Multiple sequence alignment - TraesCS7A01G291400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G291400 chr7A 100.000 2468 0 0 1 2468 355332941 355335408 0.000000e+00 4558.0
1 TraesCS7A01G291400 chr7A 93.297 2178 125 6 3 2159 355324721 355326898 0.000000e+00 3193.0
2 TraesCS7A01G291400 chr7A 89.239 539 51 5 1627 2160 108005749 108006285 0.000000e+00 667.0
3 TraesCS7A01G291400 chr7A 89.474 532 48 6 1627 2153 107956799 107957327 0.000000e+00 665.0
4 TraesCS7A01G291400 chr7A 94.236 347 20 0 1 347 383981905 383981559 4.670000e-147 531.0
5 TraesCS7A01G291400 chr7A 93.948 347 21 0 1 347 383965429 383965083 2.170000e-145 525.0
6 TraesCS7A01G291400 chr7A 96.129 310 11 1 2159 2468 135879720 135880028 2.830000e-139 505.0
7 TraesCS7A01G291400 chr7A 95.806 310 12 1 2159 2468 117915108 117914800 1.320000e-137 499.0
8 TraesCS7A01G291400 chr6A 85.158 1873 203 46 317 2159 509613460 509615287 0.000000e+00 1849.0
9 TraesCS7A01G291400 chr6A 92.120 1269 95 4 79 1345 487883347 487882082 0.000000e+00 1784.0
10 TraesCS7A01G291400 chr6A 89.681 1347 123 11 1 1345 487891570 487890238 0.000000e+00 1703.0
11 TraesCS7A01G291400 chr6A 88.000 75 9 0 1360 1434 305859158 305859084 3.380000e-14 89.8
12 TraesCS7A01G291400 chr5A 91.080 1278 109 4 70 1345 337419842 337418568 0.000000e+00 1724.0
13 TraesCS7A01G291400 chr5A 89.777 538 47 6 1627 2159 382435493 382436027 0.000000e+00 682.0
14 TraesCS7A01G291400 chr5A 89.239 539 49 7 1627 2160 382443318 382443852 0.000000e+00 665.0
15 TraesCS7A01G291400 chr5A 81.198 718 101 27 1459 2160 308153553 308152854 4.640000e-152 547.0
16 TraesCS7A01G291400 chr5A 79.458 701 88 39 1497 2159 57281509 57280827 1.740000e-121 446.0
17 TraesCS7A01G291400 chr5A 79.030 701 90 40 1497 2159 57246103 57245422 6.310000e-116 427.0
18 TraesCS7A01G291400 chr5A 79.185 687 88 38 1510 2159 57313643 57312975 2.270000e-115 425.0
19 TraesCS7A01G291400 chr5A 94.737 76 3 1 1359 1434 102243845 102243919 1.550000e-22 117.0
20 TraesCS7A01G291400 chr5A 92.105 76 5 1 1359 1434 102235813 102235887 3.360000e-19 106.0
21 TraesCS7A01G291400 chr1A 89.829 1347 120 11 1 1345 69757089 69758420 0.000000e+00 1712.0
22 TraesCS7A01G291400 chr1A 90.923 1278 110 5 70 1345 229887186 229888459 0.000000e+00 1712.0
23 TraesCS7A01G291400 chr1A 90.562 1282 115 5 63 1341 229895231 229896509 0.000000e+00 1692.0
24 TraesCS7A01G291400 chr1A 84.536 291 40 5 68 355 568941227 568940939 1.440000e-72 283.0
25 TraesCS7A01G291400 chr1A 90.667 75 4 1 1360 1434 156112469 156112540 2.020000e-16 97.1
26 TraesCS7A01G291400 chr2A 89.607 1347 122 12 1 1345 457328203 457326873 0.000000e+00 1696.0
27 TraesCS7A01G291400 chr2A 85.714 539 58 17 1557 2084 243867577 243868107 3.590000e-153 551.0
28 TraesCS7A01G291400 chr2A 88.372 86 3 6 1352 1433 465617829 465617747 2.020000e-16 97.1
29 TraesCS7A01G291400 chr3A 88.730 559 35 13 1627 2159 95567872 95568428 0.000000e+00 658.0
30 TraesCS7A01G291400 chr3A 88.551 559 36 14 1627 2159 95578652 95579208 0.000000e+00 652.0
31 TraesCS7A01G291400 chr3A 95.115 348 15 2 1 347 372234744 372235090 4.640000e-152 547.0
32 TraesCS7A01G291400 chr3A 95.806 310 12 1 2159 2468 336727067 336726759 1.320000e-137 499.0
33 TraesCS7A01G291400 chr3A 80.967 662 94 30 1510 2162 212804306 212804944 1.700000e-136 496.0
34 TraesCS7A01G291400 chr3A 80.029 681 98 32 1495 2155 368185632 368184970 1.030000e-128 470.0
35 TraesCS7A01G291400 chr3A 90.789 76 6 1 1360 1434 463563995 463563920 1.560000e-17 100.0
36 TraesCS7A01G291400 chr4A 80.328 732 104 27 1462 2159 274395043 274394318 3.640000e-143 518.0
37 TraesCS7A01G291400 chr4A 95.793 309 12 1 2159 2467 153555048 153555355 4.740000e-137 497.0
38 TraesCS7A01G291400 chr4A 75.510 931 146 60 1277 2159 322923254 322924150 4.980000e-102 381.0
39 TraesCS7A01G291400 chr6D 96.129 310 11 1 2159 2468 81711130 81710822 2.830000e-139 505.0
40 TraesCS7A01G291400 chr6D 76.479 727 126 36 1459 2159 125385116 125385823 1.090000e-93 353.0
41 TraesCS7A01G291400 chr6D 76.580 696 124 28 1492 2159 125394487 125395171 1.820000e-91 346.0
42 TraesCS7A01G291400 chr6D 75.697 251 43 13 1 243 170846669 170846429 2.590000e-20 110.0
43 TraesCS7A01G291400 chr5D 96.117 309 11 1 2159 2467 360400018 360400325 1.020000e-138 503.0
44 TraesCS7A01G291400 chr3D 95.820 311 10 3 2159 2468 156589293 156589601 1.320000e-137 499.0
45 TraesCS7A01G291400 chr3D 95.820 311 10 3 2159 2468 470747058 470746750 1.320000e-137 499.0
46 TraesCS7A01G291400 chr3D 95.806 310 10 3 2159 2467 126006806 126007113 4.740000e-137 497.0
47 TraesCS7A01G291400 chr3D 76.712 730 118 36 1459 2159 407239726 407239020 2.330000e-95 359.0
48 TraesCS7A01G291400 chr3D 79.228 337 47 18 1 322 196596158 196596486 1.920000e-51 213.0
49 TraesCS7A01G291400 chr3D 79.538 303 44 15 1 293 196604118 196604412 1.500000e-47 200.0
50 TraesCS7A01G291400 chr7D 76.724 696 117 32 1495 2159 343666001 343666682 1.820000e-91 346.0
51 TraesCS7A01G291400 chr7D 79.822 337 45 19 1 322 104766465 104766137 8.880000e-55 224.0
52 TraesCS7A01G291400 chr7D 79.525 337 46 18 1 322 431803526 431803198 4.130000e-53 219.0
53 TraesCS7A01G291400 chr7D 96.552 58 1 1 1277 1334 316749456 316749512 7.270000e-16 95.3
54 TraesCS7A01G291400 chr4D 78.378 259 36 15 1 248 168859137 168858888 1.530000e-32 150.0
55 TraesCS7A01G291400 chr4D 77.992 259 37 16 1 248 205399040 205399289 7.110000e-31 145.0
56 TraesCS7A01G291400 chr4D 77.606 259 38 15 1 248 205392784 205392535 3.310000e-29 139.0
57 TraesCS7A01G291400 chr1D 76.271 236 42 10 1 233 282834415 282834639 2.010000e-21 113.0
58 TraesCS7A01G291400 chr1D 77.073 205 32 13 1 196 196842005 196841807 1.210000e-18 104.0
59 TraesCS7A01G291400 chr1D 76.471 204 35 11 1 196 199293510 199293312 5.620000e-17 99.0
60 TraesCS7A01G291400 chr2B 100.000 48 0 0 1378 1425 342308618 342308571 3.380000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G291400 chr7A 355332941 355335408 2467 False 4558 4558 100.000 1 2468 1 chr7A.!!$F5 2467
1 TraesCS7A01G291400 chr7A 355324721 355326898 2177 False 3193 3193 93.297 3 2159 1 chr7A.!!$F4 2156
2 TraesCS7A01G291400 chr7A 108005749 108006285 536 False 667 667 89.239 1627 2160 1 chr7A.!!$F2 533
3 TraesCS7A01G291400 chr7A 107956799 107957327 528 False 665 665 89.474 1627 2153 1 chr7A.!!$F1 526
4 TraesCS7A01G291400 chr6A 509613460 509615287 1827 False 1849 1849 85.158 317 2159 1 chr6A.!!$F1 1842
5 TraesCS7A01G291400 chr6A 487882082 487883347 1265 True 1784 1784 92.120 79 1345 1 chr6A.!!$R2 1266
6 TraesCS7A01G291400 chr6A 487890238 487891570 1332 True 1703 1703 89.681 1 1345 1 chr6A.!!$R3 1344
7 TraesCS7A01G291400 chr5A 337418568 337419842 1274 True 1724 1724 91.080 70 1345 1 chr5A.!!$R5 1275
8 TraesCS7A01G291400 chr5A 382435493 382436027 534 False 682 682 89.777 1627 2159 1 chr5A.!!$F3 532
9 TraesCS7A01G291400 chr5A 382443318 382443852 534 False 665 665 89.239 1627 2160 1 chr5A.!!$F4 533
10 TraesCS7A01G291400 chr5A 308152854 308153553 699 True 547 547 81.198 1459 2160 1 chr5A.!!$R4 701
11 TraesCS7A01G291400 chr5A 57280827 57281509 682 True 446 446 79.458 1497 2159 1 chr5A.!!$R2 662
12 TraesCS7A01G291400 chr5A 57245422 57246103 681 True 427 427 79.030 1497 2159 1 chr5A.!!$R1 662
13 TraesCS7A01G291400 chr5A 57312975 57313643 668 True 425 425 79.185 1510 2159 1 chr5A.!!$R3 649
14 TraesCS7A01G291400 chr1A 69757089 69758420 1331 False 1712 1712 89.829 1 1345 1 chr1A.!!$F1 1344
15 TraesCS7A01G291400 chr1A 229887186 229888459 1273 False 1712 1712 90.923 70 1345 1 chr1A.!!$F3 1275
16 TraesCS7A01G291400 chr1A 229895231 229896509 1278 False 1692 1692 90.562 63 1341 1 chr1A.!!$F4 1278
17 TraesCS7A01G291400 chr2A 457326873 457328203 1330 True 1696 1696 89.607 1 1345 1 chr2A.!!$R1 1344
18 TraesCS7A01G291400 chr2A 243867577 243868107 530 False 551 551 85.714 1557 2084 1 chr2A.!!$F1 527
19 TraesCS7A01G291400 chr3A 95567872 95568428 556 False 658 658 88.730 1627 2159 1 chr3A.!!$F1 532
20 TraesCS7A01G291400 chr3A 95578652 95579208 556 False 652 652 88.551 1627 2159 1 chr3A.!!$F2 532
21 TraesCS7A01G291400 chr3A 212804306 212804944 638 False 496 496 80.967 1510 2162 1 chr3A.!!$F3 652
22 TraesCS7A01G291400 chr3A 368184970 368185632 662 True 470 470 80.029 1495 2155 1 chr3A.!!$R2 660
23 TraesCS7A01G291400 chr4A 274394318 274395043 725 True 518 518 80.328 1462 2159 1 chr4A.!!$R1 697
24 TraesCS7A01G291400 chr4A 322923254 322924150 896 False 381 381 75.510 1277 2159 1 chr4A.!!$F2 882
25 TraesCS7A01G291400 chr6D 125385116 125385823 707 False 353 353 76.479 1459 2159 1 chr6D.!!$F1 700
26 TraesCS7A01G291400 chr6D 125394487 125395171 684 False 346 346 76.580 1492 2159 1 chr6D.!!$F2 667
27 TraesCS7A01G291400 chr3D 407239020 407239726 706 True 359 359 76.712 1459 2159 1 chr3D.!!$R1 700
28 TraesCS7A01G291400 chr7D 343666001 343666682 681 False 346 346 76.724 1495 2159 1 chr7D.!!$F2 664

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
262 265 0.168348 AGATGTTCGAGGTCACGACG 59.832 55.0 0.0 0.0 41.97 5.12 F
541 544 0.604073 TGGCGTAATCCGAGTCAACA 59.396 50.0 0.0 0.0 39.56 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1094 1098 0.106335 CGACGCCTCTACCTCTCCTA 59.894 60.0 0.0 0.0 0.00 2.94 R
2411 2552 0.034337 GGGTGCTAGTGTTTCCACGA 59.966 55.0 0.0 0.0 46.56 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 1.839296 TGTCCCATGTGTCGGTGGA 60.839 57.895 0.00 0.00 37.72 4.02
76 77 0.179150 TGCACGAAACAAACAGGCAC 60.179 50.000 0.00 0.00 0.00 5.01
206 209 6.908029 AGAGGGAAGTAGAGGAAGTAGTAGTA 59.092 42.308 0.00 0.00 0.00 1.82
262 265 0.168348 AGATGTTCGAGGTCACGACG 59.832 55.000 0.00 0.00 41.97 5.12
484 487 0.798776 CCGGTCGTGTAGTCGTACTT 59.201 55.000 0.00 0.00 0.00 2.24
538 541 0.892755 ACTTGGCGTAATCCGAGTCA 59.107 50.000 0.00 0.00 45.52 3.41
541 544 0.604073 TGGCGTAATCCGAGTCAACA 59.396 50.000 0.00 0.00 39.56 3.33
582 585 1.295746 GTCGAACTTGGAGGGACCC 59.704 63.158 0.59 0.59 38.00 4.46
666 669 1.267121 ACTTCCATGTAGACAGCCGT 58.733 50.000 0.00 0.00 0.00 5.68
695 698 6.042437 ACTTGATGCATCATCCTATGTAGTCA 59.958 38.462 29.13 9.24 39.87 3.41
698 701 8.315220 TGATGCATCATCCTATGTAGTCATAT 57.685 34.615 25.42 0.00 39.87 1.78
738 742 2.421073 CGGTGGTAGTCATACTCGAACA 59.579 50.000 0.00 0.00 32.12 3.18
768 772 1.486310 CGAATCCTGGATGGTCTTGGA 59.514 52.381 10.54 0.00 37.07 3.53
784 788 1.920835 GGAGGTTCTGGAGCAGGGT 60.921 63.158 0.00 0.00 31.51 4.34
833 837 3.192001 GGACTTGAGGTATGTGTGACGTA 59.808 47.826 0.00 0.00 0.00 3.57
922 926 0.657840 GCGAACAACACAGAAGCAGT 59.342 50.000 0.00 0.00 0.00 4.40
989 993 3.637273 GGCACCGGAGTTGGGTCT 61.637 66.667 9.46 0.00 34.97 3.85
1069 1073 4.393155 TCGGCGCAACTGGAGCAT 62.393 61.111 10.83 0.00 45.03 3.79
1111 1115 1.820090 GCATAGGAGAGGTAGAGGCGT 60.820 57.143 0.00 0.00 0.00 5.68
1136 1140 2.501128 CGGCGACAGGATGGACAT 59.499 61.111 0.00 0.00 43.62 3.06
1153 1157 2.894257 ATTGGCGACAGGGACAGCA 61.894 57.895 0.00 0.00 44.54 4.41
1176 1180 3.796443 CGTCGGACCGAAGAGCGA 61.796 66.667 23.35 0.00 44.57 4.93
1335 1340 3.615811 AGAGGGAGGAGGGCCACA 61.616 66.667 6.18 0.00 36.29 4.17
1651 1735 4.796265 AGAGAGGGTTAGGGATGGAATTTT 59.204 41.667 0.00 0.00 0.00 1.82
1715 1800 4.963276 TCTGTGAAAATAGAAATGGCCG 57.037 40.909 0.00 0.00 0.00 6.13
1716 1801 3.128589 TCTGTGAAAATAGAAATGGCCGC 59.871 43.478 0.00 0.00 0.00 6.53
2160 2301 1.600107 GGTCTTGGGGCGTCACATA 59.400 57.895 0.00 0.00 0.00 2.29
2161 2302 0.180406 GGTCTTGGGGCGTCACATAT 59.820 55.000 0.00 0.00 0.00 1.78
2163 2304 2.365582 GTCTTGGGGCGTCACATATTT 58.634 47.619 0.00 0.00 0.00 1.40
2164 2305 2.354821 GTCTTGGGGCGTCACATATTTC 59.645 50.000 0.00 0.00 0.00 2.17
2165 2306 1.676006 CTTGGGGCGTCACATATTTCC 59.324 52.381 0.00 0.00 0.00 3.13
2166 2307 0.916086 TGGGGCGTCACATATTTCCT 59.084 50.000 0.00 0.00 0.00 3.36
2167 2308 1.283613 TGGGGCGTCACATATTTCCTT 59.716 47.619 0.00 0.00 0.00 3.36
2168 2309 1.947456 GGGGCGTCACATATTTCCTTC 59.053 52.381 0.00 0.00 0.00 3.46
2169 2310 2.421529 GGGGCGTCACATATTTCCTTCT 60.422 50.000 0.00 0.00 0.00 2.85
2170 2311 3.279434 GGGCGTCACATATTTCCTTCTT 58.721 45.455 0.00 0.00 0.00 2.52
2171 2312 3.694566 GGGCGTCACATATTTCCTTCTTT 59.305 43.478 0.00 0.00 0.00 2.52
2172 2313 4.201920 GGGCGTCACATATTTCCTTCTTTC 60.202 45.833 0.00 0.00 0.00 2.62
2173 2314 4.394920 GGCGTCACATATTTCCTTCTTTCA 59.605 41.667 0.00 0.00 0.00 2.69
2174 2315 5.066505 GGCGTCACATATTTCCTTCTTTCAT 59.933 40.000 0.00 0.00 0.00 2.57
2175 2316 6.260050 GGCGTCACATATTTCCTTCTTTCATA 59.740 38.462 0.00 0.00 0.00 2.15
2176 2317 7.041098 GGCGTCACATATTTCCTTCTTTCATAT 60.041 37.037 0.00 0.00 0.00 1.78
2177 2318 8.012241 GCGTCACATATTTCCTTCTTTCATATC 58.988 37.037 0.00 0.00 0.00 1.63
2178 2319 9.045223 CGTCACATATTTCCTTCTTTCATATCA 57.955 33.333 0.00 0.00 0.00 2.15
2189 2330 8.632679 TCCTTCTTTCATATCAATAATTGCACC 58.367 33.333 0.00 0.00 0.00 5.01
2190 2331 8.415553 CCTTCTTTCATATCAATAATTGCACCA 58.584 33.333 0.00 0.00 0.00 4.17
2191 2332 9.806203 CTTCTTTCATATCAATAATTGCACCAA 57.194 29.630 0.00 0.00 0.00 3.67
2193 2334 9.970395 TCTTTCATATCAATAATTGCACCAATC 57.030 29.630 0.00 0.00 32.43 2.67
2194 2335 8.800231 TTTCATATCAATAATTGCACCAATCG 57.200 30.769 0.00 0.00 32.43 3.34
2195 2336 7.509141 TCATATCAATAATTGCACCAATCGT 57.491 32.000 0.00 0.00 32.43 3.73
2196 2337 7.939782 TCATATCAATAATTGCACCAATCGTT 58.060 30.769 0.00 0.00 32.43 3.85
2197 2338 8.075574 TCATATCAATAATTGCACCAATCGTTC 58.924 33.333 0.00 0.00 32.43 3.95
2198 2339 5.895636 TCAATAATTGCACCAATCGTTCT 57.104 34.783 0.00 0.00 32.43 3.01
2199 2340 5.639757 TCAATAATTGCACCAATCGTTCTG 58.360 37.500 0.00 0.00 32.43 3.02
2200 2341 5.414144 TCAATAATTGCACCAATCGTTCTGA 59.586 36.000 0.00 0.00 32.43 3.27
2201 2342 3.837213 AATTGCACCAATCGTTCTGAG 57.163 42.857 0.00 0.00 32.43 3.35
2202 2343 1.522668 TTGCACCAATCGTTCTGAGG 58.477 50.000 0.00 0.00 0.00 3.86
2203 2344 0.684535 TGCACCAATCGTTCTGAGGA 59.315 50.000 0.00 0.00 0.00 3.71
2204 2345 1.071542 TGCACCAATCGTTCTGAGGAA 59.928 47.619 0.00 0.00 0.00 3.36
2205 2346 2.151202 GCACCAATCGTTCTGAGGAAA 58.849 47.619 0.00 0.00 32.81 3.13
2206 2347 2.160417 GCACCAATCGTTCTGAGGAAAG 59.840 50.000 0.00 0.00 32.81 2.62
2207 2348 2.744202 CACCAATCGTTCTGAGGAAAGG 59.256 50.000 0.00 0.00 33.04 3.11
2208 2349 2.372172 ACCAATCGTTCTGAGGAAAGGT 59.628 45.455 0.00 0.00 33.04 3.50
2209 2350 3.003480 CCAATCGTTCTGAGGAAAGGTC 58.997 50.000 0.00 0.00 33.04 3.85
2210 2351 3.307059 CCAATCGTTCTGAGGAAAGGTCT 60.307 47.826 0.00 0.00 33.04 3.85
2211 2352 4.081642 CCAATCGTTCTGAGGAAAGGTCTA 60.082 45.833 0.00 0.00 33.04 2.59
2212 2353 4.722361 ATCGTTCTGAGGAAAGGTCTAC 57.278 45.455 0.00 0.00 33.04 2.59
2213 2354 2.824341 TCGTTCTGAGGAAAGGTCTACC 59.176 50.000 0.00 0.00 33.04 3.18
2214 2355 2.561419 CGTTCTGAGGAAAGGTCTACCA 59.439 50.000 1.26 0.00 38.89 3.25
2215 2356 3.006537 CGTTCTGAGGAAAGGTCTACCAA 59.993 47.826 1.26 0.00 38.89 3.67
2216 2357 4.570930 GTTCTGAGGAAAGGTCTACCAAG 58.429 47.826 1.26 0.00 38.89 3.61
2217 2358 4.127918 TCTGAGGAAAGGTCTACCAAGA 57.872 45.455 1.26 0.00 38.89 3.02
2218 2359 4.489737 TCTGAGGAAAGGTCTACCAAGAA 58.510 43.478 1.26 0.00 38.89 2.52
2219 2360 5.094387 TCTGAGGAAAGGTCTACCAAGAAT 58.906 41.667 1.26 0.00 38.89 2.40
2220 2361 6.261435 TCTGAGGAAAGGTCTACCAAGAATA 58.739 40.000 1.26 0.00 38.89 1.75
2221 2362 6.729100 TCTGAGGAAAGGTCTACCAAGAATAA 59.271 38.462 1.26 0.00 38.89 1.40
2222 2363 7.403231 TCTGAGGAAAGGTCTACCAAGAATAAT 59.597 37.037 1.26 0.00 38.89 1.28
2223 2364 8.618240 TGAGGAAAGGTCTACCAAGAATAATA 57.382 34.615 1.26 0.00 38.89 0.98
2224 2365 8.705594 TGAGGAAAGGTCTACCAAGAATAATAG 58.294 37.037 1.26 0.00 38.89 1.73
2225 2366 8.035448 AGGAAAGGTCTACCAAGAATAATAGG 57.965 38.462 1.26 0.00 38.89 2.57
2226 2367 7.849904 AGGAAAGGTCTACCAAGAATAATAGGA 59.150 37.037 1.26 0.00 38.89 2.94
2227 2368 7.932491 GGAAAGGTCTACCAAGAATAATAGGAC 59.068 40.741 1.26 0.00 38.89 3.85
2228 2369 7.989947 AAGGTCTACCAAGAATAATAGGACA 57.010 36.000 1.26 0.00 38.89 4.02
2229 2370 7.989947 AGGTCTACCAAGAATAATAGGACAA 57.010 36.000 1.26 0.00 38.89 3.18
2230 2371 8.024145 AGGTCTACCAAGAATAATAGGACAAG 57.976 38.462 1.26 0.00 38.89 3.16
2231 2372 7.624077 AGGTCTACCAAGAATAATAGGACAAGT 59.376 37.037 1.26 0.00 38.89 3.16
2232 2373 8.921205 GGTCTACCAAGAATAATAGGACAAGTA 58.079 37.037 0.00 0.00 32.16 2.24
2233 2374 9.968870 GTCTACCAAGAATAATAGGACAAGTAG 57.031 37.037 0.00 0.00 32.16 2.57
2234 2375 9.144298 TCTACCAAGAATAATAGGACAAGTAGG 57.856 37.037 0.00 0.00 0.00 3.18
2235 2376 7.989947 ACCAAGAATAATAGGACAAGTAGGA 57.010 36.000 0.00 0.00 0.00 2.94
2236 2377 8.568617 ACCAAGAATAATAGGACAAGTAGGAT 57.431 34.615 0.00 0.00 0.00 3.24
2237 2378 9.004231 ACCAAGAATAATAGGACAAGTAGGATT 57.996 33.333 0.00 0.00 0.00 3.01
2238 2379 9.277783 CCAAGAATAATAGGACAAGTAGGATTG 57.722 37.037 0.00 0.00 36.22 2.67
2239 2380 8.778358 CAAGAATAATAGGACAAGTAGGATTGC 58.222 37.037 0.00 0.00 33.28 3.56
2240 2381 8.034313 AGAATAATAGGACAAGTAGGATTGCA 57.966 34.615 0.00 0.00 33.28 4.08
2241 2382 8.494433 AGAATAATAGGACAAGTAGGATTGCAA 58.506 33.333 0.00 0.00 33.28 4.08
2242 2383 9.289782 GAATAATAGGACAAGTAGGATTGCAAT 57.710 33.333 12.83 12.83 33.28 3.56
2243 2384 8.854614 ATAATAGGACAAGTAGGATTGCAATC 57.145 34.615 27.91 27.91 33.28 2.67
2244 2385 4.851639 AGGACAAGTAGGATTGCAATCT 57.148 40.909 32.48 22.35 35.73 2.40
2245 2386 5.957771 AGGACAAGTAGGATTGCAATCTA 57.042 39.130 32.48 21.48 35.73 1.98
2246 2387 6.506538 AGGACAAGTAGGATTGCAATCTAT 57.493 37.500 32.48 24.56 35.73 1.98
2247 2388 7.618019 AGGACAAGTAGGATTGCAATCTATA 57.382 36.000 32.48 23.68 35.73 1.31
2248 2389 8.212259 AGGACAAGTAGGATTGCAATCTATAT 57.788 34.615 32.48 20.45 35.73 0.86
2249 2390 8.317679 AGGACAAGTAGGATTGCAATCTATATC 58.682 37.037 32.48 21.20 35.73 1.63
2250 2391 8.097038 GGACAAGTAGGATTGCAATCTATATCA 58.903 37.037 32.48 13.15 35.73 2.15
2251 2392 9.494271 GACAAGTAGGATTGCAATCTATATCAA 57.506 33.333 32.48 12.25 35.73 2.57
2252 2393 9.499479 ACAAGTAGGATTGCAATCTATATCAAG 57.501 33.333 32.48 19.79 35.73 3.02
2253 2394 9.716531 CAAGTAGGATTGCAATCTATATCAAGA 57.283 33.333 32.48 8.63 35.73 3.02
2255 2396 9.717942 AGTAGGATTGCAATCTATATCAAGAAC 57.282 33.333 32.48 17.00 35.73 3.01
2256 2397 9.494271 GTAGGATTGCAATCTATATCAAGAACA 57.506 33.333 32.48 6.84 35.73 3.18
2257 2398 8.985315 AGGATTGCAATCTATATCAAGAACAA 57.015 30.769 32.48 0.00 35.73 2.83
2258 2399 9.584008 AGGATTGCAATCTATATCAAGAACAAT 57.416 29.630 32.48 0.00 35.73 2.71
2259 2400 9.622004 GGATTGCAATCTATATCAAGAACAATG 57.378 33.333 32.48 0.00 35.73 2.82
2270 2411 6.683974 ATCAAGAACAATGAAATCTACGGG 57.316 37.500 0.00 0.00 0.00 5.28
2271 2412 4.394920 TCAAGAACAATGAAATCTACGGGC 59.605 41.667 0.00 0.00 0.00 6.13
2272 2413 3.950397 AGAACAATGAAATCTACGGGCA 58.050 40.909 0.00 0.00 0.00 5.36
2273 2414 3.689649 AGAACAATGAAATCTACGGGCAC 59.310 43.478 0.00 0.00 0.00 5.01
2274 2415 3.066291 ACAATGAAATCTACGGGCACA 57.934 42.857 0.00 0.00 0.00 4.57
2275 2416 3.620488 ACAATGAAATCTACGGGCACAT 58.380 40.909 0.00 0.00 0.00 3.21
2276 2417 4.776349 ACAATGAAATCTACGGGCACATA 58.224 39.130 0.00 0.00 0.00 2.29
2277 2418 5.189928 ACAATGAAATCTACGGGCACATAA 58.810 37.500 0.00 0.00 0.00 1.90
2278 2419 5.827797 ACAATGAAATCTACGGGCACATAAT 59.172 36.000 0.00 0.00 0.00 1.28
2279 2420 6.321181 ACAATGAAATCTACGGGCACATAATT 59.679 34.615 0.00 0.00 0.00 1.40
2280 2421 6.560253 ATGAAATCTACGGGCACATAATTC 57.440 37.500 0.00 0.00 0.00 2.17
2281 2422 4.819630 TGAAATCTACGGGCACATAATTCC 59.180 41.667 0.00 0.00 0.00 3.01
2282 2423 4.706842 AATCTACGGGCACATAATTCCT 57.293 40.909 0.00 0.00 0.00 3.36
2283 2424 5.818678 AATCTACGGGCACATAATTCCTA 57.181 39.130 0.00 0.00 0.00 2.94
2284 2425 6.374417 AATCTACGGGCACATAATTCCTAT 57.626 37.500 0.00 0.00 0.00 2.57
2285 2426 5.818678 TCTACGGGCACATAATTCCTATT 57.181 39.130 0.00 0.00 0.00 1.73
2286 2427 6.182507 TCTACGGGCACATAATTCCTATTT 57.817 37.500 0.00 0.00 0.00 1.40
2287 2428 5.995282 TCTACGGGCACATAATTCCTATTTG 59.005 40.000 0.00 0.00 0.00 2.32
2288 2429 3.317993 ACGGGCACATAATTCCTATTTGC 59.682 43.478 0.00 0.00 41.23 3.68
2289 2430 3.317711 CGGGCACATAATTCCTATTTGCA 59.682 43.478 5.53 0.00 42.95 4.08
2290 2431 4.202101 CGGGCACATAATTCCTATTTGCAA 60.202 41.667 0.00 0.00 42.95 4.08
2291 2432 5.049828 GGGCACATAATTCCTATTTGCAAC 58.950 41.667 0.00 0.00 42.95 4.17
2292 2433 5.395103 GGGCACATAATTCCTATTTGCAACA 60.395 40.000 0.00 0.00 42.95 3.33
2293 2434 6.105333 GGCACATAATTCCTATTTGCAACAA 58.895 36.000 0.00 0.00 42.95 2.83
2294 2435 6.762661 GGCACATAATTCCTATTTGCAACAAT 59.237 34.615 0.00 0.00 42.95 2.71
2295 2436 7.925483 GGCACATAATTCCTATTTGCAACAATA 59.075 33.333 0.00 0.00 42.95 1.90
2296 2437 9.311916 GCACATAATTCCTATTTGCAACAATAA 57.688 29.630 0.00 0.00 41.47 1.40
2303 2444 9.807649 ATTCCTATTTGCAACAATAAGAACATC 57.192 29.630 0.00 0.00 0.00 3.06
2304 2445 8.347004 TCCTATTTGCAACAATAAGAACATCA 57.653 30.769 0.00 0.00 0.00 3.07
2305 2446 8.970020 TCCTATTTGCAACAATAAGAACATCAT 58.030 29.630 0.00 0.00 0.00 2.45
2306 2447 9.590451 CCTATTTGCAACAATAAGAACATCATT 57.410 29.630 0.00 0.00 0.00 2.57
2310 2451 9.624697 TTTGCAACAATAAGAACATCATTACTC 57.375 29.630 0.00 0.00 0.00 2.59
2311 2452 7.761409 TGCAACAATAAGAACATCATTACTCC 58.239 34.615 0.00 0.00 0.00 3.85
2312 2453 7.611467 TGCAACAATAAGAACATCATTACTCCT 59.389 33.333 0.00 0.00 0.00 3.69
2313 2454 8.462016 GCAACAATAAGAACATCATTACTCCTT 58.538 33.333 0.00 0.00 0.00 3.36
2314 2455 9.994432 CAACAATAAGAACATCATTACTCCTTC 57.006 33.333 0.00 0.00 0.00 3.46
2315 2456 8.738645 ACAATAAGAACATCATTACTCCTTCC 57.261 34.615 0.00 0.00 0.00 3.46
2316 2457 7.775561 ACAATAAGAACATCATTACTCCTTCCC 59.224 37.037 0.00 0.00 0.00 3.97
2317 2458 5.779241 AAGAACATCATTACTCCTTCCCA 57.221 39.130 0.00 0.00 0.00 4.37
2318 2459 5.983333 AGAACATCATTACTCCTTCCCAT 57.017 39.130 0.00 0.00 0.00 4.00
2319 2460 7.451731 AAGAACATCATTACTCCTTCCCATA 57.548 36.000 0.00 0.00 0.00 2.74
2320 2461 7.072263 AGAACATCATTACTCCTTCCCATAG 57.928 40.000 0.00 0.00 0.00 2.23
2321 2462 5.832539 ACATCATTACTCCTTCCCATAGG 57.167 43.478 0.00 0.00 36.59 2.57
2322 2463 5.227593 ACATCATTACTCCTTCCCATAGGT 58.772 41.667 0.00 0.00 36.63 3.08
2323 2464 5.672194 ACATCATTACTCCTTCCCATAGGTT 59.328 40.000 0.00 0.00 36.63 3.50
2324 2465 6.160459 ACATCATTACTCCTTCCCATAGGTTT 59.840 38.462 0.00 0.00 36.63 3.27
2325 2466 6.248569 TCATTACTCCTTCCCATAGGTTTC 57.751 41.667 0.00 0.00 36.63 2.78
2326 2467 5.970640 TCATTACTCCTTCCCATAGGTTTCT 59.029 40.000 0.00 0.00 36.63 2.52
2327 2468 6.447084 TCATTACTCCTTCCCATAGGTTTCTT 59.553 38.462 0.00 0.00 36.63 2.52
2328 2469 7.626084 TCATTACTCCTTCCCATAGGTTTCTTA 59.374 37.037 0.00 0.00 36.63 2.10
2329 2470 7.817910 TTACTCCTTCCCATAGGTTTCTTAA 57.182 36.000 0.00 0.00 36.63 1.85
2330 2471 6.910259 ACTCCTTCCCATAGGTTTCTTAAT 57.090 37.500 0.00 0.00 36.63 1.40
2331 2472 9.510062 TTACTCCTTCCCATAGGTTTCTTAATA 57.490 33.333 0.00 0.00 36.63 0.98
2332 2473 8.035448 ACTCCTTCCCATAGGTTTCTTAATAG 57.965 38.462 0.00 0.00 36.63 1.73
2333 2474 7.628101 ACTCCTTCCCATAGGTTTCTTAATAGT 59.372 37.037 0.00 0.00 36.63 2.12
2334 2475 7.802117 TCCTTCCCATAGGTTTCTTAATAGTG 58.198 38.462 0.00 0.00 36.63 2.74
2335 2476 6.998673 CCTTCCCATAGGTTTCTTAATAGTGG 59.001 42.308 0.00 0.00 0.00 4.00
2336 2477 7.147373 CCTTCCCATAGGTTTCTTAATAGTGGA 60.147 40.741 0.00 0.00 0.00 4.02
2337 2478 7.758820 TCCCATAGGTTTCTTAATAGTGGAA 57.241 36.000 0.00 0.00 0.00 3.53
2338 2479 8.344939 TCCCATAGGTTTCTTAATAGTGGAAT 57.655 34.615 0.00 0.00 0.00 3.01
2339 2480 8.437575 TCCCATAGGTTTCTTAATAGTGGAATC 58.562 37.037 0.00 0.00 0.00 2.52
2340 2481 7.665974 CCCATAGGTTTCTTAATAGTGGAATCC 59.334 40.741 0.00 0.00 32.22 3.01
2341 2482 8.217799 CCATAGGTTTCTTAATAGTGGAATCCA 58.782 37.037 0.00 0.00 33.63 3.41
2355 2496 5.486735 TGGAATCCACAAGATGCAAATTT 57.513 34.783 0.00 0.00 34.56 1.82
2356 2497 6.602410 TGGAATCCACAAGATGCAAATTTA 57.398 33.333 0.00 0.00 34.56 1.40
2357 2498 7.002250 TGGAATCCACAAGATGCAAATTTAA 57.998 32.000 0.00 0.00 34.56 1.52
2358 2499 7.448420 TGGAATCCACAAGATGCAAATTTAAA 58.552 30.769 0.00 0.00 34.56 1.52
2359 2500 7.603404 TGGAATCCACAAGATGCAAATTTAAAG 59.397 33.333 0.00 0.00 34.56 1.85
2360 2501 7.818930 GGAATCCACAAGATGCAAATTTAAAGA 59.181 33.333 0.00 0.00 34.56 2.52
2361 2502 9.206870 GAATCCACAAGATGCAAATTTAAAGAA 57.793 29.630 0.00 0.00 34.56 2.52
2362 2503 7.945033 TCCACAAGATGCAAATTTAAAGAAC 57.055 32.000 0.00 0.00 0.00 3.01
2363 2504 7.495901 TCCACAAGATGCAAATTTAAAGAACA 58.504 30.769 0.00 0.00 0.00 3.18
2364 2505 7.984050 TCCACAAGATGCAAATTTAAAGAACAA 59.016 29.630 0.00 0.00 0.00 2.83
2365 2506 8.776470 CCACAAGATGCAAATTTAAAGAACAAT 58.224 29.630 0.00 0.00 0.00 2.71
2366 2507 9.801714 CACAAGATGCAAATTTAAAGAACAATC 57.198 29.630 0.00 0.00 0.00 2.67
2367 2508 9.545105 ACAAGATGCAAATTTAAAGAACAATCA 57.455 25.926 0.00 0.00 0.00 2.57
2370 2511 9.932207 AGATGCAAATTTAAAGAACAATCATCA 57.068 25.926 0.00 0.00 0.00 3.07
2379 2520 8.741101 TTAAAGAACAATCATCAAATTCACGG 57.259 30.769 0.00 0.00 0.00 4.94
2380 2521 6.573664 AAGAACAATCATCAAATTCACGGA 57.426 33.333 0.00 0.00 0.00 4.69
2381 2522 6.573664 AGAACAATCATCAAATTCACGGAA 57.426 33.333 0.00 0.00 0.00 4.30
2382 2523 6.980593 AGAACAATCATCAAATTCACGGAAA 58.019 32.000 0.00 0.00 0.00 3.13
2383 2524 7.432869 AGAACAATCATCAAATTCACGGAAAA 58.567 30.769 0.00 0.00 0.00 2.29
2384 2525 7.382218 AGAACAATCATCAAATTCACGGAAAAC 59.618 33.333 0.00 0.00 0.00 2.43
2385 2526 5.925969 ACAATCATCAAATTCACGGAAAACC 59.074 36.000 0.00 0.00 0.00 3.27
2386 2527 5.720371 ATCATCAAATTCACGGAAAACCA 57.280 34.783 0.00 0.00 0.00 3.67
2387 2528 5.521906 TCATCAAATTCACGGAAAACCAA 57.478 34.783 0.00 0.00 0.00 3.67
2388 2529 5.285651 TCATCAAATTCACGGAAAACCAAC 58.714 37.500 0.00 0.00 0.00 3.77
2389 2530 4.720649 TCAAATTCACGGAAAACCAACA 57.279 36.364 0.00 0.00 0.00 3.33
2390 2531 4.677584 TCAAATTCACGGAAAACCAACAG 58.322 39.130 0.00 0.00 0.00 3.16
2391 2532 4.399618 TCAAATTCACGGAAAACCAACAGA 59.600 37.500 0.00 0.00 0.00 3.41
2392 2533 5.068460 TCAAATTCACGGAAAACCAACAGAT 59.932 36.000 0.00 0.00 0.00 2.90
2393 2534 4.766404 ATTCACGGAAAACCAACAGATC 57.234 40.909 0.00 0.00 0.00 2.75
2394 2535 3.201353 TCACGGAAAACCAACAGATCA 57.799 42.857 0.00 0.00 0.00 2.92
2395 2536 2.875933 TCACGGAAAACCAACAGATCAC 59.124 45.455 0.00 0.00 0.00 3.06
2396 2537 2.616376 CACGGAAAACCAACAGATCACA 59.384 45.455 0.00 0.00 0.00 3.58
2397 2538 2.616842 ACGGAAAACCAACAGATCACAC 59.383 45.455 0.00 0.00 0.00 3.82
2398 2539 2.616376 CGGAAAACCAACAGATCACACA 59.384 45.455 0.00 0.00 0.00 3.72
2399 2540 3.066064 CGGAAAACCAACAGATCACACAA 59.934 43.478 0.00 0.00 0.00 3.33
2400 2541 4.439426 CGGAAAACCAACAGATCACACAAA 60.439 41.667 0.00 0.00 0.00 2.83
2401 2542 5.043248 GGAAAACCAACAGATCACACAAAG 58.957 41.667 0.00 0.00 0.00 2.77
2402 2543 5.394115 GGAAAACCAACAGATCACACAAAGT 60.394 40.000 0.00 0.00 0.00 2.66
2403 2544 5.659440 AAACCAACAGATCACACAAAGTT 57.341 34.783 0.00 0.00 0.00 2.66
2404 2545 5.659440 AACCAACAGATCACACAAAGTTT 57.341 34.783 0.00 0.00 0.00 2.66
2405 2546 5.659440 ACCAACAGATCACACAAAGTTTT 57.341 34.783 0.00 0.00 0.00 2.43
2406 2547 6.036577 ACCAACAGATCACACAAAGTTTTT 57.963 33.333 0.00 0.00 0.00 1.94
2433 2574 2.738587 TGGAAACACTAGCACCCAAA 57.261 45.000 0.00 0.00 33.40 3.28
2434 2575 3.237268 TGGAAACACTAGCACCCAAAT 57.763 42.857 0.00 0.00 33.40 2.32
2435 2576 3.153919 TGGAAACACTAGCACCCAAATC 58.846 45.455 0.00 0.00 33.40 2.17
2436 2577 3.153919 GGAAACACTAGCACCCAAATCA 58.846 45.455 0.00 0.00 0.00 2.57
2437 2578 3.057526 GGAAACACTAGCACCCAAATCAC 60.058 47.826 0.00 0.00 0.00 3.06
2438 2579 2.949177 ACACTAGCACCCAAATCACA 57.051 45.000 0.00 0.00 0.00 3.58
2439 2580 3.439857 ACACTAGCACCCAAATCACAT 57.560 42.857 0.00 0.00 0.00 3.21
2440 2581 4.568072 ACACTAGCACCCAAATCACATA 57.432 40.909 0.00 0.00 0.00 2.29
2441 2582 4.917385 ACACTAGCACCCAAATCACATAA 58.083 39.130 0.00 0.00 0.00 1.90
2442 2583 5.321102 ACACTAGCACCCAAATCACATAAA 58.679 37.500 0.00 0.00 0.00 1.40
2443 2584 5.772672 ACACTAGCACCCAAATCACATAAAA 59.227 36.000 0.00 0.00 0.00 1.52
2444 2585 6.071952 ACACTAGCACCCAAATCACATAAAAG 60.072 38.462 0.00 0.00 0.00 2.27
2445 2586 4.192429 AGCACCCAAATCACATAAAAGC 57.808 40.909 0.00 0.00 0.00 3.51
2446 2587 3.577848 AGCACCCAAATCACATAAAAGCA 59.422 39.130 0.00 0.00 0.00 3.91
2447 2588 4.223477 AGCACCCAAATCACATAAAAGCAT 59.777 37.500 0.00 0.00 0.00 3.79
2448 2589 5.421693 AGCACCCAAATCACATAAAAGCATA 59.578 36.000 0.00 0.00 0.00 3.14
2449 2590 6.098695 AGCACCCAAATCACATAAAAGCATAT 59.901 34.615 0.00 0.00 0.00 1.78
2450 2591 6.421801 GCACCCAAATCACATAAAAGCATATC 59.578 38.462 0.00 0.00 0.00 1.63
2451 2592 7.490840 CACCCAAATCACATAAAAGCATATCA 58.509 34.615 0.00 0.00 0.00 2.15
2452 2593 8.145767 CACCCAAATCACATAAAAGCATATCAT 58.854 33.333 0.00 0.00 0.00 2.45
2453 2594 8.707449 ACCCAAATCACATAAAAGCATATCATT 58.293 29.630 0.00 0.00 0.00 2.57
2454 2595 9.199982 CCCAAATCACATAAAAGCATATCATTC 57.800 33.333 0.00 0.00 0.00 2.67
2455 2596 9.752961 CCAAATCACATAAAAGCATATCATTCA 57.247 29.630 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 2.046314 CGACCCTCGGTTGCCATT 60.046 61.111 0.00 0.00 35.25 3.16
76 77 3.189010 GAACCCCGTGTTTGCACCG 62.189 63.158 0.00 0.00 42.39 4.94
206 209 4.648626 TCCCTCGACGACCCGTGT 62.649 66.667 0.00 0.00 41.37 4.49
262 265 2.654912 CGTGGACGTCAAGTTCCGC 61.655 63.158 18.91 4.99 34.11 5.54
343 346 1.200716 TGACTCGAACGGCTACGAAAT 59.799 47.619 0.00 0.00 44.60 2.17
484 487 0.534203 GTTTCGCCAAGACCACCTCA 60.534 55.000 0.00 0.00 0.00 3.86
510 513 0.038343 TTACGCCAAGTACACCGTCC 60.038 55.000 0.00 0.00 34.56 4.79
538 541 5.974108 AGATTGCCGTGTATAACTACTGTT 58.026 37.500 0.00 0.00 39.98 3.16
541 544 5.105064 ACCAAGATTGCCGTGTATAACTACT 60.105 40.000 0.00 0.00 0.00 2.57
666 669 3.657398 AGGATGATGCATCAAGTTCCA 57.343 42.857 33.80 15.23 42.13 3.53
695 698 0.398098 ACCCCGAGGACACCGAATAT 60.398 55.000 0.00 0.00 36.73 1.28
698 701 1.000739 ATACCCCGAGGACACCGAA 59.999 57.895 0.00 0.00 36.73 4.30
738 742 2.257207 TCCAGGATTCGTCAAGAACCT 58.743 47.619 0.00 0.00 42.39 3.50
768 772 1.280457 CTAACCCTGCTCCAGAACCT 58.720 55.000 0.00 0.00 32.44 3.50
947 951 2.187946 CATCGGTGCTGACCTCCC 59.812 66.667 0.00 0.00 40.58 4.30
1000 1004 4.569180 CGCCCCAAGATCCGGCAT 62.569 66.667 0.00 0.00 43.17 4.40
1094 1098 0.106335 CGACGCCTCTACCTCTCCTA 59.894 60.000 0.00 0.00 0.00 2.94
1136 1140 3.555324 TGCTGTCCCTGTCGCCAA 61.555 61.111 0.00 0.00 0.00 4.52
1161 1165 3.812019 GCTCGCTCTTCGGTCCGA 61.812 66.667 10.71 10.71 39.05 4.55
1311 1316 2.365370 CTCCTCCCTCTGCTGCCT 60.365 66.667 0.00 0.00 0.00 4.75
1554 1599 4.780021 AGAGAGTGAGAGAGAGAAGAGAGT 59.220 45.833 0.00 0.00 0.00 3.24
1715 1800 9.128107 TGAGTTTGAATTTAATCTTTCAATCGC 57.872 29.630 8.63 9.67 40.46 4.58
1771 1859 3.460340 TGGACCTTCCCAAAACTCACTTA 59.540 43.478 0.00 0.00 35.03 2.24
1959 2060 6.774673 TGGTGATTCTCTTTACAACATACCA 58.225 36.000 0.00 0.00 0.00 3.25
2163 2304 8.632679 GGTGCAATTATTGATATGAAAGAAGGA 58.367 33.333 9.36 0.00 0.00 3.36
2164 2305 8.415553 TGGTGCAATTATTGATATGAAAGAAGG 58.584 33.333 9.36 0.00 0.00 3.46
2165 2306 9.806203 TTGGTGCAATTATTGATATGAAAGAAG 57.194 29.630 9.36 0.00 0.00 2.85
2167 2308 9.970395 GATTGGTGCAATTATTGATATGAAAGA 57.030 29.630 9.36 0.00 33.90 2.52
2168 2309 8.908678 CGATTGGTGCAATTATTGATATGAAAG 58.091 33.333 9.36 0.00 33.90 2.62
2169 2310 8.412456 ACGATTGGTGCAATTATTGATATGAAA 58.588 29.630 9.36 0.00 33.90 2.69
2170 2311 7.939782 ACGATTGGTGCAATTATTGATATGAA 58.060 30.769 9.36 0.00 33.90 2.57
2171 2312 7.509141 ACGATTGGTGCAATTATTGATATGA 57.491 32.000 9.36 0.00 33.90 2.15
2172 2313 8.077991 AGAACGATTGGTGCAATTATTGATATG 58.922 33.333 9.36 0.00 33.90 1.78
2173 2314 8.077991 CAGAACGATTGGTGCAATTATTGATAT 58.922 33.333 9.36 0.00 33.90 1.63
2174 2315 7.281999 TCAGAACGATTGGTGCAATTATTGATA 59.718 33.333 9.36 0.00 33.90 2.15
2175 2316 6.095300 TCAGAACGATTGGTGCAATTATTGAT 59.905 34.615 9.36 0.00 33.90 2.57
2176 2317 5.414144 TCAGAACGATTGGTGCAATTATTGA 59.586 36.000 9.36 0.00 33.90 2.57
2177 2318 5.639757 TCAGAACGATTGGTGCAATTATTG 58.360 37.500 0.00 0.00 33.90 1.90
2178 2319 5.163622 CCTCAGAACGATTGGTGCAATTATT 60.164 40.000 0.00 0.00 33.90 1.40
2179 2320 4.336433 CCTCAGAACGATTGGTGCAATTAT 59.664 41.667 0.00 0.00 33.90 1.28
2180 2321 3.689161 CCTCAGAACGATTGGTGCAATTA 59.311 43.478 0.00 0.00 33.90 1.40
2181 2322 2.489329 CCTCAGAACGATTGGTGCAATT 59.511 45.455 0.00 0.00 33.90 2.32
2182 2323 2.086869 CCTCAGAACGATTGGTGCAAT 58.913 47.619 0.00 0.00 36.72 3.56
2183 2324 1.071542 TCCTCAGAACGATTGGTGCAA 59.928 47.619 0.00 0.00 0.00 4.08
2184 2325 0.684535 TCCTCAGAACGATTGGTGCA 59.315 50.000 0.00 0.00 0.00 4.57
2185 2326 1.808411 TTCCTCAGAACGATTGGTGC 58.192 50.000 0.00 0.00 0.00 5.01
2186 2327 2.744202 CCTTTCCTCAGAACGATTGGTG 59.256 50.000 0.00 0.00 0.00 4.17
2187 2328 2.372172 ACCTTTCCTCAGAACGATTGGT 59.628 45.455 0.00 0.00 0.00 3.67
2188 2329 3.003480 GACCTTTCCTCAGAACGATTGG 58.997 50.000 0.00 0.00 0.00 3.16
2189 2330 3.931578 AGACCTTTCCTCAGAACGATTG 58.068 45.455 0.00 0.00 0.00 2.67
2190 2331 4.081586 GGTAGACCTTTCCTCAGAACGATT 60.082 45.833 0.00 0.00 0.00 3.34
2191 2332 3.447944 GGTAGACCTTTCCTCAGAACGAT 59.552 47.826 0.00 0.00 0.00 3.73
2192 2333 2.824341 GGTAGACCTTTCCTCAGAACGA 59.176 50.000 0.00 0.00 0.00 3.85
2193 2334 2.561419 TGGTAGACCTTTCCTCAGAACG 59.439 50.000 0.00 0.00 36.82 3.95
2194 2335 4.283722 TCTTGGTAGACCTTTCCTCAGAAC 59.716 45.833 0.00 0.00 36.82 3.01
2195 2336 4.489737 TCTTGGTAGACCTTTCCTCAGAA 58.510 43.478 0.00 0.00 36.82 3.02
2196 2337 4.127918 TCTTGGTAGACCTTTCCTCAGA 57.872 45.455 0.00 0.00 36.82 3.27
2197 2338 4.891992 TTCTTGGTAGACCTTTCCTCAG 57.108 45.455 0.00 0.00 36.82 3.35
2198 2339 6.945636 TTATTCTTGGTAGACCTTTCCTCA 57.054 37.500 0.00 0.00 36.82 3.86
2199 2340 8.151596 CCTATTATTCTTGGTAGACCTTTCCTC 58.848 40.741 0.00 0.00 36.82 3.71
2200 2341 7.849904 TCCTATTATTCTTGGTAGACCTTTCCT 59.150 37.037 0.00 0.00 36.82 3.36
2201 2342 7.932491 GTCCTATTATTCTTGGTAGACCTTTCC 59.068 40.741 0.00 0.00 36.82 3.13
2202 2343 8.483758 TGTCCTATTATTCTTGGTAGACCTTTC 58.516 37.037 0.00 0.00 36.82 2.62
2203 2344 8.388656 TGTCCTATTATTCTTGGTAGACCTTT 57.611 34.615 0.00 0.00 36.82 3.11
2204 2345 7.989947 TGTCCTATTATTCTTGGTAGACCTT 57.010 36.000 0.00 0.00 36.82 3.50
2205 2346 7.624077 ACTTGTCCTATTATTCTTGGTAGACCT 59.376 37.037 0.00 0.00 36.82 3.85
2206 2347 7.793036 ACTTGTCCTATTATTCTTGGTAGACC 58.207 38.462 0.00 0.00 0.00 3.85
2207 2348 9.968870 CTACTTGTCCTATTATTCTTGGTAGAC 57.031 37.037 0.00 0.00 0.00 2.59
2208 2349 9.144298 CCTACTTGTCCTATTATTCTTGGTAGA 57.856 37.037 0.00 0.00 0.00 2.59
2209 2350 9.144298 TCCTACTTGTCCTATTATTCTTGGTAG 57.856 37.037 0.00 0.00 0.00 3.18
2210 2351 9.670442 ATCCTACTTGTCCTATTATTCTTGGTA 57.330 33.333 0.00 0.00 0.00 3.25
2211 2352 7.989947 TCCTACTTGTCCTATTATTCTTGGT 57.010 36.000 0.00 0.00 0.00 3.67
2212 2353 9.277783 CAATCCTACTTGTCCTATTATTCTTGG 57.722 37.037 0.00 0.00 0.00 3.61
2213 2354 8.778358 GCAATCCTACTTGTCCTATTATTCTTG 58.222 37.037 0.00 0.00 0.00 3.02
2214 2355 8.494433 TGCAATCCTACTTGTCCTATTATTCTT 58.506 33.333 0.00 0.00 0.00 2.52
2215 2356 8.034313 TGCAATCCTACTTGTCCTATTATTCT 57.966 34.615 0.00 0.00 0.00 2.40
2216 2357 8.677148 TTGCAATCCTACTTGTCCTATTATTC 57.323 34.615 0.00 0.00 0.00 1.75
2217 2358 9.289782 GATTGCAATCCTACTTGTCCTATTATT 57.710 33.333 26.03 0.00 0.00 1.40
2218 2359 8.664079 AGATTGCAATCCTACTTGTCCTATTAT 58.336 33.333 31.05 7.78 36.04 1.28
2219 2360 8.034313 AGATTGCAATCCTACTTGTCCTATTA 57.966 34.615 31.05 0.00 36.04 0.98
2220 2361 6.904626 AGATTGCAATCCTACTTGTCCTATT 58.095 36.000 31.05 8.75 36.04 1.73
2221 2362 6.506538 AGATTGCAATCCTACTTGTCCTAT 57.493 37.500 31.05 9.16 36.04 2.57
2222 2363 5.957771 AGATTGCAATCCTACTTGTCCTA 57.042 39.130 31.05 0.00 36.04 2.94
2223 2364 4.851639 AGATTGCAATCCTACTTGTCCT 57.148 40.909 31.05 9.84 36.04 3.85
2224 2365 8.097038 TGATATAGATTGCAATCCTACTTGTCC 58.903 37.037 31.05 14.48 36.04 4.02
2225 2366 9.494271 TTGATATAGATTGCAATCCTACTTGTC 57.506 33.333 31.05 20.42 36.04 3.18
2226 2367 9.499479 CTTGATATAGATTGCAATCCTACTTGT 57.501 33.333 31.05 16.15 36.04 3.16
2227 2368 9.716531 TCTTGATATAGATTGCAATCCTACTTG 57.283 33.333 31.05 16.68 36.04 3.16
2229 2370 9.717942 GTTCTTGATATAGATTGCAATCCTACT 57.282 33.333 31.05 17.81 36.04 2.57
2230 2371 9.494271 TGTTCTTGATATAGATTGCAATCCTAC 57.506 33.333 31.05 19.44 36.04 3.18
2232 2373 8.985315 TTGTTCTTGATATAGATTGCAATCCT 57.015 30.769 31.05 22.22 36.04 3.24
2233 2374 9.622004 CATTGTTCTTGATATAGATTGCAATCC 57.378 33.333 31.05 18.13 36.04 3.01
2244 2385 9.489084 CCCGTAGATTTCATTGTTCTTGATATA 57.511 33.333 0.00 0.00 0.00 0.86
2245 2386 7.041098 GCCCGTAGATTTCATTGTTCTTGATAT 60.041 37.037 0.00 0.00 0.00 1.63
2246 2387 6.260050 GCCCGTAGATTTCATTGTTCTTGATA 59.740 38.462 0.00 0.00 0.00 2.15
2247 2388 5.066505 GCCCGTAGATTTCATTGTTCTTGAT 59.933 40.000 0.00 0.00 0.00 2.57
2248 2389 4.394920 GCCCGTAGATTTCATTGTTCTTGA 59.605 41.667 0.00 0.00 0.00 3.02
2249 2390 4.155826 TGCCCGTAGATTTCATTGTTCTTG 59.844 41.667 0.00 0.00 0.00 3.02
2250 2391 4.156008 GTGCCCGTAGATTTCATTGTTCTT 59.844 41.667 0.00 0.00 0.00 2.52
2251 2392 3.689649 GTGCCCGTAGATTTCATTGTTCT 59.310 43.478 0.00 0.00 0.00 3.01
2252 2393 3.438781 TGTGCCCGTAGATTTCATTGTTC 59.561 43.478 0.00 0.00 0.00 3.18
2253 2394 3.417101 TGTGCCCGTAGATTTCATTGTT 58.583 40.909 0.00 0.00 0.00 2.83
2254 2395 3.066291 TGTGCCCGTAGATTTCATTGT 57.934 42.857 0.00 0.00 0.00 2.71
2255 2396 5.749596 TTATGTGCCCGTAGATTTCATTG 57.250 39.130 0.00 0.00 0.00 2.82
2256 2397 6.016276 GGAATTATGTGCCCGTAGATTTCATT 60.016 38.462 0.00 0.00 0.00 2.57
2257 2398 5.473504 GGAATTATGTGCCCGTAGATTTCAT 59.526 40.000 0.00 0.00 0.00 2.57
2258 2399 4.819630 GGAATTATGTGCCCGTAGATTTCA 59.180 41.667 0.00 0.00 0.00 2.69
2259 2400 5.063880 AGGAATTATGTGCCCGTAGATTTC 58.936 41.667 0.00 0.00 0.00 2.17
2260 2401 5.048846 AGGAATTATGTGCCCGTAGATTT 57.951 39.130 0.00 0.00 0.00 2.17
2261 2402 4.706842 AGGAATTATGTGCCCGTAGATT 57.293 40.909 0.00 0.00 0.00 2.40
2262 2403 6.374417 AATAGGAATTATGTGCCCGTAGAT 57.626 37.500 0.00 0.00 0.00 1.98
2263 2404 5.818678 AATAGGAATTATGTGCCCGTAGA 57.181 39.130 0.00 0.00 0.00 2.59
2264 2405 5.334879 GCAAATAGGAATTATGTGCCCGTAG 60.335 44.000 0.00 0.00 44.16 3.51
2265 2406 4.517453 GCAAATAGGAATTATGTGCCCGTA 59.483 41.667 0.00 0.00 44.16 4.02
2266 2407 3.317993 GCAAATAGGAATTATGTGCCCGT 59.682 43.478 0.00 0.00 44.16 5.28
2267 2408 3.900941 GCAAATAGGAATTATGTGCCCG 58.099 45.455 0.00 0.00 44.16 6.13
2277 2418 9.807649 GATGTTCTTATTGTTGCAAATAGGAAT 57.192 29.630 14.95 4.71 39.12 3.01
2278 2419 8.801299 TGATGTTCTTATTGTTGCAAATAGGAA 58.199 29.630 0.00 6.17 36.39 3.36
2279 2420 8.347004 TGATGTTCTTATTGTTGCAAATAGGA 57.653 30.769 0.00 0.00 0.00 2.94
2280 2421 9.590451 AATGATGTTCTTATTGTTGCAAATAGG 57.410 29.630 0.00 0.00 0.00 2.57
2284 2425 9.624697 GAGTAATGATGTTCTTATTGTTGCAAA 57.375 29.630 0.00 0.00 0.00 3.68
2285 2426 8.243426 GGAGTAATGATGTTCTTATTGTTGCAA 58.757 33.333 0.00 0.00 0.00 4.08
2286 2427 7.611467 AGGAGTAATGATGTTCTTATTGTTGCA 59.389 33.333 0.00 0.00 0.00 4.08
2287 2428 7.989826 AGGAGTAATGATGTTCTTATTGTTGC 58.010 34.615 0.00 0.00 0.00 4.17
2288 2429 9.994432 GAAGGAGTAATGATGTTCTTATTGTTG 57.006 33.333 0.00 0.00 0.00 3.33
2289 2430 9.178758 GGAAGGAGTAATGATGTTCTTATTGTT 57.821 33.333 0.00 0.00 0.00 2.83
2290 2431 7.775561 GGGAAGGAGTAATGATGTTCTTATTGT 59.224 37.037 0.00 0.00 0.00 2.71
2291 2432 7.775093 TGGGAAGGAGTAATGATGTTCTTATTG 59.225 37.037 0.00 0.00 0.00 1.90
2292 2433 7.872138 TGGGAAGGAGTAATGATGTTCTTATT 58.128 34.615 0.00 0.00 0.00 1.40
2293 2434 7.451731 TGGGAAGGAGTAATGATGTTCTTAT 57.548 36.000 0.00 0.00 0.00 1.73
2294 2435 6.884472 TGGGAAGGAGTAATGATGTTCTTA 57.116 37.500 0.00 0.00 0.00 2.10
2295 2436 5.779241 TGGGAAGGAGTAATGATGTTCTT 57.221 39.130 0.00 0.00 0.00 2.52
2296 2437 5.983333 ATGGGAAGGAGTAATGATGTTCT 57.017 39.130 0.00 0.00 0.00 3.01
2297 2438 6.183361 ACCTATGGGAAGGAGTAATGATGTTC 60.183 42.308 0.25 0.00 39.15 3.18
2298 2439 5.672194 ACCTATGGGAAGGAGTAATGATGTT 59.328 40.000 0.25 0.00 39.15 2.71
2299 2440 5.227593 ACCTATGGGAAGGAGTAATGATGT 58.772 41.667 0.25 0.00 39.15 3.06
2300 2441 5.832539 ACCTATGGGAAGGAGTAATGATG 57.167 43.478 0.25 0.00 39.15 3.07
2301 2442 6.621514 AGAAACCTATGGGAAGGAGTAATGAT 59.378 38.462 0.25 0.00 39.15 2.45
2302 2443 5.970640 AGAAACCTATGGGAAGGAGTAATGA 59.029 40.000 0.25 0.00 39.15 2.57
2303 2444 6.253946 AGAAACCTATGGGAAGGAGTAATG 57.746 41.667 0.25 0.00 39.15 1.90
2304 2445 6.910259 AAGAAACCTATGGGAAGGAGTAAT 57.090 37.500 0.25 0.00 39.15 1.89
2305 2446 7.817910 TTAAGAAACCTATGGGAAGGAGTAA 57.182 36.000 0.25 0.00 39.15 2.24
2306 2447 9.155785 CTATTAAGAAACCTATGGGAAGGAGTA 57.844 37.037 0.25 0.00 39.15 2.59
2307 2448 6.910259 ATTAAGAAACCTATGGGAAGGAGT 57.090 37.500 0.25 0.00 39.15 3.85
2308 2449 7.934120 CACTATTAAGAAACCTATGGGAAGGAG 59.066 40.741 0.25 0.00 39.15 3.69
2309 2450 7.147373 CCACTATTAAGAAACCTATGGGAAGGA 60.147 40.741 0.25 0.00 39.15 3.36
2310 2451 6.998673 CCACTATTAAGAAACCTATGGGAAGG 59.001 42.308 0.25 0.00 42.82 3.46
2311 2452 7.802117 TCCACTATTAAGAAACCTATGGGAAG 58.198 38.462 0.25 0.00 36.25 3.46
2312 2453 7.758820 TCCACTATTAAGAAACCTATGGGAA 57.241 36.000 0.25 0.00 36.25 3.97
2313 2454 7.758820 TTCCACTATTAAGAAACCTATGGGA 57.241 36.000 0.25 0.00 36.25 4.37
2314 2455 7.665974 GGATTCCACTATTAAGAAACCTATGGG 59.334 40.741 0.00 0.00 31.65 4.00
2315 2456 8.217799 TGGATTCCACTATTAAGAAACCTATGG 58.782 37.037 0.00 0.00 34.51 2.74
2333 2474 5.486735 AAATTTGCATCTTGTGGATTCCA 57.513 34.783 0.00 0.00 31.27 3.53
2334 2475 7.818930 TCTTTAAATTTGCATCTTGTGGATTCC 59.181 33.333 0.00 0.00 31.27 3.01
2335 2476 8.761575 TCTTTAAATTTGCATCTTGTGGATTC 57.238 30.769 0.00 0.00 31.27 2.52
2336 2477 8.992073 GTTCTTTAAATTTGCATCTTGTGGATT 58.008 29.630 0.00 0.00 31.27 3.01
2337 2478 8.149647 TGTTCTTTAAATTTGCATCTTGTGGAT 58.850 29.630 0.00 0.00 34.51 3.41
2338 2479 7.495901 TGTTCTTTAAATTTGCATCTTGTGGA 58.504 30.769 0.00 0.00 0.00 4.02
2339 2480 7.712264 TGTTCTTTAAATTTGCATCTTGTGG 57.288 32.000 0.00 0.00 0.00 4.17
2340 2481 9.801714 GATTGTTCTTTAAATTTGCATCTTGTG 57.198 29.630 0.00 0.00 0.00 3.33
2341 2482 9.545105 TGATTGTTCTTTAAATTTGCATCTTGT 57.455 25.926 0.00 0.00 0.00 3.16
2344 2485 9.932207 TGATGATTGTTCTTTAAATTTGCATCT 57.068 25.926 0.00 0.00 0.00 2.90
2353 2494 9.190858 CCGTGAATTTGATGATTGTTCTTTAAA 57.809 29.630 0.00 0.00 0.00 1.52
2354 2495 8.572185 TCCGTGAATTTGATGATTGTTCTTTAA 58.428 29.630 0.00 0.00 0.00 1.52
2355 2496 8.105097 TCCGTGAATTTGATGATTGTTCTTTA 57.895 30.769 0.00 0.00 0.00 1.85
2356 2497 6.980593 TCCGTGAATTTGATGATTGTTCTTT 58.019 32.000 0.00 0.00 0.00 2.52
2357 2498 6.573664 TCCGTGAATTTGATGATTGTTCTT 57.426 33.333 0.00 0.00 0.00 2.52
2358 2499 6.573664 TTCCGTGAATTTGATGATTGTTCT 57.426 33.333 0.00 0.00 0.00 3.01
2359 2500 7.359181 GGTTTTCCGTGAATTTGATGATTGTTC 60.359 37.037 0.00 0.00 0.00 3.18
2360 2501 6.423604 GGTTTTCCGTGAATTTGATGATTGTT 59.576 34.615 0.00 0.00 0.00 2.83
2361 2502 5.925969 GGTTTTCCGTGAATTTGATGATTGT 59.074 36.000 0.00 0.00 0.00 2.71
2362 2503 5.925397 TGGTTTTCCGTGAATTTGATGATTG 59.075 36.000 0.00 0.00 44.36 2.67
2363 2504 6.095432 TGGTTTTCCGTGAATTTGATGATT 57.905 33.333 0.00 0.00 44.36 2.57
2364 2505 5.720371 TGGTTTTCCGTGAATTTGATGAT 57.280 34.783 0.00 0.00 44.36 2.45
2365 2506 5.163509 TGTTGGTTTTCCGTGAATTTGATGA 60.164 36.000 0.00 0.00 44.36 2.92
2366 2507 5.046529 TGTTGGTTTTCCGTGAATTTGATG 58.953 37.500 0.00 0.00 44.36 3.07
2367 2508 5.068460 TCTGTTGGTTTTCCGTGAATTTGAT 59.932 36.000 0.00 0.00 44.36 2.57
2368 2509 4.399618 TCTGTTGGTTTTCCGTGAATTTGA 59.600 37.500 0.00 0.00 44.36 2.69
2369 2510 4.677584 TCTGTTGGTTTTCCGTGAATTTG 58.322 39.130 0.00 0.00 44.36 2.32
2370 2511 4.993029 TCTGTTGGTTTTCCGTGAATTT 57.007 36.364 0.00 0.00 44.36 1.82
2371 2512 4.582656 TGATCTGTTGGTTTTCCGTGAATT 59.417 37.500 0.00 0.00 44.36 2.17
2372 2513 4.023193 GTGATCTGTTGGTTTTCCGTGAAT 60.023 41.667 0.00 0.00 44.36 2.57
2373 2514 3.314080 GTGATCTGTTGGTTTTCCGTGAA 59.686 43.478 0.00 0.00 44.36 3.18
2374 2515 2.875933 GTGATCTGTTGGTTTTCCGTGA 59.124 45.455 0.00 0.00 44.36 4.35
2375 2516 2.616376 TGTGATCTGTTGGTTTTCCGTG 59.384 45.455 0.00 0.00 44.36 4.94
2376 2517 2.616842 GTGTGATCTGTTGGTTTTCCGT 59.383 45.455 0.00 0.00 44.36 4.69
2377 2518 2.616376 TGTGTGATCTGTTGGTTTTCCG 59.384 45.455 0.00 0.00 44.36 4.30
2378 2519 4.647424 TTGTGTGATCTGTTGGTTTTCC 57.353 40.909 0.00 0.00 41.14 3.13
2379 2520 5.650543 ACTTTGTGTGATCTGTTGGTTTTC 58.349 37.500 0.00 0.00 0.00 2.29
2380 2521 5.659440 ACTTTGTGTGATCTGTTGGTTTT 57.341 34.783 0.00 0.00 0.00 2.43
2381 2522 5.659440 AACTTTGTGTGATCTGTTGGTTT 57.341 34.783 0.00 0.00 0.00 3.27
2382 2523 5.659440 AAACTTTGTGTGATCTGTTGGTT 57.341 34.783 0.00 0.00 0.00 3.67
2383 2524 5.659440 AAAACTTTGTGTGATCTGTTGGT 57.341 34.783 0.00 0.00 0.00 3.67
2403 2544 5.066634 TGCTAGTGTTTCCACGATTCAAAAA 59.933 36.000 0.00 0.00 46.56 1.94
2404 2545 4.576873 TGCTAGTGTTTCCACGATTCAAAA 59.423 37.500 0.00 0.00 46.56 2.44
2405 2546 4.024387 GTGCTAGTGTTTCCACGATTCAAA 60.024 41.667 0.00 0.00 46.56 2.69
2406 2547 3.496884 GTGCTAGTGTTTCCACGATTCAA 59.503 43.478 0.00 0.00 46.56 2.69
2407 2548 3.064207 GTGCTAGTGTTTCCACGATTCA 58.936 45.455 0.00 0.00 46.56 2.57
2408 2549 2.415512 GGTGCTAGTGTTTCCACGATTC 59.584 50.000 0.00 0.00 46.56 2.52
2409 2550 2.423577 GGTGCTAGTGTTTCCACGATT 58.576 47.619 0.00 0.00 46.56 3.34
2410 2551 1.338769 GGGTGCTAGTGTTTCCACGAT 60.339 52.381 0.00 0.00 46.56 3.73
2411 2552 0.034337 GGGTGCTAGTGTTTCCACGA 59.966 55.000 0.00 0.00 46.56 4.35
2412 2553 0.250124 TGGGTGCTAGTGTTTCCACG 60.250 55.000 0.00 0.00 46.56 4.94
2413 2554 1.975660 TTGGGTGCTAGTGTTTCCAC 58.024 50.000 0.00 0.00 42.17 4.02
2414 2555 2.738587 TTTGGGTGCTAGTGTTTCCA 57.261 45.000 0.00 0.00 0.00 3.53
2415 2556 3.057526 GTGATTTGGGTGCTAGTGTTTCC 60.058 47.826 0.00 0.00 0.00 3.13
2416 2557 3.568007 TGTGATTTGGGTGCTAGTGTTTC 59.432 43.478 0.00 0.00 0.00 2.78
2417 2558 3.561143 TGTGATTTGGGTGCTAGTGTTT 58.439 40.909 0.00 0.00 0.00 2.83
2418 2559 3.222173 TGTGATTTGGGTGCTAGTGTT 57.778 42.857 0.00 0.00 0.00 3.32
2419 2560 2.949177 TGTGATTTGGGTGCTAGTGT 57.051 45.000 0.00 0.00 0.00 3.55
2420 2561 5.895636 TTTATGTGATTTGGGTGCTAGTG 57.104 39.130 0.00 0.00 0.00 2.74
2421 2562 5.105756 GCTTTTATGTGATTTGGGTGCTAGT 60.106 40.000 0.00 0.00 0.00 2.57
2422 2563 5.105797 TGCTTTTATGTGATTTGGGTGCTAG 60.106 40.000 0.00 0.00 0.00 3.42
2423 2564 4.769488 TGCTTTTATGTGATTTGGGTGCTA 59.231 37.500 0.00 0.00 0.00 3.49
2424 2565 3.577848 TGCTTTTATGTGATTTGGGTGCT 59.422 39.130 0.00 0.00 0.00 4.40
2425 2566 3.924144 TGCTTTTATGTGATTTGGGTGC 58.076 40.909 0.00 0.00 0.00 5.01
2426 2567 7.490840 TGATATGCTTTTATGTGATTTGGGTG 58.509 34.615 0.00 0.00 0.00 4.61
2427 2568 7.658525 TGATATGCTTTTATGTGATTTGGGT 57.341 32.000 0.00 0.00 0.00 4.51
2428 2569 9.199982 GAATGATATGCTTTTATGTGATTTGGG 57.800 33.333 0.00 0.00 0.00 4.12
2429 2570 9.752961 TGAATGATATGCTTTTATGTGATTTGG 57.247 29.630 0.00 0.00 0.00 3.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.