Multiple sequence alignment - TraesCS7A01G287400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G287400 chr7A 100.000 5062 0 0 4728 9789 342613053 342618114 0.000000e+00 9348.0
1 TraesCS7A01G287400 chr7A 100.000 4380 0 0 1 4380 342608326 342612705 0.000000e+00 8089.0
2 TraesCS7A01G287400 chr7A 91.440 257 19 3 9284 9537 709991662 709991918 5.630000e-92 350.0
3 TraesCS7A01G287400 chr7A 86.047 258 28 7 652 906 342608861 342609113 4.510000e-68 270.0
4 TraesCS7A01G287400 chr7A 86.047 258 28 7 536 788 342608977 342609231 4.510000e-68 270.0
5 TraesCS7A01G287400 chr7A 95.312 128 5 1 6513 6639 342614710 342614837 1.670000e-47 202.0
6 TraesCS7A01G287400 chr7A 95.312 128 5 1 6385 6512 342614838 342614964 1.670000e-47 202.0
7 TraesCS7A01G287400 chr7A 96.970 33 1 0 9589 9621 342617881 342617913 1.000000e-03 56.5
8 TraesCS7A01G287400 chr7A 96.970 33 1 0 9556 9588 342617914 342617946 1.000000e-03 56.5
9 TraesCS7A01G287400 chr7D 97.895 4561 65 11 4728 9281 305832112 305827576 0.000000e+00 7862.0
10 TraesCS7A01G287400 chr7D 93.180 1657 100 8 3 1652 305835141 305833491 0.000000e+00 2422.0
11 TraesCS7A01G287400 chr7D 96.330 1335 24 10 1995 3305 305833495 305832162 0.000000e+00 2170.0
12 TraesCS7A01G287400 chr7D 93.352 1068 67 3 3315 4379 23557948 23556882 0.000000e+00 1576.0
13 TraesCS7A01G287400 chr7D 92.697 1068 75 3 3314 4379 132758093 132759159 0.000000e+00 1537.0
14 TraesCS7A01G287400 chr7D 91.498 247 15 5 9288 9530 392619108 392619352 1.580000e-87 335.0
15 TraesCS7A01G287400 chr7D 96.020 201 8 0 9589 9789 305827557 305827357 2.640000e-85 327.0
16 TraesCS7A01G287400 chr7D 86.296 270 31 6 543 807 305834481 305834213 1.240000e-73 289.0
17 TraesCS7A01G287400 chr7D 96.094 128 4 1 6385 6512 305830325 305830199 3.580000e-49 207.0
18 TraesCS7A01G287400 chr7D 95.312 128 5 1 6513 6639 305830453 305830326 1.670000e-47 202.0
19 TraesCS7A01G287400 chr7D 83.230 161 20 6 536 691 305834371 305834213 3.690000e-29 141.0
20 TraesCS7A01G287400 chr7D 84.746 118 14 3 5909 6023 636752713 636752597 2.230000e-21 115.0
21 TraesCS7A01G287400 chr7D 84.615 104 13 3 5918 6020 264536552 264536451 6.260000e-17 100.0
22 TraesCS7A01G287400 chr7D 96.429 56 2 0 9533 9588 305827580 305827525 1.050000e-14 93.5
23 TraesCS7A01G287400 chr7B 97.393 4565 98 14 4728 9281 290018903 290014349 0.000000e+00 7751.0
24 TraesCS7A01G287400 chr7B 94.962 1330 36 9 2001 3305 290020276 290018953 0.000000e+00 2056.0
25 TraesCS7A01G287400 chr7B 93.164 1375 76 11 15 1376 290022083 290020714 0.000000e+00 2002.0
26 TraesCS7A01G287400 chr7B 90.288 278 24 3 1376 1652 290020553 290020278 2.600000e-95 361.0
27 TraesCS7A01G287400 chr7B 95.897 195 8 0 9594 9788 290014323 290014129 5.710000e-82 316.0
28 TraesCS7A01G287400 chr7B 85.069 288 27 14 528 803 290021450 290021167 7.490000e-71 279.0
29 TraesCS7A01G287400 chr7B 96.875 128 3 1 6513 6639 290017245 290017118 7.700000e-51 213.0
30 TraesCS7A01G287400 chr7B 96.094 128 4 1 6385 6512 290017117 290016991 3.580000e-49 207.0
31 TraesCS7A01G287400 chr7B 91.071 56 5 0 9533 9588 290014351 290014296 1.050000e-09 76.8
32 TraesCS7A01G287400 chr2D 93.925 1070 61 3 3315 4380 36579669 36578600 0.000000e+00 1613.0
33 TraesCS7A01G287400 chr2D 93.855 1074 56 7 3310 4379 607135044 607136111 0.000000e+00 1609.0
34 TraesCS7A01G287400 chr2D 93.389 1074 64 5 3310 4379 645448277 645447207 0.000000e+00 1583.0
35 TraesCS7A01G287400 chr2D 89.694 359 27 6 1649 2001 62211576 62211930 5.390000e-122 449.0
36 TraesCS7A01G287400 chr2D 86.162 383 48 3 3 384 247598962 247598584 9.150000e-110 409.0
37 TraesCS7A01G287400 chr2D 90.438 251 22 2 9286 9534 382165571 382165821 7.330000e-86 329.0
38 TraesCS7A01G287400 chr2D 88.636 264 28 2 9269 9530 604025617 604025880 4.410000e-83 320.0
39 TraesCS7A01G287400 chr2D 86.008 243 30 4 8210 8451 380416770 380416531 3.510000e-64 257.0
40 TraesCS7A01G287400 chr2D 88.596 114 9 4 1397 1508 478730668 478730557 1.710000e-27 135.0
41 TraesCS7A01G287400 chr2D 87.069 116 14 1 5905 6019 220974742 220974857 7.980000e-26 130.0
42 TraesCS7A01G287400 chr1D 93.075 1083 69 5 3302 4379 238647203 238648284 0.000000e+00 1580.0
43 TraesCS7A01G287400 chr1D 90.341 352 24 6 1652 1998 113718838 113718492 4.170000e-123 453.0
44 TraesCS7A01G287400 chr1D 90.341 352 24 6 1652 1998 470005608 470005262 4.170000e-123 453.0
45 TraesCS7A01G287400 chr1D 91.985 262 17 4 9274 9532 40915089 40914829 2.010000e-96 364.0
46 TraesCS7A01G287400 chr1D 91.903 247 18 2 9286 9530 40914837 40914591 2.620000e-90 344.0
47 TraesCS7A01G287400 chr1D 89.683 252 21 4 9286 9535 315509546 315509794 5.710000e-82 316.0
48 TraesCS7A01G287400 chr1D 92.694 219 14 2 9281 9497 48731946 48732164 2.050000e-81 315.0
49 TraesCS7A01G287400 chr1D 85.714 245 31 4 8209 8451 150939278 150939036 1.260000e-63 255.0
50 TraesCS7A01G287400 chr1D 84.800 250 35 3 8209 8457 33747850 33747603 2.110000e-61 248.0
51 TraesCS7A01G287400 chr1D 84.898 245 34 3 8209 8451 268963252 268963495 2.730000e-60 244.0
52 TraesCS7A01G287400 chr1D 82.528 269 40 6 9271 9536 420947995 420948259 7.650000e-56 230.0
53 TraesCS7A01G287400 chr1D 82.996 247 38 3 9286 9531 448103379 448103136 4.600000e-53 220.0
54 TraesCS7A01G287400 chr1D 82.927 246 38 3 9286 9530 487436998 487437240 1.660000e-52 219.0
55 TraesCS7A01G287400 chr1D 82.422 256 38 5 9279 9531 423305469 423305720 5.950000e-52 217.0
56 TraesCS7A01G287400 chr1D 81.712 257 45 1 9274 9530 59557602 59557348 7.700000e-51 213.0
57 TraesCS7A01G287400 chr1D 84.653 202 29 2 8251 8451 193964420 193964220 6.000000e-47 200.0
58 TraesCS7A01G287400 chr1D 88.387 155 16 2 8287 8440 286385506 286385353 1.680000e-42 185.0
59 TraesCS7A01G287400 chr1D 84.483 174 25 2 8209 8380 22886702 22886875 4.700000e-38 171.0
60 TraesCS7A01G287400 chr1D 87.719 114 10 4 1397 1508 44694140 44694251 7.980000e-26 130.0
61 TraesCS7A01G287400 chr1D 86.408 103 13 1 5919 6020 63139429 63139531 2.890000e-20 111.0
62 TraesCS7A01G287400 chr1D 89.011 91 9 1 8314 8403 100463031 100462941 2.890000e-20 111.0
63 TraesCS7A01G287400 chr4D 92.737 1074 71 7 3310 4379 451693930 451695000 0.000000e+00 1544.0
64 TraesCS7A01G287400 chr4D 90.625 352 22 6 1652 1997 67180462 67180808 3.220000e-124 457.0
65 TraesCS7A01G287400 chr4D 92.000 250 18 2 9284 9531 503566769 503567018 5.630000e-92 350.0
66 TraesCS7A01G287400 chr4D 90.726 248 21 2 9286 9531 8196281 8196528 7.330000e-86 329.0
67 TraesCS7A01G287400 chr4D 88.281 256 27 3 9286 9538 224776751 224777006 4.440000e-78 303.0
68 TraesCS7A01G287400 chr4D 90.196 204 19 1 9287 9489 503566570 503566773 2.100000e-66 265.0
69 TraesCS7A01G287400 chr4D 85.081 248 31 4 8209 8451 346467941 346468187 2.110000e-61 248.0
70 TraesCS7A01G287400 chr4D 85.377 212 30 1 8209 8419 57485417 57485206 1.660000e-52 219.0
71 TraesCS7A01G287400 chr4D 80.738 244 39 6 8209 8451 277409013 277408777 6.040000e-42 183.0
72 TraesCS7A01G287400 chr3A 92.717 1071 71 6 3310 4377 444720820 444719754 0.000000e+00 1539.0
73 TraesCS7A01G287400 chr3A 86.753 385 45 4 3 384 265756506 265756125 3.270000e-114 424.0
74 TraesCS7A01G287400 chr3A 92.126 254 19 1 9287 9539 49166483 49166230 3.360000e-94 357.0
75 TraesCS7A01G287400 chr3A 92.369 249 19 0 9283 9531 534165838 534166086 1.210000e-93 355.0
76 TraesCS7A01G287400 chr3A 91.085 258 21 2 9275 9530 341285149 341284892 2.020000e-91 348.0
77 TraesCS7A01G287400 chr3A 87.654 243 26 3 8210 8451 215954846 215955085 7.490000e-71 279.0
78 TraesCS7A01G287400 chr3A 86.555 238 30 2 8213 8449 57281232 57281468 2.710000e-65 261.0
79 TraesCS7A01G287400 chr3A 86.066 244 30 4 8209 8451 210248746 210248986 9.750000e-65 259.0
80 TraesCS7A01G287400 chr5D 92.697 1068 75 2 3315 4379 30943108 30944175 0.000000e+00 1537.0
81 TraesCS7A01G287400 chr5D 89.694 359 27 6 1649 2001 369437155 369437509 5.390000e-122 449.0
82 TraesCS7A01G287400 chr5D 91.188 261 18 5 9278 9534 350229166 350228907 5.630000e-92 350.0
83 TraesCS7A01G287400 chr5D 89.734 263 25 2 9272 9532 423490370 423490632 1.580000e-87 335.0
84 TraesCS7A01G287400 chr5D 90.726 248 19 4 9286 9530 553874115 553874361 2.640000e-85 327.0
85 TraesCS7A01G287400 chr5D 90.400 250 18 3 9287 9530 57435864 57435615 3.410000e-84 324.0
86 TraesCS7A01G287400 chr5D 89.723 253 24 2 9281 9531 281662744 281662996 1.230000e-83 322.0
87 TraesCS7A01G287400 chr5D 85.560 277 40 0 6114 6390 283492146 283491870 3.460000e-74 291.0
88 TraesCS7A01G287400 chr5D 86.066 244 32 2 8209 8451 184080944 184081186 2.710000e-65 261.0
89 TraesCS7A01G287400 chr5D 85.950 242 31 3 8212 8451 360542099 360541859 1.260000e-63 255.0
90 TraesCS7A01G287400 chr5D 87.054 224 24 5 8229 8451 182933901 182934120 2.110000e-61 248.0
91 TraesCS7A01G287400 chr5D 85.246 244 33 2 8209 8451 329779109 329779350 2.110000e-61 248.0
92 TraesCS7A01G287400 chr5D 84.018 219 29 6 6632 6847 283491763 283491548 1.290000e-48 206.0
93 TraesCS7A01G287400 chr5D 87.179 117 11 4 1395 1509 544234798 544234684 7.980000e-26 130.0
94 TraesCS7A01G287400 chr5B 90.423 355 24 6 1649 1998 420054444 420054793 8.960000e-125 459.0
95 TraesCS7A01G287400 chr5B 89.944 358 25 8 1652 2003 141012274 141012626 1.500000e-122 451.0
96 TraesCS7A01G287400 chr5B 85.199 277 41 0 6114 6390 321623236 321622960 1.610000e-72 285.0
97 TraesCS7A01G287400 chr5B 87.124 233 28 2 8210 8440 211587108 211587340 7.540000e-66 263.0
98 TraesCS7A01G287400 chr5B 86.008 243 31 3 8209 8450 192866531 192866771 3.510000e-64 257.0
99 TraesCS7A01G287400 chr5B 84.018 219 29 6 6632 6847 321622852 321622637 1.290000e-48 206.0
100 TraesCS7A01G287400 chr3D 88.281 384 44 1 3 385 205229833 205230216 8.960000e-125 459.0
101 TraesCS7A01G287400 chr3D 89.344 366 27 6 1650 2009 560927041 560926682 5.390000e-122 449.0
102 TraesCS7A01G287400 chr3D 90.347 259 23 2 9274 9530 279935414 279935156 1.220000e-88 339.0
103 TraesCS7A01G287400 chr3D 85.981 107 14 1 5919 6024 432376972 432376866 8.040000e-21 113.0
104 TraesCS7A01G287400 chr3D 86.408 103 13 1 5919 6020 135081053 135081155 2.890000e-20 111.0
105 TraesCS7A01G287400 chr3D 85.437 103 13 2 5919 6020 194351226 194351327 1.340000e-18 106.0
106 TraesCS7A01G287400 chr1A 89.694 359 27 6 1649 2001 512617050 512617404 5.390000e-122 449.0
107 TraesCS7A01G287400 chr1A 91.633 251 18 3 9282 9530 552262821 552263070 2.620000e-90 344.0
108 TraesCS7A01G287400 chr2A 87.565 386 46 2 3 387 365390351 365389967 6.980000e-121 446.0
109 TraesCS7A01G287400 chr2A 88.696 115 9 4 1397 1509 687286588 687286700 4.770000e-28 137.0
110 TraesCS7A01G287400 chr5A 86.234 385 51 2 3 385 217934750 217935134 5.470000e-112 416.0
111 TraesCS7A01G287400 chr5A 86.089 381 48 3 3 382 194114087 194113711 1.180000e-108 405.0
112 TraesCS7A01G287400 chr5A 93.852 244 15 0 9287 9530 596018395 596018638 1.550000e-97 368.0
113 TraesCS7A01G287400 chr5A 93.522 247 15 1 9285 9531 354276388 354276633 5.590000e-97 366.0
114 TraesCS7A01G287400 chr5A 93.548 248 13 2 9283 9530 540840510 540840266 5.590000e-97 366.0
115 TraesCS7A01G287400 chr5A 91.538 260 22 0 9271 9530 624406554 624406813 9.350000e-95 359.0
116 TraesCS7A01G287400 chr5A 86.282 277 38 0 6114 6390 375577782 375577506 1.600000e-77 302.0
117 TraesCS7A01G287400 chr5A 84.475 219 28 6 6632 6847 375577399 375577184 2.770000e-50 211.0
118 TraesCS7A01G287400 chr4B 86.207 377 46 5 3 376 353504487 353504860 4.260000e-108 403.0
119 TraesCS7A01G287400 chr6A 92.369 249 18 1 9287 9534 573123234 573122986 4.350000e-93 353.0
120 TraesCS7A01G287400 chr6A 91.498 247 18 3 9288 9531 64251836 64252082 4.380000e-88 337.0
121 TraesCS7A01G287400 chr6A 89.655 261 25 2 9274 9532 30603521 30603261 2.040000e-86 331.0
122 TraesCS7A01G287400 chr6A 87.295 244 30 1 8209 8451 506643072 506642829 2.690000e-70 278.0
123 TraesCS7A01G287400 chr6A 87.826 115 10 4 1397 1509 330471211 330471323 2.220000e-26 132.0
124 TraesCS7A01G287400 chr1B 90.769 260 19 3 9274 9531 240502521 240502265 9.410000e-90 342.0
125 TraesCS7A01G287400 chr1B 85.600 250 34 2 8209 8457 51617406 51617158 2.710000e-65 261.0
126 TraesCS7A01G287400 chr6D 88.000 250 28 2 9284 9531 1617964 1618213 2.670000e-75 294.0
127 TraesCS7A01G287400 chr6D 88.115 244 28 1 8209 8451 365847127 365846884 1.240000e-73 289.0
128 TraesCS7A01G287400 chr6D 86.486 222 28 2 9280 9499 469345419 469345198 9.820000e-60 243.0
129 TraesCS7A01G287400 chr6D 84.082 245 35 4 8209 8451 126868341 126868583 5.910000e-57 233.0
130 TraesCS7A01G287400 chr6D 83.071 254 39 3 9286 9538 438515422 438515172 2.750000e-55 228.0
131 TraesCS7A01G287400 chr6D 81.818 264 45 2 9279 9541 450269582 450269321 1.660000e-52 219.0
132 TraesCS7A01G287400 chr6D 80.543 221 39 4 8233 8450 195482767 195482548 6.080000e-37 167.0
133 TraesCS7A01G287400 chr6D 79.412 238 26 3 8209 8446 319703495 319703281 7.920000e-31 147.0
134 TraesCS7A01G287400 chr6D 82.609 115 16 3 5909 6020 244648837 244648950 2.250000e-16 99.0
135 TraesCS7A01G287400 chr2B 87.719 114 10 4 1397 1508 138270842 138270731 7.980000e-26 130.0
136 TraesCS7A01G287400 chr2B 86.957 115 11 4 1398 1510 799059072 799058960 1.030000e-24 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G287400 chr7A 342608326 342618114 9788 False 2311.750000 9348 94.582250 1 9789 8 chr7A.!!$F2 9788
1 TraesCS7A01G287400 chr7D 23556882 23557948 1066 True 1576.000000 1576 93.352000 3315 4379 1 chr7D.!!$R1 1064
2 TraesCS7A01G287400 chr7D 132758093 132759159 1066 False 1537.000000 1537 92.697000 3314 4379 1 chr7D.!!$F1 1065
3 TraesCS7A01G287400 chr7D 305827357 305835141 7784 True 1523.722222 7862 93.420667 3 9789 9 chr7D.!!$R4 9786
4 TraesCS7A01G287400 chr7B 290014129 290022083 7954 True 1473.533333 7751 93.423667 15 9788 9 chr7B.!!$R1 9773
5 TraesCS7A01G287400 chr2D 36578600 36579669 1069 True 1613.000000 1613 93.925000 3315 4380 1 chr2D.!!$R1 1065
6 TraesCS7A01G287400 chr2D 607135044 607136111 1067 False 1609.000000 1609 93.855000 3310 4379 1 chr2D.!!$F5 1069
7 TraesCS7A01G287400 chr2D 645447207 645448277 1070 True 1583.000000 1583 93.389000 3310 4379 1 chr2D.!!$R5 1069
8 TraesCS7A01G287400 chr1D 238647203 238648284 1081 False 1580.000000 1580 93.075000 3302 4379 1 chr1D.!!$F5 1077
9 TraesCS7A01G287400 chr4D 451693930 451695000 1070 False 1544.000000 1544 92.737000 3310 4379 1 chr4D.!!$F5 1069
10 TraesCS7A01G287400 chr3A 444719754 444720820 1066 True 1539.000000 1539 92.717000 3310 4377 1 chr3A.!!$R4 1067
11 TraesCS7A01G287400 chr5D 30943108 30944175 1067 False 1537.000000 1537 92.697000 3315 4379 1 chr5D.!!$F1 1064
12 TraesCS7A01G287400 chr5D 283491548 283492146 598 True 248.500000 291 84.789000 6114 6847 2 chr5D.!!$R5 733
13 TraesCS7A01G287400 chr5B 321622637 321623236 599 True 245.500000 285 84.608500 6114 6847 2 chr5B.!!$R1 733
14 TraesCS7A01G287400 chr5A 375577184 375577782 598 True 256.500000 302 85.378500 6114 6847 2 chr5A.!!$R3 733

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
442 454 0.035152 TGTTGTGGGCTAGCTGGATG 60.035 55.000 15.72 0.00 0.00 3.51 F
965 983 0.304705 GTTTGCTCACACACCACTCG 59.695 55.000 0.00 0.00 0.00 4.18 F
1848 2031 0.095935 CGCCTCTCGACAAATGCAAG 59.904 55.000 0.00 0.00 41.67 4.01 F
1849 2032 1.160137 GCCTCTCGACAAATGCAAGT 58.840 50.000 0.00 0.00 0.00 3.16 F
3075 3282 1.270305 TGCCTCTCTTCCTCACAAACG 60.270 52.381 0.00 0.00 0.00 3.60 F
3930 4149 1.215673 TCACCCAACAAAGTTAGGGCA 59.784 47.619 13.64 3.17 45.45 5.36 F
4786 5007 0.609662 GTTGCCCCATGTTGCATTCT 59.390 50.000 7.16 0.00 37.33 2.40 F
4855 5076 2.687935 GCCTGGAACACTTGTTTCTTCA 59.312 45.455 0.00 0.00 38.56 3.02 F
6537 6764 1.146041 ACTGACGCTGTGCCTTTCA 59.854 52.632 0.00 0.00 0.00 2.69 F
6750 6977 0.742281 TGATGCTTCAGCTTCTCCGC 60.742 55.000 14.00 0.00 43.23 5.54 F
7700 7932 0.040958 GCTTCTGGCAAAGTGACGTG 60.041 55.000 0.00 0.00 41.35 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1829 2012 0.095935 CTTGCATTTGTCGAGAGGCG 59.904 55.000 0.00 0.0 39.79 5.52 R
2228 2422 0.421495 TCAGGATCTTGGAGGGGGAA 59.579 55.000 4.83 0.0 0.00 3.97 R
3560 3778 1.300697 GCGTCAGACCGGTTTGAGT 60.301 57.895 26.87 0.0 0.00 3.41 R
3688 3906 3.003113 GCTCGCGTAGGTGGAGGTT 62.003 63.158 5.77 0.0 0.00 3.50 R
4209 4429 0.251916 GATCCGGTGGTCATTGGTGA 59.748 55.000 0.00 0.0 0.00 4.02 R
5392 5615 1.212935 GATCTTGAAAGGCTGGCCCTA 59.787 52.381 8.11 0.0 45.62 3.53 R
5976 6200 0.639392 AGGGGAGTGGATCTACAGCT 59.361 55.000 12.16 0.0 0.00 4.24 R
6750 6977 2.315925 TAGCTCCAGGAAATTGCTCG 57.684 50.000 4.20 0.0 35.47 5.03 R
7697 7929 2.222027 AGAAAAGAAAGGGTGAGCACG 58.778 47.619 0.00 0.0 0.00 5.34 R
8356 8589 2.564062 CCAAATCATGGTTCTGGCAGTT 59.436 45.455 15.27 0.0 44.85 3.16 R
9499 9740 0.041751 CGCACATGCAACACACGTTA 60.042 50.000 4.49 0.0 42.21 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
162 163 2.852075 TCCCCGAGGCAACCTTGT 60.852 61.111 0.29 0.00 33.27 3.16
170 171 2.676471 GCAACCTTGTCGGGCCAT 60.676 61.111 4.39 0.00 36.97 4.40
214 218 1.216175 CCCAGATCAATCCACCACCAT 59.784 52.381 0.00 0.00 0.00 3.55
255 260 1.375013 GCAAAGCGACCCGAACCTA 60.375 57.895 0.00 0.00 0.00 3.08
277 282 6.381420 CCTAGGTAAAAAGAGAGAGTCCATCA 59.619 42.308 0.00 0.00 0.00 3.07
278 283 6.882768 AGGTAAAAAGAGAGAGTCCATCAT 57.117 37.500 0.00 0.00 0.00 2.45
280 285 7.108847 AGGTAAAAAGAGAGAGTCCATCATTG 58.891 38.462 0.00 0.00 0.00 2.82
294 304 0.183492 TCATTGTGCTATCCCCTGCC 59.817 55.000 0.00 0.00 0.00 4.85
344 354 0.037975 CCATGCTGAACCACAAAGGC 60.038 55.000 0.00 0.00 43.14 4.35
345 355 0.675083 CATGCTGAACCACAAAGGCA 59.325 50.000 0.00 0.00 43.14 4.75
384 395 2.742372 GTGCTTCCACGCCGACAT 60.742 61.111 0.00 0.00 31.34 3.06
442 454 0.035152 TGTTGTGGGCTAGCTGGATG 60.035 55.000 15.72 0.00 0.00 3.51
617 629 2.132762 TCTCGAACGCCAAGAACTTTC 58.867 47.619 0.00 0.00 0.00 2.62
623 635 1.947456 ACGCCAAGAACTTTCCAACTC 59.053 47.619 0.00 0.00 0.00 3.01
660 672 6.757010 ACTAATTTCGTCGCACAAAGATATCT 59.243 34.615 0.00 0.00 0.00 1.98
677 690 6.835914 AGATATCTATGTGCGCTTTTTATGC 58.164 36.000 9.73 0.00 0.00 3.14
701 714 4.321974 GGCTAAACTTGCTGCCAATAAAGT 60.322 41.667 0.00 0.00 44.34 2.66
732 745 7.172019 AGCATATGAAGAAAGCCAAAAACTTTG 59.828 33.333 6.97 0.00 37.47 2.77
793 810 6.835488 AGATATCCATGTGCCTTTTTGTATGT 59.165 34.615 0.00 0.00 0.00 2.29
828 846 8.770753 TGCTGCCAATAAAGCAAAGAGCATAC 62.771 42.308 0.00 0.00 46.06 2.39
959 977 3.764885 AAGAACAGTTTGCTCACACAC 57.235 42.857 0.00 0.00 0.00 3.82
965 983 0.304705 GTTTGCTCACACACCACTCG 59.695 55.000 0.00 0.00 0.00 4.18
969 987 1.202348 TGCTCACACACCACTCGATAG 59.798 52.381 0.00 0.00 0.00 2.08
1041 1059 1.497309 AAACATTCCCCTCGCCCTCA 61.497 55.000 0.00 0.00 0.00 3.86
1226 1244 9.557061 GGAAAGTTCTAGGAAAGACTTCTTTAA 57.443 33.333 4.18 0.00 45.37 1.52
1266 1284 6.765915 ATTAGAAGATTTTCCACAAGAGCC 57.234 37.500 0.00 0.00 33.64 4.70
1321 1339 2.076863 GTGCACCTCACTTGTATGGAC 58.923 52.381 5.22 0.00 42.38 4.02
1388 1569 9.824216 AGTGCTCCCTCTTATATAGTATTACAA 57.176 33.333 0.00 0.00 0.00 2.41
1527 1709 0.970640 TGTGCTAGCCCGTCAAGTAA 59.029 50.000 13.29 0.00 0.00 2.24
1543 1725 6.632834 CGTCAAGTAACAAAAATCCAAGTGAG 59.367 38.462 0.00 0.00 0.00 3.51
1565 1747 9.462606 GTGAGAAGATAATTAAGGGGAGAAAAA 57.537 33.333 0.00 0.00 0.00 1.94
1650 1833 0.321919 TGCCACCTGCTGACAATCTC 60.322 55.000 0.00 0.00 42.00 2.75
1651 1834 0.321919 GCCACCTGCTGACAATCTCA 60.322 55.000 0.00 0.00 36.87 3.27
1662 1845 4.277515 TGACAATCTCAGAGGGTTCTTG 57.722 45.455 0.00 0.00 0.00 3.02
1663 1846 3.903714 TGACAATCTCAGAGGGTTCTTGA 59.096 43.478 0.00 0.00 0.00 3.02
1664 1847 4.347876 TGACAATCTCAGAGGGTTCTTGAA 59.652 41.667 0.00 0.00 0.00 2.69
1665 1848 5.013495 TGACAATCTCAGAGGGTTCTTGAAT 59.987 40.000 0.00 0.00 0.00 2.57
1666 1849 5.495640 ACAATCTCAGAGGGTTCTTGAATC 58.504 41.667 0.00 0.00 0.00 2.52
1667 1850 4.769345 ATCTCAGAGGGTTCTTGAATCC 57.231 45.455 4.57 4.57 0.00 3.01
1668 1851 3.520696 TCTCAGAGGGTTCTTGAATCCA 58.479 45.455 14.30 0.00 0.00 3.41
1669 1852 3.909995 TCTCAGAGGGTTCTTGAATCCAA 59.090 43.478 14.30 0.00 0.00 3.53
1712 1895 9.654663 TGACTAAAAATAGTCTCTTTAAGAGGC 57.345 33.333 17.87 17.87 46.94 4.70
1721 1904 6.971527 GTCTCTTTAAGAGGCTAAAGTTCC 57.028 41.667 18.21 0.00 43.38 3.62
1722 1905 6.465084 GTCTCTTTAAGAGGCTAAAGTTCCA 58.535 40.000 18.21 0.00 43.38 3.53
1723 1906 6.935208 GTCTCTTTAAGAGGCTAAAGTTCCAA 59.065 38.462 18.21 0.00 43.38 3.53
1724 1907 7.118535 GTCTCTTTAAGAGGCTAAAGTTCCAAG 59.881 40.741 18.21 0.00 43.38 3.61
1725 1908 5.705905 TCTTTAAGAGGCTAAAGTTCCAAGC 59.294 40.000 7.84 0.00 39.12 4.01
1726 1909 3.508845 AAGAGGCTAAAGTTCCAAGCA 57.491 42.857 0.00 0.00 38.01 3.91
1727 1910 2.784347 AGAGGCTAAAGTTCCAAGCAC 58.216 47.619 0.00 2.09 38.01 4.40
1728 1911 2.373502 AGAGGCTAAAGTTCCAAGCACT 59.626 45.455 0.00 3.81 38.01 4.40
1729 1912 2.744741 GAGGCTAAAGTTCCAAGCACTC 59.255 50.000 0.00 7.10 38.01 3.51
1730 1913 1.813178 GGCTAAAGTTCCAAGCACTCC 59.187 52.381 7.02 0.00 38.01 3.85
1731 1914 2.553247 GGCTAAAGTTCCAAGCACTCCT 60.553 50.000 7.02 0.00 38.01 3.69
1732 1915 2.485814 GCTAAAGTTCCAAGCACTCCTG 59.514 50.000 0.00 0.00 36.26 3.86
1733 1916 3.807209 GCTAAAGTTCCAAGCACTCCTGA 60.807 47.826 0.00 0.00 36.26 3.86
1734 1917 3.515602 AAAGTTCCAAGCACTCCTGAT 57.484 42.857 0.00 0.00 0.00 2.90
1735 1918 3.515602 AAGTTCCAAGCACTCCTGATT 57.484 42.857 0.00 0.00 0.00 2.57
1736 1919 4.640771 AAGTTCCAAGCACTCCTGATTA 57.359 40.909 0.00 0.00 0.00 1.75
1737 1920 4.640771 AGTTCCAAGCACTCCTGATTAA 57.359 40.909 0.00 0.00 0.00 1.40
1738 1921 4.985538 AGTTCCAAGCACTCCTGATTAAA 58.014 39.130 0.00 0.00 0.00 1.52
1739 1922 5.385198 AGTTCCAAGCACTCCTGATTAAAA 58.615 37.500 0.00 0.00 0.00 1.52
1740 1923 5.474876 AGTTCCAAGCACTCCTGATTAAAAG 59.525 40.000 0.00 0.00 0.00 2.27
1741 1924 5.241403 TCCAAGCACTCCTGATTAAAAGA 57.759 39.130 0.00 0.00 0.00 2.52
1742 1925 5.248640 TCCAAGCACTCCTGATTAAAAGAG 58.751 41.667 0.00 0.00 0.00 2.85
1743 1926 5.013079 TCCAAGCACTCCTGATTAAAAGAGA 59.987 40.000 0.00 0.00 0.00 3.10
1744 1927 5.353678 CCAAGCACTCCTGATTAAAAGAGAG 59.646 44.000 0.00 0.00 0.00 3.20
1745 1928 5.096443 AGCACTCCTGATTAAAAGAGAGG 57.904 43.478 0.00 0.00 0.00 3.69
1746 1929 4.534103 AGCACTCCTGATTAAAAGAGAGGT 59.466 41.667 0.00 0.00 0.00 3.85
1747 1930 5.013599 AGCACTCCTGATTAAAAGAGAGGTT 59.986 40.000 0.00 0.00 0.00 3.50
1748 1931 6.213600 AGCACTCCTGATTAAAAGAGAGGTTA 59.786 38.462 0.00 0.00 0.00 2.85
1749 1932 6.879458 GCACTCCTGATTAAAAGAGAGGTTAA 59.121 38.462 0.00 0.00 0.00 2.01
1750 1933 7.390718 GCACTCCTGATTAAAAGAGAGGTTAAA 59.609 37.037 0.00 0.00 0.00 1.52
1751 1934 9.284968 CACTCCTGATTAAAAGAGAGGTTAAAA 57.715 33.333 0.00 0.00 0.00 1.52
1752 1935 9.286170 ACTCCTGATTAAAAGAGAGGTTAAAAC 57.714 33.333 0.00 0.00 0.00 2.43
1753 1936 9.508642 CTCCTGATTAAAAGAGAGGTTAAAACT 57.491 33.333 0.00 0.00 0.00 2.66
1764 1947 9.713713 AAGAGAGGTTAAAACTAATCTTGAGAC 57.286 33.333 6.83 0.00 0.00 3.36
1765 1948 9.095700 AGAGAGGTTAAAACTAATCTTGAGACT 57.904 33.333 0.00 0.00 0.00 3.24
1768 1951 9.924650 GAGGTTAAAACTAATCTTGAGACTACA 57.075 33.333 0.00 0.00 0.00 2.74
1818 2001 9.890915 ACTAAAATATGGATTAGTCCTCTCTCT 57.109 33.333 5.79 0.00 45.32 3.10
1820 2003 7.790782 AAATATGGATTAGTCCTCTCTCTCC 57.209 40.000 5.79 0.00 45.32 3.71
1821 2004 6.734918 ATATGGATTAGTCCTCTCTCTCCT 57.265 41.667 5.79 0.00 45.32 3.69
1822 2005 4.447138 TGGATTAGTCCTCTCTCTCCTC 57.553 50.000 5.79 0.00 45.32 3.71
1823 2006 3.788708 TGGATTAGTCCTCTCTCTCCTCA 59.211 47.826 5.79 0.00 45.32 3.86
1824 2007 4.418526 TGGATTAGTCCTCTCTCTCCTCAT 59.581 45.833 5.79 0.00 45.32 2.90
1825 2008 5.103301 TGGATTAGTCCTCTCTCTCCTCATT 60.103 44.000 5.79 0.00 45.32 2.57
1826 2009 5.838521 GGATTAGTCCTCTCTCTCCTCATTT 59.161 44.000 0.00 0.00 41.60 2.32
1827 2010 7.007723 GGATTAGTCCTCTCTCTCCTCATTTA 58.992 42.308 0.00 0.00 41.60 1.40
1828 2011 7.507616 GGATTAGTCCTCTCTCTCCTCATTTAA 59.492 40.741 0.00 0.00 41.60 1.52
1829 2012 7.648039 TTAGTCCTCTCTCTCCTCATTTAAC 57.352 40.000 0.00 0.00 0.00 2.01
1830 2013 4.642885 AGTCCTCTCTCTCCTCATTTAACG 59.357 45.833 0.00 0.00 0.00 3.18
1831 2014 3.381908 TCCTCTCTCTCCTCATTTAACGC 59.618 47.826 0.00 0.00 0.00 4.84
1832 2015 3.491792 CCTCTCTCTCCTCATTTAACGCC 60.492 52.174 0.00 0.00 0.00 5.68
1833 2016 3.366396 TCTCTCTCCTCATTTAACGCCT 58.634 45.455 0.00 0.00 0.00 5.52
1834 2017 3.381908 TCTCTCTCCTCATTTAACGCCTC 59.618 47.826 0.00 0.00 0.00 4.70
1835 2018 3.366396 TCTCTCCTCATTTAACGCCTCT 58.634 45.455 0.00 0.00 0.00 3.69
1836 2019 3.381908 TCTCTCCTCATTTAACGCCTCTC 59.618 47.826 0.00 0.00 0.00 3.20
1837 2020 2.099263 TCTCCTCATTTAACGCCTCTCG 59.901 50.000 0.00 0.00 45.38 4.04
1838 2021 2.097036 TCCTCATTTAACGCCTCTCGA 58.903 47.619 0.00 0.00 41.67 4.04
1839 2022 2.159282 TCCTCATTTAACGCCTCTCGAC 60.159 50.000 0.00 0.00 41.67 4.20
1840 2023 2.416836 CCTCATTTAACGCCTCTCGACA 60.417 50.000 0.00 0.00 41.67 4.35
1841 2024 3.250744 CTCATTTAACGCCTCTCGACAA 58.749 45.455 0.00 0.00 41.67 3.18
1842 2025 3.655486 TCATTTAACGCCTCTCGACAAA 58.345 40.909 0.00 0.00 41.67 2.83
1843 2026 4.250464 TCATTTAACGCCTCTCGACAAAT 58.750 39.130 0.00 0.00 41.67 2.32
1844 2027 4.092821 TCATTTAACGCCTCTCGACAAATG 59.907 41.667 15.19 15.19 44.35 2.32
1845 2028 1.355971 TAACGCCTCTCGACAAATGC 58.644 50.000 0.00 0.00 41.67 3.56
1846 2029 0.602638 AACGCCTCTCGACAAATGCA 60.603 50.000 0.00 0.00 41.67 3.96
1847 2030 0.602638 ACGCCTCTCGACAAATGCAA 60.603 50.000 0.00 0.00 41.67 4.08
1848 2031 0.095935 CGCCTCTCGACAAATGCAAG 59.904 55.000 0.00 0.00 41.67 4.01
1849 2032 1.160137 GCCTCTCGACAAATGCAAGT 58.840 50.000 0.00 0.00 0.00 3.16
1850 2033 1.537202 GCCTCTCGACAAATGCAAGTT 59.463 47.619 0.00 0.00 0.00 2.66
1851 2034 2.413371 GCCTCTCGACAAATGCAAGTTC 60.413 50.000 0.00 0.00 0.00 3.01
1852 2035 3.070018 CCTCTCGACAAATGCAAGTTCT 58.930 45.455 0.00 0.00 0.00 3.01
1853 2036 3.120408 CCTCTCGACAAATGCAAGTTCTG 60.120 47.826 0.00 0.00 0.00 3.02
1854 2037 2.807967 TCTCGACAAATGCAAGTTCTGG 59.192 45.455 0.00 0.00 0.00 3.86
1855 2038 2.807967 CTCGACAAATGCAAGTTCTGGA 59.192 45.455 0.00 0.00 0.00 3.86
1856 2039 3.411446 TCGACAAATGCAAGTTCTGGAT 58.589 40.909 0.00 0.00 37.78 3.41
1858 2041 3.916172 CGACAAATGCAAGTTCTGGATTG 59.084 43.478 0.00 0.00 44.60 2.67
1859 2042 4.320421 CGACAAATGCAAGTTCTGGATTGA 60.320 41.667 0.00 0.00 44.60 2.57
1860 2043 5.531634 GACAAATGCAAGTTCTGGATTGAA 58.468 37.500 0.00 0.00 44.60 2.69
1861 2044 5.535333 ACAAATGCAAGTTCTGGATTGAAG 58.465 37.500 0.00 0.00 44.60 3.02
1862 2045 4.796038 AATGCAAGTTCTGGATTGAAGG 57.204 40.909 0.00 0.00 43.78 3.46
1863 2046 2.517959 TGCAAGTTCTGGATTGAAGGG 58.482 47.619 0.00 0.00 0.00 3.95
1864 2047 2.158475 TGCAAGTTCTGGATTGAAGGGT 60.158 45.455 0.00 0.00 0.00 4.34
1865 2048 2.893489 GCAAGTTCTGGATTGAAGGGTT 59.107 45.455 0.00 0.00 0.00 4.11
1866 2049 3.321968 GCAAGTTCTGGATTGAAGGGTTT 59.678 43.478 0.00 0.00 0.00 3.27
1867 2050 4.797275 GCAAGTTCTGGATTGAAGGGTTTG 60.797 45.833 0.00 0.00 0.00 2.93
1868 2051 3.500343 AGTTCTGGATTGAAGGGTTTGG 58.500 45.455 0.00 0.00 0.00 3.28
1869 2052 3.140144 AGTTCTGGATTGAAGGGTTTGGA 59.860 43.478 0.00 0.00 0.00 3.53
1870 2053 3.439857 TCTGGATTGAAGGGTTTGGAG 57.560 47.619 0.00 0.00 0.00 3.86
1871 2054 2.041620 TCTGGATTGAAGGGTTTGGAGG 59.958 50.000 0.00 0.00 0.00 4.30
1872 2055 2.041620 CTGGATTGAAGGGTTTGGAGGA 59.958 50.000 0.00 0.00 0.00 3.71
1873 2056 2.654385 TGGATTGAAGGGTTTGGAGGAT 59.346 45.455 0.00 0.00 0.00 3.24
1874 2057 3.855599 TGGATTGAAGGGTTTGGAGGATA 59.144 43.478 0.00 0.00 0.00 2.59
1875 2058 4.293634 TGGATTGAAGGGTTTGGAGGATAA 59.706 41.667 0.00 0.00 0.00 1.75
1876 2059 5.043432 TGGATTGAAGGGTTTGGAGGATAAT 60.043 40.000 0.00 0.00 0.00 1.28
1877 2060 6.161348 TGGATTGAAGGGTTTGGAGGATAATA 59.839 38.462 0.00 0.00 0.00 0.98
1878 2061 7.066781 GGATTGAAGGGTTTGGAGGATAATAA 58.933 38.462 0.00 0.00 0.00 1.40
1879 2062 7.563556 GGATTGAAGGGTTTGGAGGATAATAAA 59.436 37.037 0.00 0.00 0.00 1.40
1880 2063 9.147732 GATTGAAGGGTTTGGAGGATAATAAAT 57.852 33.333 0.00 0.00 0.00 1.40
1881 2064 7.896383 TGAAGGGTTTGGAGGATAATAAATG 57.104 36.000 0.00 0.00 0.00 2.32
1882 2065 6.323739 TGAAGGGTTTGGAGGATAATAAATGC 59.676 38.462 0.00 0.00 0.00 3.56
1883 2066 6.030727 AGGGTTTGGAGGATAATAAATGCT 57.969 37.500 0.00 0.00 0.00 3.79
1884 2067 6.071320 AGGGTTTGGAGGATAATAAATGCTC 58.929 40.000 0.00 0.00 36.02 4.26
1885 2068 5.833131 GGGTTTGGAGGATAATAAATGCTCA 59.167 40.000 8.48 0.00 38.10 4.26
1886 2069 6.239036 GGGTTTGGAGGATAATAAATGCTCAC 60.239 42.308 8.48 0.00 38.10 3.51
1887 2070 6.547510 GGTTTGGAGGATAATAAATGCTCACT 59.452 38.462 8.48 0.00 38.10 3.41
1888 2071 7.719633 GGTTTGGAGGATAATAAATGCTCACTA 59.280 37.037 8.48 0.00 38.10 2.74
1889 2072 9.120538 GTTTGGAGGATAATAAATGCTCACTAA 57.879 33.333 8.48 0.00 38.10 2.24
1890 2073 8.677148 TTGGAGGATAATAAATGCTCACTAAC 57.323 34.615 8.48 0.00 38.10 2.34
1891 2074 8.034313 TGGAGGATAATAAATGCTCACTAACT 57.966 34.615 8.48 0.00 38.10 2.24
1892 2075 8.494433 TGGAGGATAATAAATGCTCACTAACTT 58.506 33.333 8.48 0.00 38.10 2.66
1893 2076 8.778358 GGAGGATAATAAATGCTCACTAACTTG 58.222 37.037 8.48 0.00 38.10 3.16
1894 2077 9.547753 GAGGATAATAAATGCTCACTAACTTGA 57.452 33.333 2.11 0.00 36.64 3.02
1902 2085 5.880054 TGCTCACTAACTTGATTTTAGCC 57.120 39.130 0.00 0.00 30.78 3.93
1903 2086 5.560724 TGCTCACTAACTTGATTTTAGCCT 58.439 37.500 0.00 0.00 30.78 4.58
1904 2087 5.643777 TGCTCACTAACTTGATTTTAGCCTC 59.356 40.000 0.00 0.00 30.78 4.70
1905 2088 5.877564 GCTCACTAACTTGATTTTAGCCTCT 59.122 40.000 0.00 0.00 30.78 3.69
1906 2089 6.372937 GCTCACTAACTTGATTTTAGCCTCTT 59.627 38.462 0.00 0.00 30.78 2.85
1907 2090 7.094592 GCTCACTAACTTGATTTTAGCCTCTTT 60.095 37.037 0.00 0.00 30.78 2.52
1908 2091 9.436957 CTCACTAACTTGATTTTAGCCTCTTTA 57.563 33.333 0.00 0.00 30.78 1.85
1909 2092 9.436957 TCACTAACTTGATTTTAGCCTCTTTAG 57.563 33.333 0.00 0.00 30.78 1.85
1910 2093 9.220767 CACTAACTTGATTTTAGCCTCTTTAGT 57.779 33.333 0.00 0.00 30.78 2.24
1917 2100 9.747898 TTGATTTTAGCCTCTTTAGTATTTGGA 57.252 29.630 0.00 0.00 0.00 3.53
1918 2101 9.920946 TGATTTTAGCCTCTTTAGTATTTGGAT 57.079 29.630 0.00 0.00 0.00 3.41
1924 2107 7.220740 AGCCTCTTTAGTATTTGGATCTAAGC 58.779 38.462 0.00 0.00 0.00 3.09
1925 2108 6.992715 GCCTCTTTAGTATTTGGATCTAAGCA 59.007 38.462 0.00 0.00 0.00 3.91
1926 2109 7.663493 GCCTCTTTAGTATTTGGATCTAAGCAT 59.337 37.037 0.00 0.00 0.00 3.79
1927 2110 8.997323 CCTCTTTAGTATTTGGATCTAAGCATG 58.003 37.037 0.00 0.00 0.00 4.06
1928 2111 8.908786 TCTTTAGTATTTGGATCTAAGCATGG 57.091 34.615 0.00 0.00 0.00 3.66
1929 2112 7.939039 TCTTTAGTATTTGGATCTAAGCATGGG 59.061 37.037 0.00 0.00 0.00 4.00
1930 2113 5.653255 AGTATTTGGATCTAAGCATGGGT 57.347 39.130 0.00 0.00 0.00 4.51
1931 2114 5.380043 AGTATTTGGATCTAAGCATGGGTG 58.620 41.667 0.00 0.00 0.00 4.61
1932 2115 4.524802 ATTTGGATCTAAGCATGGGTGA 57.475 40.909 0.00 0.00 0.00 4.02
1933 2116 3.565764 TTGGATCTAAGCATGGGTGAG 57.434 47.619 0.00 0.00 0.00 3.51
1934 2117 2.763039 TGGATCTAAGCATGGGTGAGA 58.237 47.619 0.00 0.00 0.00 3.27
1935 2118 2.435805 TGGATCTAAGCATGGGTGAGAC 59.564 50.000 0.00 0.00 0.00 3.36
1936 2119 2.703007 GGATCTAAGCATGGGTGAGACT 59.297 50.000 0.00 0.00 0.00 3.24
1937 2120 3.898123 GGATCTAAGCATGGGTGAGACTA 59.102 47.826 0.00 0.00 0.00 2.59
1938 2121 4.345257 GGATCTAAGCATGGGTGAGACTAA 59.655 45.833 0.00 0.00 0.00 2.24
1939 2122 4.737855 TCTAAGCATGGGTGAGACTAAC 57.262 45.455 0.00 0.00 0.00 2.34
1940 2123 4.093743 TCTAAGCATGGGTGAGACTAACA 58.906 43.478 0.00 0.00 0.00 2.41
1941 2124 3.788227 AAGCATGGGTGAGACTAACAA 57.212 42.857 0.00 0.00 0.00 2.83
1942 2125 3.340814 AGCATGGGTGAGACTAACAAG 57.659 47.619 0.00 0.00 0.00 3.16
1943 2126 2.639839 AGCATGGGTGAGACTAACAAGT 59.360 45.455 0.00 0.00 0.00 3.16
1944 2127 3.073062 AGCATGGGTGAGACTAACAAGTT 59.927 43.478 0.00 0.00 0.00 2.66
1945 2128 3.821033 GCATGGGTGAGACTAACAAGTTT 59.179 43.478 0.00 0.00 0.00 2.66
1946 2129 4.278419 GCATGGGTGAGACTAACAAGTTTT 59.722 41.667 0.00 0.00 0.00 2.43
1947 2130 5.472137 GCATGGGTGAGACTAACAAGTTTTA 59.528 40.000 0.00 0.00 0.00 1.52
1948 2131 6.348540 GCATGGGTGAGACTAACAAGTTTTAG 60.349 42.308 0.00 0.00 35.50 1.85
1949 2132 6.243216 TGGGTGAGACTAACAAGTTTTAGT 57.757 37.500 9.03 9.03 43.59 2.24
1972 2155 8.354711 AGTCTCACTACTTTTAGTCATCATGA 57.645 34.615 0.00 0.00 36.31 3.07
1973 2156 8.465999 AGTCTCACTACTTTTAGTCATCATGAG 58.534 37.037 0.09 0.00 36.31 2.90
1974 2157 8.462811 GTCTCACTACTTTTAGTCATCATGAGA 58.537 37.037 0.09 0.00 36.31 3.27
1975 2158 8.462811 TCTCACTACTTTTAGTCATCATGAGAC 58.537 37.037 14.04 14.04 36.31 3.36
1977 2160 9.462606 TCACTACTTTTAGTCATCATGAGACTA 57.537 33.333 21.34 21.34 44.10 2.59
1987 2170 7.772166 AGTCATCATGAGACTAAAACGTATCA 58.228 34.615 19.80 0.00 44.10 2.15
1988 2171 8.251026 AGTCATCATGAGACTAAAACGTATCAA 58.749 33.333 19.80 0.00 44.10 2.57
1989 2172 8.535592 GTCATCATGAGACTAAAACGTATCAAG 58.464 37.037 14.41 0.00 38.46 3.02
1990 2173 6.887376 TCATGAGACTAAAACGTATCAAGC 57.113 37.500 0.00 0.00 38.46 4.01
1991 2174 6.394809 TCATGAGACTAAAACGTATCAAGCA 58.605 36.000 0.00 0.00 38.46 3.91
1992 2175 6.310467 TCATGAGACTAAAACGTATCAAGCAC 59.690 38.462 0.00 0.00 38.46 4.40
1993 2176 4.927425 TGAGACTAAAACGTATCAAGCACC 59.073 41.667 0.00 0.00 32.72 5.01
1994 2177 5.148651 AGACTAAAACGTATCAAGCACCT 57.851 39.130 0.00 0.00 0.00 4.00
1995 2178 5.169295 AGACTAAAACGTATCAAGCACCTC 58.831 41.667 0.00 0.00 0.00 3.85
1996 2179 5.047235 AGACTAAAACGTATCAAGCACCTCT 60.047 40.000 0.00 0.00 0.00 3.69
1999 2182 2.949451 ACGTATCAAGCACCTCTCAG 57.051 50.000 0.00 0.00 0.00 3.35
2016 2199 2.495669 CTCAGTCACTTTCTCTCCCTCC 59.504 54.545 0.00 0.00 0.00 4.30
2018 2201 1.435168 AGTCACTTTCTCTCCCTCCCT 59.565 52.381 0.00 0.00 0.00 4.20
2394 2588 1.904990 GCGGCCCTTCTTCTTCTCCT 61.905 60.000 0.00 0.00 0.00 3.69
2711 2905 1.586422 CTGGCGACTAATCATGTGGG 58.414 55.000 0.00 0.00 0.00 4.61
2974 3168 8.387813 TCAGTACACCCCTTTAGAAAACATTAT 58.612 33.333 0.00 0.00 0.00 1.28
3075 3282 1.270305 TGCCTCTCTTCCTCACAAACG 60.270 52.381 0.00 0.00 0.00 3.60
3089 3296 4.133820 TCACAAACGGTTCTGACATCAAT 58.866 39.130 0.00 0.00 0.00 2.57
3250 3465 3.092301 TGATTGAGACATCTGACGTCCT 58.908 45.455 14.12 0.65 33.70 3.85
3256 3471 6.132791 TGAGACATCTGACGTCCTATTAAC 57.867 41.667 14.12 0.00 33.70 2.01
3259 3474 4.028131 ACATCTGACGTCCTATTAACCCA 58.972 43.478 14.12 0.00 0.00 4.51
3260 3475 4.654262 ACATCTGACGTCCTATTAACCCAT 59.346 41.667 14.12 0.00 0.00 4.00
3261 3476 5.836898 ACATCTGACGTCCTATTAACCCATA 59.163 40.000 14.12 0.00 0.00 2.74
3262 3477 6.497259 ACATCTGACGTCCTATTAACCCATAT 59.503 38.462 14.12 0.00 0.00 1.78
3265 3480 7.214381 TCTGACGTCCTATTAACCCATATTTG 58.786 38.462 14.12 0.00 0.00 2.32
3417 3635 7.692291 CCTTACAAAGTAGAACAACAATATGCG 59.308 37.037 0.00 0.00 0.00 4.73
3688 3906 1.227704 ACCACGACGCCAAATGACA 60.228 52.632 0.00 0.00 0.00 3.58
3715 3933 3.649277 CTACGCGAGCCTTGGCAGT 62.649 63.158 15.93 10.14 0.00 4.40
3716 3934 3.642778 TACGCGAGCCTTGGCAGTC 62.643 63.158 15.93 2.74 0.00 3.51
3897 4116 3.948719 AAGAAGGGAACGGCGCCA 61.949 61.111 28.98 0.00 0.00 5.69
3930 4149 1.215673 TCACCCAACAAAGTTAGGGCA 59.784 47.619 13.64 3.17 45.45 5.36
4074 4294 2.868986 GCCCGAACTAGATCCCCGG 61.869 68.421 0.00 0.00 39.85 5.73
4347 4568 4.711949 CGCAGAGGCAGGGCAACT 62.712 66.667 0.00 0.00 41.24 3.16
4786 5007 0.609662 GTTGCCCCATGTTGCATTCT 59.390 50.000 7.16 0.00 37.33 2.40
4855 5076 2.687935 GCCTGGAACACTTGTTTCTTCA 59.312 45.455 0.00 0.00 38.56 3.02
4997 5218 3.730761 CGAAGCCTGCAGTGCCAC 61.731 66.667 19.56 13.98 0.00 5.01
5392 5615 3.840666 TCACTAAGCTCTGTGGAAATCCT 59.159 43.478 15.91 0.00 36.82 3.24
5594 5817 8.627208 TCAAGTAGAGATGCTCAGAAATTTTT 57.373 30.769 0.00 0.00 32.06 1.94
5678 5901 6.042781 TGGTCCTGAACAAGTTCACTAGTTAT 59.957 38.462 11.34 0.00 43.90 1.89
5976 6200 1.352622 ACTTGAACCTGGGTGGCTGA 61.353 55.000 0.00 0.00 40.22 4.26
6033 6257 7.333323 TCTGCTCACTTCTTGATGATCATAAA 58.667 34.615 8.54 6.76 32.17 1.40
6537 6764 1.146041 ACTGACGCTGTGCCTTTCA 59.854 52.632 0.00 0.00 0.00 2.69
6750 6977 0.742281 TGATGCTTCAGCTTCTCCGC 60.742 55.000 14.00 0.00 43.23 5.54
6854 7081 7.939588 AGCTCATTGAGTTAGTAGTTTCCTTTT 59.060 33.333 14.90 0.00 31.39 2.27
6877 7105 4.219070 TGCTGCTTCTGCTTTATGATTTGT 59.781 37.500 0.00 0.00 40.48 2.83
6940 7168 6.607004 ATCGTAAGGAAGGGGATACAATAG 57.393 41.667 0.00 0.00 36.27 1.73
7188 7416 9.926158 TGAAATTTCATGCATGTAAAGTGTTAT 57.074 25.926 25.43 9.33 31.01 1.89
7200 7428 9.621629 CATGTAAAGTGTTATAATTGTCCCCTA 57.378 33.333 0.00 0.00 0.00 3.53
7412 7640 6.839124 TCAGGTGTTTCATTTCATGCTAAT 57.161 33.333 0.00 0.00 0.00 1.73
7538 7766 1.070914 GGCTACTATGTTCCCTCTGCC 59.929 57.143 0.00 0.00 0.00 4.85
7539 7767 2.043227 GCTACTATGTTCCCTCTGCCT 58.957 52.381 0.00 0.00 0.00 4.75
7540 7768 2.436173 GCTACTATGTTCCCTCTGCCTT 59.564 50.000 0.00 0.00 0.00 4.35
7541 7769 3.118223 GCTACTATGTTCCCTCTGCCTTT 60.118 47.826 0.00 0.00 0.00 3.11
7700 7932 0.040958 GCTTCTGGCAAAGTGACGTG 60.041 55.000 0.00 0.00 41.35 4.49
7895 8127 6.823689 TGGTTAAGCATCTATTGGTTTCTCTC 59.176 38.462 2.54 0.00 43.35 3.20
8067 8300 8.664798 GGAAATTTTCTTTTAGCAACACTGTTT 58.335 29.630 8.93 0.00 0.00 2.83
8283 8516 2.151502 TGACATGGGAGGAGTCTCTC 57.848 55.000 0.00 0.00 40.89 3.20
8356 8589 3.553508 GGGTGCGAGTAAGTTAGTTGTCA 60.554 47.826 6.80 3.39 0.00 3.58
8373 8606 2.224843 TGTCAACTGCCAGAACCATGAT 60.225 45.455 0.00 0.00 0.00 2.45
8625 8862 4.707105 TCCTTGAACATGATATCACGCAT 58.293 39.130 7.78 0.00 0.00 4.73
8704 8941 1.266718 GACAATGTTCAAGAAGCGGCA 59.733 47.619 1.45 0.00 0.00 5.69
8722 8959 2.641815 GGCAAGGGAGACAGATGGATAT 59.358 50.000 0.00 0.00 0.00 1.63
8805 9042 6.693545 GTCATATGAAGTAAGTTGTCTCCTCG 59.306 42.308 7.07 0.00 0.00 4.63
8935 9173 5.134202 TGCACTGGTATCCTATACATTCG 57.866 43.478 0.00 0.00 0.00 3.34
9024 9263 0.478072 AATGTGTGCCAAGGGACAGA 59.522 50.000 14.02 13.32 46.56 3.41
9086 9325 7.306807 CGCGAAGAGATCATAAGAGCAATAAAA 60.307 37.037 0.00 0.00 30.99 1.52
9215 9454 4.752101 TCAGCTTTCTCTTTGCTTGTAGTC 59.248 41.667 0.00 0.00 34.51 2.59
9276 9517 5.216648 TGTAAAACCTTGCGTTGCTTTATC 58.783 37.500 0.00 0.00 33.93 1.75
9277 9518 4.584327 AAAACCTTGCGTTGCTTTATCT 57.416 36.364 0.00 0.00 33.93 1.98
9278 9519 5.699097 AAAACCTTGCGTTGCTTTATCTA 57.301 34.783 0.00 0.00 33.93 1.98
9279 9520 5.897377 AAACCTTGCGTTGCTTTATCTAT 57.103 34.783 0.00 0.00 33.93 1.98
9280 9521 6.995511 AAACCTTGCGTTGCTTTATCTATA 57.004 33.333 0.00 0.00 33.93 1.31
9281 9522 7.568199 AAACCTTGCGTTGCTTTATCTATAT 57.432 32.000 0.00 0.00 33.93 0.86
9282 9523 6.787085 ACCTTGCGTTGCTTTATCTATATC 57.213 37.500 0.00 0.00 0.00 1.63
9283 9524 6.525629 ACCTTGCGTTGCTTTATCTATATCT 58.474 36.000 0.00 0.00 0.00 1.98
9284 9525 7.667557 ACCTTGCGTTGCTTTATCTATATCTA 58.332 34.615 0.00 0.00 0.00 1.98
9285 9526 8.314751 ACCTTGCGTTGCTTTATCTATATCTAT 58.685 33.333 0.00 0.00 0.00 1.98
9286 9527 9.803315 CCTTGCGTTGCTTTATCTATATCTATA 57.197 33.333 0.00 0.00 0.00 1.31
9341 9582 4.825422 GATCTAATTGATCTCGGCCATCA 58.175 43.478 2.24 1.01 46.05 3.07
9342 9583 4.687901 TCTAATTGATCTCGGCCATCAA 57.312 40.909 16.80 16.80 42.93 2.57
9343 9584 5.034852 TCTAATTGATCTCGGCCATCAAA 57.965 39.130 18.01 5.17 42.23 2.69
9344 9585 4.816385 TCTAATTGATCTCGGCCATCAAAC 59.184 41.667 18.01 0.00 42.23 2.93
9345 9586 2.787473 TTGATCTCGGCCATCAAACT 57.213 45.000 13.17 0.00 37.33 2.66
9346 9587 3.904800 TTGATCTCGGCCATCAAACTA 57.095 42.857 13.17 0.00 37.33 2.24
9347 9588 3.904800 TGATCTCGGCCATCAAACTAA 57.095 42.857 2.24 0.00 0.00 2.24
9348 9589 3.797039 TGATCTCGGCCATCAAACTAAG 58.203 45.455 2.24 0.00 0.00 2.18
9349 9590 3.197766 TGATCTCGGCCATCAAACTAAGT 59.802 43.478 2.24 0.00 0.00 2.24
9350 9591 3.695830 TCTCGGCCATCAAACTAAGTT 57.304 42.857 2.24 0.00 0.00 2.66
9351 9592 4.811969 TCTCGGCCATCAAACTAAGTTA 57.188 40.909 2.24 0.00 0.00 2.24
9352 9593 5.155278 TCTCGGCCATCAAACTAAGTTAA 57.845 39.130 2.24 0.00 0.00 2.01
9353 9594 5.741011 TCTCGGCCATCAAACTAAGTTAAT 58.259 37.500 2.24 0.00 0.00 1.40
9354 9595 6.177610 TCTCGGCCATCAAACTAAGTTAATT 58.822 36.000 2.24 0.00 0.00 1.40
9355 9596 6.315393 TCTCGGCCATCAAACTAAGTTAATTC 59.685 38.462 2.24 0.00 0.00 2.17
9356 9597 5.941058 TCGGCCATCAAACTAAGTTAATTCA 59.059 36.000 2.24 0.00 0.00 2.57
9357 9598 6.431543 TCGGCCATCAAACTAAGTTAATTCAA 59.568 34.615 2.24 0.00 0.00 2.69
9358 9599 6.526674 CGGCCATCAAACTAAGTTAATTCAAC 59.473 38.462 2.24 0.00 37.41 3.18
9371 9612 7.483580 AGTTAATTCAACTACCTAGACTGCT 57.516 36.000 0.00 0.00 45.93 4.24
9372 9613 7.908453 AGTTAATTCAACTACCTAGACTGCTT 58.092 34.615 0.00 0.00 45.93 3.91
9373 9614 8.035984 AGTTAATTCAACTACCTAGACTGCTTC 58.964 37.037 0.00 0.00 45.93 3.86
9374 9615 6.360370 AATTCAACTACCTAGACTGCTTCA 57.640 37.500 0.00 0.00 0.00 3.02
9375 9616 5.801531 TTCAACTACCTAGACTGCTTCAA 57.198 39.130 0.00 0.00 0.00 2.69
9376 9617 6.360370 TTCAACTACCTAGACTGCTTCAAT 57.640 37.500 0.00 0.00 0.00 2.57
9377 9618 5.724328 TCAACTACCTAGACTGCTTCAATG 58.276 41.667 0.00 0.00 0.00 2.82
9378 9619 4.744795 ACTACCTAGACTGCTTCAATGG 57.255 45.455 0.00 0.00 0.00 3.16
9379 9620 2.409948 ACCTAGACTGCTTCAATGGC 57.590 50.000 0.00 0.00 0.00 4.40
9380 9621 1.293924 CCTAGACTGCTTCAATGGCG 58.706 55.000 0.00 0.00 0.00 5.69
9381 9622 1.134699 CCTAGACTGCTTCAATGGCGA 60.135 52.381 0.00 0.00 0.00 5.54
9382 9623 2.200067 CTAGACTGCTTCAATGGCGAG 58.800 52.381 0.00 0.00 0.00 5.03
9383 9624 1.023513 AGACTGCTTCAATGGCGAGC 61.024 55.000 0.00 0.00 36.95 5.03
9384 9625 2.301902 GACTGCTTCAATGGCGAGCG 62.302 60.000 0.00 0.00 39.23 5.03
9385 9626 2.358615 TGCTTCAATGGCGAGCGT 60.359 55.556 0.00 0.00 39.23 5.07
9386 9627 1.915614 CTGCTTCAATGGCGAGCGTT 61.916 55.000 0.00 0.00 39.23 4.84
9387 9628 0.672091 TGCTTCAATGGCGAGCGTTA 60.672 50.000 0.00 0.00 39.23 3.18
9388 9629 0.446222 GCTTCAATGGCGAGCGTTAA 59.554 50.000 0.00 0.00 0.00 2.01
9389 9630 1.135803 GCTTCAATGGCGAGCGTTAAA 60.136 47.619 0.00 0.00 0.00 1.52
9390 9631 2.505866 CTTCAATGGCGAGCGTTAAAC 58.494 47.619 0.00 0.00 0.00 2.01
9391 9632 1.514003 TCAATGGCGAGCGTTAAACA 58.486 45.000 0.00 0.00 0.00 2.83
9392 9633 2.080693 TCAATGGCGAGCGTTAAACAT 58.919 42.857 0.00 0.00 0.00 2.71
9393 9634 2.159585 TCAATGGCGAGCGTTAAACATG 60.160 45.455 0.00 0.00 0.00 3.21
9394 9635 1.448985 ATGGCGAGCGTTAAACATGT 58.551 45.000 0.00 0.00 0.00 3.21
9395 9636 1.231221 TGGCGAGCGTTAAACATGTT 58.769 45.000 4.92 4.92 0.00 2.71
9396 9637 1.604755 TGGCGAGCGTTAAACATGTTT 59.395 42.857 25.99 25.99 36.63 2.83
9397 9638 2.806818 TGGCGAGCGTTAAACATGTTTA 59.193 40.909 23.91 23.91 34.23 2.01
9398 9639 3.250280 TGGCGAGCGTTAAACATGTTTAA 59.750 39.130 30.77 30.77 41.23 1.52
9414 9655 9.847706 AACATGTTTAACGTGCAATTAATATCA 57.152 25.926 16.24 6.36 38.65 2.15
9418 9659 9.938670 TGTTTAACGTGCAATTAATATCATACC 57.061 29.630 5.50 0.00 0.00 2.73
9419 9660 9.938670 GTTTAACGTGCAATTAATATCATACCA 57.061 29.630 5.50 0.00 0.00 3.25
9449 9690 8.785329 TTGCACTAATCATAGATTAACACACA 57.215 30.769 0.00 0.00 33.15 3.72
9450 9691 8.785329 TGCACTAATCATAGATTAACACACAA 57.215 30.769 1.63 0.00 33.15 3.33
9451 9692 9.225436 TGCACTAATCATAGATTAACACACAAA 57.775 29.630 1.63 0.00 33.15 2.83
9479 9720 9.884636 AATAGTATACCTAATATTCGCATGCAA 57.115 29.630 19.57 11.51 0.00 4.08
9481 9722 8.792830 AGTATACCTAATATTCGCATGCAATT 57.207 30.769 19.57 13.11 0.00 2.32
9482 9723 9.884636 AGTATACCTAATATTCGCATGCAATTA 57.115 29.630 19.57 13.51 0.00 1.40
9512 9753 7.436430 TTCCTAAATATTAACGTGTGTTGCA 57.564 32.000 0.00 0.00 39.12 4.08
9513 9754 7.618502 TCCTAAATATTAACGTGTGTTGCAT 57.381 32.000 0.00 0.00 39.12 3.96
9514 9755 7.468441 TCCTAAATATTAACGTGTGTTGCATG 58.532 34.615 0.00 0.00 39.12 4.06
9516 9757 6.926280 AAATATTAACGTGTGTTGCATGTG 57.074 33.333 0.00 0.00 45.86 3.21
9517 9758 2.112475 TTAACGTGTGTTGCATGTGC 57.888 45.000 0.00 0.00 45.86 4.57
9518 9759 0.041751 TAACGTGTGTTGCATGTGCG 60.042 50.000 0.00 0.00 45.86 5.34
9519 9760 1.987704 AACGTGTGTTGCATGTGCGT 61.988 50.000 0.00 0.00 45.86 5.24
9520 9761 1.154814 ACGTGTGTTGCATGTGCGTA 61.155 50.000 0.01 0.00 44.95 4.42
9521 9762 0.165727 CGTGTGTTGCATGTGCGTAT 59.834 50.000 0.01 0.00 45.83 3.06
9522 9763 1.399599 CGTGTGTTGCATGTGCGTATT 60.400 47.619 0.01 0.00 45.83 1.89
9523 9764 2.660490 GTGTGTTGCATGTGCGTATTT 58.340 42.857 0.01 0.00 45.83 1.40
9524 9765 3.665585 CGTGTGTTGCATGTGCGTATTTA 60.666 43.478 0.01 0.00 45.83 1.40
9525 9766 3.602062 GTGTGTTGCATGTGCGTATTTAC 59.398 43.478 0.01 0.00 45.83 2.01
9526 9767 3.500299 TGTGTTGCATGTGCGTATTTACT 59.500 39.130 0.01 0.00 45.83 2.24
9527 9768 4.691216 TGTGTTGCATGTGCGTATTTACTA 59.309 37.500 0.01 0.00 45.83 1.82
9528 9769 5.163903 TGTGTTGCATGTGCGTATTTACTAG 60.164 40.000 0.01 0.00 45.83 2.57
9529 9770 4.932799 TGTTGCATGTGCGTATTTACTAGT 59.067 37.500 0.00 0.00 45.83 2.57
9530 9771 6.035220 GTGTTGCATGTGCGTATTTACTAGTA 59.965 38.462 0.00 0.00 45.83 1.82
9531 9772 6.035220 TGTTGCATGTGCGTATTTACTAGTAC 59.965 38.462 0.91 0.00 45.83 2.73
9562 9803 4.574599 GCCGAAAGCCTATTTCATGATT 57.425 40.909 0.00 0.00 34.35 2.57
9563 9804 4.293415 GCCGAAAGCCTATTTCATGATTG 58.707 43.478 0.00 0.00 34.35 2.67
9564 9805 4.202050 GCCGAAAGCCTATTTCATGATTGT 60.202 41.667 0.00 0.00 34.35 2.71
9565 9806 5.008613 GCCGAAAGCCTATTTCATGATTGTA 59.991 40.000 0.00 0.00 34.35 2.41
9566 9807 6.662616 CCGAAAGCCTATTTCATGATTGTAG 58.337 40.000 0.00 0.00 0.00 2.74
9567 9808 6.293626 CCGAAAGCCTATTTCATGATTGTAGG 60.294 42.308 17.75 17.75 35.98 3.18
9568 9809 6.483307 CGAAAGCCTATTTCATGATTGTAGGA 59.517 38.462 22.83 0.00 35.08 2.94
9569 9810 7.173907 CGAAAGCCTATTTCATGATTGTAGGAT 59.826 37.037 22.83 17.45 35.08 3.24
9570 9811 7.992754 AAGCCTATTTCATGATTGTAGGATC 57.007 36.000 22.83 12.04 35.08 3.36
9571 9812 7.083062 AGCCTATTTCATGATTGTAGGATCA 57.917 36.000 22.83 0.00 40.11 2.92
9572 9813 7.166851 AGCCTATTTCATGATTGTAGGATCAG 58.833 38.462 22.83 5.94 39.26 2.90
9573 9814 6.373774 GCCTATTTCATGATTGTAGGATCAGG 59.626 42.308 22.83 7.93 39.26 3.86
9574 9815 7.456725 CCTATTTCATGATTGTAGGATCAGGT 58.543 38.462 17.40 0.00 39.26 4.00
9575 9816 8.597167 CCTATTTCATGATTGTAGGATCAGGTA 58.403 37.037 17.40 0.00 39.26 3.08
9578 9819 6.272822 TCATGATTGTAGGATCAGGTATCG 57.727 41.667 0.00 0.00 39.26 2.92
9579 9820 6.010219 TCATGATTGTAGGATCAGGTATCGA 58.990 40.000 0.00 0.00 39.26 3.59
9580 9821 6.493458 TCATGATTGTAGGATCAGGTATCGAA 59.507 38.462 0.00 0.00 39.26 3.71
9581 9822 6.085555 TGATTGTAGGATCAGGTATCGAAC 57.914 41.667 0.00 0.00 35.21 3.95
9582 9823 4.563337 TTGTAGGATCAGGTATCGAACG 57.437 45.455 0.00 0.00 35.21 3.95
9583 9824 2.882761 TGTAGGATCAGGTATCGAACGG 59.117 50.000 0.00 0.00 35.21 4.44
9584 9825 1.329256 AGGATCAGGTATCGAACGGG 58.671 55.000 0.00 0.00 35.21 5.28
9585 9826 0.317479 GGATCAGGTATCGAACGGGG 59.683 60.000 0.00 0.00 35.21 5.73
9586 9827 1.038280 GATCAGGTATCGAACGGGGT 58.962 55.000 0.00 0.00 0.00 4.95
9587 9828 0.750850 ATCAGGTATCGAACGGGGTG 59.249 55.000 0.00 0.00 0.00 4.61
9588 9829 0.612732 TCAGGTATCGAACGGGGTGT 60.613 55.000 0.00 0.00 0.00 4.16
9589 9830 0.179119 CAGGTATCGAACGGGGTGTC 60.179 60.000 0.00 0.00 0.00 3.67
9711 9952 7.228706 GGTCAAGATTAAACTGAGAAGACCAAA 59.771 37.037 0.00 0.00 40.99 3.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 6.808321 TTTGGGTGTGATTAGATAGCTAGT 57.192 37.500 0.00 0.00 0.00 2.57
84 85 2.043953 CCCCTTGCTAGGTTGCCC 60.044 66.667 13.38 0.00 40.19 5.36
108 109 4.280436 ACAAGTGTTGTGGGATCGAATA 57.720 40.909 0.00 0.00 43.48 1.75
214 218 2.167075 GCGTAAAACCCTACTCCTGCTA 59.833 50.000 0.00 0.00 0.00 3.49
245 249 4.162651 TCTCTTTTTACCTAGGTTCGGGT 58.837 43.478 22.11 0.00 39.40 5.28
255 260 6.882768 ATGATGGACTCTCTCTTTTTACCT 57.117 37.500 0.00 0.00 0.00 3.08
277 282 1.149174 CGGCAGGGGATAGCACAAT 59.851 57.895 0.00 0.00 0.00 2.71
278 283 1.847798 AACGGCAGGGGATAGCACAA 61.848 55.000 0.00 0.00 0.00 3.33
280 285 1.077716 AAACGGCAGGGGATAGCAC 60.078 57.895 0.00 0.00 0.00 4.40
294 304 2.111756 GTTGCACAAAGAGCAGAAACG 58.888 47.619 0.00 0.00 43.75 3.60
331 341 0.324738 TGGGTTGCCTTTGTGGTTCA 60.325 50.000 0.00 0.00 38.35 3.18
344 354 4.605064 CCTATGGGGCATGGGTTG 57.395 61.111 0.00 0.00 37.65 3.77
384 395 1.674441 CCTCGCTAATGACTACCGACA 59.326 52.381 0.00 0.00 0.00 4.35
442 454 2.418280 GCTTACAGCTCTTGAAGGAAGC 59.582 50.000 1.08 1.08 38.45 3.86
472 484 1.682344 GGACAAAGATGCCCACCCC 60.682 63.158 0.00 0.00 0.00 4.95
545 557 6.726258 TTAGTCATACAGAAAGCACACATG 57.274 37.500 0.00 0.00 0.00 3.21
600 612 0.941542 TGGAAAGTTCTTGGCGTTCG 59.058 50.000 0.00 0.00 0.00 3.95
617 629 2.006888 AGTTGTTGTGTGACGAGTTGG 58.993 47.619 0.00 0.00 0.00 3.77
623 635 4.828704 ACGAAATTAGTTGTTGTGTGACG 58.171 39.130 0.00 0.00 0.00 4.35
701 714 4.847198 TGGCTTTCTTCATATGCTCTTCA 58.153 39.130 0.00 0.00 0.00 3.02
732 745 3.904136 AGTTGTTATGTGACAAGCTGC 57.096 42.857 0.00 0.00 39.97 5.25
793 810 4.862902 TTATTGGCAGCAAGTTTAGCAA 57.137 36.364 0.00 0.00 0.00 3.91
818 836 4.844349 TGGCTTTCTAGGTATGCTCTTT 57.156 40.909 0.00 0.00 0.00 2.52
828 846 7.272037 TCTGTAAAGTTTTTGGCTTTCTAGG 57.728 36.000 0.00 0.00 37.37 3.02
939 957 2.423538 GGTGTGTGAGCAAACTGTTCTT 59.576 45.455 0.00 0.00 33.40 2.52
959 977 4.950475 TGGAAGGATATAGCTATCGAGTGG 59.050 45.833 10.16 0.00 35.53 4.00
969 987 7.406104 AGGGATAAACAATGGAAGGATATAGC 58.594 38.462 0.00 0.00 0.00 2.97
1026 1044 3.090532 GGTGAGGGCGAGGGGAAT 61.091 66.667 0.00 0.00 0.00 3.01
1041 1059 1.608590 CATTGTTCACGCTTGGAAGGT 59.391 47.619 0.00 0.00 0.00 3.50
1165 1183 8.737168 ATTACTGCATATGAAACTCAAAGCTA 57.263 30.769 6.97 0.00 0.00 3.32
1200 1218 9.557061 TTAAAGAAGTCTTTCCTAGAACTTTCC 57.443 33.333 9.52 0.00 44.34 3.13
1217 1235 3.330267 CTCGAAGCTGCCTTAAAGAAGT 58.670 45.455 0.00 0.00 0.00 3.01
1226 1244 2.338577 AATTATGCTCGAAGCTGCCT 57.661 45.000 0.00 0.00 42.97 4.75
1321 1339 7.979444 TGTAGGATCAACTTTTAGTCCTTTG 57.021 36.000 0.00 0.00 39.81 2.77
1483 1665 3.327439 TCTCTCCCTCCCAAAACTTCTT 58.673 45.455 0.00 0.00 0.00 2.52
1485 1667 2.640332 ACTCTCTCCCTCCCAAAACTTC 59.360 50.000 0.00 0.00 0.00 3.01
1556 1738 8.793592 ACATATCACTTGTAAACTTTTTCTCCC 58.206 33.333 0.00 0.00 0.00 4.30
1565 1747 9.295825 TGATTTTGGACATATCACTTGTAAACT 57.704 29.630 0.00 0.00 0.00 2.66
1593 1776 2.691663 GGGGTAGGACATGACCACA 58.308 57.895 16.63 0.79 39.12 4.17
1686 1869 9.654663 GCCTCTTAAAGAGACTATTTTTAGTCA 57.345 33.333 13.86 0.00 45.07 3.41
1687 1870 9.878667 AGCCTCTTAAAGAGACTATTTTTAGTC 57.121 33.333 0.00 5.24 45.07 2.59
1694 1877 9.878667 GAACTTTAGCCTCTTAAAGAGACTATT 57.121 33.333 11.30 0.00 45.07 1.73
1695 1878 8.479689 GGAACTTTAGCCTCTTAAAGAGACTAT 58.520 37.037 11.30 0.00 45.07 2.12
1696 1879 7.453752 TGGAACTTTAGCCTCTTAAAGAGACTA 59.546 37.037 11.30 0.40 45.07 2.59
1697 1880 6.270231 TGGAACTTTAGCCTCTTAAAGAGACT 59.730 38.462 11.30 1.37 45.07 3.24
1698 1881 6.465084 TGGAACTTTAGCCTCTTAAAGAGAC 58.535 40.000 11.30 0.00 45.07 3.36
1699 1882 6.681729 TGGAACTTTAGCCTCTTAAAGAGA 57.318 37.500 11.30 0.00 45.07 3.10
1700 1883 6.128145 GCTTGGAACTTTAGCCTCTTAAAGAG 60.128 42.308 11.30 0.56 41.17 2.85
1701 1884 5.705905 GCTTGGAACTTTAGCCTCTTAAAGA 59.294 40.000 11.30 0.00 41.17 2.52
1702 1885 5.473504 TGCTTGGAACTTTAGCCTCTTAAAG 59.526 40.000 4.46 4.46 43.21 1.85
1703 1886 5.240844 GTGCTTGGAACTTTAGCCTCTTAAA 59.759 40.000 0.00 0.00 34.03 1.52
1704 1887 4.760204 GTGCTTGGAACTTTAGCCTCTTAA 59.240 41.667 0.00 0.00 34.03 1.85
1705 1888 4.041691 AGTGCTTGGAACTTTAGCCTCTTA 59.958 41.667 0.00 0.00 34.03 2.10
1706 1889 3.149981 GTGCTTGGAACTTTAGCCTCTT 58.850 45.455 0.00 0.00 34.03 2.85
1707 1890 2.373502 AGTGCTTGGAACTTTAGCCTCT 59.626 45.455 0.00 0.00 34.03 3.69
1708 1891 2.744741 GAGTGCTTGGAACTTTAGCCTC 59.255 50.000 0.00 0.00 34.03 4.70
1709 1892 2.553247 GGAGTGCTTGGAACTTTAGCCT 60.553 50.000 0.00 0.00 34.03 4.58
1710 1893 1.813178 GGAGTGCTTGGAACTTTAGCC 59.187 52.381 0.00 0.00 34.03 3.93
1711 1894 2.485814 CAGGAGTGCTTGGAACTTTAGC 59.514 50.000 0.00 0.00 35.50 3.09
1712 1895 4.008074 TCAGGAGTGCTTGGAACTTTAG 57.992 45.455 0.00 0.00 0.00 1.85
1713 1896 4.640771 ATCAGGAGTGCTTGGAACTTTA 57.359 40.909 0.00 0.00 0.00 1.85
1714 1897 3.515602 ATCAGGAGTGCTTGGAACTTT 57.484 42.857 0.00 0.00 0.00 2.66
1715 1898 3.515602 AATCAGGAGTGCTTGGAACTT 57.484 42.857 0.00 0.00 0.00 2.66
1716 1899 4.640771 TTAATCAGGAGTGCTTGGAACT 57.359 40.909 0.00 0.00 0.00 3.01
1717 1900 5.473504 TCTTTTAATCAGGAGTGCTTGGAAC 59.526 40.000 0.00 0.00 0.00 3.62
1718 1901 5.630121 TCTTTTAATCAGGAGTGCTTGGAA 58.370 37.500 0.00 0.00 0.00 3.53
1719 1902 5.013079 TCTCTTTTAATCAGGAGTGCTTGGA 59.987 40.000 0.00 0.00 0.00 3.53
1720 1903 5.248640 TCTCTTTTAATCAGGAGTGCTTGG 58.751 41.667 0.00 0.00 0.00 3.61
1721 1904 5.353678 CCTCTCTTTTAATCAGGAGTGCTTG 59.646 44.000 0.00 0.00 0.00 4.01
1722 1905 5.013599 ACCTCTCTTTTAATCAGGAGTGCTT 59.986 40.000 0.00 0.00 0.00 3.91
1723 1906 4.534103 ACCTCTCTTTTAATCAGGAGTGCT 59.466 41.667 0.00 0.00 0.00 4.40
1724 1907 4.837972 ACCTCTCTTTTAATCAGGAGTGC 58.162 43.478 0.00 0.00 0.00 4.40
1725 1908 8.848474 TTTAACCTCTCTTTTAATCAGGAGTG 57.152 34.615 0.00 0.00 0.00 3.51
1726 1909 9.286170 GTTTTAACCTCTCTTTTAATCAGGAGT 57.714 33.333 0.00 0.00 0.00 3.85
1727 1910 9.508642 AGTTTTAACCTCTCTTTTAATCAGGAG 57.491 33.333 0.00 0.00 0.00 3.69
1738 1921 9.713713 GTCTCAAGATTAGTTTTAACCTCTCTT 57.286 33.333 0.00 0.00 0.00 2.85
1739 1922 9.095700 AGTCTCAAGATTAGTTTTAACCTCTCT 57.904 33.333 0.00 0.00 0.00 3.10
1742 1925 9.924650 TGTAGTCTCAAGATTAGTTTTAACCTC 57.075 33.333 0.00 0.00 0.00 3.85
1802 1985 4.447138 TGAGGAGAGAGAGGACTAATCC 57.553 50.000 0.00 0.00 46.69 3.01
1803 1986 6.976934 AAATGAGGAGAGAGAGGACTAATC 57.023 41.667 0.00 0.00 0.00 1.75
1804 1987 7.013846 CGTTAAATGAGGAGAGAGAGGACTAAT 59.986 40.741 0.00 0.00 0.00 1.73
1805 1988 6.319152 CGTTAAATGAGGAGAGAGAGGACTAA 59.681 42.308 0.00 0.00 0.00 2.24
1806 1989 5.823570 CGTTAAATGAGGAGAGAGAGGACTA 59.176 44.000 0.00 0.00 0.00 2.59
1807 1990 4.642885 CGTTAAATGAGGAGAGAGAGGACT 59.357 45.833 0.00 0.00 0.00 3.85
1808 1991 4.735283 GCGTTAAATGAGGAGAGAGAGGAC 60.735 50.000 0.00 0.00 0.00 3.85
1809 1992 3.381908 GCGTTAAATGAGGAGAGAGAGGA 59.618 47.826 0.00 0.00 0.00 3.71
1810 1993 3.491792 GGCGTTAAATGAGGAGAGAGAGG 60.492 52.174 0.00 0.00 0.00 3.69
1811 1994 3.383185 AGGCGTTAAATGAGGAGAGAGAG 59.617 47.826 0.00 0.00 0.00 3.20
1812 1995 3.366396 AGGCGTTAAATGAGGAGAGAGA 58.634 45.455 0.00 0.00 0.00 3.10
1813 1996 3.383185 AGAGGCGTTAAATGAGGAGAGAG 59.617 47.826 0.00 0.00 0.00 3.20
1814 1997 3.366396 AGAGGCGTTAAATGAGGAGAGA 58.634 45.455 0.00 0.00 0.00 3.10
1815 1998 3.712187 GAGAGGCGTTAAATGAGGAGAG 58.288 50.000 0.00 0.00 0.00 3.20
1816 1999 2.099263 CGAGAGGCGTTAAATGAGGAGA 59.901 50.000 0.00 0.00 34.64 3.71
1817 2000 2.099263 TCGAGAGGCGTTAAATGAGGAG 59.901 50.000 0.00 0.00 41.80 3.69
1818 2001 2.097036 TCGAGAGGCGTTAAATGAGGA 58.903 47.619 0.00 0.00 41.80 3.71
1819 2002 2.194271 GTCGAGAGGCGTTAAATGAGG 58.806 52.381 0.00 0.00 41.80 3.86
1820 2003 2.876091 TGTCGAGAGGCGTTAAATGAG 58.124 47.619 0.00 0.00 39.79 2.90
1821 2004 3.306917 TTGTCGAGAGGCGTTAAATGA 57.693 42.857 0.00 0.00 39.79 2.57
1822 2005 4.334443 CATTTGTCGAGAGGCGTTAAATG 58.666 43.478 0.00 0.00 42.03 2.32
1823 2006 3.181510 GCATTTGTCGAGAGGCGTTAAAT 60.182 43.478 0.00 0.00 39.79 1.40
1824 2007 2.158841 GCATTTGTCGAGAGGCGTTAAA 59.841 45.455 0.00 0.00 39.79 1.52
1825 2008 1.730064 GCATTTGTCGAGAGGCGTTAA 59.270 47.619 0.00 0.00 39.79 2.01
1826 2009 1.337354 TGCATTTGTCGAGAGGCGTTA 60.337 47.619 0.00 0.00 39.79 3.18
1827 2010 0.602638 TGCATTTGTCGAGAGGCGTT 60.603 50.000 0.00 0.00 39.79 4.84
1828 2011 0.602638 TTGCATTTGTCGAGAGGCGT 60.603 50.000 0.00 0.00 39.79 5.68
1829 2012 0.095935 CTTGCATTTGTCGAGAGGCG 59.904 55.000 0.00 0.00 39.79 5.52
1830 2013 1.160137 ACTTGCATTTGTCGAGAGGC 58.840 50.000 0.00 0.00 0.00 4.70
1831 2014 3.070018 AGAACTTGCATTTGTCGAGAGG 58.930 45.455 0.00 0.00 0.00 3.69
1832 2015 3.120408 CCAGAACTTGCATTTGTCGAGAG 60.120 47.826 0.00 0.00 0.00 3.20
1833 2016 2.807967 CCAGAACTTGCATTTGTCGAGA 59.192 45.455 0.00 0.00 0.00 4.04
1834 2017 2.807967 TCCAGAACTTGCATTTGTCGAG 59.192 45.455 0.00 0.00 0.00 4.04
1835 2018 2.844946 TCCAGAACTTGCATTTGTCGA 58.155 42.857 0.00 0.00 0.00 4.20
1836 2019 3.837213 ATCCAGAACTTGCATTTGTCG 57.163 42.857 0.00 0.00 0.00 4.35
1837 2020 5.125100 TCAATCCAGAACTTGCATTTGTC 57.875 39.130 0.00 0.00 0.00 3.18
1838 2021 5.510179 CCTTCAATCCAGAACTTGCATTTGT 60.510 40.000 0.00 0.00 0.00 2.83
1839 2022 4.927425 CCTTCAATCCAGAACTTGCATTTG 59.073 41.667 0.00 0.00 0.00 2.32
1840 2023 4.020839 CCCTTCAATCCAGAACTTGCATTT 60.021 41.667 0.00 0.00 0.00 2.32
1841 2024 3.512724 CCCTTCAATCCAGAACTTGCATT 59.487 43.478 0.00 0.00 0.00 3.56
1842 2025 3.094572 CCCTTCAATCCAGAACTTGCAT 58.905 45.455 0.00 0.00 0.00 3.96
1843 2026 2.158475 ACCCTTCAATCCAGAACTTGCA 60.158 45.455 0.00 0.00 0.00 4.08
1844 2027 2.519013 ACCCTTCAATCCAGAACTTGC 58.481 47.619 0.00 0.00 0.00 4.01
1845 2028 4.262164 CCAAACCCTTCAATCCAGAACTTG 60.262 45.833 0.00 0.00 0.00 3.16
1846 2029 3.897505 CCAAACCCTTCAATCCAGAACTT 59.102 43.478 0.00 0.00 0.00 2.66
1847 2030 3.140144 TCCAAACCCTTCAATCCAGAACT 59.860 43.478 0.00 0.00 0.00 3.01
1848 2031 3.496331 TCCAAACCCTTCAATCCAGAAC 58.504 45.455 0.00 0.00 0.00 3.01
1849 2032 3.500289 CCTCCAAACCCTTCAATCCAGAA 60.500 47.826 0.00 0.00 0.00 3.02
1850 2033 2.041620 CCTCCAAACCCTTCAATCCAGA 59.958 50.000 0.00 0.00 0.00 3.86
1851 2034 2.041620 TCCTCCAAACCCTTCAATCCAG 59.958 50.000 0.00 0.00 0.00 3.86
1852 2035 2.069775 TCCTCCAAACCCTTCAATCCA 58.930 47.619 0.00 0.00 0.00 3.41
1853 2036 2.899303 TCCTCCAAACCCTTCAATCC 57.101 50.000 0.00 0.00 0.00 3.01
1854 2037 8.533569 TTTATTATCCTCCAAACCCTTCAATC 57.466 34.615 0.00 0.00 0.00 2.67
1855 2038 8.927411 CATTTATTATCCTCCAAACCCTTCAAT 58.073 33.333 0.00 0.00 0.00 2.57
1856 2039 7.147742 GCATTTATTATCCTCCAAACCCTTCAA 60.148 37.037 0.00 0.00 0.00 2.69
1857 2040 6.323739 GCATTTATTATCCTCCAAACCCTTCA 59.676 38.462 0.00 0.00 0.00 3.02
1858 2041 6.551227 AGCATTTATTATCCTCCAAACCCTTC 59.449 38.462 0.00 0.00 0.00 3.46
1859 2042 6.443832 AGCATTTATTATCCTCCAAACCCTT 58.556 36.000 0.00 0.00 0.00 3.95
1860 2043 6.030727 AGCATTTATTATCCTCCAAACCCT 57.969 37.500 0.00 0.00 0.00 4.34
1861 2044 5.833131 TGAGCATTTATTATCCTCCAAACCC 59.167 40.000 0.00 0.00 0.00 4.11
1862 2045 6.547510 AGTGAGCATTTATTATCCTCCAAACC 59.452 38.462 0.00 0.00 0.00 3.27
1863 2046 7.573968 AGTGAGCATTTATTATCCTCCAAAC 57.426 36.000 0.00 0.00 0.00 2.93
1864 2047 9.120538 GTTAGTGAGCATTTATTATCCTCCAAA 57.879 33.333 0.00 0.00 0.00 3.28
1865 2048 8.494433 AGTTAGTGAGCATTTATTATCCTCCAA 58.506 33.333 0.00 0.00 0.00 3.53
1866 2049 8.034313 AGTTAGTGAGCATTTATTATCCTCCA 57.966 34.615 0.00 0.00 0.00 3.86
1867 2050 8.778358 CAAGTTAGTGAGCATTTATTATCCTCC 58.222 37.037 0.00 0.00 0.00 4.30
1868 2051 9.547753 TCAAGTTAGTGAGCATTTATTATCCTC 57.452 33.333 0.00 0.00 0.00 3.71
1876 2059 8.458843 GGCTAAAATCAAGTTAGTGAGCATTTA 58.541 33.333 0.00 0.00 32.21 1.40
1877 2060 7.177392 AGGCTAAAATCAAGTTAGTGAGCATTT 59.823 33.333 0.00 0.00 32.21 2.32
1878 2061 6.660949 AGGCTAAAATCAAGTTAGTGAGCATT 59.339 34.615 0.00 0.00 32.21 3.56
1879 2062 6.183347 AGGCTAAAATCAAGTTAGTGAGCAT 58.817 36.000 0.00 0.00 32.21 3.79
1880 2063 5.560724 AGGCTAAAATCAAGTTAGTGAGCA 58.439 37.500 0.00 0.00 32.21 4.26
1881 2064 5.877564 AGAGGCTAAAATCAAGTTAGTGAGC 59.122 40.000 0.00 0.00 32.21 4.26
1882 2065 7.913674 AAGAGGCTAAAATCAAGTTAGTGAG 57.086 36.000 0.00 0.00 32.21 3.51
1883 2066 9.436957 CTAAAGAGGCTAAAATCAAGTTAGTGA 57.563 33.333 0.00 0.00 32.21 3.41
1884 2067 9.220767 ACTAAAGAGGCTAAAATCAAGTTAGTG 57.779 33.333 0.00 0.00 32.21 2.74
1891 2074 9.747898 TCCAAATACTAAAGAGGCTAAAATCAA 57.252 29.630 0.00 0.00 0.00 2.57
1892 2075 9.920946 ATCCAAATACTAAAGAGGCTAAAATCA 57.079 29.630 0.00 0.00 0.00 2.57
1898 2081 8.368668 GCTTAGATCCAAATACTAAAGAGGCTA 58.631 37.037 0.00 0.00 0.00 3.93
1899 2082 7.147479 TGCTTAGATCCAAATACTAAAGAGGCT 60.147 37.037 0.00 0.00 0.00 4.58
1900 2083 6.992715 TGCTTAGATCCAAATACTAAAGAGGC 59.007 38.462 0.00 0.00 0.00 4.70
1901 2084 8.997323 CATGCTTAGATCCAAATACTAAAGAGG 58.003 37.037 0.00 0.00 0.00 3.69
1902 2085 8.997323 CCATGCTTAGATCCAAATACTAAAGAG 58.003 37.037 0.00 0.00 0.00 2.85
1903 2086 7.939039 CCCATGCTTAGATCCAAATACTAAAGA 59.061 37.037 0.00 0.00 0.00 2.52
1904 2087 7.721399 ACCCATGCTTAGATCCAAATACTAAAG 59.279 37.037 0.00 0.00 0.00 1.85
1905 2088 7.502226 CACCCATGCTTAGATCCAAATACTAAA 59.498 37.037 0.00 0.00 0.00 1.85
1906 2089 6.998074 CACCCATGCTTAGATCCAAATACTAA 59.002 38.462 0.00 0.00 0.00 2.24
1907 2090 6.328934 TCACCCATGCTTAGATCCAAATACTA 59.671 38.462 0.00 0.00 0.00 1.82
1908 2091 5.132648 TCACCCATGCTTAGATCCAAATACT 59.867 40.000 0.00 0.00 0.00 2.12
1909 2092 5.376625 TCACCCATGCTTAGATCCAAATAC 58.623 41.667 0.00 0.00 0.00 1.89
1910 2093 5.369404 TCTCACCCATGCTTAGATCCAAATA 59.631 40.000 0.00 0.00 0.00 1.40
1911 2094 4.166725 TCTCACCCATGCTTAGATCCAAAT 59.833 41.667 0.00 0.00 0.00 2.32
1912 2095 3.523157 TCTCACCCATGCTTAGATCCAAA 59.477 43.478 0.00 0.00 0.00 3.28
1913 2096 3.114606 TCTCACCCATGCTTAGATCCAA 58.885 45.455 0.00 0.00 0.00 3.53
1914 2097 2.435805 GTCTCACCCATGCTTAGATCCA 59.564 50.000 0.00 0.00 0.00 3.41
1915 2098 2.703007 AGTCTCACCCATGCTTAGATCC 59.297 50.000 0.00 0.00 0.00 3.36
1916 2099 5.163405 TGTTAGTCTCACCCATGCTTAGATC 60.163 44.000 0.00 0.00 0.00 2.75
1917 2100 4.716784 TGTTAGTCTCACCCATGCTTAGAT 59.283 41.667 0.00 0.00 0.00 1.98
1918 2101 4.093743 TGTTAGTCTCACCCATGCTTAGA 58.906 43.478 0.00 0.00 0.00 2.10
1919 2102 4.471904 TGTTAGTCTCACCCATGCTTAG 57.528 45.455 0.00 0.00 0.00 2.18
1920 2103 4.286032 ACTTGTTAGTCTCACCCATGCTTA 59.714 41.667 0.00 0.00 0.00 3.09
1921 2104 3.073062 ACTTGTTAGTCTCACCCATGCTT 59.927 43.478 0.00 0.00 0.00 3.91
1922 2105 2.639839 ACTTGTTAGTCTCACCCATGCT 59.360 45.455 0.00 0.00 0.00 3.79
1923 2106 3.059352 ACTTGTTAGTCTCACCCATGC 57.941 47.619 0.00 0.00 0.00 4.06
1924 2107 6.710744 ACTAAAACTTGTTAGTCTCACCCATG 59.289 38.462 0.00 0.00 39.60 3.66
1925 2108 6.838382 ACTAAAACTTGTTAGTCTCACCCAT 58.162 36.000 0.00 0.00 39.60 4.00
1926 2109 6.243216 ACTAAAACTTGTTAGTCTCACCCA 57.757 37.500 0.00 0.00 39.60 4.51
1946 2129 9.462606 TCATGATGACTAAAAGTAGTGAGACTA 57.537 33.333 0.00 0.00 40.82 2.59
1947 2130 8.354711 TCATGATGACTAAAAGTAGTGAGACT 57.645 34.615 0.00 0.00 40.82 3.24
1948 2131 8.462811 TCTCATGATGACTAAAAGTAGTGAGAC 58.537 37.037 0.00 0.00 40.82 3.36
1949 2132 8.462811 GTCTCATGATGACTAAAAGTAGTGAGA 58.537 37.037 14.41 0.00 40.82 3.27
1950 2133 8.465999 AGTCTCATGATGACTAAAAGTAGTGAG 58.534 37.037 19.80 0.00 42.28 3.51
1951 2134 8.354711 AGTCTCATGATGACTAAAAGTAGTGA 57.645 34.615 19.80 0.00 42.28 3.41
1961 2144 8.899771 TGATACGTTTTAGTCTCATGATGACTA 58.100 33.333 21.34 21.34 43.58 2.59
1962 2145 7.772166 TGATACGTTTTAGTCTCATGATGACT 58.228 34.615 22.78 22.78 45.48 3.41
1963 2146 7.987268 TGATACGTTTTAGTCTCATGATGAC 57.013 36.000 14.04 14.04 34.88 3.06
1964 2147 7.222805 GCTTGATACGTTTTAGTCTCATGATGA 59.777 37.037 0.00 0.00 29.77 2.92
1965 2148 7.010460 TGCTTGATACGTTTTAGTCTCATGATG 59.990 37.037 0.00 0.00 29.77 3.07
1966 2149 7.010552 GTGCTTGATACGTTTTAGTCTCATGAT 59.989 37.037 0.00 0.00 29.77 2.45
1967 2150 6.310467 GTGCTTGATACGTTTTAGTCTCATGA 59.690 38.462 0.00 0.00 29.77 3.07
1968 2151 6.455646 GGTGCTTGATACGTTTTAGTCTCATG 60.456 42.308 0.00 0.00 29.40 3.07
1969 2152 5.581085 GGTGCTTGATACGTTTTAGTCTCAT 59.419 40.000 0.00 0.00 29.40 2.90
1970 2153 4.927425 GGTGCTTGATACGTTTTAGTCTCA 59.073 41.667 0.00 0.00 0.00 3.27
1971 2154 5.169295 AGGTGCTTGATACGTTTTAGTCTC 58.831 41.667 0.00 0.00 0.00 3.36
1972 2155 5.047235 AGAGGTGCTTGATACGTTTTAGTCT 60.047 40.000 0.00 0.00 0.00 3.24
1973 2156 5.169295 AGAGGTGCTTGATACGTTTTAGTC 58.831 41.667 0.00 0.00 0.00 2.59
1974 2157 5.148651 AGAGGTGCTTGATACGTTTTAGT 57.851 39.130 0.00 0.00 0.00 2.24
1975 2158 5.168569 TGAGAGGTGCTTGATACGTTTTAG 58.831 41.667 0.00 0.00 0.00 1.85
1976 2159 5.142061 TGAGAGGTGCTTGATACGTTTTA 57.858 39.130 0.00 0.00 0.00 1.52
1977 2160 3.997021 CTGAGAGGTGCTTGATACGTTTT 59.003 43.478 0.00 0.00 0.00 2.43
1978 2161 3.006967 ACTGAGAGGTGCTTGATACGTTT 59.993 43.478 0.00 0.00 0.00 3.60
1979 2162 2.563179 ACTGAGAGGTGCTTGATACGTT 59.437 45.455 0.00 0.00 0.00 3.99
1980 2163 2.164624 GACTGAGAGGTGCTTGATACGT 59.835 50.000 0.00 0.00 0.00 3.57
1981 2164 2.164422 TGACTGAGAGGTGCTTGATACG 59.836 50.000 0.00 0.00 0.00 3.06
1982 2165 3.194542 AGTGACTGAGAGGTGCTTGATAC 59.805 47.826 0.00 0.00 0.00 2.24
1983 2166 3.435275 AGTGACTGAGAGGTGCTTGATA 58.565 45.455 0.00 0.00 0.00 2.15
1984 2167 2.255406 AGTGACTGAGAGGTGCTTGAT 58.745 47.619 0.00 0.00 0.00 2.57
1985 2168 1.709578 AGTGACTGAGAGGTGCTTGA 58.290 50.000 0.00 0.00 0.00 3.02
1986 2169 2.540265 AAGTGACTGAGAGGTGCTTG 57.460 50.000 0.00 0.00 0.00 4.01
1987 2170 2.703007 AGAAAGTGACTGAGAGGTGCTT 59.297 45.455 0.00 0.00 0.00 3.91
1988 2171 2.298729 GAGAAAGTGACTGAGAGGTGCT 59.701 50.000 0.00 0.00 0.00 4.40
1989 2172 2.298729 AGAGAAAGTGACTGAGAGGTGC 59.701 50.000 0.00 0.00 0.00 5.01
1990 2173 3.056891 GGAGAGAAAGTGACTGAGAGGTG 60.057 52.174 0.00 0.00 0.00 4.00
1991 2174 3.161866 GGAGAGAAAGTGACTGAGAGGT 58.838 50.000 0.00 0.00 0.00 3.85
1992 2175 2.495669 GGGAGAGAAAGTGACTGAGAGG 59.504 54.545 0.00 0.00 0.00 3.69
1993 2176 3.430453 AGGGAGAGAAAGTGACTGAGAG 58.570 50.000 0.00 0.00 0.00 3.20
1994 2177 3.426615 GAGGGAGAGAAAGTGACTGAGA 58.573 50.000 0.00 0.00 0.00 3.27
1995 2178 2.495669 GGAGGGAGAGAAAGTGACTGAG 59.504 54.545 0.00 0.00 0.00 3.35
1996 2179 2.530701 GGAGGGAGAGAAAGTGACTGA 58.469 52.381 0.00 0.00 0.00 3.41
1999 2182 1.828595 GAGGGAGGGAGAGAAAGTGAC 59.171 57.143 0.00 0.00 0.00 3.67
2228 2422 0.421495 TCAGGATCTTGGAGGGGGAA 59.579 55.000 4.83 0.00 0.00 3.97
2691 2885 1.586422 CCACATGATTAGTCGCCAGG 58.414 55.000 0.00 0.00 0.00 4.45
2711 2905 4.004982 ACAATTGGAGCCAATGAAAATGC 58.995 39.130 15.02 0.00 44.86 3.56
2974 3168 1.905894 TCTCCACCACATCCGAAATCA 59.094 47.619 0.00 0.00 0.00 2.57
3075 3282 8.094798 TGTTTAGTTGTATTGATGTCAGAACC 57.905 34.615 0.00 0.00 0.00 3.62
3274 3489 6.959361 TCAAGCTGAAACTTATGTTCAGTTC 58.041 36.000 13.91 1.25 35.63 3.01
3319 3534 2.158943 CGGGGTCATCCTCCTTTTCTAC 60.159 54.545 0.00 0.00 35.33 2.59
3560 3778 1.300697 GCGTCAGACCGGTTTGAGT 60.301 57.895 26.87 0.00 0.00 3.41
3688 3906 3.003113 GCTCGCGTAGGTGGAGGTT 62.003 63.158 5.77 0.00 0.00 3.50
3715 3933 4.467084 GCGTCAATGGCGGAGGGA 62.467 66.667 9.92 0.00 0.00 4.20
3910 4129 1.215673 TGCCCTAACTTTGTTGGGTGA 59.784 47.619 10.99 0.00 41.59 4.02
3912 4131 2.694616 ATGCCCTAACTTTGTTGGGT 57.305 45.000 10.99 0.00 41.59 4.51
3930 4149 1.833049 CTAGGTCTCCCGGGCGAAT 60.833 63.158 16.43 9.75 35.12 3.34
3954 4173 2.461695 GACTGATCTCCTCACTTCCCA 58.538 52.381 0.00 0.00 0.00 4.37
4209 4429 0.251916 GATCCGGTGGTCATTGGTGA 59.748 55.000 0.00 0.00 0.00 4.02
4211 4431 1.607612 GGATCCGGTGGTCATTGGT 59.392 57.895 0.00 0.00 0.00 3.67
4786 5007 8.522830 GTTTATCACCAAAAGAGATCATGGAAA 58.477 33.333 0.00 0.00 36.75 3.13
4997 5218 4.722193 CCTGTAGTTGGCACCCAG 57.278 61.111 0.00 0.00 33.81 4.45
5283 5504 8.484641 TTCTTCTAAATGCTAACATGAGACAG 57.515 34.615 0.00 0.00 36.36 3.51
5392 5615 1.212935 GATCTTGAAAGGCTGGCCCTA 59.787 52.381 8.11 0.00 45.62 3.53
5627 5850 3.364964 CCTGGTACACAAAACAGATTCGC 60.365 47.826 0.00 0.00 32.86 4.70
5697 5920 7.717436 TCAAAGTTACATCACTAACCATTCACA 59.283 33.333 0.00 0.00 0.00 3.58
5842 6066 8.656849 GTGTGGTATAACACTCACAATCTAAAG 58.343 37.037 21.18 0.00 45.69 1.85
5976 6200 0.639392 AGGGGAGTGGATCTACAGCT 59.361 55.000 12.16 0.00 0.00 4.24
6750 6977 2.315925 TAGCTCCAGGAAATTGCTCG 57.684 50.000 4.20 0.00 35.47 5.03
6854 7081 4.219070 ACAAATCATAAAGCAGAAGCAGCA 59.781 37.500 0.00 0.00 45.49 4.41
6877 7105 9.155975 GACAGTTTCTCTGAAGCTAAAATGATA 57.844 33.333 10.76 0.00 46.27 2.15
6940 7168 4.002906 TGGAACTGCATATCCGATAACC 57.997 45.455 11.95 0.00 38.63 2.85
7503 7731 8.174733 ACATAGTAGCCGTTATTACATACAGT 57.825 34.615 0.00 0.00 0.00 3.55
7522 7750 3.185455 AGAAAGGCAGAGGGAACATAGT 58.815 45.455 0.00 0.00 0.00 2.12
7538 7766 3.390135 TCTACGTGGACAGCAAAGAAAG 58.610 45.455 0.00 0.00 0.00 2.62
7539 7767 3.462483 TCTACGTGGACAGCAAAGAAA 57.538 42.857 0.00 0.00 0.00 2.52
7540 7768 3.128349 GTTCTACGTGGACAGCAAAGAA 58.872 45.455 0.00 0.00 0.00 2.52
7541 7769 2.364324 AGTTCTACGTGGACAGCAAAGA 59.636 45.455 0.00 0.00 0.00 2.52
7697 7929 2.222027 AGAAAAGAAAGGGTGAGCACG 58.778 47.619 0.00 0.00 0.00 5.34
7700 7932 4.097892 TGAACAAGAAAAGAAAGGGTGAGC 59.902 41.667 0.00 0.00 0.00 4.26
8067 8300 7.489757 CCACTTTTCCTTTGAACAAAACGATTA 59.510 33.333 0.00 0.00 0.00 1.75
8283 8516 9.829507 ATATTCCAGTTCTTAAGATCACTCTTG 57.170 33.333 14.47 5.01 41.83 3.02
8356 8589 2.564062 CCAAATCATGGTTCTGGCAGTT 59.436 45.455 15.27 0.00 44.85 3.16
8373 8606 9.402320 TGAAATCCATAAGATATCGAAACCAAA 57.598 29.630 0.00 0.00 33.66 3.28
8625 8862 6.601613 AGATCACTACCAAAAACAACTCACAA 59.398 34.615 0.00 0.00 0.00 3.33
8704 8941 6.331042 TGATGAAATATCCATCTGTCTCCCTT 59.669 38.462 15.05 0.00 40.65 3.95
8722 8959 6.700960 CAGTTACAATGCCACTTTTGATGAAA 59.299 34.615 0.00 0.00 0.00 2.69
8935 9173 6.907741 AGAAGAGTGCTAAAAATCTCAAAGC 58.092 36.000 0.00 0.00 0.00 3.51
9024 9263 2.182827 TCCAGACTGATGCAAGTAGCT 58.817 47.619 3.32 0.00 45.94 3.32
9086 9325 2.662309 CCTTGCATGGCACTCCTTT 58.338 52.632 5.58 0.00 38.71 3.11
9289 9530 9.649316 CCCTTTGGGTCTTTTTATATTGGTATA 57.351 33.333 0.00 0.00 38.25 1.47
9290 9531 8.547481 CCCTTTGGGTCTTTTTATATTGGTAT 57.453 34.615 0.00 0.00 38.25 2.73
9291 9532 7.964666 CCCTTTGGGTCTTTTTATATTGGTA 57.035 36.000 0.00 0.00 38.25 3.25
9292 9533 6.867519 CCCTTTGGGTCTTTTTATATTGGT 57.132 37.500 0.00 0.00 38.25 3.67
9307 9548 6.206180 ATCAATTAGATCTACCCCTTTGGG 57.794 41.667 0.67 0.00 45.90 4.12
9320 9561 4.897509 TGATGGCCGAGATCAATTAGAT 57.102 40.909 0.00 0.00 40.48 1.98
9321 9562 4.687901 TTGATGGCCGAGATCAATTAGA 57.312 40.909 11.86 0.00 35.38 2.10
9322 9563 4.818546 AGTTTGATGGCCGAGATCAATTAG 59.181 41.667 15.57 0.00 39.11 1.73
9323 9564 4.780815 AGTTTGATGGCCGAGATCAATTA 58.219 39.130 15.57 2.12 39.11 1.40
9324 9565 3.624777 AGTTTGATGGCCGAGATCAATT 58.375 40.909 15.57 6.83 39.11 2.32
9325 9566 3.287867 AGTTTGATGGCCGAGATCAAT 57.712 42.857 15.57 2.12 39.11 2.57
9326 9567 2.787473 AGTTTGATGGCCGAGATCAA 57.213 45.000 11.86 11.86 37.91 2.57
9327 9568 3.197766 ACTTAGTTTGATGGCCGAGATCA 59.802 43.478 0.00 0.00 0.00 2.92
9328 9569 3.798202 ACTTAGTTTGATGGCCGAGATC 58.202 45.455 0.00 0.00 0.00 2.75
9329 9570 3.914426 ACTTAGTTTGATGGCCGAGAT 57.086 42.857 0.00 0.00 0.00 2.75
9330 9571 3.695830 AACTTAGTTTGATGGCCGAGA 57.304 42.857 0.00 0.00 0.00 4.04
9331 9572 6.093495 TGAATTAACTTAGTTTGATGGCCGAG 59.907 38.462 1.94 0.00 0.00 4.63
9332 9573 5.941058 TGAATTAACTTAGTTTGATGGCCGA 59.059 36.000 1.94 0.00 0.00 5.54
9333 9574 6.189677 TGAATTAACTTAGTTTGATGGCCG 57.810 37.500 1.94 0.00 0.00 6.13
9334 9575 7.812309 GTTGAATTAACTTAGTTTGATGGCC 57.188 36.000 1.94 0.00 36.34 5.36
9348 9589 7.817962 TGAAGCAGTCTAGGTAGTTGAATTAAC 59.182 37.037 0.00 0.00 39.65 2.01
9349 9590 7.903145 TGAAGCAGTCTAGGTAGTTGAATTAA 58.097 34.615 0.00 0.00 0.00 1.40
9350 9591 7.476540 TGAAGCAGTCTAGGTAGTTGAATTA 57.523 36.000 0.00 0.00 0.00 1.40
9351 9592 6.360370 TGAAGCAGTCTAGGTAGTTGAATT 57.640 37.500 0.00 0.00 0.00 2.17
9352 9593 6.360370 TTGAAGCAGTCTAGGTAGTTGAAT 57.640 37.500 0.00 0.00 0.00 2.57
9353 9594 5.801531 TTGAAGCAGTCTAGGTAGTTGAA 57.198 39.130 0.00 0.00 0.00 2.69
9354 9595 5.337571 CCATTGAAGCAGTCTAGGTAGTTGA 60.338 44.000 0.00 0.00 0.00 3.18
9355 9596 4.872691 CCATTGAAGCAGTCTAGGTAGTTG 59.127 45.833 0.00 0.00 0.00 3.16
9356 9597 4.624125 GCCATTGAAGCAGTCTAGGTAGTT 60.624 45.833 0.00 0.00 0.00 2.24
9357 9598 3.118592 GCCATTGAAGCAGTCTAGGTAGT 60.119 47.826 0.00 0.00 0.00 2.73
9358 9599 3.462021 GCCATTGAAGCAGTCTAGGTAG 58.538 50.000 0.00 0.00 0.00 3.18
9359 9600 2.159099 CGCCATTGAAGCAGTCTAGGTA 60.159 50.000 0.00 0.00 0.00 3.08
9360 9601 1.406069 CGCCATTGAAGCAGTCTAGGT 60.406 52.381 0.00 0.00 0.00 3.08
9361 9602 1.134699 TCGCCATTGAAGCAGTCTAGG 60.135 52.381 0.00 0.00 0.00 3.02
9362 9603 2.200067 CTCGCCATTGAAGCAGTCTAG 58.800 52.381 0.00 0.00 0.00 2.43
9363 9604 1.740380 GCTCGCCATTGAAGCAGTCTA 60.740 52.381 0.00 0.00 0.00 2.59
9364 9605 1.023513 GCTCGCCATTGAAGCAGTCT 61.024 55.000 0.00 0.00 0.00 3.24
9365 9606 1.427020 GCTCGCCATTGAAGCAGTC 59.573 57.895 0.00 0.00 0.00 3.51
9366 9607 2.393768 CGCTCGCCATTGAAGCAGT 61.394 57.895 0.00 0.00 0.00 4.40
9367 9608 1.915614 AACGCTCGCCATTGAAGCAG 61.916 55.000 0.00 0.00 0.00 4.24
9368 9609 0.672091 TAACGCTCGCCATTGAAGCA 60.672 50.000 0.00 0.00 0.00 3.91
9369 9610 0.446222 TTAACGCTCGCCATTGAAGC 59.554 50.000 0.00 0.00 0.00 3.86
9370 9611 2.095969 TGTTTAACGCTCGCCATTGAAG 60.096 45.455 0.00 0.00 0.00 3.02
9371 9612 1.874231 TGTTTAACGCTCGCCATTGAA 59.126 42.857 0.00 0.00 0.00 2.69
9372 9613 1.514003 TGTTTAACGCTCGCCATTGA 58.486 45.000 0.00 0.00 0.00 2.57
9373 9614 2.176369 CATGTTTAACGCTCGCCATTG 58.824 47.619 0.00 0.00 0.00 2.82
9374 9615 1.810151 ACATGTTTAACGCTCGCCATT 59.190 42.857 0.00 0.00 0.00 3.16
9375 9616 1.448985 ACATGTTTAACGCTCGCCAT 58.551 45.000 0.00 0.00 0.00 4.40
9376 9617 1.231221 AACATGTTTAACGCTCGCCA 58.769 45.000 4.92 0.00 0.00 5.69
9377 9618 2.325509 AAACATGTTTAACGCTCGCC 57.674 45.000 22.10 0.00 0.00 5.54
9388 9629 9.847706 TGATATTAATTGCACGTTAAACATGTT 57.152 25.926 4.92 4.92 0.00 2.71
9392 9633 9.938670 GGTATGATATTAATTGCACGTTAAACA 57.061 29.630 7.36 8.38 0.00 2.83
9393 9634 9.938670 TGGTATGATATTAATTGCACGTTAAAC 57.061 29.630 7.36 1.88 0.00 2.01
9423 9664 9.394767 TGTGTGTTAATCTATGATTAGTGCAAT 57.605 29.630 0.00 0.00 0.00 3.56
9424 9665 8.785329 TGTGTGTTAATCTATGATTAGTGCAA 57.215 30.769 0.00 0.00 0.00 4.08
9425 9666 8.785329 TTGTGTGTTAATCTATGATTAGTGCA 57.215 30.769 0.00 0.00 0.00 4.57
9453 9694 9.884636 TTGCATGCGAATATTAGGTATACTATT 57.115 29.630 14.09 0.00 0.00 1.73
9455 9696 9.884636 AATTGCATGCGAATATTAGGTATACTA 57.115 29.630 12.68 0.00 0.00 1.82
9456 9697 8.792830 AATTGCATGCGAATATTAGGTATACT 57.207 30.769 12.68 0.00 0.00 2.12
9486 9727 9.163899 TGCAACACACGTTAATATTTAGGAATA 57.836 29.630 0.00 0.00 32.75 1.75
9487 9728 8.046294 TGCAACACACGTTAATATTTAGGAAT 57.954 30.769 0.00 0.00 32.75 3.01
9488 9729 7.436430 TGCAACACACGTTAATATTTAGGAA 57.564 32.000 0.00 0.00 32.75 3.36
9489 9730 7.119992 ACATGCAACACACGTTAATATTTAGGA 59.880 33.333 0.00 0.00 32.75 2.94
9490 9731 7.218014 CACATGCAACACACGTTAATATTTAGG 59.782 37.037 0.00 0.00 32.75 2.69
9491 9732 7.253288 GCACATGCAACACACGTTAATATTTAG 60.253 37.037 0.00 0.00 41.59 1.85
9492 9733 6.524933 GCACATGCAACACACGTTAATATTTA 59.475 34.615 0.00 0.00 41.59 1.40
9493 9734 5.344665 GCACATGCAACACACGTTAATATTT 59.655 36.000 0.00 0.00 41.59 1.40
9494 9735 4.856487 GCACATGCAACACACGTTAATATT 59.144 37.500 0.00 0.00 41.59 1.28
9495 9736 4.411327 GCACATGCAACACACGTTAATAT 58.589 39.130 0.00 0.00 41.59 1.28
9496 9737 3.665585 CGCACATGCAACACACGTTAATA 60.666 43.478 4.49 0.00 42.21 0.98
9497 9738 2.660490 GCACATGCAACACACGTTAAT 58.340 42.857 0.00 0.00 41.59 1.40
9498 9739 1.595732 CGCACATGCAACACACGTTAA 60.596 47.619 4.49 0.00 42.21 2.01
9499 9740 0.041751 CGCACATGCAACACACGTTA 60.042 50.000 4.49 0.00 42.21 3.18
9500 9741 1.298264 CGCACATGCAACACACGTT 60.298 52.632 4.49 0.00 42.21 3.99
9501 9742 1.154814 TACGCACATGCAACACACGT 61.155 50.000 4.49 9.52 42.21 4.49
9502 9743 0.165727 ATACGCACATGCAACACACG 59.834 50.000 4.49 0.00 42.21 4.49
9503 9744 2.330231 AATACGCACATGCAACACAC 57.670 45.000 4.49 0.00 42.21 3.82
9504 9745 3.500299 AGTAAATACGCACATGCAACACA 59.500 39.130 4.49 0.00 42.21 3.72
9505 9746 4.078363 AGTAAATACGCACATGCAACAC 57.922 40.909 4.49 0.00 42.21 3.32
9506 9747 4.932799 ACTAGTAAATACGCACATGCAACA 59.067 37.500 4.49 0.00 42.21 3.33
9507 9748 5.464965 ACTAGTAAATACGCACATGCAAC 57.535 39.130 4.49 0.00 42.21 4.17
9508 9749 6.100668 TGTACTAGTAAATACGCACATGCAA 58.899 36.000 3.61 0.00 42.21 4.08
9509 9750 5.652518 TGTACTAGTAAATACGCACATGCA 58.347 37.500 3.61 0.00 42.21 3.96
9510 9751 6.764877 ATGTACTAGTAAATACGCACATGC 57.235 37.500 3.61 0.00 37.78 4.06
9515 9756 9.263538 CCCATTTTATGTACTAGTAAATACGCA 57.736 33.333 11.68 2.14 0.00 5.24
9516 9757 8.225777 GCCCATTTTATGTACTAGTAAATACGC 58.774 37.037 11.68 7.28 0.00 4.42
9517 9758 8.715088 GGCCCATTTTATGTACTAGTAAATACG 58.285 37.037 11.68 2.78 0.00 3.06
9518 9759 8.715088 CGGCCCATTTTATGTACTAGTAAATAC 58.285 37.037 11.68 0.00 0.00 1.89
9519 9760 8.649591 TCGGCCCATTTTATGTACTAGTAAATA 58.350 33.333 8.49 8.49 0.00 1.40
9520 9761 7.511268 TCGGCCCATTTTATGTACTAGTAAAT 58.489 34.615 10.47 10.47 0.00 1.40
9521 9762 6.887013 TCGGCCCATTTTATGTACTAGTAAA 58.113 36.000 3.61 0.00 0.00 2.01
9522 9763 6.482898 TCGGCCCATTTTATGTACTAGTAA 57.517 37.500 3.61 0.00 0.00 2.24
9523 9764 6.482898 TTCGGCCCATTTTATGTACTAGTA 57.517 37.500 0.00 0.00 0.00 1.82
9524 9765 5.362105 TTCGGCCCATTTTATGTACTAGT 57.638 39.130 0.00 0.00 0.00 2.57
9525 9766 5.277828 GCTTTCGGCCCATTTTATGTACTAG 60.278 44.000 0.00 0.00 34.27 2.57
9526 9767 4.577283 GCTTTCGGCCCATTTTATGTACTA 59.423 41.667 0.00 0.00 34.27 1.82
9527 9768 3.380320 GCTTTCGGCCCATTTTATGTACT 59.620 43.478 0.00 0.00 34.27 2.73
9528 9769 3.702330 GCTTTCGGCCCATTTTATGTAC 58.298 45.455 0.00 0.00 34.27 2.90
9530 9771 2.959507 GCTTTCGGCCCATTTTATGT 57.040 45.000 0.00 0.00 34.27 2.29
9557 9798 6.570571 CGTTCGATACCTGATCCTACAATCAT 60.571 42.308 0.00 0.00 35.21 2.45
9558 9799 5.278315 CGTTCGATACCTGATCCTACAATCA 60.278 44.000 0.00 0.00 34.55 2.57
9559 9800 5.154932 CGTTCGATACCTGATCCTACAATC 58.845 45.833 0.00 0.00 0.00 2.67
9560 9801 4.022242 CCGTTCGATACCTGATCCTACAAT 60.022 45.833 0.00 0.00 0.00 2.71
9561 9802 3.317149 CCGTTCGATACCTGATCCTACAA 59.683 47.826 0.00 0.00 0.00 2.41
9562 9803 2.882761 CCGTTCGATACCTGATCCTACA 59.117 50.000 0.00 0.00 0.00 2.74
9563 9804 2.228343 CCCGTTCGATACCTGATCCTAC 59.772 54.545 0.00 0.00 0.00 3.18
9564 9805 2.511659 CCCGTTCGATACCTGATCCTA 58.488 52.381 0.00 0.00 0.00 2.94
9565 9806 1.329256 CCCGTTCGATACCTGATCCT 58.671 55.000 0.00 0.00 0.00 3.24
9566 9807 0.317479 CCCCGTTCGATACCTGATCC 59.683 60.000 0.00 0.00 0.00 3.36
9567 9808 1.038280 ACCCCGTTCGATACCTGATC 58.962 55.000 0.00 0.00 0.00 2.92
9568 9809 0.750850 CACCCCGTTCGATACCTGAT 59.249 55.000 0.00 0.00 0.00 2.90
9569 9810 0.612732 ACACCCCGTTCGATACCTGA 60.613 55.000 0.00 0.00 0.00 3.86
9570 9811 0.179119 GACACCCCGTTCGATACCTG 60.179 60.000 0.00 0.00 0.00 4.00
9571 9812 1.660560 CGACACCCCGTTCGATACCT 61.661 60.000 0.00 0.00 0.00 3.08
9572 9813 1.226773 CGACACCCCGTTCGATACC 60.227 63.158 0.00 0.00 0.00 2.73
9573 9814 0.799534 CACGACACCCCGTTCGATAC 60.800 60.000 0.00 0.00 41.29 2.24
9574 9815 0.959867 TCACGACACCCCGTTCGATA 60.960 55.000 0.00 0.00 41.29 2.92
9575 9816 1.601419 ATCACGACACCCCGTTCGAT 61.601 55.000 0.00 0.00 41.29 3.59
9576 9817 1.808531 AATCACGACACCCCGTTCGA 61.809 55.000 0.00 0.00 41.29 3.71
9577 9818 1.373748 AATCACGACACCCCGTTCG 60.374 57.895 0.00 0.00 41.29 3.95
9578 9819 0.601841 ACAATCACGACACCCCGTTC 60.602 55.000 0.00 0.00 41.29 3.95
9579 9820 0.680618 TACAATCACGACACCCCGTT 59.319 50.000 0.00 0.00 41.29 4.44
9580 9821 0.245539 CTACAATCACGACACCCCGT 59.754 55.000 0.00 0.00 44.43 5.28
9581 9822 0.459585 CCTACAATCACGACACCCCG 60.460 60.000 0.00 0.00 0.00 5.73
9582 9823 0.899720 TCCTACAATCACGACACCCC 59.100 55.000 0.00 0.00 0.00 4.95
9583 9824 2.167693 TGATCCTACAATCACGACACCC 59.832 50.000 0.00 0.00 30.76 4.61
9584 9825 3.448686 CTGATCCTACAATCACGACACC 58.551 50.000 0.00 0.00 32.36 4.16
9585 9826 3.119101 ACCTGATCCTACAATCACGACAC 60.119 47.826 0.00 0.00 32.36 3.67
9586 9827 3.096852 ACCTGATCCTACAATCACGACA 58.903 45.455 0.00 0.00 32.36 4.35
9587 9828 3.802948 ACCTGATCCTACAATCACGAC 57.197 47.619 0.00 0.00 32.36 4.34
9588 9829 4.215613 CGATACCTGATCCTACAATCACGA 59.784 45.833 0.00 0.00 32.36 4.35
9589 9830 4.215613 TCGATACCTGATCCTACAATCACG 59.784 45.833 0.00 0.00 32.36 4.35
9674 9915 6.045106 AGTTTAATCTTGACCCCTCTAACCAA 59.955 38.462 0.00 0.00 0.00 3.67
9680 9921 5.094387 TCTCAGTTTAATCTTGACCCCTCT 58.906 41.667 0.00 0.00 0.00 3.69
9736 9977 2.886523 TGGGCAATGTCTCAAAGACTTG 59.113 45.455 8.44 10.32 45.27 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.