.16
6221 6580 9.891828 GTGAATATATGGTCGCAATTAATTGAA 57.108 29.630 28.33 14.37 40.14 2.69
6224 6583 8.317891 TCGTGAATATATGGTCGCAATTAATT 57.682 30.769 0.00 0.00 0.00 1.40
6311 6670 4.046462 CCTTGATGTTGCACAAGAACTTG 58.954 43.478 14.53 12.22 43.98 3.16
6420 7101 9.605275 TGAAAACTCTCAAGATAATGACCTATG 57.395 33.333 0.00 0.00 0.00 2.23
6466 7149 6.537566 CATGGCGAGTATTTCATATTGCTAC 58.462 40.000 0.00 0.00 0.00 3.58
6476 7159 3.798337 CCAATTTGCATGGCGAGTATTTC 59.202 43.478 0.00 0.00 0.00 2.17
6485 7168 1.805943 GAACCAACCAATTTGCATGGC 59.194 47.619 14.93 0.00 41.89 4.40
6488 7171 5.623169 AGAATTGAACCAACCAATTTGCAT 58.377 33.333 0.00 0.00 42.35 3.96
6593 7276 5.537188 TGGATTTTGGTTTTATGCACTCAC 58.463 37.500 0.00 0.00 0.00 3.51
6626 7309 2.380084 TTCCAATGTAGCGTGTCTCC 57.620 50.000 0.00 0.00 0.00 3.71
6633 7316 5.856126 TTCAACTAGTTTCCAATGTAGCG 57.144 39.130 5.07 0.00 0.00 4.26
6746 7429 0.101579 GAGTAGGAGCGAGCAAGTCC 59.898 60.000 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.