Multiple sequence alignment - TraesCS7A01G290800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G290800 chr7A 100.000 2271 0 0 1 2271 352682057 352679787 0.000000e+00 4194
1 TraesCS7A01G290800 chr7A 91.837 490 35 4 1 485 371808172 371808661 0.000000e+00 678
2 TraesCS7A01G290800 chr7A 91.837 490 35 4 1 485 371815839 371816328 0.000000e+00 678
3 TraesCS7A01G290800 chr1D 94.816 1794 81 8 486 2271 254532061 254533850 0.000000e+00 2787
4 TraesCS7A01G290800 chr7B 94.763 1795 80 9 486 2271 662733377 662735166 0.000000e+00 2782
5 TraesCS7A01G290800 chr7B 93.966 1624 82 11 659 2271 90404328 90402710 0.000000e+00 2442
6 TraesCS7A01G290800 chr3B 94.710 1796 82 8 485 2271 201564919 201563128 0.000000e+00 2778
7 TraesCS7A01G290800 chr3A 94.593 1794 85 7 486 2271 672882565 672880776 0.000000e+00 2765
8 TraesCS7A01G290800 chr3A 94.545 1760 84 8 486 2236 695636863 695638619 0.000000e+00 2708
9 TraesCS7A01G290800 chr3A 89.002 491 46 6 1 485 465649356 465649844 3.230000e-168 601
10 TraesCS7A01G290800 chr1B 94.318 1795 88 10 486 2271 633733007 633731218 0.000000e+00 2737
11 TraesCS7A01G290800 chr6B 94.737 1729 80 7 553 2271 615601075 615599348 0.000000e+00 2678
12 TraesCS7A01G290800 chr2A 94.894 1645 72 7 486 2121 543188124 543189765 0.000000e+00 2562
13 TraesCS7A01G290800 chr2A 97.143 70 2 0 486 555 651440375 651440444 3.960000e-23 119
14 TraesCS7A01G290800 chr2A 98.387 62 1 0 486 547 510398789 510398850 2.380000e-20 110
15 TraesCS7A01G290800 chr4A 92.638 489 32 3 1 485 304990970 304990482 0.000000e+00 701
16 TraesCS7A01G290800 chr5A 92.473 465 34 1 22 485 330735464 330735928 0.000000e+00 664
17 TraesCS7A01G290800 chr5A 88.957 489 48 4 1 485 237854933 237855419 1.160000e-167 599
18 TraesCS7A01G290800 chr5A 88.618 492 49 5 1 485 257907559 257908050 1.940000e-165 592
19 TraesCS7A01G290800 chr1A 90.798 489 41 3 1 485 247453090 247452602 0.000000e+00 651
20 TraesCS7A01G290800 chr6A 89.754 488 47 2 1 485 269995792 269996279 2.480000e-174 621


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G290800 chr7A 352679787 352682057 2270 True 4194 4194 100.000 1 2271 1 chr7A.!!$R1 2270
1 TraesCS7A01G290800 chr1D 254532061 254533850 1789 False 2787 2787 94.816 486 2271 1 chr1D.!!$F1 1785
2 TraesCS7A01G290800 chr7B 662733377 662735166 1789 False 2782 2782 94.763 486 2271 1 chr7B.!!$F1 1785
3 TraesCS7A01G290800 chr7B 90402710 90404328 1618 True 2442 2442 93.966 659 2271 1 chr7B.!!$R1 1612
4 TraesCS7A01G290800 chr3B 201563128 201564919 1791 True 2778 2778 94.710 485 2271 1 chr3B.!!$R1 1786
5 TraesCS7A01G290800 chr3A 672880776 672882565 1789 True 2765 2765 94.593 486 2271 1 chr3A.!!$R1 1785
6 TraesCS7A01G290800 chr3A 695636863 695638619 1756 False 2708 2708 94.545 486 2236 1 chr3A.!!$F2 1750
7 TraesCS7A01G290800 chr1B 633731218 633733007 1789 True 2737 2737 94.318 486 2271 1 chr1B.!!$R1 1785
8 TraesCS7A01G290800 chr6B 615599348 615601075 1727 True 2678 2678 94.737 553 2271 1 chr6B.!!$R1 1718
9 TraesCS7A01G290800 chr2A 543188124 543189765 1641 False 2562 2562 94.894 486 2121 1 chr2A.!!$F2 1635

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
445 446 0.035056 CTTTGTGGGATCCGCTCCTT 60.035 55.0 5.45 0.0 44.28 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1460 1472 0.320421 CGTTGATGGGTGTCGAGGTT 60.32 55.0 0.0 0.0 0.0 3.5 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 2.181021 CCAGCGGACGTCTGGTAC 59.819 66.667 27.34 10.38 44.62 3.34
39 40 2.181021 CAGCGGACGTCTGGTACC 59.819 66.667 27.34 4.43 0.00 3.34
40 41 2.035312 AGCGGACGTCTGGTACCT 59.965 61.111 26.78 11.61 0.00 3.08
41 42 2.181021 GCGGACGTCTGGTACCTG 59.819 66.667 25.20 13.33 0.00 4.00
42 43 2.633509 GCGGACGTCTGGTACCTGT 61.634 63.158 25.20 6.42 0.00 4.00
43 44 1.505353 CGGACGTCTGGTACCTGTC 59.495 63.158 16.99 14.58 0.00 3.51
44 45 0.959372 CGGACGTCTGGTACCTGTCT 60.959 60.000 16.99 1.11 0.00 3.41
45 46 0.526662 GGACGTCTGGTACCTGTCTG 59.473 60.000 16.46 9.35 0.00 3.51
46 47 0.109226 GACGTCTGGTACCTGTCTGC 60.109 60.000 14.36 4.73 0.00 4.26
47 48 1.154016 CGTCTGGTACCTGTCTGCG 60.154 63.158 14.36 12.10 0.00 5.18
48 49 1.446272 GTCTGGTACCTGTCTGCGC 60.446 63.158 14.36 0.00 0.00 6.09
49 50 1.906333 TCTGGTACCTGTCTGCGCA 60.906 57.895 10.98 10.98 0.00 6.09
50 51 1.738099 CTGGTACCTGTCTGCGCAC 60.738 63.158 14.36 0.00 0.00 5.34
51 52 2.342279 GGTACCTGTCTGCGCACA 59.658 61.111 5.66 2.50 0.00 4.57
52 53 1.738099 GGTACCTGTCTGCGCACAG 60.738 63.158 18.43 18.43 45.95 3.66
56 57 2.341543 CTGTCTGCGCACAGGACT 59.658 61.111 23.55 0.00 44.59 3.85
57 58 1.735920 CTGTCTGCGCACAGGACTC 60.736 63.158 23.55 4.73 44.59 3.36
58 59 2.340078 GTCTGCGCACAGGACTCA 59.660 61.111 18.10 0.00 44.59 3.41
59 60 1.735920 GTCTGCGCACAGGACTCAG 60.736 63.158 18.10 1.38 44.59 3.35
60 61 2.433838 CTGCGCACAGGACTCAGG 60.434 66.667 5.66 0.00 40.48 3.86
61 62 4.687215 TGCGCACAGGACTCAGGC 62.687 66.667 5.66 0.00 0.00 4.85
63 64 4.767255 CGCACAGGACTCAGGCCC 62.767 72.222 0.00 0.00 0.00 5.80
64 65 4.767255 GCACAGGACTCAGGCCCG 62.767 72.222 0.00 0.00 0.00 6.13
65 66 2.997315 CACAGGACTCAGGCCCGA 60.997 66.667 0.00 0.00 0.00 5.14
66 67 2.681778 ACAGGACTCAGGCCCGAG 60.682 66.667 14.77 14.77 39.05 4.63
67 68 3.465403 CAGGACTCAGGCCCGAGG 61.465 72.222 20.20 2.65 37.34 4.63
77 78 2.032681 GCCCGAGGCCCATGTATC 59.967 66.667 0.00 0.00 44.06 2.24
78 79 2.750350 CCCGAGGCCCATGTATCC 59.250 66.667 0.00 0.00 0.00 2.59
79 80 2.750350 CCGAGGCCCATGTATCCC 59.250 66.667 0.00 0.00 0.00 3.85
80 81 2.750350 CGAGGCCCATGTATCCCC 59.250 66.667 0.00 0.00 0.00 4.81
81 82 1.843376 CGAGGCCCATGTATCCCCT 60.843 63.158 0.00 0.00 0.00 4.79
82 83 1.831652 CGAGGCCCATGTATCCCCTC 61.832 65.000 0.00 0.00 38.92 4.30
83 84 0.768221 GAGGCCCATGTATCCCCTCA 60.768 60.000 0.00 0.00 41.31 3.86
84 85 1.062488 AGGCCCATGTATCCCCTCAC 61.062 60.000 0.00 0.00 0.00 3.51
85 86 1.062488 GGCCCATGTATCCCCTCACT 61.062 60.000 0.00 0.00 0.00 3.41
86 87 0.846693 GCCCATGTATCCCCTCACTT 59.153 55.000 0.00 0.00 0.00 3.16
87 88 1.202818 GCCCATGTATCCCCTCACTTC 60.203 57.143 0.00 0.00 0.00 3.01
88 89 1.070758 CCCATGTATCCCCTCACTTCG 59.929 57.143 0.00 0.00 0.00 3.79
89 90 1.762957 CCATGTATCCCCTCACTTCGT 59.237 52.381 0.00 0.00 0.00 3.85
90 91 2.224066 CCATGTATCCCCTCACTTCGTC 60.224 54.545 0.00 0.00 0.00 4.20
91 92 1.481871 TGTATCCCCTCACTTCGTCC 58.518 55.000 0.00 0.00 0.00 4.79
92 93 0.751452 GTATCCCCTCACTTCGTCCC 59.249 60.000 0.00 0.00 0.00 4.46
93 94 0.398098 TATCCCCTCACTTCGTCCCC 60.398 60.000 0.00 0.00 0.00 4.81
94 95 2.471084 ATCCCCTCACTTCGTCCCCA 62.471 60.000 0.00 0.00 0.00 4.96
95 96 1.995626 CCCCTCACTTCGTCCCCAT 60.996 63.158 0.00 0.00 0.00 4.00
96 97 1.562672 CCCCTCACTTCGTCCCCATT 61.563 60.000 0.00 0.00 0.00 3.16
97 98 0.328258 CCCTCACTTCGTCCCCATTT 59.672 55.000 0.00 0.00 0.00 2.32
98 99 1.453155 CCTCACTTCGTCCCCATTTG 58.547 55.000 0.00 0.00 0.00 2.32
99 100 0.804989 CTCACTTCGTCCCCATTTGC 59.195 55.000 0.00 0.00 0.00 3.68
100 101 0.109532 TCACTTCGTCCCCATTTGCA 59.890 50.000 0.00 0.00 0.00 4.08
101 102 0.240945 CACTTCGTCCCCATTTGCAC 59.759 55.000 0.00 0.00 0.00 4.57
102 103 0.110486 ACTTCGTCCCCATTTGCACT 59.890 50.000 0.00 0.00 0.00 4.40
103 104 1.349688 ACTTCGTCCCCATTTGCACTA 59.650 47.619 0.00 0.00 0.00 2.74
104 105 2.224670 ACTTCGTCCCCATTTGCACTAA 60.225 45.455 0.00 0.00 0.00 2.24
105 106 2.107950 TCGTCCCCATTTGCACTAAG 57.892 50.000 0.00 0.00 0.00 2.18
106 107 1.626321 TCGTCCCCATTTGCACTAAGA 59.374 47.619 0.00 0.00 0.00 2.10
107 108 1.737793 CGTCCCCATTTGCACTAAGAC 59.262 52.381 0.00 0.00 0.00 3.01
108 109 2.615493 CGTCCCCATTTGCACTAAGACT 60.615 50.000 0.00 0.00 0.00 3.24
109 110 3.369052 CGTCCCCATTTGCACTAAGACTA 60.369 47.826 0.00 0.00 0.00 2.59
110 111 4.683400 CGTCCCCATTTGCACTAAGACTAT 60.683 45.833 0.00 0.00 0.00 2.12
111 112 5.452776 CGTCCCCATTTGCACTAAGACTATA 60.453 44.000 0.00 0.00 0.00 1.31
112 113 6.354130 GTCCCCATTTGCACTAAGACTATAA 58.646 40.000 0.00 0.00 0.00 0.98
113 114 6.826741 GTCCCCATTTGCACTAAGACTATAAA 59.173 38.462 0.00 0.00 0.00 1.40
114 115 7.502561 GTCCCCATTTGCACTAAGACTATAAAT 59.497 37.037 0.00 0.00 0.00 1.40
115 116 8.719596 TCCCCATTTGCACTAAGACTATAAATA 58.280 33.333 0.00 0.00 0.00 1.40
116 117 9.003658 CCCCATTTGCACTAAGACTATAAATAG 57.996 37.037 0.00 0.00 36.46 1.73
117 118 9.778741 CCCATTTGCACTAAGACTATAAATAGA 57.221 33.333 4.02 0.00 34.50 1.98
122 123 8.179509 TGCACTAAGACTATAAATAGACCTCC 57.820 38.462 4.02 0.00 34.50 4.30
123 124 8.005388 TGCACTAAGACTATAAATAGACCTCCT 58.995 37.037 4.02 0.00 34.50 3.69
124 125 9.517868 GCACTAAGACTATAAATAGACCTCCTA 57.482 37.037 4.02 0.00 34.50 2.94
131 132 9.671279 GACTATAAATAGACCTCCTACTACTCC 57.329 40.741 4.02 0.00 34.50 3.85
132 133 9.409253 ACTATAAATAGACCTCCTACTACTCCT 57.591 37.037 4.02 0.00 34.50 3.69
135 136 5.767277 ATAGACCTCCTACTACTCCTAGC 57.233 47.826 0.00 0.00 0.00 3.42
136 137 3.672211 AGACCTCCTACTACTCCTAGCT 58.328 50.000 0.00 0.00 0.00 3.32
137 138 4.830138 AGACCTCCTACTACTCCTAGCTA 58.170 47.826 0.00 0.00 0.00 3.32
138 139 4.842380 AGACCTCCTACTACTCCTAGCTAG 59.158 50.000 14.20 14.20 0.00 3.42
139 140 3.911894 ACCTCCTACTACTCCTAGCTAGG 59.088 52.174 30.94 30.94 45.02 3.02
140 141 3.264964 CCTCCTACTACTCCTAGCTAGGG 59.735 56.522 34.43 26.87 43.79 3.53
141 142 4.169666 CTCCTACTACTCCTAGCTAGGGA 58.830 52.174 34.43 21.28 43.79 4.20
142 143 4.777080 TCCTACTACTCCTAGCTAGGGAT 58.223 47.826 34.43 25.39 43.79 3.85
143 144 5.925087 TCCTACTACTCCTAGCTAGGGATA 58.075 45.833 34.43 25.18 43.79 2.59
144 145 5.965705 TCCTACTACTCCTAGCTAGGGATAG 59.034 48.000 34.43 32.13 43.79 2.08
145 146 4.579647 ACTACTCCTAGCTAGGGATAGC 57.420 50.000 34.43 0.00 43.79 2.97
146 147 3.917629 ACTACTCCTAGCTAGGGATAGCA 59.082 47.826 34.43 17.42 45.11 3.49
147 148 3.905493 ACTCCTAGCTAGGGATAGCAA 57.095 47.619 34.43 15.98 45.11 3.91
148 149 4.200447 ACTCCTAGCTAGGGATAGCAAA 57.800 45.455 34.43 15.30 45.11 3.68
149 150 4.156477 ACTCCTAGCTAGGGATAGCAAAG 58.844 47.826 34.43 24.38 45.11 2.77
150 151 4.156477 CTCCTAGCTAGGGATAGCAAAGT 58.844 47.826 34.43 0.00 45.11 2.66
151 152 5.162969 ACTCCTAGCTAGGGATAGCAAAGTA 60.163 44.000 34.43 13.46 45.11 2.24
152 153 5.326069 TCCTAGCTAGGGATAGCAAAGTAG 58.674 45.833 34.43 8.50 45.11 2.57
153 154 5.081032 CCTAGCTAGGGATAGCAAAGTAGT 58.919 45.833 29.47 0.00 45.11 2.73
154 155 6.045224 TCCTAGCTAGGGATAGCAAAGTAGTA 59.955 42.308 34.43 10.78 45.11 1.82
155 156 6.376018 CCTAGCTAGGGATAGCAAAGTAGTAG 59.624 46.154 29.47 0.00 45.11 2.57
156 157 4.525100 AGCTAGGGATAGCAAAGTAGTAGC 59.475 45.833 9.72 0.00 45.11 3.58
157 158 4.525100 GCTAGGGATAGCAAAGTAGTAGCT 59.475 45.833 2.46 0.00 42.39 3.32
158 159 5.336134 GCTAGGGATAGCAAAGTAGTAGCTC 60.336 48.000 0.00 0.00 42.39 4.09
159 160 4.547671 AGGGATAGCAAAGTAGTAGCTCA 58.452 43.478 0.00 0.00 39.68 4.26
160 161 5.151454 AGGGATAGCAAAGTAGTAGCTCAT 58.849 41.667 0.00 0.00 39.68 2.90
161 162 5.604650 AGGGATAGCAAAGTAGTAGCTCATT 59.395 40.000 0.00 0.00 39.68 2.57
162 163 6.782988 AGGGATAGCAAAGTAGTAGCTCATTA 59.217 38.462 0.00 0.00 39.68 1.90
163 164 7.039363 AGGGATAGCAAAGTAGTAGCTCATTAG 60.039 40.741 0.00 0.00 39.68 1.73
164 165 7.039644 GGGATAGCAAAGTAGTAGCTCATTAGA 60.040 40.741 0.00 0.00 39.68 2.10
165 166 8.026607 GGATAGCAAAGTAGTAGCTCATTAGAG 58.973 40.741 0.00 0.00 44.96 2.43
166 167 8.698973 ATAGCAAAGTAGTAGCTCATTAGAGA 57.301 34.615 0.00 0.00 44.98 3.10
167 168 7.595819 AGCAAAGTAGTAGCTCATTAGAGAT 57.404 36.000 0.00 0.00 44.98 2.75
168 169 8.698973 AGCAAAGTAGTAGCTCATTAGAGATA 57.301 34.615 0.00 0.00 44.98 1.98
169 170 8.792633 AGCAAAGTAGTAGCTCATTAGAGATAG 58.207 37.037 0.00 0.00 42.91 2.08
170 171 8.788806 GCAAAGTAGTAGCTCATTAGAGATAGA 58.211 37.037 0.00 0.00 42.91 1.98
191 192 4.137116 AGCTTTGCTCATACATTACGGA 57.863 40.909 0.00 0.00 30.62 4.69
192 193 4.708177 AGCTTTGCTCATACATTACGGAT 58.292 39.130 0.00 0.00 30.62 4.18
193 194 4.752101 AGCTTTGCTCATACATTACGGATC 59.248 41.667 0.00 0.00 30.62 3.36
194 195 4.752101 GCTTTGCTCATACATTACGGATCT 59.248 41.667 0.00 0.00 0.00 2.75
195 196 5.926542 GCTTTGCTCATACATTACGGATCTA 59.073 40.000 0.00 0.00 0.00 1.98
196 197 6.128795 GCTTTGCTCATACATTACGGATCTAC 60.129 42.308 0.00 0.00 0.00 2.59
197 198 6.650427 TTGCTCATACATTACGGATCTACT 57.350 37.500 0.00 0.00 0.00 2.57
198 199 6.255596 TGCTCATACATTACGGATCTACTC 57.744 41.667 0.00 0.00 0.00 2.59
199 200 5.183331 TGCTCATACATTACGGATCTACTCC 59.817 44.000 0.00 0.00 41.07 3.85
200 201 5.183331 GCTCATACATTACGGATCTACTCCA 59.817 44.000 0.00 0.00 45.24 3.86
201 202 6.127591 GCTCATACATTACGGATCTACTCCAT 60.128 42.308 0.00 0.00 45.24 3.41
202 203 7.158099 TCATACATTACGGATCTACTCCATG 57.842 40.000 0.00 0.00 45.24 3.66
203 204 6.946009 TCATACATTACGGATCTACTCCATGA 59.054 38.462 0.00 0.00 45.24 3.07
204 205 5.713792 ACATTACGGATCTACTCCATGAG 57.286 43.478 0.00 0.00 45.24 2.90
205 206 5.386060 ACATTACGGATCTACTCCATGAGA 58.614 41.667 0.00 0.00 45.24 3.27
207 208 3.866703 ACGGATCTACTCCATGAGAGA 57.133 47.619 15.51 3.86 46.50 3.10
208 209 3.750371 ACGGATCTACTCCATGAGAGAG 58.250 50.000 15.51 6.99 46.50 3.20
209 210 3.392947 ACGGATCTACTCCATGAGAGAGA 59.607 47.826 15.51 13.29 46.50 3.10
210 211 3.751175 CGGATCTACTCCATGAGAGAGAC 59.249 52.174 15.51 9.37 46.50 3.36
211 212 4.079253 GGATCTACTCCATGAGAGAGACC 58.921 52.174 15.51 12.60 46.50 3.85
212 213 3.201353 TCTACTCCATGAGAGAGACCG 57.799 52.381 15.51 0.77 46.50 4.79
213 214 1.606668 CTACTCCATGAGAGAGACCGC 59.393 57.143 15.51 0.00 46.50 5.68
214 215 1.358402 CTCCATGAGAGAGACCGCG 59.642 63.158 0.00 0.00 46.50 6.46
215 216 2.069465 CTCCATGAGAGAGACCGCGG 62.069 65.000 26.86 26.86 46.50 6.46
216 217 2.279120 CATGAGAGAGACCGCGGC 60.279 66.667 28.58 18.62 0.00 6.53
217 218 3.532155 ATGAGAGAGACCGCGGCC 61.532 66.667 28.58 16.50 0.00 6.13
230 231 3.075005 CGGCCCCTCTTCGGAGAA 61.075 66.667 0.00 0.00 45.90 2.87
231 232 2.904131 GGCCCCTCTTCGGAGAAG 59.096 66.667 0.00 3.56 45.90 2.85
232 233 1.686110 GGCCCCTCTTCGGAGAAGA 60.686 63.158 11.41 11.41 45.90 2.87
233 234 1.051556 GGCCCCTCTTCGGAGAAGAT 61.052 60.000 12.21 0.00 45.90 2.40
234 235 0.391228 GCCCCTCTTCGGAGAAGATC 59.609 60.000 12.21 0.00 45.90 2.75
235 236 1.044611 CCCCTCTTCGGAGAAGATCC 58.955 60.000 12.21 0.00 45.90 3.36
236 237 1.044611 CCCTCTTCGGAGAAGATCCC 58.955 60.000 12.21 0.00 46.50 3.85
237 238 1.044611 CCTCTTCGGAGAAGATCCCC 58.955 60.000 12.21 0.00 46.50 4.81
238 239 1.412361 CCTCTTCGGAGAAGATCCCCT 60.412 57.143 12.21 0.00 46.50 4.79
239 240 2.393646 CTCTTCGGAGAAGATCCCCTT 58.606 52.381 12.21 0.00 46.50 3.95
240 241 2.102252 CTCTTCGGAGAAGATCCCCTTG 59.898 54.545 12.21 0.00 46.50 3.61
241 242 1.139853 CTTCGGAGAAGATCCCCTTGG 59.860 57.143 3.88 0.00 46.50 3.61
242 243 0.338467 TCGGAGAAGATCCCCTTGGA 59.662 55.000 0.00 0.00 46.50 3.53
257 258 2.899303 TTGGATTCAAGACCCCCTTC 57.101 50.000 0.00 0.00 31.42 3.46
258 259 2.059756 TGGATTCAAGACCCCCTTCT 57.940 50.000 0.00 0.00 31.42 2.85
259 260 1.635487 TGGATTCAAGACCCCCTTCTG 59.365 52.381 0.00 0.00 31.42 3.02
260 261 1.064389 GGATTCAAGACCCCCTTCTGG 60.064 57.143 0.00 0.00 31.42 3.86
283 284 2.658807 GTCCCTTCAAGACCACCTTT 57.341 50.000 0.00 0.00 31.42 3.11
284 285 2.230660 GTCCCTTCAAGACCACCTTTG 58.769 52.381 0.00 0.00 31.42 2.77
296 297 1.523758 CACCTTTGGAGAAGAACCGG 58.476 55.000 0.00 0.00 0.00 5.28
297 298 1.137697 ACCTTTGGAGAAGAACCGGT 58.862 50.000 0.00 0.00 0.00 5.28
298 299 1.493446 ACCTTTGGAGAAGAACCGGTT 59.507 47.619 22.50 22.50 0.00 4.44
299 300 2.707257 ACCTTTGGAGAAGAACCGGTTA 59.293 45.455 22.33 0.00 0.00 2.85
300 301 3.072211 CCTTTGGAGAAGAACCGGTTAC 58.928 50.000 22.33 14.64 0.00 2.50
301 302 2.845363 TTGGAGAAGAACCGGTTACC 57.155 50.000 22.33 17.80 0.00 2.85
303 304 0.605083 GGAGAAGAACCGGTTACCGT 59.395 55.000 22.33 7.03 46.80 4.83
304 305 1.670967 GGAGAAGAACCGGTTACCGTG 60.671 57.143 22.33 15.77 46.80 4.94
305 306 1.000171 GAGAAGAACCGGTTACCGTGT 60.000 52.381 22.33 16.42 46.80 4.49
306 307 2.228822 GAGAAGAACCGGTTACCGTGTA 59.771 50.000 22.33 0.00 46.80 2.90
307 308 2.827921 AGAAGAACCGGTTACCGTGTAT 59.172 45.455 22.33 4.14 46.80 2.29
308 309 2.947448 AGAACCGGTTACCGTGTATC 57.053 50.000 22.33 16.80 46.80 2.24
309 310 1.133025 AGAACCGGTTACCGTGTATCG 59.867 52.381 22.33 8.43 46.80 2.92
310 311 0.887933 AACCGGTTACCGTGTATCGT 59.112 50.000 20.78 9.11 46.80 3.73
311 312 0.451783 ACCGGTTACCGTGTATCGTC 59.548 55.000 22.78 0.00 46.80 4.20
312 313 0.248621 CCGGTTACCGTGTATCGTCC 60.249 60.000 22.78 0.00 46.80 4.79
313 314 0.248621 CGGTTACCGTGTATCGTCCC 60.249 60.000 16.53 0.00 42.73 4.46
314 315 1.106285 GGTTACCGTGTATCGTCCCT 58.894 55.000 0.00 0.00 37.94 4.20
315 316 1.478105 GGTTACCGTGTATCGTCCCTT 59.522 52.381 0.00 0.00 37.94 3.95
316 317 2.533266 GTTACCGTGTATCGTCCCTTG 58.467 52.381 0.00 0.00 37.94 3.61
317 318 1.838112 TACCGTGTATCGTCCCTTGT 58.162 50.000 0.00 0.00 37.94 3.16
318 319 0.971386 ACCGTGTATCGTCCCTTGTT 59.029 50.000 0.00 0.00 37.94 2.83
319 320 1.337447 ACCGTGTATCGTCCCTTGTTG 60.337 52.381 0.00 0.00 37.94 3.33
320 321 1.067425 CCGTGTATCGTCCCTTGTTGA 60.067 52.381 0.00 0.00 37.94 3.18
321 322 2.418197 CCGTGTATCGTCCCTTGTTGAT 60.418 50.000 0.00 0.00 37.94 2.57
322 323 3.259064 CGTGTATCGTCCCTTGTTGATT 58.741 45.455 0.00 0.00 34.52 2.57
323 324 3.062099 CGTGTATCGTCCCTTGTTGATTG 59.938 47.826 0.00 0.00 34.52 2.67
324 325 4.000988 GTGTATCGTCCCTTGTTGATTGT 58.999 43.478 0.00 0.00 0.00 2.71
325 326 4.000325 TGTATCGTCCCTTGTTGATTGTG 59.000 43.478 0.00 0.00 0.00 3.33
326 327 1.890876 TCGTCCCTTGTTGATTGTGG 58.109 50.000 0.00 0.00 0.00 4.17
327 328 1.418264 TCGTCCCTTGTTGATTGTGGA 59.582 47.619 0.00 0.00 0.00 4.02
328 329 2.039746 TCGTCCCTTGTTGATTGTGGAT 59.960 45.455 0.00 0.00 0.00 3.41
329 330 2.420022 CGTCCCTTGTTGATTGTGGATC 59.580 50.000 0.00 0.00 35.21 3.36
330 331 3.420893 GTCCCTTGTTGATTGTGGATCA 58.579 45.455 0.00 0.00 42.95 2.92
331 332 4.019174 GTCCCTTGTTGATTGTGGATCAT 58.981 43.478 0.00 0.00 44.01 2.45
332 333 4.018490 TCCCTTGTTGATTGTGGATCATG 58.982 43.478 0.00 0.00 44.01 3.07
333 334 3.765511 CCCTTGTTGATTGTGGATCATGT 59.234 43.478 0.00 0.00 44.01 3.21
334 335 4.949238 CCCTTGTTGATTGTGGATCATGTA 59.051 41.667 0.00 0.00 44.01 2.29
335 336 5.595542 CCCTTGTTGATTGTGGATCATGTAT 59.404 40.000 0.00 0.00 44.01 2.29
336 337 6.238842 CCCTTGTTGATTGTGGATCATGTATC 60.239 42.308 0.00 0.00 44.01 2.24
337 338 6.544931 CCTTGTTGATTGTGGATCATGTATCT 59.455 38.462 0.00 0.00 44.01 1.98
338 339 7.255035 CCTTGTTGATTGTGGATCATGTATCTC 60.255 40.741 0.00 0.00 44.01 2.75
339 340 6.057533 TGTTGATTGTGGATCATGTATCTCC 58.942 40.000 0.00 0.00 44.01 3.71
340 341 5.233083 TGATTGTGGATCATGTATCTCCC 57.767 43.478 0.00 0.00 39.83 4.30
341 342 4.909695 TGATTGTGGATCATGTATCTCCCT 59.090 41.667 0.00 0.00 39.83 4.20
342 343 5.370584 TGATTGTGGATCATGTATCTCCCTT 59.629 40.000 0.00 0.00 39.83 3.95
343 344 5.715439 TTGTGGATCATGTATCTCCCTTT 57.285 39.130 0.00 0.00 34.75 3.11
344 345 5.039920 TGTGGATCATGTATCTCCCTTTG 57.960 43.478 0.00 0.00 34.75 2.77
345 346 4.474651 TGTGGATCATGTATCTCCCTTTGT 59.525 41.667 0.00 0.00 34.75 2.83
346 347 4.818546 GTGGATCATGTATCTCCCTTTGTG 59.181 45.833 0.00 0.00 34.75 3.33
347 348 4.474651 TGGATCATGTATCTCCCTTTGTGT 59.525 41.667 0.00 0.00 34.75 3.72
348 349 5.044919 TGGATCATGTATCTCCCTTTGTGTT 60.045 40.000 0.00 0.00 34.75 3.32
349 350 5.529060 GGATCATGTATCTCCCTTTGTGTTC 59.471 44.000 0.00 0.00 34.75 3.18
350 351 5.497464 TCATGTATCTCCCTTTGTGTTCA 57.503 39.130 0.00 0.00 0.00 3.18
351 352 6.065976 TCATGTATCTCCCTTTGTGTTCAT 57.934 37.500 0.00 0.00 0.00 2.57
352 353 5.882000 TCATGTATCTCCCTTTGTGTTCATG 59.118 40.000 0.00 0.00 0.00 3.07
353 354 4.588899 TGTATCTCCCTTTGTGTTCATGG 58.411 43.478 0.00 0.00 0.00 3.66
354 355 4.288366 TGTATCTCCCTTTGTGTTCATGGA 59.712 41.667 0.00 0.00 0.00 3.41
355 356 4.598036 ATCTCCCTTTGTGTTCATGGAT 57.402 40.909 0.00 0.00 0.00 3.41
356 357 3.955471 TCTCCCTTTGTGTTCATGGATC 58.045 45.455 0.00 0.00 0.00 3.36
357 358 3.588842 TCTCCCTTTGTGTTCATGGATCT 59.411 43.478 0.00 0.00 0.00 2.75
358 359 4.782691 TCTCCCTTTGTGTTCATGGATCTA 59.217 41.667 0.00 0.00 0.00 1.98
359 360 5.102953 TCCCTTTGTGTTCATGGATCTAG 57.897 43.478 0.00 0.00 0.00 2.43
360 361 3.629398 CCCTTTGTGTTCATGGATCTAGC 59.371 47.826 0.00 0.00 0.00 3.42
361 362 4.264253 CCTTTGTGTTCATGGATCTAGCA 58.736 43.478 0.00 0.00 0.00 3.49
362 363 4.885907 CCTTTGTGTTCATGGATCTAGCAT 59.114 41.667 0.00 0.00 0.00 3.79
363 364 6.057533 CCTTTGTGTTCATGGATCTAGCATA 58.942 40.000 0.00 0.00 0.00 3.14
364 365 6.713903 CCTTTGTGTTCATGGATCTAGCATAT 59.286 38.462 0.00 0.00 0.00 1.78
365 366 7.308408 CCTTTGTGTTCATGGATCTAGCATATG 60.308 40.741 0.00 0.00 0.00 1.78
366 367 6.178607 TGTGTTCATGGATCTAGCATATGT 57.821 37.500 4.29 0.00 0.00 2.29
367 368 5.993441 TGTGTTCATGGATCTAGCATATGTG 59.007 40.000 4.29 0.00 0.00 3.21
368 369 5.994054 GTGTTCATGGATCTAGCATATGTGT 59.006 40.000 4.29 0.00 0.00 3.72
369 370 5.993441 TGTTCATGGATCTAGCATATGTGTG 59.007 40.000 4.29 0.00 0.00 3.82
370 371 6.183360 TGTTCATGGATCTAGCATATGTGTGA 60.183 38.462 4.29 0.73 0.00 3.58
371 372 6.616237 TCATGGATCTAGCATATGTGTGAT 57.384 37.500 4.29 5.52 0.00 3.06
372 373 6.637657 TCATGGATCTAGCATATGTGTGATC 58.362 40.000 17.61 17.61 32.89 2.92
373 374 5.064441 TGGATCTAGCATATGTGTGATCG 57.936 43.478 18.44 0.00 33.64 3.69
374 375 4.524328 TGGATCTAGCATATGTGTGATCGT 59.476 41.667 18.44 0.00 33.64 3.73
375 376 5.011023 TGGATCTAGCATATGTGTGATCGTT 59.989 40.000 18.44 0.00 33.64 3.85
376 377 5.574830 GGATCTAGCATATGTGTGATCGTTC 59.425 44.000 18.44 8.78 33.64 3.95
377 378 5.774498 TCTAGCATATGTGTGATCGTTCT 57.226 39.130 4.29 0.00 0.00 3.01
378 379 6.149129 TCTAGCATATGTGTGATCGTTCTT 57.851 37.500 4.29 0.00 0.00 2.52
379 380 5.979517 TCTAGCATATGTGTGATCGTTCTTG 59.020 40.000 4.29 0.00 0.00 3.02
380 381 4.507710 AGCATATGTGTGATCGTTCTTGT 58.492 39.130 4.29 0.00 0.00 3.16
381 382 4.937620 AGCATATGTGTGATCGTTCTTGTT 59.062 37.500 4.29 0.00 0.00 2.83
382 383 5.023920 GCATATGTGTGATCGTTCTTGTTG 58.976 41.667 4.29 0.00 0.00 3.33
383 384 5.562917 CATATGTGTGATCGTTCTTGTTGG 58.437 41.667 0.00 0.00 0.00 3.77
384 385 2.912771 TGTGTGATCGTTCTTGTTGGT 58.087 42.857 0.00 0.00 0.00 3.67
385 386 3.275143 TGTGTGATCGTTCTTGTTGGTT 58.725 40.909 0.00 0.00 0.00 3.67
386 387 3.692101 TGTGTGATCGTTCTTGTTGGTTT 59.308 39.130 0.00 0.00 0.00 3.27
387 388 4.035017 GTGTGATCGTTCTTGTTGGTTTG 58.965 43.478 0.00 0.00 0.00 2.93
388 389 3.942115 TGTGATCGTTCTTGTTGGTTTGA 59.058 39.130 0.00 0.00 0.00 2.69
389 390 4.035091 TGTGATCGTTCTTGTTGGTTTGAG 59.965 41.667 0.00 0.00 0.00 3.02
390 391 4.035208 GTGATCGTTCTTGTTGGTTTGAGT 59.965 41.667 0.00 0.00 0.00 3.41
391 392 4.035091 TGATCGTTCTTGTTGGTTTGAGTG 59.965 41.667 0.00 0.00 0.00 3.51
392 393 3.601435 TCGTTCTTGTTGGTTTGAGTGA 58.399 40.909 0.00 0.00 0.00 3.41
393 394 4.196193 TCGTTCTTGTTGGTTTGAGTGAT 58.804 39.130 0.00 0.00 0.00 3.06
394 395 4.638421 TCGTTCTTGTTGGTTTGAGTGATT 59.362 37.500 0.00 0.00 0.00 2.57
395 396 4.970003 CGTTCTTGTTGGTTTGAGTGATTC 59.030 41.667 0.00 0.00 0.00 2.52
396 397 5.220854 CGTTCTTGTTGGTTTGAGTGATTCT 60.221 40.000 0.00 0.00 0.00 2.40
397 398 6.202226 GTTCTTGTTGGTTTGAGTGATTCTC 58.798 40.000 0.00 0.00 43.03 2.87
398 399 5.684704 TCTTGTTGGTTTGAGTGATTCTCT 58.315 37.500 0.00 0.00 43.13 3.10
399 400 5.760253 TCTTGTTGGTTTGAGTGATTCTCTC 59.240 40.000 8.48 8.48 43.13 3.20
400 401 5.034852 TGTTGGTTTGAGTGATTCTCTCA 57.965 39.130 13.09 13.09 43.13 3.27
401 402 5.624159 TGTTGGTTTGAGTGATTCTCTCAT 58.376 37.500 16.75 0.00 43.13 2.90
402 403 5.471116 TGTTGGTTTGAGTGATTCTCTCATG 59.529 40.000 16.75 0.00 43.13 3.07
403 404 5.233083 TGGTTTGAGTGATTCTCTCATGT 57.767 39.130 16.75 0.00 43.13 3.21
404 405 5.624159 TGGTTTGAGTGATTCTCTCATGTT 58.376 37.500 16.75 0.00 43.13 2.71
405 406 6.064060 TGGTTTGAGTGATTCTCTCATGTTT 58.936 36.000 16.75 0.00 43.13 2.83
406 407 6.205464 TGGTTTGAGTGATTCTCTCATGTTTC 59.795 38.462 16.75 8.02 43.13 2.78
407 408 6.348868 GGTTTGAGTGATTCTCTCATGTTTCC 60.349 42.308 16.75 11.66 43.13 3.13
408 409 4.836825 TGAGTGATTCTCTCATGTTTCCC 58.163 43.478 13.09 0.00 43.13 3.97
409 410 4.195416 GAGTGATTCTCTCATGTTTCCCC 58.805 47.826 10.18 0.00 39.86 4.81
410 411 3.848975 AGTGATTCTCTCATGTTTCCCCT 59.151 43.478 0.00 0.00 35.97 4.79
411 412 4.080638 AGTGATTCTCTCATGTTTCCCCTC 60.081 45.833 0.00 0.00 35.97 4.30
412 413 3.118629 TGATTCTCTCATGTTTCCCCTCG 60.119 47.826 0.00 0.00 0.00 4.63
413 414 1.938585 TCTCTCATGTTTCCCCTCGT 58.061 50.000 0.00 0.00 0.00 4.18
414 415 1.550524 TCTCTCATGTTTCCCCTCGTG 59.449 52.381 0.00 0.00 0.00 4.35
415 416 1.276421 CTCTCATGTTTCCCCTCGTGT 59.724 52.381 0.00 0.00 0.00 4.49
416 417 1.697432 TCTCATGTTTCCCCTCGTGTT 59.303 47.619 0.00 0.00 0.00 3.32
417 418 2.076863 CTCATGTTTCCCCTCGTGTTC 58.923 52.381 0.00 0.00 0.00 3.18
418 419 1.697432 TCATGTTTCCCCTCGTGTTCT 59.303 47.619 0.00 0.00 0.00 3.01
419 420 2.105821 TCATGTTTCCCCTCGTGTTCTT 59.894 45.455 0.00 0.00 0.00 2.52
420 421 2.249844 TGTTTCCCCTCGTGTTCTTC 57.750 50.000 0.00 0.00 0.00 2.87
421 422 1.145803 GTTTCCCCTCGTGTTCTTCG 58.854 55.000 0.00 0.00 0.00 3.79
422 423 0.754472 TTTCCCCTCGTGTTCTTCGT 59.246 50.000 0.00 0.00 0.00 3.85
423 424 0.754472 TTCCCCTCGTGTTCTTCGTT 59.246 50.000 0.00 0.00 0.00 3.85
424 425 0.754472 TCCCCTCGTGTTCTTCGTTT 59.246 50.000 0.00 0.00 0.00 3.60
425 426 1.139455 TCCCCTCGTGTTCTTCGTTTT 59.861 47.619 0.00 0.00 0.00 2.43
426 427 1.529865 CCCCTCGTGTTCTTCGTTTTC 59.470 52.381 0.00 0.00 0.00 2.29
427 428 2.480845 CCCTCGTGTTCTTCGTTTTCT 58.519 47.619 0.00 0.00 0.00 2.52
428 429 2.870411 CCCTCGTGTTCTTCGTTTTCTT 59.130 45.455 0.00 0.00 0.00 2.52
429 430 3.311596 CCCTCGTGTTCTTCGTTTTCTTT 59.688 43.478 0.00 0.00 0.00 2.52
430 431 4.271687 CCTCGTGTTCTTCGTTTTCTTTG 58.728 43.478 0.00 0.00 0.00 2.77
431 432 4.201783 CCTCGTGTTCTTCGTTTTCTTTGT 60.202 41.667 0.00 0.00 0.00 2.83
432 433 4.643953 TCGTGTTCTTCGTTTTCTTTGTG 58.356 39.130 0.00 0.00 0.00 3.33
433 434 3.783943 CGTGTTCTTCGTTTTCTTTGTGG 59.216 43.478 0.00 0.00 0.00 4.17
434 435 4.102649 GTGTTCTTCGTTTTCTTTGTGGG 58.897 43.478 0.00 0.00 0.00 4.61
435 436 4.011023 TGTTCTTCGTTTTCTTTGTGGGA 58.989 39.130 0.00 0.00 0.00 4.37
436 437 4.642885 TGTTCTTCGTTTTCTTTGTGGGAT 59.357 37.500 0.00 0.00 0.00 3.85
437 438 5.212934 GTTCTTCGTTTTCTTTGTGGGATC 58.787 41.667 0.00 0.00 0.00 3.36
438 439 3.818773 TCTTCGTTTTCTTTGTGGGATCC 59.181 43.478 1.92 1.92 0.00 3.36
439 440 2.147958 TCGTTTTCTTTGTGGGATCCG 58.852 47.619 5.45 0.00 0.00 4.18
440 441 1.401018 CGTTTTCTTTGTGGGATCCGC 60.401 52.381 5.45 1.54 34.12 5.54
441 442 1.886542 GTTTTCTTTGTGGGATCCGCT 59.113 47.619 5.45 0.00 34.70 5.52
442 443 1.821216 TTTCTTTGTGGGATCCGCTC 58.179 50.000 5.45 0.69 34.70 5.03
443 444 0.035439 TTCTTTGTGGGATCCGCTCC 60.035 55.000 5.45 0.00 44.11 4.70
444 445 0.909610 TCTTTGTGGGATCCGCTCCT 60.910 55.000 5.45 0.00 44.28 3.69
445 446 0.035056 CTTTGTGGGATCCGCTCCTT 60.035 55.000 5.45 0.00 44.28 3.36
446 447 0.404040 TTTGTGGGATCCGCTCCTTT 59.596 50.000 5.45 0.00 44.28 3.11
447 448 0.035439 TTGTGGGATCCGCTCCTTTC 60.035 55.000 5.45 0.00 44.28 2.62
448 449 1.521681 GTGGGATCCGCTCCTTTCG 60.522 63.158 5.45 0.00 44.28 3.46
449 450 1.987855 TGGGATCCGCTCCTTTCGT 60.988 57.895 5.45 0.00 44.28 3.85
450 451 1.521681 GGGATCCGCTCCTTTCGTG 60.522 63.158 5.45 0.00 44.28 4.35
451 452 1.515954 GGATCCGCTCCTTTCGTGA 59.484 57.895 0.00 0.00 41.29 4.35
452 453 0.108329 GGATCCGCTCCTTTCGTGAA 60.108 55.000 0.00 0.00 41.29 3.18
453 454 1.674817 GGATCCGCTCCTTTCGTGAAA 60.675 52.381 0.00 0.00 41.29 2.69
454 455 2.280628 GATCCGCTCCTTTCGTGAAAT 58.719 47.619 0.00 0.00 0.00 2.17
455 456 3.454375 GATCCGCTCCTTTCGTGAAATA 58.546 45.455 0.00 0.00 0.00 1.40
456 457 3.536956 TCCGCTCCTTTCGTGAAATAT 57.463 42.857 0.00 0.00 0.00 1.28
457 458 3.454375 TCCGCTCCTTTCGTGAAATATC 58.546 45.455 0.00 0.00 0.00 1.63
458 459 2.218759 CCGCTCCTTTCGTGAAATATCG 59.781 50.000 0.00 0.00 0.00 2.92
459 460 2.218759 CGCTCCTTTCGTGAAATATCGG 59.781 50.000 0.00 0.00 0.00 4.18
460 461 2.032808 GCTCCTTTCGTGAAATATCGGC 60.033 50.000 0.00 0.00 0.00 5.54
461 462 2.544267 CTCCTTTCGTGAAATATCGGCC 59.456 50.000 0.00 0.00 0.00 6.13
462 463 2.093394 TCCTTTCGTGAAATATCGGCCA 60.093 45.455 2.24 0.00 0.00 5.36
463 464 2.878406 CCTTTCGTGAAATATCGGCCAT 59.122 45.455 2.24 0.00 0.00 4.40
464 465 3.058914 CCTTTCGTGAAATATCGGCCATC 60.059 47.826 2.24 0.00 0.00 3.51
465 466 3.469008 TTCGTGAAATATCGGCCATCT 57.531 42.857 2.24 0.00 0.00 2.90
466 467 4.594123 TTCGTGAAATATCGGCCATCTA 57.406 40.909 2.24 0.00 0.00 1.98
467 468 4.174411 TCGTGAAATATCGGCCATCTAG 57.826 45.455 2.24 0.00 0.00 2.43
468 469 3.056821 TCGTGAAATATCGGCCATCTAGG 60.057 47.826 2.24 0.00 41.84 3.02
469 470 3.600388 GTGAAATATCGGCCATCTAGGG 58.400 50.000 2.24 0.00 38.09 3.53
470 471 3.008049 GTGAAATATCGGCCATCTAGGGT 59.992 47.826 2.24 0.00 38.09 4.34
471 472 3.650942 TGAAATATCGGCCATCTAGGGTT 59.349 43.478 2.24 0.00 38.09 4.11
472 473 3.983044 AATATCGGCCATCTAGGGTTC 57.017 47.619 2.24 0.00 38.09 3.62
473 474 1.640917 TATCGGCCATCTAGGGTTCC 58.359 55.000 2.24 0.00 38.09 3.62
474 475 0.399949 ATCGGCCATCTAGGGTTCCA 60.400 55.000 2.24 0.00 38.09 3.53
475 476 1.146263 CGGCCATCTAGGGTTCCAC 59.854 63.158 2.24 0.00 38.09 4.02
476 477 1.532238 GGCCATCTAGGGTTCCACC 59.468 63.158 0.00 0.00 38.09 4.61
550 551 6.015940 CCCACCATTGATTAGAAGATTTAGCC 60.016 42.308 0.00 0.00 0.00 3.93
578 579 4.578516 TGAATGGCTATTGGTTTGATACGG 59.421 41.667 0.00 0.00 0.00 4.02
595 596 7.780008 TGATACGGATAATGACAATCGTTTT 57.220 32.000 0.00 0.00 0.00 2.43
720 721 3.129113 TGGATGCATATGCTGTGTTTCAC 59.871 43.478 27.13 8.71 42.66 3.18
867 870 7.565680 AGAAAGAATGTACCCGTCTATTCAAT 58.434 34.615 0.00 0.00 33.19 2.57
901 904 9.645059 TGCATCGATAAAATAAAACCAAATTCA 57.355 25.926 0.00 0.00 0.00 2.57
1025 1029 9.415544 CATGAAAAAGAAAGGAGGTAGATTTTG 57.584 33.333 0.00 0.00 0.00 2.44
1190 1199 6.204108 ACGAAGACTTTTGGTAAAACATCGAT 59.796 34.615 0.00 0.00 31.69 3.59
1207 1216 7.151999 ACATCGATGTTTGTTGGCTTATTTA 57.848 32.000 25.18 0.00 37.90 1.40
1277 1286 9.349713 TGAATATTCGGGAGCAGTAATTTAATT 57.650 29.630 10.80 0.00 0.00 1.40
1466 1478 6.691508 TCATGATAGTCAATATGGAACCTCG 58.308 40.000 0.00 0.00 0.00 4.63
1478 1490 1.439679 GAACCTCGACACCCATCAAC 58.560 55.000 0.00 0.00 0.00 3.18
1501 1513 3.588955 CATGGTGTTCTTCGACTGATCA 58.411 45.455 0.00 0.00 0.00 2.92
1537 1549 6.375174 TGGTGAGGATGTTATTGATTGTGAAG 59.625 38.462 0.00 0.00 0.00 3.02
1695 1707 9.745880 CCAGAATTCTTGGAGAATATTCAAATG 57.254 33.333 17.56 5.24 43.67 2.32
1697 1709 9.198475 AGAATTCTTGGAGAATATTCAAATGCT 57.802 29.630 17.56 7.88 43.67 3.79
1910 1924 2.196229 ATCGGAGGAGTAGCCGCT 59.804 61.111 0.00 0.00 46.79 5.52
1929 1943 3.368843 CGCTGATCTACCTTATGGATGGG 60.369 52.174 0.81 0.00 37.04 4.00
1930 1944 3.620966 GCTGATCTACCTTATGGATGGGC 60.621 52.174 0.81 0.00 37.04 5.36
1949 1963 8.646900 GGATGGGCCAATAAATGTTTAGATTTA 58.353 33.333 11.89 0.00 36.34 1.40
2050 2066 5.752472 GGAGTAGGTTTTATTAGCGGAGAAC 59.248 44.000 0.00 0.00 0.00 3.01
2100 2116 3.243877 CGATGTTACGAGCTTCTGGAATG 59.756 47.826 0.00 0.00 35.09 2.67
2101 2117 3.678056 TGTTACGAGCTTCTGGAATGT 57.322 42.857 0.00 0.00 0.00 2.71
2117 2133 6.270000 TCTGGAATGTAATGGGATCTTCGTAT 59.730 38.462 0.00 0.00 0.00 3.06
2172 2188 3.749665 TGGAAAGTCCAATGGCAAAAG 57.250 42.857 0.00 0.00 45.00 2.27
2191 2207 2.197465 AGGAAGGGGATTCGTTAGCTT 58.803 47.619 0.00 0.00 38.95 3.74
2225 2242 3.127548 CGAGTTGGTGAAATGAGGGAATG 59.872 47.826 0.00 0.00 0.00 2.67
2246 2263 8.938906 GGAATGCATCAAAATAATTCAACAAGT 58.061 29.630 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.181021 GGTACCAGACGTCCGCTG 59.819 66.667 13.01 3.93 0.00 5.18
23 24 2.035312 AGGTACCAGACGTCCGCT 59.965 61.111 15.94 0.00 0.00 5.52
24 25 2.181021 CAGGTACCAGACGTCCGC 59.819 66.667 15.94 0.00 0.00 5.54
25 26 0.959372 AGACAGGTACCAGACGTCCG 60.959 60.000 15.94 0.70 0.00 4.79
26 27 0.526662 CAGACAGGTACCAGACGTCC 59.473 60.000 15.94 0.00 0.00 4.79
27 28 0.109226 GCAGACAGGTACCAGACGTC 60.109 60.000 15.94 7.70 0.00 4.34
28 29 1.863662 CGCAGACAGGTACCAGACGT 61.864 60.000 15.94 5.29 0.00 4.34
29 30 1.154016 CGCAGACAGGTACCAGACG 60.154 63.158 15.94 7.00 0.00 4.18
30 31 1.446272 GCGCAGACAGGTACCAGAC 60.446 63.158 15.94 6.67 0.00 3.51
31 32 1.906333 TGCGCAGACAGGTACCAGA 60.906 57.895 15.94 0.00 0.00 3.86
32 33 1.738099 GTGCGCAGACAGGTACCAG 60.738 63.158 12.22 9.05 0.00 4.00
33 34 2.342279 GTGCGCAGACAGGTACCA 59.658 61.111 12.22 0.00 0.00 3.25
34 35 1.738099 CTGTGCGCAGACAGGTACC 60.738 63.158 22.94 2.73 45.28 3.34
35 36 3.862124 CTGTGCGCAGACAGGTAC 58.138 61.111 22.94 0.00 45.28 3.34
39 40 1.735920 GAGTCCTGTGCGCAGACAG 60.736 63.158 28.54 21.72 45.28 3.51
40 41 2.340078 GAGTCCTGTGCGCAGACA 59.660 61.111 28.54 14.47 45.28 3.41
41 42 1.735920 CTGAGTCCTGTGCGCAGAC 60.736 63.158 28.54 21.73 45.28 3.51
42 43 2.653115 CTGAGTCCTGTGCGCAGA 59.347 61.111 28.54 9.44 45.28 4.26
43 44 2.433838 CCTGAGTCCTGTGCGCAG 60.434 66.667 20.56 20.56 42.22 5.18
44 45 4.687215 GCCTGAGTCCTGTGCGCA 62.687 66.667 5.66 5.66 0.00 6.09
46 47 4.767255 GGGCCTGAGTCCTGTGCG 62.767 72.222 0.84 0.00 33.65 5.34
47 48 4.767255 CGGGCCTGAGTCCTGTGC 62.767 72.222 5.28 0.00 34.62 4.57
48 49 2.997315 TCGGGCCTGAGTCCTGTG 60.997 66.667 11.27 0.00 34.62 3.66
49 50 2.681778 CTCGGGCCTGAGTCCTGT 60.682 66.667 30.58 0.00 34.62 4.00
50 51 3.465403 CCTCGGGCCTGAGTCCTG 61.465 72.222 34.54 18.99 34.62 3.86
61 62 2.750350 GGATACATGGGCCTCGGG 59.250 66.667 4.53 0.00 0.00 5.14
62 63 2.750350 GGGATACATGGGCCTCGG 59.250 66.667 4.53 0.00 39.74 4.63
63 64 1.831652 GAGGGGATACATGGGCCTCG 61.832 65.000 4.53 0.00 31.65 4.63
64 65 0.768221 TGAGGGGATACATGGGCCTC 60.768 60.000 4.53 0.00 39.64 4.70
65 66 1.062488 GTGAGGGGATACATGGGCCT 61.062 60.000 4.53 0.00 39.74 5.19
66 67 1.062488 AGTGAGGGGATACATGGGCC 61.062 60.000 0.00 0.00 39.74 5.80
67 68 0.846693 AAGTGAGGGGATACATGGGC 59.153 55.000 0.00 0.00 39.74 5.36
68 69 1.070758 CGAAGTGAGGGGATACATGGG 59.929 57.143 0.00 0.00 39.74 4.00
69 70 1.762957 ACGAAGTGAGGGGATACATGG 59.237 52.381 0.00 0.00 42.51 3.66
84 85 2.107950 TAGTGCAAATGGGGACGAAG 57.892 50.000 0.00 0.00 33.93 3.79
85 86 2.039216 TCTTAGTGCAAATGGGGACGAA 59.961 45.455 0.00 0.00 33.93 3.85
86 87 1.626321 TCTTAGTGCAAATGGGGACGA 59.374 47.619 0.00 0.00 33.93 4.20
87 88 1.737793 GTCTTAGTGCAAATGGGGACG 59.262 52.381 0.00 0.00 33.93 4.79
88 89 3.073274 AGTCTTAGTGCAAATGGGGAC 57.927 47.619 0.00 0.00 0.00 4.46
89 90 6.569127 TTATAGTCTTAGTGCAAATGGGGA 57.431 37.500 0.00 0.00 0.00 4.81
90 91 7.823745 ATTTATAGTCTTAGTGCAAATGGGG 57.176 36.000 0.00 0.00 0.00 4.96
91 92 9.778741 TCTATTTATAGTCTTAGTGCAAATGGG 57.221 33.333 0.00 0.00 0.00 4.00
96 97 8.639761 GGAGGTCTATTTATAGTCTTAGTGCAA 58.360 37.037 0.00 0.00 0.00 4.08
97 98 8.005388 AGGAGGTCTATTTATAGTCTTAGTGCA 58.995 37.037 0.00 0.00 0.00 4.57
98 99 8.411991 AGGAGGTCTATTTATAGTCTTAGTGC 57.588 38.462 0.00 0.00 0.00 4.40
105 106 9.671279 GGAGTAGTAGGAGGTCTATTTATAGTC 57.329 40.741 0.00 0.00 0.00 2.59
106 107 9.409253 AGGAGTAGTAGGAGGTCTATTTATAGT 57.591 37.037 0.00 0.00 0.00 2.12
109 110 8.330993 GCTAGGAGTAGTAGGAGGTCTATTTAT 58.669 40.741 0.00 0.00 0.00 1.40
110 111 7.516906 AGCTAGGAGTAGTAGGAGGTCTATTTA 59.483 40.741 0.00 0.00 0.00 1.40
111 112 6.333435 AGCTAGGAGTAGTAGGAGGTCTATTT 59.667 42.308 0.00 0.00 0.00 1.40
112 113 5.853364 AGCTAGGAGTAGTAGGAGGTCTATT 59.147 44.000 0.00 0.00 0.00 1.73
113 114 5.417755 AGCTAGGAGTAGTAGGAGGTCTAT 58.582 45.833 0.00 0.00 0.00 1.98
114 115 4.830138 AGCTAGGAGTAGTAGGAGGTCTA 58.170 47.826 0.00 0.00 0.00 2.59
115 116 3.672211 AGCTAGGAGTAGTAGGAGGTCT 58.328 50.000 0.00 0.00 0.00 3.85
116 117 4.019950 CCTAGCTAGGAGTAGTAGGAGGTC 60.020 54.167 32.79 0.00 46.63 3.85
117 118 3.911894 CCTAGCTAGGAGTAGTAGGAGGT 59.088 52.174 32.79 0.00 46.63 3.85
118 119 3.264964 CCCTAGCTAGGAGTAGTAGGAGG 59.735 56.522 36.80 14.48 46.63 4.30
119 120 4.169666 TCCCTAGCTAGGAGTAGTAGGAG 58.830 52.174 36.80 18.03 46.63 3.69
120 121 4.225281 TCCCTAGCTAGGAGTAGTAGGA 57.775 50.000 36.80 21.20 46.63 2.94
121 122 5.397109 GCTATCCCTAGCTAGGAGTAGTAGG 60.397 52.000 36.80 19.38 46.63 3.18
122 123 5.677567 GCTATCCCTAGCTAGGAGTAGTAG 58.322 50.000 36.80 26.81 46.63 2.57
123 124 5.697082 GCTATCCCTAGCTAGGAGTAGTA 57.303 47.826 36.80 20.25 46.63 1.82
124 125 4.579647 GCTATCCCTAGCTAGGAGTAGT 57.420 50.000 36.80 20.22 46.63 2.73
135 136 5.770663 TGAGCTACTACTTTGCTATCCCTAG 59.229 44.000 0.00 0.00 37.16 3.02
136 137 5.702266 TGAGCTACTACTTTGCTATCCCTA 58.298 41.667 0.00 0.00 37.16 3.53
137 138 4.547671 TGAGCTACTACTTTGCTATCCCT 58.452 43.478 0.00 0.00 37.16 4.20
138 139 4.939052 TGAGCTACTACTTTGCTATCCC 57.061 45.455 0.00 0.00 37.16 3.85
139 140 7.887381 TCTAATGAGCTACTACTTTGCTATCC 58.113 38.462 0.00 0.00 37.16 2.59
140 141 8.788806 TCTCTAATGAGCTACTACTTTGCTATC 58.211 37.037 0.00 0.00 40.03 2.08
141 142 8.698973 TCTCTAATGAGCTACTACTTTGCTAT 57.301 34.615 0.00 0.00 40.03 2.97
142 143 8.698973 ATCTCTAATGAGCTACTACTTTGCTA 57.301 34.615 0.00 0.00 40.03 3.49
143 144 7.595819 ATCTCTAATGAGCTACTACTTTGCT 57.404 36.000 0.00 0.00 40.03 3.91
144 145 8.788806 TCTATCTCTAATGAGCTACTACTTTGC 58.211 37.037 0.00 0.00 40.03 3.68
146 147 9.010029 GCTCTATCTCTAATGAGCTACTACTTT 57.990 37.037 6.58 0.00 45.78 2.66
147 148 8.561738 GCTCTATCTCTAATGAGCTACTACTT 57.438 38.462 6.58 0.00 45.78 2.24
170 171 4.137116 TCCGTAATGTATGAGCAAAGCT 57.863 40.909 0.00 0.00 43.88 3.74
171 172 4.752101 AGATCCGTAATGTATGAGCAAAGC 59.248 41.667 0.00 0.00 0.00 3.51
172 173 7.148641 AGTAGATCCGTAATGTATGAGCAAAG 58.851 38.462 0.00 0.00 0.00 2.77
173 174 7.050970 AGTAGATCCGTAATGTATGAGCAAA 57.949 36.000 0.00 0.00 0.00 3.68
174 175 6.294564 GGAGTAGATCCGTAATGTATGAGCAA 60.295 42.308 0.00 0.00 38.67 3.91
175 176 5.183331 GGAGTAGATCCGTAATGTATGAGCA 59.817 44.000 0.00 0.00 38.67 4.26
176 177 5.642686 GGAGTAGATCCGTAATGTATGAGC 58.357 45.833 0.00 0.00 38.67 4.26
190 191 3.751175 CGGTCTCTCTCATGGAGTAGATC 59.249 52.174 9.98 10.25 42.40 2.75
191 192 3.750371 CGGTCTCTCTCATGGAGTAGAT 58.250 50.000 9.98 0.00 42.40 1.98
192 193 2.746803 GCGGTCTCTCTCATGGAGTAGA 60.747 54.545 9.98 8.93 42.40 2.59
193 194 1.606668 GCGGTCTCTCTCATGGAGTAG 59.393 57.143 9.98 7.33 42.40 2.57
194 195 1.681538 GCGGTCTCTCTCATGGAGTA 58.318 55.000 9.98 0.30 42.40 2.59
195 196 1.380403 CGCGGTCTCTCTCATGGAGT 61.380 60.000 0.00 0.00 42.40 3.85
196 197 1.358402 CGCGGTCTCTCTCATGGAG 59.642 63.158 0.00 5.18 43.12 3.86
197 198 2.121538 CCGCGGTCTCTCTCATGGA 61.122 63.158 19.50 0.00 0.00 3.41
198 199 2.415010 CCGCGGTCTCTCTCATGG 59.585 66.667 19.50 0.00 0.00 3.66
199 200 2.279120 GCCGCGGTCTCTCTCATG 60.279 66.667 28.70 0.00 0.00 3.07
200 201 3.532155 GGCCGCGGTCTCTCTCAT 61.532 66.667 28.70 0.00 0.00 2.90
213 214 3.075005 TTCTCCGAAGAGGGGCCG 61.075 66.667 0.00 0.00 41.53 6.13
214 215 1.051556 ATCTTCTCCGAAGAGGGGCC 61.052 60.000 11.43 0.00 41.53 5.80
215 216 0.391228 GATCTTCTCCGAAGAGGGGC 59.609 60.000 11.43 0.00 41.53 5.80
216 217 1.044611 GGATCTTCTCCGAAGAGGGG 58.955 60.000 11.43 0.00 43.85 4.79
217 218 1.044611 GGGATCTTCTCCGAAGAGGG 58.955 60.000 11.43 0.00 46.01 4.30
218 219 1.044611 GGGGATCTTCTCCGAAGAGG 58.955 60.000 11.43 0.00 46.01 3.69
219 220 2.080654 AGGGGATCTTCTCCGAAGAG 57.919 55.000 11.43 0.00 43.53 2.85
220 221 2.111384 CAAGGGGATCTTCTCCGAAGA 58.889 52.381 8.57 8.57 43.53 2.87
221 222 1.139853 CCAAGGGGATCTTCTCCGAAG 59.860 57.143 0.00 0.00 43.53 3.79
222 223 1.204146 CCAAGGGGATCTTCTCCGAA 58.796 55.000 0.00 0.00 43.53 4.30
223 224 0.338467 TCCAAGGGGATCTTCTCCGA 59.662 55.000 0.00 0.00 43.53 4.55
224 225 2.916355 TCCAAGGGGATCTTCTCCG 58.084 57.895 0.00 0.00 43.53 4.63
238 239 2.041620 CAGAAGGGGGTCTTGAATCCAA 59.958 50.000 0.00 0.00 35.50 3.53
239 240 1.635487 CAGAAGGGGGTCTTGAATCCA 59.365 52.381 0.00 0.00 35.50 3.41
240 241 1.064389 CCAGAAGGGGGTCTTGAATCC 60.064 57.143 0.00 0.00 35.50 3.01
241 242 2.426842 CCAGAAGGGGGTCTTGAATC 57.573 55.000 0.00 0.00 35.50 2.52
264 265 2.230660 CAAAGGTGGTCTTGAAGGGAC 58.769 52.381 0.00 0.00 35.55 4.46
265 266 1.144913 CCAAAGGTGGTCTTGAAGGGA 59.855 52.381 0.00 0.00 40.42 4.20
266 267 1.144913 TCCAAAGGTGGTCTTGAAGGG 59.855 52.381 0.00 0.00 46.11 3.95
267 268 2.106511 TCTCCAAAGGTGGTCTTGAAGG 59.893 50.000 0.00 0.00 46.11 3.46
268 269 3.492102 TCTCCAAAGGTGGTCTTGAAG 57.508 47.619 0.00 0.00 46.11 3.02
269 270 3.458118 TCTTCTCCAAAGGTGGTCTTGAA 59.542 43.478 0.00 0.00 46.11 2.69
270 271 3.045634 TCTTCTCCAAAGGTGGTCTTGA 58.954 45.455 0.00 0.00 46.11 3.02
271 272 3.492102 TCTTCTCCAAAGGTGGTCTTG 57.508 47.619 0.00 0.00 46.11 3.02
272 273 3.435169 GGTTCTTCTCCAAAGGTGGTCTT 60.435 47.826 0.00 0.00 46.11 3.01
273 274 2.106684 GGTTCTTCTCCAAAGGTGGTCT 59.893 50.000 0.00 0.00 46.11 3.85
274 275 2.505405 GGTTCTTCTCCAAAGGTGGTC 58.495 52.381 0.00 0.00 46.11 4.02
275 276 1.202770 CGGTTCTTCTCCAAAGGTGGT 60.203 52.381 0.00 0.00 46.11 4.16
277 278 1.202770 ACCGGTTCTTCTCCAAAGGTG 60.203 52.381 0.00 0.00 0.00 4.00
278 279 1.137697 ACCGGTTCTTCTCCAAAGGT 58.862 50.000 0.00 0.00 0.00 3.50
279 280 2.271944 AACCGGTTCTTCTCCAAAGG 57.728 50.000 15.86 0.00 0.00 3.11
280 281 3.072211 GGTAACCGGTTCTTCTCCAAAG 58.928 50.000 26.16 0.00 0.00 2.77
281 282 2.548493 CGGTAACCGGTTCTTCTCCAAA 60.548 50.000 26.16 0.00 44.15 3.28
282 283 1.001181 CGGTAACCGGTTCTTCTCCAA 59.999 52.381 26.16 0.00 44.15 3.53
283 284 0.604578 CGGTAACCGGTTCTTCTCCA 59.395 55.000 26.16 0.18 44.15 3.86
284 285 3.430779 CGGTAACCGGTTCTTCTCC 57.569 57.895 26.16 17.26 44.15 3.71
302 303 4.000988 ACAATCAACAAGGGACGATACAC 58.999 43.478 0.00 0.00 0.00 2.90
303 304 4.000325 CACAATCAACAAGGGACGATACA 59.000 43.478 0.00 0.00 0.00 2.29
304 305 3.374058 CCACAATCAACAAGGGACGATAC 59.626 47.826 0.00 0.00 0.00 2.24
305 306 3.262151 TCCACAATCAACAAGGGACGATA 59.738 43.478 0.00 0.00 0.00 2.92
306 307 2.039746 TCCACAATCAACAAGGGACGAT 59.960 45.455 0.00 0.00 0.00 3.73
307 308 1.418264 TCCACAATCAACAAGGGACGA 59.582 47.619 0.00 0.00 0.00 4.20
308 309 1.890876 TCCACAATCAACAAGGGACG 58.109 50.000 0.00 0.00 0.00 4.79
309 310 3.420893 TGATCCACAATCAACAAGGGAC 58.579 45.455 0.00 0.00 41.49 4.46
310 311 3.805066 TGATCCACAATCAACAAGGGA 57.195 42.857 0.00 0.00 41.49 4.20
319 320 5.495926 AGGGAGATACATGATCCACAATC 57.504 43.478 0.00 0.00 34.80 2.67
320 321 5.919348 AAGGGAGATACATGATCCACAAT 57.081 39.130 0.00 0.00 34.80 2.71
321 322 5.044919 ACAAAGGGAGATACATGATCCACAA 60.045 40.000 0.00 0.00 34.80 3.33
322 323 4.474651 ACAAAGGGAGATACATGATCCACA 59.525 41.667 0.00 0.00 34.80 4.17
323 324 4.818546 CACAAAGGGAGATACATGATCCAC 59.181 45.833 0.00 0.00 34.80 4.02
324 325 4.474651 ACACAAAGGGAGATACATGATCCA 59.525 41.667 0.00 0.00 34.80 3.41
325 326 5.041191 ACACAAAGGGAGATACATGATCC 57.959 43.478 0.00 0.94 34.80 3.36
326 327 6.115446 TGAACACAAAGGGAGATACATGATC 58.885 40.000 0.00 0.00 34.40 2.92
327 328 6.065976 TGAACACAAAGGGAGATACATGAT 57.934 37.500 0.00 0.00 0.00 2.45
328 329 5.497464 TGAACACAAAGGGAGATACATGA 57.503 39.130 0.00 0.00 0.00 3.07
329 330 5.066893 CCATGAACACAAAGGGAGATACATG 59.933 44.000 0.00 0.00 33.61 3.21
330 331 5.044919 TCCATGAACACAAAGGGAGATACAT 60.045 40.000 0.00 0.00 0.00 2.29
331 332 4.288366 TCCATGAACACAAAGGGAGATACA 59.712 41.667 0.00 0.00 0.00 2.29
332 333 4.843728 TCCATGAACACAAAGGGAGATAC 58.156 43.478 0.00 0.00 0.00 2.24
333 334 5.429762 AGATCCATGAACACAAAGGGAGATA 59.570 40.000 0.00 0.00 0.00 1.98
334 335 4.229123 AGATCCATGAACACAAAGGGAGAT 59.771 41.667 0.00 0.00 0.00 2.75
335 336 3.588842 AGATCCATGAACACAAAGGGAGA 59.411 43.478 0.00 0.00 0.00 3.71
336 337 3.960571 AGATCCATGAACACAAAGGGAG 58.039 45.455 0.00 0.00 0.00 4.30
337 338 4.626287 GCTAGATCCATGAACACAAAGGGA 60.626 45.833 0.00 0.00 0.00 4.20
338 339 3.629398 GCTAGATCCATGAACACAAAGGG 59.371 47.826 0.00 0.00 0.00 3.95
339 340 4.264253 TGCTAGATCCATGAACACAAAGG 58.736 43.478 0.00 0.00 0.00 3.11
340 341 7.228108 ACATATGCTAGATCCATGAACACAAAG 59.772 37.037 1.58 0.00 0.00 2.77
341 342 7.012610 CACATATGCTAGATCCATGAACACAAA 59.987 37.037 1.58 0.00 0.00 2.83
342 343 6.484308 CACATATGCTAGATCCATGAACACAA 59.516 38.462 1.58 0.00 0.00 3.33
343 344 5.993441 CACATATGCTAGATCCATGAACACA 59.007 40.000 1.58 0.00 0.00 3.72
344 345 5.994054 ACACATATGCTAGATCCATGAACAC 59.006 40.000 1.58 0.00 0.00 3.32
345 346 5.993441 CACACATATGCTAGATCCATGAACA 59.007 40.000 1.58 0.00 0.00 3.18
346 347 6.226052 TCACACATATGCTAGATCCATGAAC 58.774 40.000 1.58 0.00 0.00 3.18
347 348 6.423776 TCACACATATGCTAGATCCATGAA 57.576 37.500 1.58 0.00 0.00 2.57
348 349 6.616237 ATCACACATATGCTAGATCCATGA 57.384 37.500 1.58 0.00 0.00 3.07
349 350 5.519206 CGATCACACATATGCTAGATCCATG 59.481 44.000 18.51 5.02 32.45 3.66
350 351 5.186603 ACGATCACACATATGCTAGATCCAT 59.813 40.000 18.51 9.84 32.45 3.41
351 352 4.524328 ACGATCACACATATGCTAGATCCA 59.476 41.667 18.51 0.00 32.45 3.41
352 353 5.065704 ACGATCACACATATGCTAGATCC 57.934 43.478 18.51 7.90 32.45 3.36
353 354 6.385843 AGAACGATCACACATATGCTAGATC 58.614 40.000 16.16 16.16 32.62 2.75
354 355 6.338214 AGAACGATCACACATATGCTAGAT 57.662 37.500 1.58 3.42 0.00 1.98
355 356 5.774498 AGAACGATCACACATATGCTAGA 57.226 39.130 1.58 0.00 0.00 2.43
356 357 5.750547 ACAAGAACGATCACACATATGCTAG 59.249 40.000 1.58 0.00 0.00 3.42
357 358 5.660460 ACAAGAACGATCACACATATGCTA 58.340 37.500 1.58 0.00 0.00 3.49
358 359 4.507710 ACAAGAACGATCACACATATGCT 58.492 39.130 1.58 0.00 0.00 3.79
359 360 4.864916 ACAAGAACGATCACACATATGC 57.135 40.909 1.58 0.00 0.00 3.14
360 361 5.122239 ACCAACAAGAACGATCACACATATG 59.878 40.000 0.00 0.00 0.00 1.78
361 362 5.245531 ACCAACAAGAACGATCACACATAT 58.754 37.500 0.00 0.00 0.00 1.78
362 363 4.637276 ACCAACAAGAACGATCACACATA 58.363 39.130 0.00 0.00 0.00 2.29
363 364 3.476552 ACCAACAAGAACGATCACACAT 58.523 40.909 0.00 0.00 0.00 3.21
364 365 2.912771 ACCAACAAGAACGATCACACA 58.087 42.857 0.00 0.00 0.00 3.72
365 366 3.963383 AACCAACAAGAACGATCACAC 57.037 42.857 0.00 0.00 0.00 3.82
366 367 3.942115 TCAAACCAACAAGAACGATCACA 59.058 39.130 0.00 0.00 0.00 3.58
367 368 4.035208 ACTCAAACCAACAAGAACGATCAC 59.965 41.667 0.00 0.00 0.00 3.06
368 369 4.035091 CACTCAAACCAACAAGAACGATCA 59.965 41.667 0.00 0.00 0.00 2.92
369 370 4.272504 TCACTCAAACCAACAAGAACGATC 59.727 41.667 0.00 0.00 0.00 3.69
370 371 4.196193 TCACTCAAACCAACAAGAACGAT 58.804 39.130 0.00 0.00 0.00 3.73
371 372 3.601435 TCACTCAAACCAACAAGAACGA 58.399 40.909 0.00 0.00 0.00 3.85
372 373 4.552166 ATCACTCAAACCAACAAGAACG 57.448 40.909 0.00 0.00 0.00 3.95
373 374 6.136541 AGAATCACTCAAACCAACAAGAAC 57.863 37.500 0.00 0.00 0.00 3.01
374 375 6.377327 GAGAATCACTCAAACCAACAAGAA 57.623 37.500 0.00 0.00 44.36 2.52
387 388 4.080638 AGGGGAAACATGAGAGAATCACTC 60.081 45.833 0.00 0.62 41.91 3.51
388 389 3.848975 AGGGGAAACATGAGAGAATCACT 59.151 43.478 0.00 0.00 41.91 3.41
389 390 4.195416 GAGGGGAAACATGAGAGAATCAC 58.805 47.826 0.00 0.00 41.91 3.06
390 391 3.118629 CGAGGGGAAACATGAGAGAATCA 60.119 47.826 0.00 0.00 43.70 2.57
391 392 3.118592 ACGAGGGGAAACATGAGAGAATC 60.119 47.826 0.00 0.00 0.00 2.52
392 393 2.840651 ACGAGGGGAAACATGAGAGAAT 59.159 45.455 0.00 0.00 0.00 2.40
393 394 2.028112 CACGAGGGGAAACATGAGAGAA 60.028 50.000 0.00 0.00 0.00 2.87
394 395 1.550524 CACGAGGGGAAACATGAGAGA 59.449 52.381 0.00 0.00 0.00 3.10
395 396 1.276421 ACACGAGGGGAAACATGAGAG 59.724 52.381 0.00 0.00 0.00 3.20
396 397 1.348064 ACACGAGGGGAAACATGAGA 58.652 50.000 0.00 0.00 0.00 3.27
397 398 2.076863 GAACACGAGGGGAAACATGAG 58.923 52.381 0.00 0.00 0.00 2.90
398 399 1.697432 AGAACACGAGGGGAAACATGA 59.303 47.619 0.00 0.00 0.00 3.07
399 400 2.185004 AGAACACGAGGGGAAACATG 57.815 50.000 0.00 0.00 0.00 3.21
400 401 2.779506 GAAGAACACGAGGGGAAACAT 58.220 47.619 0.00 0.00 0.00 2.71
401 402 1.539496 CGAAGAACACGAGGGGAAACA 60.539 52.381 0.00 0.00 0.00 2.83
402 403 1.145803 CGAAGAACACGAGGGGAAAC 58.854 55.000 0.00 0.00 0.00 2.78
403 404 0.754472 ACGAAGAACACGAGGGGAAA 59.246 50.000 0.00 0.00 34.70 3.13
404 405 0.754472 AACGAAGAACACGAGGGGAA 59.246 50.000 0.00 0.00 34.70 3.97
405 406 0.754472 AAACGAAGAACACGAGGGGA 59.246 50.000 0.00 0.00 34.70 4.81
406 407 1.529865 GAAAACGAAGAACACGAGGGG 59.470 52.381 0.00 0.00 34.70 4.79
407 408 2.480845 AGAAAACGAAGAACACGAGGG 58.519 47.619 0.00 0.00 34.70 4.30
408 409 4.201783 ACAAAGAAAACGAAGAACACGAGG 60.202 41.667 0.00 0.00 34.70 4.63
409 410 4.723862 CACAAAGAAAACGAAGAACACGAG 59.276 41.667 0.00 0.00 34.70 4.18
410 411 4.436317 CCACAAAGAAAACGAAGAACACGA 60.436 41.667 0.00 0.00 34.70 4.35
411 412 3.783943 CCACAAAGAAAACGAAGAACACG 59.216 43.478 0.00 0.00 0.00 4.49
412 413 4.102649 CCCACAAAGAAAACGAAGAACAC 58.897 43.478 0.00 0.00 0.00 3.32
413 414 4.011023 TCCCACAAAGAAAACGAAGAACA 58.989 39.130 0.00 0.00 0.00 3.18
414 415 4.625972 TCCCACAAAGAAAACGAAGAAC 57.374 40.909 0.00 0.00 0.00 3.01
415 416 4.277423 GGATCCCACAAAGAAAACGAAGAA 59.723 41.667 0.00 0.00 0.00 2.52
416 417 3.818773 GGATCCCACAAAGAAAACGAAGA 59.181 43.478 0.00 0.00 0.00 2.87
417 418 3.364964 CGGATCCCACAAAGAAAACGAAG 60.365 47.826 6.06 0.00 0.00 3.79
418 419 2.550606 CGGATCCCACAAAGAAAACGAA 59.449 45.455 6.06 0.00 0.00 3.85
419 420 2.147958 CGGATCCCACAAAGAAAACGA 58.852 47.619 6.06 0.00 0.00 3.85
420 421 1.401018 GCGGATCCCACAAAGAAAACG 60.401 52.381 6.06 0.00 0.00 3.60
421 422 1.886542 AGCGGATCCCACAAAGAAAAC 59.113 47.619 6.06 0.00 0.00 2.43
422 423 2.159382 GAGCGGATCCCACAAAGAAAA 58.841 47.619 6.06 0.00 0.00 2.29
423 424 1.613255 GGAGCGGATCCCACAAAGAAA 60.613 52.381 6.06 0.00 43.01 2.52
424 425 0.035439 GGAGCGGATCCCACAAAGAA 60.035 55.000 6.06 0.00 43.01 2.52
425 426 1.602237 GGAGCGGATCCCACAAAGA 59.398 57.895 6.06 0.00 43.01 2.52
426 427 4.225497 GGAGCGGATCCCACAAAG 57.775 61.111 6.06 0.00 43.01 2.77
434 435 1.722011 TTTCACGAAAGGAGCGGATC 58.278 50.000 0.00 0.00 0.00 3.36
435 436 2.403252 ATTTCACGAAAGGAGCGGAT 57.597 45.000 0.00 0.00 33.32 4.18
436 437 3.454375 GATATTTCACGAAAGGAGCGGA 58.546 45.455 0.00 0.00 33.32 5.54
437 438 2.218759 CGATATTTCACGAAAGGAGCGG 59.781 50.000 0.00 0.00 33.32 5.52
438 439 2.218759 CCGATATTTCACGAAAGGAGCG 59.781 50.000 0.00 7.50 33.32 5.03
439 440 2.032808 GCCGATATTTCACGAAAGGAGC 60.033 50.000 0.00 0.00 33.32 4.70
440 441 2.544267 GGCCGATATTTCACGAAAGGAG 59.456 50.000 0.00 0.00 33.32 3.69
441 442 2.093394 TGGCCGATATTTCACGAAAGGA 60.093 45.455 0.00 0.00 33.32 3.36
442 443 2.285083 TGGCCGATATTTCACGAAAGG 58.715 47.619 0.00 0.00 33.32 3.11
443 444 3.809832 AGATGGCCGATATTTCACGAAAG 59.190 43.478 0.00 0.00 33.32 2.62
444 445 3.804036 AGATGGCCGATATTTCACGAAA 58.196 40.909 0.00 0.00 34.46 3.46
445 446 3.469008 AGATGGCCGATATTTCACGAA 57.531 42.857 0.00 0.00 0.00 3.85
446 447 3.056821 CCTAGATGGCCGATATTTCACGA 60.057 47.826 0.00 0.00 0.00 4.35
447 448 3.254060 CCTAGATGGCCGATATTTCACG 58.746 50.000 0.00 0.00 0.00 4.35
448 449 3.008049 ACCCTAGATGGCCGATATTTCAC 59.992 47.826 0.00 0.00 0.00 3.18
449 450 3.248024 ACCCTAGATGGCCGATATTTCA 58.752 45.455 0.00 0.00 0.00 2.69
450 451 3.983044 ACCCTAGATGGCCGATATTTC 57.017 47.619 0.00 0.00 0.00 2.17
451 452 3.009143 GGAACCCTAGATGGCCGATATTT 59.991 47.826 0.00 0.00 0.00 1.40
452 453 2.572104 GGAACCCTAGATGGCCGATATT 59.428 50.000 0.00 0.00 0.00 1.28
453 454 2.188817 GGAACCCTAGATGGCCGATAT 58.811 52.381 0.00 0.00 0.00 1.63
454 455 1.132977 TGGAACCCTAGATGGCCGATA 60.133 52.381 0.00 0.00 0.00 2.92
455 456 0.399949 TGGAACCCTAGATGGCCGAT 60.400 55.000 0.00 0.00 0.00 4.18
456 457 1.002403 TGGAACCCTAGATGGCCGA 59.998 57.895 0.00 0.00 0.00 5.54
457 458 1.146263 GTGGAACCCTAGATGGCCG 59.854 63.158 0.00 0.00 0.00 6.13
469 470 2.711542 CTTGGTGATGTAGGGTGGAAC 58.288 52.381 0.00 0.00 0.00 3.62
470 471 1.004277 GCTTGGTGATGTAGGGTGGAA 59.996 52.381 0.00 0.00 0.00 3.53
471 472 0.618458 GCTTGGTGATGTAGGGTGGA 59.382 55.000 0.00 0.00 0.00 4.02
472 473 0.327924 TGCTTGGTGATGTAGGGTGG 59.672 55.000 0.00 0.00 0.00 4.61
473 474 2.092753 AGATGCTTGGTGATGTAGGGTG 60.093 50.000 0.00 0.00 0.00 4.61
474 475 2.200081 AGATGCTTGGTGATGTAGGGT 58.800 47.619 0.00 0.00 0.00 4.34
475 476 3.287867 AAGATGCTTGGTGATGTAGGG 57.712 47.619 0.00 0.00 0.00 3.53
476 477 6.992123 TGTATTAAGATGCTTGGTGATGTAGG 59.008 38.462 0.00 0.00 0.00 3.18
477 478 8.613060 ATGTATTAAGATGCTTGGTGATGTAG 57.387 34.615 0.00 0.00 0.00 2.74
479 480 9.006839 CATATGTATTAAGATGCTTGGTGATGT 57.993 33.333 0.00 0.00 0.00 3.06
480 481 7.966753 GCATATGTATTAAGATGCTTGGTGATG 59.033 37.037 4.29 0.00 41.19 3.07
481 482 7.666804 TGCATATGTATTAAGATGCTTGGTGAT 59.333 33.333 4.29 0.00 44.05 3.06
482 483 6.997476 TGCATATGTATTAAGATGCTTGGTGA 59.003 34.615 4.29 0.00 44.05 4.02
483 484 7.205737 TGCATATGTATTAAGATGCTTGGTG 57.794 36.000 4.29 0.00 44.05 4.17
550 551 6.698008 TCAAACCAATAGCCATTCATACAG 57.302 37.500 0.00 0.00 0.00 2.74
560 561 6.653320 TCATTATCCGTATCAAACCAATAGCC 59.347 38.462 0.00 0.00 0.00 3.93
669 670 3.863424 GGCTCGAGAATTTCACGTGATAA 59.137 43.478 20.80 16.10 32.42 1.75
674 675 2.163818 TTGGCTCGAGAATTTCACGT 57.836 45.000 18.75 0.00 32.42 4.49
857 860 7.195646 TCGATGCAAATTGGAATTGAATAGAC 58.804 34.615 0.00 0.00 26.76 2.59
863 866 8.945481 ATTTTATCGATGCAAATTGGAATTGA 57.055 26.923 8.54 0.00 0.00 2.57
1106 1115 4.090761 TCCAAATGTGAAGCAAGTCTCT 57.909 40.909 0.00 0.00 0.00 3.10
1141 1150 7.438459 CGTAGACCTCTTTCCGATGAAAAATAT 59.562 37.037 0.00 0.00 39.88 1.28
1324 1336 8.440833 GGCTCATCAAAATGAAAAATCAAAGAG 58.559 33.333 0.00 0.00 41.33 2.85
1329 1341 6.094719 CGAGGCTCATCAAAATGAAAAATCA 58.905 36.000 15.95 0.00 41.33 2.57
1418 1430 6.879400 AGATCTTTTCTTGTAAGCGGTAGAT 58.121 36.000 0.00 0.00 0.00 1.98
1460 1472 0.320421 CGTTGATGGGTGTCGAGGTT 60.320 55.000 0.00 0.00 0.00 3.50
1461 1473 1.292223 CGTTGATGGGTGTCGAGGT 59.708 57.895 0.00 0.00 0.00 3.85
1466 1478 0.960364 ACCATGCGTTGATGGGTGTC 60.960 55.000 12.90 0.00 46.46 3.67
1478 1490 0.439985 CAGTCGAAGAACACCATGCG 59.560 55.000 0.00 0.00 39.69 4.73
1501 1513 4.219115 ACATCCTCACCATCGAGAGTAAT 58.781 43.478 0.00 0.00 34.79 1.89
1613 1625 7.410991 AGTAGCTAAATAATCCCACCTTGTTT 58.589 34.615 0.00 0.00 0.00 2.83
1666 1678 6.891361 TGAATATTCTCCAAGAATTCTGGCAA 59.109 34.615 16.24 8.99 41.90 4.52
1667 1679 6.425735 TGAATATTCTCCAAGAATTCTGGCA 58.574 36.000 16.24 0.00 41.90 4.92
1668 1680 6.949352 TGAATATTCTCCAAGAATTCTGGC 57.051 37.500 16.24 0.00 41.90 4.85
1695 1707 5.872070 CCTAATATAGCTGGCTCTTTGTAGC 59.128 44.000 0.00 0.00 41.99 3.58
1697 1709 5.844516 ACCCTAATATAGCTGGCTCTTTGTA 59.155 40.000 0.00 0.00 0.00 2.41
1855 1869 3.535280 TCATTCGCATACCTGTAGCAA 57.465 42.857 0.00 0.00 0.00 3.91
1910 1924 2.912956 GGCCCATCCATAAGGTAGATCA 59.087 50.000 0.00 0.00 35.89 2.92
2050 2066 4.498009 CGATAAGCCCCAATTTACTGCTTG 60.498 45.833 5.38 0.00 41.92 4.01
2117 2133 9.352191 GGTTGTAAGACTCATAAGGATCTACTA 57.648 37.037 0.00 0.00 0.00 1.82
2172 2188 2.289565 CAAGCTAACGAATCCCCTTCC 58.710 52.381 0.00 0.00 0.00 3.46
2191 2207 5.648178 TCACCAACTCGTACTAAATAGCA 57.352 39.130 0.00 0.00 0.00 3.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.