Multiple sequence alignment - TraesCS7A01G286300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G286300 chr7A 100.000 5875 0 0 1 5875 334470829 334464955 0.000000e+00 10850.0
1 TraesCS7A01G286300 chr7A 97.546 163 4 0 5713 5875 225630718 225630556 4.480000e-71 279.0
2 TraesCS7A01G286300 chr7A 95.376 173 7 1 5704 5875 440286703 440286875 2.090000e-69 274.0
3 TraesCS7A01G286300 chr7A 93.529 170 10 1 3615 3784 334467044 334466876 9.770000e-63 252.0
4 TraesCS7A01G286300 chr7A 93.529 170 10 1 3786 3954 334467215 334467046 9.770000e-63 252.0
5 TraesCS7A01G286300 chr7A 97.500 120 3 0 5286 5405 334465425 334465306 7.720000e-49 206.0
6 TraesCS7A01G286300 chr7A 97.500 120 3 0 5405 5524 334465544 334465425 7.720000e-49 206.0
7 TraesCS7A01G286300 chr7A 90.625 96 8 1 4994 5088 334465795 334465700 6.180000e-25 126.0
8 TraesCS7A01G286300 chr7A 90.625 96 8 1 5035 5130 334465836 334465742 6.180000e-25 126.0
9 TraesCS7A01G286300 chr7B 95.918 5120 136 23 1 5084 282769882 282774964 0.000000e+00 8229.0
10 TraesCS7A01G286300 chr7B 85.101 396 27 11 5035 5399 282774874 282775268 5.560000e-100 375.0
11 TraesCS7A01G286300 chr7B 93.567 171 9 2 3615 3784 282773675 282773844 2.720000e-63 254.0
12 TraesCS7A01G286300 chr7B 93.529 170 9 2 3786 3954 282773506 282773674 9.770000e-63 252.0
13 TraesCS7A01G286300 chr7B 93.636 110 7 0 5409 5518 282775159 282775268 1.310000e-36 165.0
14 TraesCS7A01G286300 chr7B 91.304 115 10 0 5607 5721 282775368 282775482 2.190000e-34 158.0
15 TraesCS7A01G286300 chr7D 97.685 3629 61 8 1524 5134 310335241 310331618 0.000000e+00 6215.0
16 TraesCS7A01G286300 chr7D 92.536 1514 57 18 1 1483 310336725 310335237 0.000000e+00 2119.0
17 TraesCS7A01G286300 chr7D 92.638 163 8 2 5220 5378 310323649 310323487 1.270000e-56 231.0
18 TraesCS7A01G286300 chr7D 87.192 203 14 1 5405 5607 310323579 310323389 2.760000e-53 220.0
19 TraesCS7A01G286300 chr7D 90.000 100 7 3 4990 5088 310331719 310331622 6.180000e-25 126.0
20 TraesCS7A01G286300 chr5B 85.217 345 36 12 3786 4120 417880521 417880182 2.030000e-89 340.0
21 TraesCS7A01G286300 chr5B 85.388 219 27 3 4131 4348 417879053 417878839 7.660000e-54 222.0
22 TraesCS7A01G286300 chr5B 88.079 151 13 4 4699 4848 417877198 417877052 2.180000e-39 174.0
23 TraesCS7A01G286300 chr5B 76.786 168 20 12 459 610 602068976 602069140 6.310000e-10 76.8
24 TraesCS7A01G286300 chr1A 98.160 163 3 0 5713 5875 340902751 340902589 9.640000e-73 285.0
25 TraesCS7A01G286300 chr5A 96.988 166 5 0 5710 5875 576906532 576906367 4.480000e-71 279.0
26 TraesCS7A01G286300 chr5A 96.450 169 5 1 5707 5875 485049540 485049373 1.610000e-70 278.0
27 TraesCS7A01G286300 chr5A 85.837 233 29 3 4405 4636 454723939 454723710 1.640000e-60 244.0
28 TraesCS7A01G286300 chr1B 96.988 166 5 0 5710 5875 123229213 123229048 4.480000e-71 279.0
29 TraesCS7A01G286300 chr1B 98.693 153 2 0 5723 5875 355891336 355891184 7.500000e-69 272.0
30 TraesCS7A01G286300 chr4A 96.951 164 5 0 5712 5875 109688620 109688457 5.800000e-70 276.0
31 TraesCS7A01G286300 chr6A 94.857 175 6 2 5701 5875 532870211 532870040 2.700000e-68 270.0
32 TraesCS7A01G286300 chr5D 78.519 135 15 9 487 610 488818147 488818278 6.310000e-10 76.8
33 TraesCS7A01G286300 chr6B 100.000 31 0 0 5439 5469 497435064 497435094 2.290000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G286300 chr7A 334464955 334470829 5874 True 10850.000000 10850 100.000000 1 5875 1 chr7A.!!$R2 5874
1 TraesCS7A01G286300 chr7B 282769882 282775482 5600 False 1572.166667 8229 92.175833 1 5721 6 chr7B.!!$F1 5720
2 TraesCS7A01G286300 chr7D 310331618 310336725 5107 True 2820.000000 6215 93.407000 1 5134 3 chr7D.!!$R2 5133
3 TraesCS7A01G286300 chr5B 417877052 417880521 3469 True 245.333333 340 86.228000 3786 4848 3 chr5B.!!$R1 1062

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
673 708 0.606401 CTGGTGTCCGGTTGCTGATT 60.606 55.000 0.00 0.0 0.00 2.57 F
679 714 1.606668 GTCCGGTTGCTGATTCAAACA 59.393 47.619 0.00 0.0 33.41 2.83 F
1488 1531 1.933765 ACTCCAGGTCCTGATCCTACT 59.066 52.381 21.23 0.0 32.44 2.57 F
2761 2818 2.154462 CCCAAAGACAAGCTCGTGATT 58.846 47.619 0.00 0.0 0.00 2.57 F
2830 2887 2.031258 TGGCGGAGATTGCGATTTTA 57.969 45.000 0.00 0.0 30.86 1.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1488 1531 0.482446 AGAATGGGGTTGGCAGTTGA 59.518 50.000 0.00 0.00 0.00 3.18 R
2541 2598 1.304134 GGAGGGGGAAACACGCATT 60.304 57.895 0.00 0.00 0.00 3.56 R
2830 2887 3.327757 TCTGACTAGCCTTTTGGTGTGAT 59.672 43.478 0.00 0.00 42.99 3.06 R
4574 7214 0.875059 GCTGGTACCAGTCTTGTTGC 59.125 55.000 36.31 20.75 45.24 4.17 R
4895 7535 5.723405 TGATCAGTCCCAGGATAAGGATATG 59.277 44.000 0.00 0.00 33.88 1.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 1.729472 CGAGTTCTTGACATCGCTCGT 60.729 52.381 0.00 0.00 40.31 4.18
104 109 2.076100 CATTTTCACAGTAGCGCCTGA 58.924 47.619 18.81 3.29 36.30 3.86
123 128 1.224592 CGGAGGTGCAGGCCTTATT 59.775 57.895 0.00 0.00 39.34 1.40
179 184 2.203938 GGGTGGTGGTGGAGGAGA 60.204 66.667 0.00 0.00 0.00 3.71
207 212 2.575455 GAAGAGGAGGAGGAGCCGGA 62.575 65.000 5.05 0.00 43.43 5.14
209 214 4.824515 AGGAGGAGGAGCCGGACG 62.825 72.222 5.05 0.00 43.43 4.79
243 248 1.377229 CGTTGGAGGGGCAAACCTA 59.623 57.895 0.00 0.00 42.10 3.08
376 390 3.771160 CCGGAGTAGGTGCCGCTT 61.771 66.667 0.00 0.00 45.93 4.68
381 395 2.358737 GTAGGTGCCGCTTGCTGT 60.359 61.111 0.00 0.00 42.00 4.40
629 663 1.284715 GTTGTGTTGGGCGCCTTAC 59.715 57.895 28.56 23.49 0.00 2.34
634 668 2.038837 GTTGGGCGCCTTACAGTCC 61.039 63.158 28.56 7.32 0.00 3.85
636 670 3.766691 GGGCGCCTTACAGTCCGA 61.767 66.667 28.56 0.00 0.00 4.55
665 699 0.618458 AACATATGCTGGTGTCCGGT 59.382 50.000 0.00 0.00 31.34 5.28
673 708 0.606401 CTGGTGTCCGGTTGCTGATT 60.606 55.000 0.00 0.00 0.00 2.57
679 714 1.606668 GTCCGGTTGCTGATTCAAACA 59.393 47.619 0.00 0.00 33.41 2.83
699 734 8.763356 TCAAACAGATGAAAAATAATTGTGTGC 58.237 29.630 0.00 0.00 0.00 4.57
812 849 2.030893 CAGCAGCAAAATCGAGTTGGAA 60.031 45.455 3.71 0.00 0.00 3.53
814 851 2.030805 GCAGCAAAATCGAGTTGGAACT 60.031 45.455 3.71 0.00 43.16 3.01
1045 1088 9.054922 CAAATCCTTCTTCTCATTATCCTCTTC 57.945 37.037 0.00 0.00 0.00 2.87
1238 1281 3.148279 GGGTCACTCCGCCTCGAT 61.148 66.667 0.00 0.00 37.00 3.59
1439 1482 2.121538 GCCCTTCGGAAAGCCATCC 61.122 63.158 1.90 0.00 36.05 3.51
1488 1531 1.933765 ACTCCAGGTCCTGATCCTACT 59.066 52.381 21.23 0.00 32.44 2.57
1827 1884 9.677567 TCTTATATTGAAGTTTGCTGTTGTTTC 57.322 29.630 0.00 0.00 0.00 2.78
1834 1891 4.183101 AGTTTGCTGTTGTTTCATTGGTG 58.817 39.130 0.00 0.00 0.00 4.17
2437 2494 7.738437 AAATCACCCATACAAGAAATGGATT 57.262 32.000 3.67 0.00 45.77 3.01
2541 2598 4.261801 GCCTGCTTTAATAGAACCAGTGA 58.738 43.478 0.00 0.00 0.00 3.41
2669 2726 4.653341 AGCTCTACCAACAAGCTATGAGAT 59.347 41.667 0.00 0.00 44.28 2.75
2761 2818 2.154462 CCCAAAGACAAGCTCGTGATT 58.846 47.619 0.00 0.00 0.00 2.57
2830 2887 2.031258 TGGCGGAGATTGCGATTTTA 57.969 45.000 0.00 0.00 30.86 1.52
3036 3101 8.537049 TCTGATGAAAATTTGCAATTTACCAG 57.463 30.769 2.14 7.30 0.00 4.00
3075 3140 5.657474 CTTGCAATAACCAGCTGATGATTT 58.343 37.500 17.39 2.63 0.00 2.17
3395 3460 2.487086 GCTGAAAACCCTTGGCCATTTT 60.487 45.455 6.09 10.75 0.00 1.82
3443 3508 6.600032 TGGTCACTACATGTTTACAACTTGTT 59.400 34.615 2.30 0.00 44.41 2.83
3463 3528 6.343226 TGTTGCTTTACAGTTGAATTTTGC 57.657 33.333 0.00 0.00 0.00 3.68
3478 3543 3.742433 TTTTGCCCTTGGTGTACATTG 57.258 42.857 0.00 0.00 0.00 2.82
3548 3613 4.142182 TGTTCCTTGCAAAAAGAGGACTTG 60.142 41.667 3.48 0.00 39.21 3.16
3942 4011 8.828688 ACTTGATCAAAACTAACAGTACTACC 57.171 34.615 9.88 0.00 0.00 3.18
4266 5459 6.267928 GTGACCTGGATAGTATAACACCATCT 59.732 42.308 0.00 0.00 0.00 2.90
4395 6758 4.326009 CAGTTTGGTGTTTCTTTTGTTCCG 59.674 41.667 0.00 0.00 0.00 4.30
4574 7214 5.649831 CCCTTATCACTCTCTTTTCCTTTGG 59.350 44.000 0.00 0.00 0.00 3.28
4895 7535 9.672086 TTGCTATATGTTTGTTTGTTTGACTAC 57.328 29.630 0.00 0.00 0.00 2.73
5074 7758 0.820074 TTGTTTTGGCATCGGTCGGT 60.820 50.000 0.00 0.00 0.00 4.69
5084 7768 2.920647 GCATCGGTCGGTTTTTCCAAAG 60.921 50.000 0.00 0.00 35.57 2.77
5086 7770 3.191078 TCGGTCGGTTTTTCCAAAGTA 57.809 42.857 0.00 0.00 35.57 2.24
5087 7771 3.539604 TCGGTCGGTTTTTCCAAAGTAA 58.460 40.909 0.00 0.00 35.57 2.24
5088 7772 4.136051 TCGGTCGGTTTTTCCAAAGTAAT 58.864 39.130 0.00 0.00 35.57 1.89
5089 7773 4.579753 TCGGTCGGTTTTTCCAAAGTAATT 59.420 37.500 0.00 0.00 35.57 1.40
5090 7774 5.762218 TCGGTCGGTTTTTCCAAAGTAATTA 59.238 36.000 0.00 0.00 35.57 1.40
5091 7775 6.430616 TCGGTCGGTTTTTCCAAAGTAATTAT 59.569 34.615 0.00 0.00 35.57 1.28
5092 7776 7.605691 TCGGTCGGTTTTTCCAAAGTAATTATA 59.394 33.333 0.00 0.00 35.57 0.98
5093 7777 8.235905 CGGTCGGTTTTTCCAAAGTAATTATAA 58.764 33.333 0.00 0.00 35.57 0.98
5121 7805 4.922692 TGTTTTGGCATCGATCATGTTTTC 59.077 37.500 0.00 0.00 34.56 2.29
5134 7818 8.739039 TCGATCATGTTTTCCAAAATAACTGAT 58.261 29.630 0.00 0.00 0.00 2.90
5138 7822 8.087750 TCATGTTTTCCAAAATAACTGATGTCC 58.912 33.333 0.00 0.00 0.00 4.02
5149 7833 2.236223 CTGATGTCCTGGCTCAGCGT 62.236 60.000 7.50 0.00 30.91 5.07
5173 7857 0.685660 AACGGGTTCCAGACTTCTCC 59.314 55.000 0.00 0.00 0.00 3.71
5188 7872 6.695278 CAGACTTCTCCGATTCTAACATCTTC 59.305 42.308 0.00 0.00 0.00 2.87
5205 7889 3.860717 CGCAGACGAACATCAGCA 58.139 55.556 0.00 0.00 43.93 4.41
5207 7891 1.559831 CGCAGACGAACATCAGCATA 58.440 50.000 0.00 0.00 43.93 3.14
5208 7892 1.256376 CGCAGACGAACATCAGCATAC 59.744 52.381 0.00 0.00 43.93 2.39
5209 7893 1.256376 GCAGACGAACATCAGCATACG 59.744 52.381 0.00 0.00 31.77 3.06
5210 7894 2.530177 CAGACGAACATCAGCATACGT 58.470 47.619 0.00 0.00 36.71 3.57
5211 7895 2.531912 CAGACGAACATCAGCATACGTC 59.468 50.000 0.00 0.00 46.35 4.34
5212 7896 2.526077 GACGAACATCAGCATACGTCA 58.474 47.619 0.00 0.00 45.66 4.35
5215 7928 3.306973 ACGAACATCAGCATACGTCATTG 59.693 43.478 0.00 0.00 0.00 2.82
5218 7931 2.216046 CATCAGCATACGTCATTGGCT 58.784 47.619 0.00 0.00 34.64 4.75
5222 7935 1.762957 AGCATACGTCATTGGCTAGGT 59.237 47.619 0.00 0.00 32.09 3.08
5251 7966 1.251251 GCAAGACATGGGTGAGCTTT 58.749 50.000 0.00 0.00 0.00 3.51
5275 7990 2.070573 AGACCCAAAACCCTACACCAT 58.929 47.619 0.00 0.00 0.00 3.55
5328 8043 3.379445 GTCCAACCGCCTCGAGGA 61.379 66.667 35.69 9.67 37.39 3.71
5356 8071 3.615110 GCTCTCCAACATGAAGAACGAGA 60.615 47.826 0.00 0.03 0.00 4.04
5368 8083 6.489127 TGAAGAACGAGAAAACAAGAACAA 57.511 33.333 0.00 0.00 0.00 2.83
5369 8084 6.542852 TGAAGAACGAGAAAACAAGAACAAG 58.457 36.000 0.00 0.00 0.00 3.16
5370 8085 5.485662 AGAACGAGAAAACAAGAACAAGG 57.514 39.130 0.00 0.00 0.00 3.61
5371 8086 4.335594 AGAACGAGAAAACAAGAACAAGGG 59.664 41.667 0.00 0.00 0.00 3.95
5372 8087 3.881220 ACGAGAAAACAAGAACAAGGGA 58.119 40.909 0.00 0.00 0.00 4.20
5373 8088 3.877508 ACGAGAAAACAAGAACAAGGGAG 59.122 43.478 0.00 0.00 0.00 4.30
5374 8089 4.127171 CGAGAAAACAAGAACAAGGGAGA 58.873 43.478 0.00 0.00 0.00 3.71
5375 8090 4.212214 CGAGAAAACAAGAACAAGGGAGAG 59.788 45.833 0.00 0.00 0.00 3.20
5376 8091 5.368989 GAGAAAACAAGAACAAGGGAGAGA 58.631 41.667 0.00 0.00 0.00 3.10
5377 8092 5.946486 AGAAAACAAGAACAAGGGAGAGAT 58.054 37.500 0.00 0.00 0.00 2.75
5378 8093 5.767168 AGAAAACAAGAACAAGGGAGAGATG 59.233 40.000 0.00 0.00 0.00 2.90
5379 8094 4.713792 AACAAGAACAAGGGAGAGATGT 57.286 40.909 0.00 0.00 0.00 3.06
5380 8095 5.825593 AACAAGAACAAGGGAGAGATGTA 57.174 39.130 0.00 0.00 0.00 2.29
5381 8096 5.825593 ACAAGAACAAGGGAGAGATGTAA 57.174 39.130 0.00 0.00 0.00 2.41
5382 8097 5.552178 ACAAGAACAAGGGAGAGATGTAAC 58.448 41.667 0.00 0.00 0.00 2.50
5383 8098 4.457834 AGAACAAGGGAGAGATGTAACG 57.542 45.455 0.00 0.00 0.00 3.18
5384 8099 3.195825 AGAACAAGGGAGAGATGTAACGG 59.804 47.826 0.00 0.00 0.00 4.44
5385 8100 1.831736 ACAAGGGAGAGATGTAACGGG 59.168 52.381 0.00 0.00 0.00 5.28
5386 8101 1.831736 CAAGGGAGAGATGTAACGGGT 59.168 52.381 0.00 0.00 0.00 5.28
5387 8102 3.028850 CAAGGGAGAGATGTAACGGGTA 58.971 50.000 0.00 0.00 0.00 3.69
5388 8103 2.946785 AGGGAGAGATGTAACGGGTAG 58.053 52.381 0.00 0.00 0.00 3.18
5389 8104 1.962100 GGGAGAGATGTAACGGGTAGG 59.038 57.143 0.00 0.00 0.00 3.18
5390 8105 2.423947 GGGAGAGATGTAACGGGTAGGA 60.424 54.545 0.00 0.00 0.00 2.94
5391 8106 2.885894 GGAGAGATGTAACGGGTAGGAG 59.114 54.545 0.00 0.00 0.00 3.69
5392 8107 3.434739 GGAGAGATGTAACGGGTAGGAGA 60.435 52.174 0.00 0.00 0.00 3.71
5393 8108 4.205587 GAGAGATGTAACGGGTAGGAGAA 58.794 47.826 0.00 0.00 0.00 2.87
5394 8109 4.607239 AGAGATGTAACGGGTAGGAGAAA 58.393 43.478 0.00 0.00 0.00 2.52
5395 8110 5.021458 AGAGATGTAACGGGTAGGAGAAAA 58.979 41.667 0.00 0.00 0.00 2.29
5396 8111 5.482878 AGAGATGTAACGGGTAGGAGAAAAA 59.517 40.000 0.00 0.00 0.00 1.94
5397 8112 5.731591 AGATGTAACGGGTAGGAGAAAAAG 58.268 41.667 0.00 0.00 0.00 2.27
5398 8113 4.961438 TGTAACGGGTAGGAGAAAAAGT 57.039 40.909 0.00 0.00 0.00 2.66
5399 8114 5.294734 TGTAACGGGTAGGAGAAAAAGTT 57.705 39.130 0.00 0.00 0.00 2.66
5400 8115 5.058490 TGTAACGGGTAGGAGAAAAAGTTG 58.942 41.667 0.00 0.00 0.00 3.16
5401 8116 3.136009 ACGGGTAGGAGAAAAAGTTGG 57.864 47.619 0.00 0.00 0.00 3.77
5402 8117 1.810755 CGGGTAGGAGAAAAAGTTGGC 59.189 52.381 0.00 0.00 0.00 4.52
5403 8118 2.552373 CGGGTAGGAGAAAAAGTTGGCT 60.552 50.000 0.00 0.00 0.00 4.75
5404 8119 3.082548 GGGTAGGAGAAAAAGTTGGCTC 58.917 50.000 0.00 0.00 0.00 4.70
5405 8120 3.082548 GGTAGGAGAAAAAGTTGGCTCC 58.917 50.000 9.71 9.71 45.70 4.70
5406 8121 2.294449 AGGAGAAAAAGTTGGCTCCC 57.706 50.000 12.74 0.00 46.35 4.30
5407 8122 1.203063 AGGAGAAAAAGTTGGCTCCCC 60.203 52.381 12.74 0.00 46.35 4.81
5408 8123 0.881796 GAGAAAAAGTTGGCTCCCCG 59.118 55.000 0.00 0.00 0.00 5.73
5409 8124 1.179174 AGAAAAAGTTGGCTCCCCGC 61.179 55.000 0.00 0.00 38.13 6.13
5428 8143 2.417719 CCTATGGGCTACCCTAGGTT 57.582 55.000 8.29 0.00 45.70 3.50
5429 8144 1.978580 CCTATGGGCTACCCTAGGTTG 59.021 57.143 8.29 0.00 45.70 3.77
5430 8145 1.978580 CTATGGGCTACCCTAGGTTGG 59.021 57.143 8.29 0.00 45.70 3.77
5431 8146 0.045778 ATGGGCTACCCTAGGTTGGT 59.954 55.000 8.29 0.84 45.70 3.67
5432 8147 0.619543 TGGGCTACCCTAGGTTGGTC 60.620 60.000 8.29 0.00 45.70 4.02
5433 8148 1.343431 GGGCTACCCTAGGTTGGTCC 61.343 65.000 8.29 1.98 41.34 4.46
5434 8149 0.619543 GGCTACCCTAGGTTGGTCCA 60.620 60.000 8.29 0.00 37.09 4.02
5435 8150 1.282382 GCTACCCTAGGTTGGTCCAA 58.718 55.000 8.29 0.00 37.09 3.53
5436 8151 1.844497 GCTACCCTAGGTTGGTCCAAT 59.156 52.381 7.77 0.00 37.09 3.16
5437 8152 2.158798 GCTACCCTAGGTTGGTCCAATC 60.159 54.545 7.77 7.26 37.09 2.67
5438 8153 0.909623 ACCCTAGGTTGGTCCAATCG 59.090 55.000 7.77 0.00 39.02 3.34
5439 8154 0.463833 CCCTAGGTTGGTCCAATCGC 60.464 60.000 7.77 0.00 39.02 4.58
5440 8155 0.463833 CCTAGGTTGGTCCAATCGCC 60.464 60.000 7.77 4.55 39.02 5.54
5441 8156 0.541863 CTAGGTTGGTCCAATCGCCT 59.458 55.000 14.86 14.86 39.02 5.52
5442 8157 0.988832 TAGGTTGGTCCAATCGCCTT 59.011 50.000 15.52 0.00 39.02 4.35
5443 8158 0.609131 AGGTTGGTCCAATCGCCTTG 60.609 55.000 7.77 0.00 39.02 3.61
5444 8159 0.608035 GGTTGGTCCAATCGCCTTGA 60.608 55.000 7.77 0.00 36.97 3.02
5445 8160 0.804989 GTTGGTCCAATCGCCTTGAG 59.195 55.000 7.77 0.00 36.97 3.02
5446 8161 0.322456 TTGGTCCAATCGCCTTGAGG 60.322 55.000 0.00 0.00 36.97 3.86
5447 8162 1.198094 TGGTCCAATCGCCTTGAGGA 61.198 55.000 0.06 0.00 36.97 3.71
5448 8163 0.181350 GGTCCAATCGCCTTGAGGAT 59.819 55.000 0.06 0.00 36.97 3.24
5449 8164 1.587547 GTCCAATCGCCTTGAGGATC 58.412 55.000 0.06 0.00 36.97 3.36
5450 8165 0.104855 TCCAATCGCCTTGAGGATCG 59.895 55.000 0.06 0.00 38.61 3.69
5451 8166 0.179073 CCAATCGCCTTGAGGATCGT 60.179 55.000 0.06 0.00 38.61 3.73
5452 8167 1.656652 CAATCGCCTTGAGGATCGTT 58.343 50.000 0.06 0.00 38.61 3.85
5453 8168 1.328680 CAATCGCCTTGAGGATCGTTG 59.671 52.381 0.06 1.03 38.61 4.10
5454 8169 0.811616 ATCGCCTTGAGGATCGTTGC 60.812 55.000 0.06 0.00 38.61 4.17
5455 8170 1.448540 CGCCTTGAGGATCGTTGCT 60.449 57.895 0.06 0.00 38.61 3.91
5456 8171 1.424493 CGCCTTGAGGATCGTTGCTC 61.424 60.000 7.97 7.97 40.51 4.26
5457 8172 0.107945 GCCTTGAGGATCGTTGCTCT 60.108 55.000 14.94 0.00 40.72 4.09
5458 8173 1.933247 CCTTGAGGATCGTTGCTCTC 58.067 55.000 14.94 2.70 40.72 3.20
5459 8174 1.472376 CCTTGAGGATCGTTGCTCTCC 60.472 57.143 14.94 0.00 40.72 3.71
5460 8175 1.205655 CTTGAGGATCGTTGCTCTCCA 59.794 52.381 14.94 0.65 40.72 3.86
5461 8176 1.266178 TGAGGATCGTTGCTCTCCAA 58.734 50.000 14.94 0.00 40.72 3.53
5472 8187 2.416747 TGCTCTCCAACATGAAGAACG 58.583 47.619 0.00 0.00 0.00 3.95
5473 8188 2.037121 TGCTCTCCAACATGAAGAACGA 59.963 45.455 0.00 0.00 0.00 3.85
5474 8189 2.670414 GCTCTCCAACATGAAGAACGAG 59.330 50.000 0.00 0.00 0.00 4.18
5475 8190 3.615110 GCTCTCCAACATGAAGAACGAGA 60.615 47.826 0.00 0.03 0.00 4.04
5476 8191 4.560128 CTCTCCAACATGAAGAACGAGAA 58.440 43.478 0.00 0.00 0.00 2.87
5477 8192 4.956085 TCTCCAACATGAAGAACGAGAAA 58.044 39.130 0.00 0.00 0.00 2.52
5478 8193 5.364778 TCTCCAACATGAAGAACGAGAAAA 58.635 37.500 0.00 0.00 0.00 2.29
5479 8194 5.236478 TCTCCAACATGAAGAACGAGAAAAC 59.764 40.000 0.00 0.00 0.00 2.43
5480 8195 4.878971 TCCAACATGAAGAACGAGAAAACA 59.121 37.500 0.00 0.00 0.00 2.83
5481 8196 5.355630 TCCAACATGAAGAACGAGAAAACAA 59.644 36.000 0.00 0.00 0.00 2.83
5482 8197 5.682862 CCAACATGAAGAACGAGAAAACAAG 59.317 40.000 0.00 0.00 0.00 3.16
5483 8198 6.458206 CCAACATGAAGAACGAGAAAACAAGA 60.458 38.462 0.00 0.00 0.00 3.02
5484 8199 6.677781 ACATGAAGAACGAGAAAACAAGAA 57.322 33.333 0.00 0.00 0.00 2.52
5485 8200 6.487103 ACATGAAGAACGAGAAAACAAGAAC 58.513 36.000 0.00 0.00 0.00 3.01
5486 8201 6.093495 ACATGAAGAACGAGAAAACAAGAACA 59.907 34.615 0.00 0.00 0.00 3.18
5487 8202 6.489127 TGAAGAACGAGAAAACAAGAACAA 57.511 33.333 0.00 0.00 0.00 2.83
5494 8209 4.212214 CGAGAAAACAAGAACAAGGGAGAG 59.788 45.833 0.00 0.00 0.00 3.20
5501 8216 5.552178 ACAAGAACAAGGGAGAGATGTAAC 58.448 41.667 0.00 0.00 0.00 2.50
5503 8218 5.413309 AGAACAAGGGAGAGATGTAACAG 57.587 43.478 0.00 0.00 0.00 3.16
5518 8233 7.746703 AGATGTAACAGGTAGGAGAAAAAGTT 58.253 34.615 0.00 0.00 0.00 2.66
5520 8235 6.059484 TGTAACAGGTAGGAGAAAAAGTTGG 58.941 40.000 0.00 0.00 0.00 3.77
5521 8236 3.487372 ACAGGTAGGAGAAAAAGTTGGC 58.513 45.455 0.00 0.00 0.00 4.52
5526 8292 2.868899 AGGAGAAAAAGTTGGCTCTGG 58.131 47.619 0.00 0.00 0.00 3.86
5528 8294 2.554462 GGAGAAAAAGTTGGCTCTGGTC 59.446 50.000 0.00 0.00 0.00 4.02
5532 8298 2.337879 AAAGTTGGCTCTGGTCGGCA 62.338 55.000 0.00 0.00 34.94 5.69
5575 8341 1.153449 TCCCCGTCATCGTCATTGC 60.153 57.895 0.00 0.00 35.01 3.56
5593 8359 2.037871 CGAGGGTTGGGTTTGTTGG 58.962 57.895 0.00 0.00 0.00 3.77
5606 8372 3.403968 GTTTGTTGGGGTTGTTGTTGTT 58.596 40.909 0.00 0.00 0.00 2.83
5607 8373 3.320673 TTGTTGGGGTTGTTGTTGTTC 57.679 42.857 0.00 0.00 0.00 3.18
5608 8374 1.202582 TGTTGGGGTTGTTGTTGTTCG 59.797 47.619 0.00 0.00 0.00 3.95
5609 8375 1.202817 GTTGGGGTTGTTGTTGTTCGT 59.797 47.619 0.00 0.00 0.00 3.85
5610 8376 1.096416 TGGGGTTGTTGTTGTTCGTC 58.904 50.000 0.00 0.00 0.00 4.20
5611 8377 1.096416 GGGGTTGTTGTTGTTCGTCA 58.904 50.000 0.00 0.00 0.00 4.35
5612 8378 1.679153 GGGGTTGTTGTTGTTCGTCAT 59.321 47.619 0.00 0.00 0.00 3.06
5613 8379 2.100087 GGGGTTGTTGTTGTTCGTCATT 59.900 45.455 0.00 0.00 0.00 2.57
5614 8380 3.112580 GGGTTGTTGTTGTTCGTCATTG 58.887 45.455 0.00 0.00 0.00 2.82
5615 8381 2.533942 GGTTGTTGTTGTTCGTCATTGC 59.466 45.455 0.00 0.00 0.00 3.56
5616 8382 3.175152 GTTGTTGTTGTTCGTCATTGCA 58.825 40.909 0.00 0.00 0.00 4.08
5617 8383 3.494045 TGTTGTTGTTCGTCATTGCAA 57.506 38.095 0.00 0.00 0.00 4.08
5618 8384 3.433709 TGTTGTTGTTCGTCATTGCAAG 58.566 40.909 4.94 0.00 0.00 4.01
5619 8385 2.772568 TGTTGTTCGTCATTGCAAGG 57.227 45.000 4.34 4.34 0.00 3.61
5620 8386 1.336440 TGTTGTTCGTCATTGCAAGGG 59.664 47.619 11.73 2.73 0.00 3.95
5621 8387 1.336755 GTTGTTCGTCATTGCAAGGGT 59.663 47.619 11.73 0.00 0.00 4.34
5622 8388 1.686355 TGTTCGTCATTGCAAGGGTT 58.314 45.000 11.73 0.00 0.00 4.11
5623 8389 1.336440 TGTTCGTCATTGCAAGGGTTG 59.664 47.619 11.73 0.91 0.00 3.77
5624 8390 0.958091 TTCGTCATTGCAAGGGTTGG 59.042 50.000 11.73 0.00 0.00 3.77
5625 8391 0.893270 TCGTCATTGCAAGGGTTGGG 60.893 55.000 11.73 0.00 0.00 4.12
5626 8392 1.178534 CGTCATTGCAAGGGTTGGGT 61.179 55.000 11.73 0.00 0.00 4.51
5627 8393 1.047801 GTCATTGCAAGGGTTGGGTT 58.952 50.000 11.73 0.00 0.00 4.11
5628 8394 1.416030 GTCATTGCAAGGGTTGGGTTT 59.584 47.619 11.73 0.00 0.00 3.27
5629 8395 1.415659 TCATTGCAAGGGTTGGGTTTG 59.584 47.619 11.73 0.00 0.00 2.93
5630 8396 1.140652 CATTGCAAGGGTTGGGTTTGT 59.859 47.619 4.94 0.00 0.00 2.83
5631 8397 1.280457 TTGCAAGGGTTGGGTTTGTT 58.720 45.000 0.00 0.00 0.00 2.83
5632 8398 0.539051 TGCAAGGGTTGGGTTTGTTG 59.461 50.000 0.00 0.00 0.00 3.33
5633 8399 0.179059 GCAAGGGTTGGGTTTGTTGG 60.179 55.000 0.00 0.00 0.00 3.77
5634 8400 0.467804 CAAGGGTTGGGTTTGTTGGG 59.532 55.000 0.00 0.00 0.00 4.12
5635 8401 0.692756 AAGGGTTGGGTTTGTTGGGG 60.693 55.000 0.00 0.00 0.00 4.96
5636 8402 1.383386 GGGTTGGGTTTGTTGGGGT 60.383 57.895 0.00 0.00 0.00 4.95
5637 8403 0.983905 GGGTTGGGTTTGTTGGGGTT 60.984 55.000 0.00 0.00 0.00 4.11
5638 8404 0.179234 GGTTGGGTTTGTTGGGGTTG 59.821 55.000 0.00 0.00 0.00 3.77
5639 8405 0.906066 GTTGGGTTTGTTGGGGTTGT 59.094 50.000 0.00 0.00 0.00 3.32
5640 8406 1.279558 GTTGGGTTTGTTGGGGTTGTT 59.720 47.619 0.00 0.00 0.00 2.83
5641 8407 0.905357 TGGGTTTGTTGGGGTTGTTG 59.095 50.000 0.00 0.00 0.00 3.33
5642 8408 0.906066 GGGTTTGTTGGGGTTGTTGT 59.094 50.000 0.00 0.00 0.00 3.32
5643 8409 1.279558 GGGTTTGTTGGGGTTGTTGTT 59.720 47.619 0.00 0.00 0.00 2.83
5644 8410 2.351455 GGTTTGTTGGGGTTGTTGTTG 58.649 47.619 0.00 0.00 0.00 3.33
5645 8411 2.289756 GGTTTGTTGGGGTTGTTGTTGT 60.290 45.455 0.00 0.00 0.00 3.32
5653 8419 1.476488 GGGTTGTTGTTGTTGAGCAGT 59.524 47.619 0.00 0.00 0.00 4.40
5654 8420 2.529151 GGTTGTTGTTGTTGAGCAGTG 58.471 47.619 0.00 0.00 0.00 3.66
5686 8452 6.034898 GCTTAATGACCCAACAATTTCGATTG 59.965 38.462 0.00 0.00 37.54 2.67
5687 8453 3.932545 TGACCCAACAATTTCGATTGG 57.067 42.857 7.61 7.61 42.21 3.16
5693 8459 3.005261 CCAACAATTTCGATTGGTGTGGA 59.995 43.478 14.08 0.00 45.22 4.02
5700 8466 0.677731 CGATTGGTGTGGAGCATGGT 60.678 55.000 0.00 0.00 0.00 3.55
5707 8473 1.267806 GTGTGGAGCATGGTTGTTCAG 59.732 52.381 0.00 0.00 34.98 3.02
5721 8487 4.515191 GGTTGTTCAGCTATGAGTTGTTGA 59.485 41.667 0.00 0.00 36.61 3.18
5722 8488 5.008613 GGTTGTTCAGCTATGAGTTGTTGAA 59.991 40.000 0.00 0.00 36.61 2.69
5723 8489 6.459573 GGTTGTTCAGCTATGAGTTGTTGAAA 60.460 38.462 0.00 0.00 35.74 2.69
5724 8490 6.060028 TGTTCAGCTATGAGTTGTTGAAAC 57.940 37.500 0.00 0.00 35.74 2.78
5725 8491 4.990543 TCAGCTATGAGTTGTTGAAACG 57.009 40.909 0.00 0.00 0.00 3.60
5726 8492 3.186409 TCAGCTATGAGTTGTTGAAACGC 59.814 43.478 0.00 0.00 0.00 4.84
5727 8493 2.484264 AGCTATGAGTTGTTGAAACGCC 59.516 45.455 0.00 0.00 0.00 5.68
5728 8494 2.414161 GCTATGAGTTGTTGAAACGCCC 60.414 50.000 0.00 0.00 0.00 6.13
5729 8495 1.981256 ATGAGTTGTTGAAACGCCCT 58.019 45.000 0.00 0.00 0.00 5.19
5730 8496 1.305201 TGAGTTGTTGAAACGCCCTC 58.695 50.000 0.00 0.00 0.00 4.30
5731 8497 0.234884 GAGTTGTTGAAACGCCCTCG 59.765 55.000 0.00 0.00 42.43 4.63
5732 8498 0.179067 AGTTGTTGAAACGCCCTCGA 60.179 50.000 0.00 0.00 39.41 4.04
5733 8499 0.872388 GTTGTTGAAACGCCCTCGAT 59.128 50.000 0.00 0.00 39.41 3.59
5734 8500 0.871722 TTGTTGAAACGCCCTCGATG 59.128 50.000 0.00 0.00 39.41 3.84
5735 8501 1.134694 GTTGAAACGCCCTCGATGC 59.865 57.895 0.00 0.00 39.41 3.91
5742 8508 2.970639 GCCCTCGATGCGGCTATA 59.029 61.111 10.26 0.00 42.21 1.31
5743 8509 1.517832 GCCCTCGATGCGGCTATAT 59.482 57.895 10.26 0.00 42.21 0.86
5744 8510 0.528684 GCCCTCGATGCGGCTATATC 60.529 60.000 10.26 0.00 42.21 1.63
5745 8511 1.107114 CCCTCGATGCGGCTATATCT 58.893 55.000 0.00 0.00 0.00 1.98
5746 8512 1.066303 CCCTCGATGCGGCTATATCTC 59.934 57.143 0.00 0.00 0.00 2.75
5747 8513 1.066303 CCTCGATGCGGCTATATCTCC 59.934 57.143 0.00 0.00 0.00 3.71
5748 8514 1.066303 CTCGATGCGGCTATATCTCCC 59.934 57.143 0.00 0.00 0.00 4.30
5749 8515 0.817654 CGATGCGGCTATATCTCCCA 59.182 55.000 0.00 0.00 0.00 4.37
5750 8516 1.469940 CGATGCGGCTATATCTCCCAC 60.470 57.143 0.00 0.00 0.00 4.61
5751 8517 0.532573 ATGCGGCTATATCTCCCACG 59.467 55.000 0.00 0.00 0.00 4.94
5752 8518 0.826256 TGCGGCTATATCTCCCACGT 60.826 55.000 0.00 0.00 0.00 4.49
5753 8519 0.388649 GCGGCTATATCTCCCACGTG 60.389 60.000 9.08 9.08 0.00 4.49
5754 8520 0.959553 CGGCTATATCTCCCACGTGT 59.040 55.000 15.65 0.00 0.00 4.49
5755 8521 1.068472 CGGCTATATCTCCCACGTGTC 60.068 57.143 15.65 0.00 0.00 3.67
5756 8522 1.068472 GGCTATATCTCCCACGTGTCG 60.068 57.143 15.65 4.04 0.00 4.35
5757 8523 1.878088 GCTATATCTCCCACGTGTCGA 59.122 52.381 15.65 8.55 0.00 4.20
5758 8524 2.292569 GCTATATCTCCCACGTGTCGAA 59.707 50.000 15.65 0.00 0.00 3.71
5759 8525 3.609644 GCTATATCTCCCACGTGTCGAAG 60.610 52.174 15.65 6.13 0.00 3.79
5760 8526 0.454600 TATCTCCCACGTGTCGAAGC 59.545 55.000 15.65 0.00 0.00 3.86
5761 8527 1.532604 ATCTCCCACGTGTCGAAGCA 61.533 55.000 15.65 0.00 0.00 3.91
5762 8528 2.022129 CTCCCACGTGTCGAAGCAC 61.022 63.158 15.65 0.00 36.12 4.40
5773 8539 0.170561 TCGAAGCACGACTTAGAGGC 59.829 55.000 2.09 0.00 46.45 4.70
5774 8540 0.109272 CGAAGCACGACTTAGAGGCA 60.109 55.000 0.00 0.00 45.77 4.75
5775 8541 1.469940 CGAAGCACGACTTAGAGGCAT 60.470 52.381 0.00 0.00 45.77 4.40
5776 8542 2.223502 CGAAGCACGACTTAGAGGCATA 60.224 50.000 0.00 0.00 45.77 3.14
5777 8543 3.733988 CGAAGCACGACTTAGAGGCATAA 60.734 47.826 0.00 0.00 45.77 1.90
5778 8544 3.166489 AGCACGACTTAGAGGCATAAC 57.834 47.619 0.00 0.00 0.00 1.89
5779 8545 2.159085 AGCACGACTTAGAGGCATAACC 60.159 50.000 0.00 0.00 39.61 2.85
5780 8546 2.460918 CACGACTTAGAGGCATAACCG 58.539 52.381 0.00 0.00 46.52 4.44
5781 8547 1.202382 ACGACTTAGAGGCATAACCGC 60.202 52.381 0.00 0.00 46.52 5.68
5782 8548 1.202371 CGACTTAGAGGCATAACCGCA 60.202 52.381 0.00 0.00 46.52 5.69
5783 8549 2.545952 CGACTTAGAGGCATAACCGCAT 60.546 50.000 0.00 0.00 46.52 4.73
5784 8550 3.467803 GACTTAGAGGCATAACCGCATT 58.532 45.455 0.00 0.00 46.52 3.56
5785 8551 3.206150 ACTTAGAGGCATAACCGCATTG 58.794 45.455 0.00 0.00 46.52 2.82
5786 8552 3.118408 ACTTAGAGGCATAACCGCATTGA 60.118 43.478 0.00 0.00 46.52 2.57
5787 8553 2.418368 AGAGGCATAACCGCATTGAA 57.582 45.000 0.00 0.00 46.52 2.69
5788 8554 2.722094 AGAGGCATAACCGCATTGAAA 58.278 42.857 0.00 0.00 46.52 2.69
5789 8555 2.684881 AGAGGCATAACCGCATTGAAAG 59.315 45.455 0.00 0.00 46.52 2.62
5790 8556 1.134946 AGGCATAACCGCATTGAAAGC 59.865 47.619 0.00 0.00 46.52 3.51
5791 8557 1.135141 GGCATAACCGCATTGAAAGCA 60.135 47.619 0.00 0.00 0.00 3.91
5792 8558 2.605030 GCATAACCGCATTGAAAGCAA 58.395 42.857 0.00 0.00 38.60 3.91
5793 8559 3.189285 GCATAACCGCATTGAAAGCAAT 58.811 40.909 0.00 0.00 45.33 3.56
5802 8568 3.648339 ATTGAAAGCAATGTCGCAAGT 57.352 38.095 0.00 0.00 42.91 3.16
5803 8569 2.404265 TGAAAGCAATGTCGCAAGTG 57.596 45.000 0.00 0.00 39.48 3.16
5804 8570 1.946081 TGAAAGCAATGTCGCAAGTGA 59.054 42.857 0.00 0.00 39.48 3.41
5805 8571 2.031769 TGAAAGCAATGTCGCAAGTGAG 60.032 45.455 0.00 0.00 39.48 3.51
5806 8572 0.877071 AAGCAATGTCGCAAGTGAGG 59.123 50.000 0.00 0.00 39.48 3.86
5807 8573 0.250467 AGCAATGTCGCAAGTGAGGT 60.250 50.000 0.00 0.00 39.48 3.85
5808 8574 1.001974 AGCAATGTCGCAAGTGAGGTA 59.998 47.619 0.00 0.00 39.48 3.08
5809 8575 1.804151 GCAATGTCGCAAGTGAGGTAA 59.196 47.619 0.00 0.00 39.48 2.85
5810 8576 2.420022 GCAATGTCGCAAGTGAGGTAAT 59.580 45.455 0.00 0.00 39.48 1.89
5811 8577 3.485877 GCAATGTCGCAAGTGAGGTAATC 60.486 47.826 0.00 0.00 39.48 1.75
5812 8578 3.895232 ATGTCGCAAGTGAGGTAATCT 57.105 42.857 0.00 0.00 39.48 2.40
5813 8579 3.678056 TGTCGCAAGTGAGGTAATCTT 57.322 42.857 0.00 0.00 39.48 2.40
5814 8580 3.585862 TGTCGCAAGTGAGGTAATCTTC 58.414 45.455 0.00 0.00 39.48 2.87
5815 8581 3.006430 TGTCGCAAGTGAGGTAATCTTCA 59.994 43.478 0.00 0.00 39.48 3.02
5816 8582 3.368236 GTCGCAAGTGAGGTAATCTTCAC 59.632 47.826 2.97 2.97 46.51 3.18
5823 8589 3.751698 GTGAGGTAATCTTCACACAACCC 59.248 47.826 5.78 0.00 45.79 4.11
5824 8590 3.392947 TGAGGTAATCTTCACACAACCCA 59.607 43.478 0.00 0.00 0.00 4.51
5825 8591 4.042809 TGAGGTAATCTTCACACAACCCAT 59.957 41.667 0.00 0.00 0.00 4.00
5826 8592 4.335416 AGGTAATCTTCACACAACCCATG 58.665 43.478 0.00 0.00 0.00 3.66
5827 8593 4.079253 GGTAATCTTCACACAACCCATGT 58.921 43.478 0.00 0.00 45.34 3.21
5828 8594 5.013704 AGGTAATCTTCACACAACCCATGTA 59.986 40.000 0.00 0.00 41.46 2.29
5829 8595 5.708230 GGTAATCTTCACACAACCCATGTAA 59.292 40.000 0.00 0.00 41.46 2.41
5830 8596 6.377146 GGTAATCTTCACACAACCCATGTAAT 59.623 38.462 0.00 0.00 41.46 1.89
5831 8597 7.554835 GGTAATCTTCACACAACCCATGTAATA 59.445 37.037 0.00 0.00 41.46 0.98
5832 8598 7.391148 AATCTTCACACAACCCATGTAATAC 57.609 36.000 0.00 0.00 41.46 1.89
5833 8599 5.870706 TCTTCACACAACCCATGTAATACA 58.129 37.500 0.00 0.00 41.46 2.29
5834 8600 6.480763 TCTTCACACAACCCATGTAATACAT 58.519 36.000 0.00 0.00 41.46 2.29
5835 8601 7.625469 TCTTCACACAACCCATGTAATACATA 58.375 34.615 5.49 0.00 41.46 2.29
5836 8602 8.103935 TCTTCACACAACCCATGTAATACATAA 58.896 33.333 5.49 0.00 41.46 1.90
5837 8603 7.857734 TCACACAACCCATGTAATACATAAG 57.142 36.000 5.49 3.25 41.46 1.73
5838 8604 6.826231 TCACACAACCCATGTAATACATAAGG 59.174 38.462 15.94 15.94 41.46 2.69
5839 8605 6.039270 CACACAACCCATGTAATACATAAGGG 59.961 42.308 20.91 20.91 43.69 3.95
5840 8606 6.069323 ACACAACCCATGTAATACATAAGGGA 60.069 38.462 26.38 0.00 41.79 4.20
5841 8607 6.831353 CACAACCCATGTAATACATAAGGGAA 59.169 38.462 26.38 0.00 41.79 3.97
5842 8608 7.340743 CACAACCCATGTAATACATAAGGGAAA 59.659 37.037 26.38 0.00 41.79 3.13
5843 8609 7.559897 ACAACCCATGTAATACATAAGGGAAAG 59.440 37.037 26.38 18.92 41.79 2.62
5844 8610 7.460214 ACCCATGTAATACATAAGGGAAAGA 57.540 36.000 26.38 0.00 41.79 2.52
5845 8611 7.518188 ACCCATGTAATACATAAGGGAAAGAG 58.482 38.462 26.38 7.48 41.79 2.85
5846 8612 7.128883 ACCCATGTAATACATAAGGGAAAGAGT 59.871 37.037 26.38 8.10 41.79 3.24
5847 8613 7.998964 CCCATGTAATACATAAGGGAAAGAGTT 59.001 37.037 18.88 0.00 41.79 3.01
5857 8623 9.449719 ACATAAGGGAAAGAGTTACATAGTTTG 57.550 33.333 0.00 0.00 0.00 2.93
5858 8624 6.819397 AAGGGAAAGAGTTACATAGTTTGC 57.181 37.500 0.00 0.00 0.00 3.68
5859 8625 6.128138 AGGGAAAGAGTTACATAGTTTGCT 57.872 37.500 0.00 0.00 0.00 3.91
5860 8626 6.543735 AGGGAAAGAGTTACATAGTTTGCTT 58.456 36.000 0.00 0.00 0.00 3.91
5861 8627 7.686434 AGGGAAAGAGTTACATAGTTTGCTTA 58.314 34.615 0.00 0.00 0.00 3.09
5862 8628 7.606839 AGGGAAAGAGTTACATAGTTTGCTTAC 59.393 37.037 0.00 0.00 0.00 2.34
5863 8629 7.389607 GGGAAAGAGTTACATAGTTTGCTTACA 59.610 37.037 0.00 0.00 0.00 2.41
5864 8630 8.780249 GGAAAGAGTTACATAGTTTGCTTACAA 58.220 33.333 0.00 0.00 0.00 2.41
5867 8633 8.186178 AGAGTTACATAGTTTGCTTACAATCG 57.814 34.615 0.00 0.00 35.21 3.34
5868 8634 6.772078 AGTTACATAGTTTGCTTACAATCGC 58.228 36.000 0.00 0.00 35.21 4.58
5869 8635 4.616181 ACATAGTTTGCTTACAATCGCC 57.384 40.909 0.00 0.00 35.21 5.54
5870 8636 4.006989 ACATAGTTTGCTTACAATCGCCA 58.993 39.130 0.00 0.00 35.21 5.69
5871 8637 2.989422 AGTTTGCTTACAATCGCCAC 57.011 45.000 0.00 0.00 35.21 5.01
5872 8638 2.504367 AGTTTGCTTACAATCGCCACT 58.496 42.857 0.00 0.00 35.21 4.00
5873 8639 2.884639 AGTTTGCTTACAATCGCCACTT 59.115 40.909 0.00 0.00 35.21 3.16
5874 8640 3.058224 AGTTTGCTTACAATCGCCACTTC 60.058 43.478 0.00 0.00 35.21 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 109 1.562672 AATAAGGCCTGCACCTCCGT 61.563 55.000 5.69 0.00 39.93 4.69
123 128 3.037992 GCAACATCGCATGCGTCCA 62.038 57.895 36.50 20.73 40.74 4.02
179 184 4.693420 TCCTCCTCCTCTTCTTCATCTTT 58.307 43.478 0.00 0.00 0.00 2.52
319 333 0.617413 CCAGTTGCCTCTCTGGTGAT 59.383 55.000 3.38 0.00 44.19 3.06
336 350 1.228124 GGCTGTTGCTACACCACCA 60.228 57.895 12.43 0.00 39.59 4.17
500 532 8.415950 ACATAGTCCCAACATTTCAACATTTA 57.584 30.769 0.00 0.00 0.00 1.40
514 546 9.411189 ACAAACTTAACTTAAACATAGTCCCAA 57.589 29.630 0.00 0.00 0.00 4.12
601 635 2.890945 GCCCAACACAACAGACCTATTT 59.109 45.455 0.00 0.00 0.00 1.40
650 684 1.376683 GCAACCGGACACCAGCATA 60.377 57.895 9.46 0.00 0.00 3.14
652 686 3.872603 AGCAACCGGACACCAGCA 61.873 61.111 9.46 0.00 0.00 4.41
665 699 9.761504 TTATTTTTCATCTGTTTGAATCAGCAA 57.238 25.926 0.00 0.00 35.64 3.91
673 708 8.763356 GCACACAATTATTTTTCATCTGTTTGA 58.237 29.630 0.00 0.00 0.00 2.69
679 714 7.437862 ACAAACGCACACAATTATTTTTCATCT 59.562 29.630 0.00 0.00 0.00 2.90
699 734 0.637738 CCAACGCACAAACACAAACG 59.362 50.000 0.00 0.00 0.00 3.60
997 1040 0.835543 TGTTGGATTTGGGCTTGGGG 60.836 55.000 0.00 0.00 0.00 4.96
1045 1088 2.743928 GCGTGACTCCTGGCCAAG 60.744 66.667 7.01 4.55 0.00 3.61
1238 1281 1.601419 CGAGGTAGTGGCGGAAGGAA 61.601 60.000 0.00 0.00 0.00 3.36
1439 1482 2.202676 GAGGTTGAGCTCGCGGAG 60.203 66.667 6.13 3.47 0.00 4.63
1488 1531 0.482446 AGAATGGGGTTGGCAGTTGA 59.518 50.000 0.00 0.00 0.00 3.18
2437 2494 1.754226 TCAGTGGCTGCATACGTATCA 59.246 47.619 4.74 6.35 0.00 2.15
2541 2598 1.304134 GGAGGGGGAAACACGCATT 60.304 57.895 0.00 0.00 0.00 3.56
2761 2818 8.336806 GTGCATGTCAAATCAAAATCAGAAAAA 58.663 29.630 0.00 0.00 0.00 1.94
2830 2887 3.327757 TCTGACTAGCCTTTTGGTGTGAT 59.672 43.478 0.00 0.00 42.99 3.06
3075 3140 6.765036 TGCTGGAATTAAACAAAAAGCAATCA 59.235 30.769 0.00 0.00 36.54 2.57
3395 3460 7.452501 ACCATCATCAGAAAGAAATGGAAGAAA 59.547 33.333 13.52 0.00 42.20 2.52
3443 3508 4.100808 AGGGCAAAATTCAACTGTAAAGCA 59.899 37.500 0.00 0.00 0.00 3.91
3463 3528 7.610865 ACAAAATAATCAATGTACACCAAGGG 58.389 34.615 0.00 0.00 0.00 3.95
3682 3747 6.158598 CCAAGTTCTGTCAAATATTGGTTGG 58.841 40.000 0.00 0.00 32.82 3.77
3976 4045 2.750814 ACCATTGCCCCCAGAATTAAG 58.249 47.619 0.00 0.00 0.00 1.85
4057 4132 4.399934 ACGAGTTTTGGCTTTTGACCTTAA 59.600 37.500 0.00 0.00 0.00 1.85
4266 5459 6.785076 TGAGTCCCCAATATAAACAGACAAA 58.215 36.000 0.00 0.00 0.00 2.83
4281 5474 2.040278 CAAATCTCCAACTGAGTCCCCA 59.960 50.000 0.00 0.00 42.12 4.96
4395 6758 2.814336 CTCTACCAAACCAGGAAGCAAC 59.186 50.000 0.00 0.00 0.00 4.17
4574 7214 0.875059 GCTGGTACCAGTCTTGTTGC 59.125 55.000 36.31 20.75 45.24 4.17
4895 7535 5.723405 TGATCAGTCCCAGGATAAGGATATG 59.277 44.000 0.00 0.00 33.88 1.78
5055 7739 0.820074 ACCGACCGATGCCAAAACAA 60.820 50.000 0.00 0.00 0.00 2.83
5086 7770 9.985730 ATCGATGCCAAAACATCAATTATAATT 57.014 25.926 4.81 4.81 45.56 1.40
5087 7771 9.630098 GATCGATGCCAAAACATCAATTATAAT 57.370 29.630 0.54 0.00 45.56 1.28
5088 7772 8.628280 TGATCGATGCCAAAACATCAATTATAA 58.372 29.630 0.54 0.00 45.56 0.98
5089 7773 8.164058 TGATCGATGCCAAAACATCAATTATA 57.836 30.769 0.54 0.00 45.56 0.98
5090 7774 7.041635 TGATCGATGCCAAAACATCAATTAT 57.958 32.000 0.54 0.00 45.56 1.28
5091 7775 6.448207 TGATCGATGCCAAAACATCAATTA 57.552 33.333 0.54 0.00 45.56 1.40
5092 7776 5.327616 TGATCGATGCCAAAACATCAATT 57.672 34.783 0.54 0.00 45.56 2.32
5093 7777 4.987408 TGATCGATGCCAAAACATCAAT 57.013 36.364 0.54 0.00 45.56 2.57
5094 7778 4.158209 ACATGATCGATGCCAAAACATCAA 59.842 37.500 0.54 0.00 45.56 2.57
5095 7779 3.695556 ACATGATCGATGCCAAAACATCA 59.304 39.130 0.54 0.00 45.56 3.07
5096 7780 4.297299 ACATGATCGATGCCAAAACATC 57.703 40.909 0.54 0.00 42.52 3.06
5097 7781 4.724074 AACATGATCGATGCCAAAACAT 57.276 36.364 0.54 0.00 35.15 2.71
5098 7782 4.517952 AAACATGATCGATGCCAAAACA 57.482 36.364 0.54 0.00 35.15 2.83
5099 7783 4.327087 GGAAAACATGATCGATGCCAAAAC 59.673 41.667 0.54 0.00 35.15 2.43
5100 7784 4.021632 TGGAAAACATGATCGATGCCAAAA 60.022 37.500 0.54 0.00 35.15 2.44
5101 7785 3.509184 TGGAAAACATGATCGATGCCAAA 59.491 39.130 0.54 0.00 35.15 3.28
5102 7786 3.087781 TGGAAAACATGATCGATGCCAA 58.912 40.909 0.54 0.00 35.15 4.52
5103 7787 2.720915 TGGAAAACATGATCGATGCCA 58.279 42.857 0.54 0.00 35.15 4.92
5104 7788 3.781079 TTGGAAAACATGATCGATGCC 57.219 42.857 0.54 0.00 35.15 4.40
5105 7789 7.489113 AGTTATTTTGGAAAACATGATCGATGC 59.511 33.333 0.54 0.00 35.15 3.91
5106 7790 8.800972 CAGTTATTTTGGAAAACATGATCGATG 58.199 33.333 0.54 0.00 38.15 3.84
5107 7791 8.739039 TCAGTTATTTTGGAAAACATGATCGAT 58.261 29.630 0.00 0.00 0.00 3.59
5108 7792 8.105097 TCAGTTATTTTGGAAAACATGATCGA 57.895 30.769 0.00 0.00 0.00 3.59
5121 7805 4.019174 AGCCAGGACATCAGTTATTTTGG 58.981 43.478 0.00 0.00 0.00 3.28
5134 7818 1.595993 GAGTACGCTGAGCCAGGACA 61.596 60.000 0.00 0.00 31.21 4.02
5138 7822 1.073216 CGTTGAGTACGCTGAGCCAG 61.073 60.000 0.00 0.00 44.26 4.85
5149 7833 2.005370 AGTCTGGAACCCGTTGAGTA 57.995 50.000 0.00 0.00 0.00 2.59
5173 7857 3.178618 CGTCTGCGAAGATGTTAGAATCG 59.821 47.826 4.25 0.00 41.33 3.34
5188 7872 1.256376 GTATGCTGATGTTCGTCTGCG 59.744 52.381 15.32 0.00 43.48 5.18
5202 7886 1.762957 ACCTAGCCAATGACGTATGCT 59.237 47.619 0.00 0.00 36.11 3.79
5203 7887 1.867233 CACCTAGCCAATGACGTATGC 59.133 52.381 0.00 0.00 0.00 3.14
5205 7889 2.500098 ACACACCTAGCCAATGACGTAT 59.500 45.455 0.00 0.00 0.00 3.06
5207 7891 0.685097 ACACACCTAGCCAATGACGT 59.315 50.000 0.00 0.00 0.00 4.34
5208 7892 1.078709 CACACACCTAGCCAATGACG 58.921 55.000 0.00 0.00 0.00 4.35
5209 7893 2.472695 TCACACACCTAGCCAATGAC 57.527 50.000 0.00 0.00 0.00 3.06
5210 7894 4.707105 CATATCACACACCTAGCCAATGA 58.293 43.478 0.00 0.00 0.00 2.57
5211 7895 3.251729 GCATATCACACACCTAGCCAATG 59.748 47.826 0.00 0.00 0.00 2.82
5212 7896 3.117926 TGCATATCACACACCTAGCCAAT 60.118 43.478 0.00 0.00 0.00 3.16
5215 7928 2.620251 TGCATATCACACACCTAGCC 57.380 50.000 0.00 0.00 0.00 3.93
5218 7931 4.817318 TGTCTTGCATATCACACACCTA 57.183 40.909 0.00 0.00 0.00 3.08
5222 7935 3.281158 CCCATGTCTTGCATATCACACA 58.719 45.455 0.00 0.00 35.74 3.72
5251 7966 3.181441 GGTGTAGGGTTTTGGGTCTACAA 60.181 47.826 0.00 0.00 42.17 2.41
5323 8038 0.173481 TTGGAGAGCAACGATCCTCG 59.827 55.000 0.00 0.00 46.93 4.63
5328 8043 2.768253 TCATGTTGGAGAGCAACGAT 57.232 45.000 0.00 0.00 35.47 3.73
5356 8071 5.449553 ACATCTCTCCCTTGTTCTTGTTTT 58.550 37.500 0.00 0.00 0.00 2.43
5368 8083 2.424523 CCTACCCGTTACATCTCTCCCT 60.425 54.545 0.00 0.00 0.00 4.20
5369 8084 1.962100 CCTACCCGTTACATCTCTCCC 59.038 57.143 0.00 0.00 0.00 4.30
5370 8085 2.885894 CTCCTACCCGTTACATCTCTCC 59.114 54.545 0.00 0.00 0.00 3.71
5371 8086 3.818180 TCTCCTACCCGTTACATCTCTC 58.182 50.000 0.00 0.00 0.00 3.20
5372 8087 3.947612 TCTCCTACCCGTTACATCTCT 57.052 47.619 0.00 0.00 0.00 3.10
5373 8088 4.996788 TTTCTCCTACCCGTTACATCTC 57.003 45.455 0.00 0.00 0.00 2.75
5374 8089 5.247792 ACTTTTTCTCCTACCCGTTACATCT 59.752 40.000 0.00 0.00 0.00 2.90
5375 8090 5.485620 ACTTTTTCTCCTACCCGTTACATC 58.514 41.667 0.00 0.00 0.00 3.06
5376 8091 5.494390 ACTTTTTCTCCTACCCGTTACAT 57.506 39.130 0.00 0.00 0.00 2.29
5377 8092 4.961438 ACTTTTTCTCCTACCCGTTACA 57.039 40.909 0.00 0.00 0.00 2.41
5378 8093 4.453478 CCAACTTTTTCTCCTACCCGTTAC 59.547 45.833 0.00 0.00 0.00 2.50
5379 8094 4.644498 CCAACTTTTTCTCCTACCCGTTA 58.356 43.478 0.00 0.00 0.00 3.18
5380 8095 3.483421 CCAACTTTTTCTCCTACCCGTT 58.517 45.455 0.00 0.00 0.00 4.44
5381 8096 2.812983 GCCAACTTTTTCTCCTACCCGT 60.813 50.000 0.00 0.00 0.00 5.28
5382 8097 1.810755 GCCAACTTTTTCTCCTACCCG 59.189 52.381 0.00 0.00 0.00 5.28
5383 8098 3.082548 GAGCCAACTTTTTCTCCTACCC 58.917 50.000 0.00 0.00 0.00 3.69
5384 8099 3.082548 GGAGCCAACTTTTTCTCCTACC 58.917 50.000 0.00 0.00 41.35 3.18
5385 8100 3.082548 GGGAGCCAACTTTTTCTCCTAC 58.917 50.000 7.03 0.00 43.46 3.18
5386 8101 2.041216 GGGGAGCCAACTTTTTCTCCTA 59.959 50.000 7.03 0.00 43.46 2.94
5387 8102 1.203063 GGGGAGCCAACTTTTTCTCCT 60.203 52.381 7.03 0.00 43.46 3.69
5388 8103 1.257743 GGGGAGCCAACTTTTTCTCC 58.742 55.000 0.00 0.00 43.27 3.71
5389 8104 0.881796 CGGGGAGCCAACTTTTTCTC 59.118 55.000 0.00 0.00 0.00 2.87
5390 8105 1.179174 GCGGGGAGCCAACTTTTTCT 61.179 55.000 0.00 0.00 40.81 2.52
5391 8106 1.289066 GCGGGGAGCCAACTTTTTC 59.711 57.895 0.00 0.00 40.81 2.29
5392 8107 3.455152 GCGGGGAGCCAACTTTTT 58.545 55.556 0.00 0.00 40.81 1.94
5411 8126 5.886713 GGACCAACCTAGGGTAGCCCATA 62.887 56.522 14.81 0.00 40.10 2.74
5414 8129 1.343431 GGACCAACCTAGGGTAGCCC 61.343 65.000 14.81 0.00 39.19 5.19
5415 8130 0.619543 TGGACCAACCTAGGGTAGCC 60.620 60.000 14.81 9.21 39.19 3.93
5416 8131 1.282382 TTGGACCAACCTAGGGTAGC 58.718 55.000 14.81 0.00 39.19 3.58
5417 8132 2.102588 CGATTGGACCAACCTAGGGTAG 59.897 54.545 14.81 1.05 39.19 3.18
5418 8133 2.112998 CGATTGGACCAACCTAGGGTA 58.887 52.381 14.81 0.00 39.19 3.69
5419 8134 0.909623 CGATTGGACCAACCTAGGGT 59.090 55.000 14.81 2.44 42.61 4.34
5420 8135 0.463833 GCGATTGGACCAACCTAGGG 60.464 60.000 14.81 0.00 39.86 3.53
5421 8136 0.463833 GGCGATTGGACCAACCTAGG 60.464 60.000 9.67 7.41 39.86 3.02
5422 8137 0.541863 AGGCGATTGGACCAACCTAG 59.458 55.000 9.67 2.50 39.86 3.02
5423 8138 0.988832 AAGGCGATTGGACCAACCTA 59.011 50.000 9.67 0.00 39.86 3.08
5424 8139 0.609131 CAAGGCGATTGGACCAACCT 60.609 55.000 9.67 9.10 39.86 3.50
5425 8140 0.608035 TCAAGGCGATTGGACCAACC 60.608 55.000 9.67 6.66 39.54 3.77
5426 8141 0.804989 CTCAAGGCGATTGGACCAAC 59.195 55.000 9.67 2.97 39.54 3.77
5427 8142 0.322456 CCTCAAGGCGATTGGACCAA 60.322 55.000 9.92 9.92 39.54 3.67
5428 8143 1.198094 TCCTCAAGGCGATTGGACCA 61.198 55.000 0.00 0.00 39.54 4.02
5429 8144 0.181350 ATCCTCAAGGCGATTGGACC 59.819 55.000 0.00 0.00 39.54 4.46
5430 8145 1.587547 GATCCTCAAGGCGATTGGAC 58.412 55.000 0.00 0.00 39.54 4.02
5431 8146 0.104855 CGATCCTCAAGGCGATTGGA 59.895 55.000 0.00 0.00 39.54 3.53
5432 8147 0.179073 ACGATCCTCAAGGCGATTGG 60.179 55.000 3.53 0.00 39.54 3.16
5433 8148 1.328680 CAACGATCCTCAAGGCGATTG 59.671 52.381 3.53 0.00 40.52 2.67
5434 8149 1.656652 CAACGATCCTCAAGGCGATT 58.343 50.000 3.53 0.00 34.44 3.34
5435 8150 0.811616 GCAACGATCCTCAAGGCGAT 60.812 55.000 3.53 0.00 34.44 4.58
5436 8151 1.447838 GCAACGATCCTCAAGGCGA 60.448 57.895 3.53 0.00 34.44 5.54
5437 8152 1.424493 GAGCAACGATCCTCAAGGCG 61.424 60.000 0.00 0.00 34.44 5.52
5438 8153 0.107945 AGAGCAACGATCCTCAAGGC 60.108 55.000 0.00 0.00 34.44 4.35
5439 8154 1.472376 GGAGAGCAACGATCCTCAAGG 60.472 57.143 0.00 0.00 0.00 3.61
5440 8155 1.205655 TGGAGAGCAACGATCCTCAAG 59.794 52.381 0.00 0.00 34.04 3.02
5441 8156 1.266178 TGGAGAGCAACGATCCTCAA 58.734 50.000 0.00 0.00 34.04 3.02
5442 8157 1.066858 GTTGGAGAGCAACGATCCTCA 60.067 52.381 0.00 0.00 34.04 3.86
5443 8158 1.066858 TGTTGGAGAGCAACGATCCTC 60.067 52.381 0.00 0.00 35.47 3.71
5444 8159 0.976641 TGTTGGAGAGCAACGATCCT 59.023 50.000 0.00 0.00 35.47 3.24
5445 8160 1.667724 CATGTTGGAGAGCAACGATCC 59.332 52.381 0.00 0.00 35.47 3.36
5446 8161 2.621338 TCATGTTGGAGAGCAACGATC 58.379 47.619 0.00 0.00 35.47 3.69
5447 8162 2.768253 TCATGTTGGAGAGCAACGAT 57.232 45.000 0.00 0.00 35.47 3.73
5448 8163 2.037121 TCTTCATGTTGGAGAGCAACGA 59.963 45.455 0.00 0.00 35.47 3.85
5449 8164 2.416747 TCTTCATGTTGGAGAGCAACG 58.583 47.619 0.00 0.00 35.47 4.10
5450 8165 3.364366 CGTTCTTCATGTTGGAGAGCAAC 60.364 47.826 0.00 0.00 0.00 4.17
5451 8166 2.807967 CGTTCTTCATGTTGGAGAGCAA 59.192 45.455 0.00 0.00 0.00 3.91
5452 8167 2.037121 TCGTTCTTCATGTTGGAGAGCA 59.963 45.455 0.00 0.00 0.00 4.26
5453 8168 2.670414 CTCGTTCTTCATGTTGGAGAGC 59.330 50.000 0.00 0.00 0.00 4.09
5454 8169 4.179926 TCTCGTTCTTCATGTTGGAGAG 57.820 45.455 0.00 0.00 0.00 3.20
5455 8170 4.600692 TTCTCGTTCTTCATGTTGGAGA 57.399 40.909 0.00 0.00 0.00 3.71
5456 8171 5.007626 TGTTTTCTCGTTCTTCATGTTGGAG 59.992 40.000 0.00 0.00 0.00 3.86
5457 8172 4.878971 TGTTTTCTCGTTCTTCATGTTGGA 59.121 37.500 0.00 0.00 0.00 3.53
5458 8173 5.168526 TGTTTTCTCGTTCTTCATGTTGG 57.831 39.130 0.00 0.00 0.00 3.77
5459 8174 6.486248 TCTTGTTTTCTCGTTCTTCATGTTG 58.514 36.000 0.00 0.00 0.00 3.33
5460 8175 6.677781 TCTTGTTTTCTCGTTCTTCATGTT 57.322 33.333 0.00 0.00 0.00 2.71
5461 8176 6.093495 TGTTCTTGTTTTCTCGTTCTTCATGT 59.907 34.615 0.00 0.00 0.00 3.21
5462 8177 6.486248 TGTTCTTGTTTTCTCGTTCTTCATG 58.514 36.000 0.00 0.00 0.00 3.07
5463 8178 6.677781 TGTTCTTGTTTTCTCGTTCTTCAT 57.322 33.333 0.00 0.00 0.00 2.57
5464 8179 6.403200 CCTTGTTCTTGTTTTCTCGTTCTTCA 60.403 38.462 0.00 0.00 0.00 3.02
5465 8180 5.965918 CCTTGTTCTTGTTTTCTCGTTCTTC 59.034 40.000 0.00 0.00 0.00 2.87
5466 8181 5.163652 CCCTTGTTCTTGTTTTCTCGTTCTT 60.164 40.000 0.00 0.00 0.00 2.52
5467 8182 4.335594 CCCTTGTTCTTGTTTTCTCGTTCT 59.664 41.667 0.00 0.00 0.00 3.01
5468 8183 4.334481 TCCCTTGTTCTTGTTTTCTCGTTC 59.666 41.667 0.00 0.00 0.00 3.95
5469 8184 4.266714 TCCCTTGTTCTTGTTTTCTCGTT 58.733 39.130 0.00 0.00 0.00 3.85
5470 8185 3.877508 CTCCCTTGTTCTTGTTTTCTCGT 59.122 43.478 0.00 0.00 0.00 4.18
5471 8186 4.127171 TCTCCCTTGTTCTTGTTTTCTCG 58.873 43.478 0.00 0.00 0.00 4.04
5472 8187 5.368989 TCTCTCCCTTGTTCTTGTTTTCTC 58.631 41.667 0.00 0.00 0.00 2.87
5473 8188 5.373812 TCTCTCCCTTGTTCTTGTTTTCT 57.626 39.130 0.00 0.00 0.00 2.52
5474 8189 5.532779 ACATCTCTCCCTTGTTCTTGTTTTC 59.467 40.000 0.00 0.00 0.00 2.29
5475 8190 5.449553 ACATCTCTCCCTTGTTCTTGTTTT 58.550 37.500 0.00 0.00 0.00 2.43
5476 8191 5.053978 ACATCTCTCCCTTGTTCTTGTTT 57.946 39.130 0.00 0.00 0.00 2.83
5477 8192 4.713792 ACATCTCTCCCTTGTTCTTGTT 57.286 40.909 0.00 0.00 0.00 2.83
5478 8193 5.071788 TGTTACATCTCTCCCTTGTTCTTGT 59.928 40.000 0.00 0.00 0.00 3.16
5479 8194 5.551233 TGTTACATCTCTCCCTTGTTCTTG 58.449 41.667 0.00 0.00 0.00 3.02
5480 8195 5.280215 CCTGTTACATCTCTCCCTTGTTCTT 60.280 44.000 0.00 0.00 0.00 2.52
5481 8196 4.223923 CCTGTTACATCTCTCCCTTGTTCT 59.776 45.833 0.00 0.00 0.00 3.01
5482 8197 4.020128 ACCTGTTACATCTCTCCCTTGTTC 60.020 45.833 0.00 0.00 0.00 3.18
5483 8198 3.910627 ACCTGTTACATCTCTCCCTTGTT 59.089 43.478 0.00 0.00 0.00 2.83
5484 8199 3.521727 ACCTGTTACATCTCTCCCTTGT 58.478 45.455 0.00 0.00 0.00 3.16
5485 8200 4.100189 CCTACCTGTTACATCTCTCCCTTG 59.900 50.000 0.00 0.00 0.00 3.61
5486 8201 4.016479 TCCTACCTGTTACATCTCTCCCTT 60.016 45.833 0.00 0.00 0.00 3.95
5487 8202 3.532232 TCCTACCTGTTACATCTCTCCCT 59.468 47.826 0.00 0.00 0.00 4.20
5494 8209 7.094762 CCAACTTTTTCTCCTACCTGTTACATC 60.095 40.741 0.00 0.00 0.00 3.06
5501 8216 3.753797 GAGCCAACTTTTTCTCCTACCTG 59.246 47.826 0.00 0.00 0.00 4.00
5503 8218 3.753797 CAGAGCCAACTTTTTCTCCTACC 59.246 47.826 0.00 0.00 0.00 3.18
5518 8233 2.046023 CAATGCCGACCAGAGCCA 60.046 61.111 0.00 0.00 0.00 4.75
5520 8235 3.512516 GGCAATGCCGACCAGAGC 61.513 66.667 9.14 0.00 39.62 4.09
5558 8324 2.525248 CGCAATGACGATGACGGGG 61.525 63.158 0.00 0.00 44.46 5.73
5560 8326 1.482621 CCTCGCAATGACGATGACGG 61.483 60.000 0.00 0.00 42.02 4.79
5565 8331 0.744414 CCAACCCTCGCAATGACGAT 60.744 55.000 0.00 0.00 42.02 3.73
5575 8341 1.460273 CCCAACAAACCCAACCCTCG 61.460 60.000 0.00 0.00 0.00 4.63
5593 8359 3.112580 CAATGACGAACAACAACAACCC 58.887 45.455 0.00 0.00 0.00 4.11
5606 8372 0.893270 CCCAACCCTTGCAATGACGA 60.893 55.000 0.00 0.00 0.00 4.20
5607 8373 1.178534 ACCCAACCCTTGCAATGACG 61.179 55.000 0.00 0.00 0.00 4.35
5608 8374 1.047801 AACCCAACCCTTGCAATGAC 58.952 50.000 0.00 0.00 0.00 3.06
5609 8375 1.415659 CAAACCCAACCCTTGCAATGA 59.584 47.619 0.00 0.00 0.00 2.57
5610 8376 1.140652 ACAAACCCAACCCTTGCAATG 59.859 47.619 0.00 0.00 0.00 2.82
5611 8377 1.506025 ACAAACCCAACCCTTGCAAT 58.494 45.000 0.00 0.00 0.00 3.56
5612 8378 1.065854 CAACAAACCCAACCCTTGCAA 60.066 47.619 0.00 0.00 0.00 4.08
5613 8379 0.539051 CAACAAACCCAACCCTTGCA 59.461 50.000 0.00 0.00 0.00 4.08
5614 8380 0.179059 CCAACAAACCCAACCCTTGC 60.179 55.000 0.00 0.00 0.00 4.01
5615 8381 0.467804 CCCAACAAACCCAACCCTTG 59.532 55.000 0.00 0.00 0.00 3.61
5616 8382 0.692756 CCCCAACAAACCCAACCCTT 60.693 55.000 0.00 0.00 0.00 3.95
5617 8383 1.074850 CCCCAACAAACCCAACCCT 60.075 57.895 0.00 0.00 0.00 4.34
5618 8384 0.983905 AACCCCAACAAACCCAACCC 60.984 55.000 0.00 0.00 0.00 4.11
5619 8385 0.179234 CAACCCCAACAAACCCAACC 59.821 55.000 0.00 0.00 0.00 3.77
5620 8386 0.906066 ACAACCCCAACAAACCCAAC 59.094 50.000 0.00 0.00 0.00 3.77
5621 8387 1.279271 CAACAACCCCAACAAACCCAA 59.721 47.619 0.00 0.00 0.00 4.12
5622 8388 0.905357 CAACAACCCCAACAAACCCA 59.095 50.000 0.00 0.00 0.00 4.51
5623 8389 0.906066 ACAACAACCCCAACAAACCC 59.094 50.000 0.00 0.00 0.00 4.11
5624 8390 2.289756 ACAACAACAACCCCAACAAACC 60.290 45.455 0.00 0.00 0.00 3.27
5625 8391 3.046968 ACAACAACAACCCCAACAAAC 57.953 42.857 0.00 0.00 0.00 2.93
5626 8392 3.071023 TCAACAACAACAACCCCAACAAA 59.929 39.130 0.00 0.00 0.00 2.83
5627 8393 2.632996 TCAACAACAACAACCCCAACAA 59.367 40.909 0.00 0.00 0.00 2.83
5628 8394 2.232452 CTCAACAACAACAACCCCAACA 59.768 45.455 0.00 0.00 0.00 3.33
5629 8395 2.887337 CTCAACAACAACAACCCCAAC 58.113 47.619 0.00 0.00 0.00 3.77
5630 8396 1.205893 GCTCAACAACAACAACCCCAA 59.794 47.619 0.00 0.00 0.00 4.12
5631 8397 0.820871 GCTCAACAACAACAACCCCA 59.179 50.000 0.00 0.00 0.00 4.96
5632 8398 0.820871 TGCTCAACAACAACAACCCC 59.179 50.000 0.00 0.00 0.00 4.95
5633 8399 1.476488 ACTGCTCAACAACAACAACCC 59.524 47.619 0.00 0.00 0.00 4.11
5634 8400 2.094752 ACACTGCTCAACAACAACAACC 60.095 45.455 0.00 0.00 0.00 3.77
5635 8401 2.916716 CACACTGCTCAACAACAACAAC 59.083 45.455 0.00 0.00 0.00 3.32
5636 8402 2.094803 CCACACTGCTCAACAACAACAA 60.095 45.455 0.00 0.00 0.00 2.83
5637 8403 1.472082 CCACACTGCTCAACAACAACA 59.528 47.619 0.00 0.00 0.00 3.33
5638 8404 1.798813 GCCACACTGCTCAACAACAAC 60.799 52.381 0.00 0.00 0.00 3.32
5639 8405 0.455410 GCCACACTGCTCAACAACAA 59.545 50.000 0.00 0.00 0.00 2.83
5640 8406 0.394216 AGCCACACTGCTCAACAACA 60.394 50.000 0.00 0.00 36.75 3.33
5641 8407 0.740737 AAGCCACACTGCTCAACAAC 59.259 50.000 0.00 0.00 41.80 3.32
5642 8408 0.740149 CAAGCCACACTGCTCAACAA 59.260 50.000 0.00 0.00 41.80 2.83
5643 8409 1.727511 GCAAGCCACACTGCTCAACA 61.728 55.000 0.00 0.00 41.80 3.33
5644 8410 1.008079 GCAAGCCACACTGCTCAAC 60.008 57.895 0.00 0.00 41.80 3.18
5645 8411 0.752743 AAGCAAGCCACACTGCTCAA 60.753 50.000 0.00 0.00 41.80 3.02
5653 8419 1.202989 TGGGTCATTAAGCAAGCCACA 60.203 47.619 2.33 0.00 35.74 4.17
5654 8420 1.544724 TGGGTCATTAAGCAAGCCAC 58.455 50.000 2.33 0.00 35.74 5.01
5686 8452 0.598065 GAACAACCATGCTCCACACC 59.402 55.000 0.00 0.00 0.00 4.16
5687 8453 1.267806 CTGAACAACCATGCTCCACAC 59.732 52.381 0.00 0.00 0.00 3.82
5693 8459 3.276857 CTCATAGCTGAACAACCATGCT 58.723 45.455 0.00 0.00 37.72 3.79
5700 8466 6.494842 GTTTCAACAACTCATAGCTGAACAA 58.505 36.000 0.00 0.00 0.00 2.83
5707 8473 2.414161 GGGCGTTTCAACAACTCATAGC 60.414 50.000 0.00 0.00 0.00 2.97
5726 8492 1.066303 GAGATATAGCCGCATCGAGGG 59.934 57.143 0.00 0.00 0.00 4.30
5727 8493 1.066303 GGAGATATAGCCGCATCGAGG 59.934 57.143 0.00 0.00 0.00 4.63
5728 8494 1.066303 GGGAGATATAGCCGCATCGAG 59.934 57.143 0.00 0.00 0.00 4.04
5729 8495 1.103803 GGGAGATATAGCCGCATCGA 58.896 55.000 0.00 0.00 0.00 3.59
5730 8496 0.817654 TGGGAGATATAGCCGCATCG 59.182 55.000 0.00 0.00 0.00 3.84
5731 8497 1.469940 CGTGGGAGATATAGCCGCATC 60.470 57.143 0.00 0.00 0.00 3.91
5732 8498 0.532573 CGTGGGAGATATAGCCGCAT 59.467 55.000 0.00 0.00 0.00 4.73
5733 8499 0.826256 ACGTGGGAGATATAGCCGCA 60.826 55.000 0.00 0.00 0.00 5.69
5734 8500 0.388649 CACGTGGGAGATATAGCCGC 60.389 60.000 7.95 0.00 0.00 6.53
5735 8501 0.959553 ACACGTGGGAGATATAGCCG 59.040 55.000 21.57 0.00 0.00 5.52
5736 8502 1.068472 CGACACGTGGGAGATATAGCC 60.068 57.143 21.57 0.00 0.00 3.93
5737 8503 1.878088 TCGACACGTGGGAGATATAGC 59.122 52.381 21.57 0.00 0.00 2.97
5738 8504 3.609644 GCTTCGACACGTGGGAGATATAG 60.610 52.174 21.57 11.01 0.00 1.31
5739 8505 2.292569 GCTTCGACACGTGGGAGATATA 59.707 50.000 21.57 0.63 0.00 0.86
5740 8506 1.067212 GCTTCGACACGTGGGAGATAT 59.933 52.381 21.57 0.00 0.00 1.63
5741 8507 0.454600 GCTTCGACACGTGGGAGATA 59.545 55.000 21.57 1.34 0.00 1.98
5742 8508 1.215647 GCTTCGACACGTGGGAGAT 59.784 57.895 21.57 0.00 0.00 2.75
5743 8509 2.197605 TGCTTCGACACGTGGGAGA 61.198 57.895 21.57 12.82 0.00 3.71
5744 8510 2.022129 GTGCTTCGACACGTGGGAG 61.022 63.158 21.57 8.15 0.00 4.30
5745 8511 2.028484 GTGCTTCGACACGTGGGA 59.972 61.111 21.57 13.88 0.00 4.37
5754 8520 0.170561 GCCTCTAAGTCGTGCTTCGA 59.829 55.000 0.92 0.92 46.83 3.71
5755 8521 0.109272 TGCCTCTAAGTCGTGCTTCG 60.109 55.000 0.00 0.00 38.57 3.79
5756 8522 2.301577 ATGCCTCTAAGTCGTGCTTC 57.698 50.000 0.00 0.00 38.57 3.86
5757 8523 3.522553 GTTATGCCTCTAAGTCGTGCTT 58.477 45.455 0.00 1.30 41.05 3.91
5758 8524 2.159085 GGTTATGCCTCTAAGTCGTGCT 60.159 50.000 0.00 0.00 0.00 4.40
5759 8525 2.202566 GGTTATGCCTCTAAGTCGTGC 58.797 52.381 0.00 0.00 0.00 5.34
5760 8526 2.460918 CGGTTATGCCTCTAAGTCGTG 58.539 52.381 0.00 0.00 34.25 4.35
5761 8527 1.202382 GCGGTTATGCCTCTAAGTCGT 60.202 52.381 0.00 0.00 34.25 4.34
5762 8528 1.202371 TGCGGTTATGCCTCTAAGTCG 60.202 52.381 0.00 0.00 34.25 4.18
5763 8529 2.596904 TGCGGTTATGCCTCTAAGTC 57.403 50.000 0.00 0.00 34.25 3.01
5764 8530 3.118408 TCAATGCGGTTATGCCTCTAAGT 60.118 43.478 0.00 0.00 34.25 2.24
5765 8531 3.466836 TCAATGCGGTTATGCCTCTAAG 58.533 45.455 0.00 0.00 34.25 2.18
5766 8532 3.552132 TCAATGCGGTTATGCCTCTAA 57.448 42.857 0.00 0.00 34.25 2.10
5767 8533 3.552132 TTCAATGCGGTTATGCCTCTA 57.448 42.857 0.00 0.00 34.25 2.43
5768 8534 2.418368 TTCAATGCGGTTATGCCTCT 57.582 45.000 0.00 0.00 34.25 3.69
5769 8535 2.796032 GCTTTCAATGCGGTTATGCCTC 60.796 50.000 0.00 0.00 34.25 4.70
5770 8536 1.134946 GCTTTCAATGCGGTTATGCCT 59.865 47.619 0.00 0.00 34.25 4.75
5771 8537 1.135141 TGCTTTCAATGCGGTTATGCC 60.135 47.619 0.00 0.00 0.00 4.40
5772 8538 2.276472 TGCTTTCAATGCGGTTATGC 57.724 45.000 0.00 0.00 0.00 3.14
5782 8548 3.004629 TCACTTGCGACATTGCTTTCAAT 59.995 39.130 0.00 0.00 43.31 2.57
5783 8549 2.357323 TCACTTGCGACATTGCTTTCAA 59.643 40.909 0.00 0.00 36.51 2.69
5784 8550 1.946081 TCACTTGCGACATTGCTTTCA 59.054 42.857 0.00 0.00 35.36 2.69
5785 8551 2.578495 CTCACTTGCGACATTGCTTTC 58.422 47.619 0.00 0.00 35.36 2.62
5786 8552 1.267806 CCTCACTTGCGACATTGCTTT 59.732 47.619 0.00 0.00 35.36 3.51
5787 8553 0.877071 CCTCACTTGCGACATTGCTT 59.123 50.000 0.00 0.00 35.36 3.91
5788 8554 0.250467 ACCTCACTTGCGACATTGCT 60.250 50.000 0.00 0.00 35.36 3.91
5789 8555 1.438651 TACCTCACTTGCGACATTGC 58.561 50.000 0.00 0.00 0.00 3.56
5790 8556 3.935203 AGATTACCTCACTTGCGACATTG 59.065 43.478 0.00 0.00 0.00 2.82
5791 8557 4.207891 AGATTACCTCACTTGCGACATT 57.792 40.909 0.00 0.00 0.00 2.71
5792 8558 3.895232 AGATTACCTCACTTGCGACAT 57.105 42.857 0.00 0.00 0.00 3.06
5793 8559 3.006430 TGAAGATTACCTCACTTGCGACA 59.994 43.478 0.00 0.00 0.00 4.35
5794 8560 3.368236 GTGAAGATTACCTCACTTGCGAC 59.632 47.826 0.00 0.00 0.00 5.19
5795 8561 3.006430 TGTGAAGATTACCTCACTTGCGA 59.994 43.478 4.07 0.00 34.51 5.10
5796 8562 3.123621 GTGTGAAGATTACCTCACTTGCG 59.876 47.826 4.07 0.00 34.51 4.85
5797 8563 4.065088 TGTGTGAAGATTACCTCACTTGC 58.935 43.478 4.07 0.00 34.51 4.01
5798 8564 5.049405 GGTTGTGTGAAGATTACCTCACTTG 60.049 44.000 4.07 0.00 34.51 3.16
5799 8565 5.063880 GGTTGTGTGAAGATTACCTCACTT 58.936 41.667 4.07 0.00 34.51 3.16
5800 8566 4.505039 GGGTTGTGTGAAGATTACCTCACT 60.505 45.833 4.07 0.00 34.51 3.41
5801 8567 3.751698 GGGTTGTGTGAAGATTACCTCAC 59.248 47.826 0.00 0.00 0.00 3.51
5802 8568 3.392947 TGGGTTGTGTGAAGATTACCTCA 59.607 43.478 0.00 0.00 0.00 3.86
5803 8569 4.015872 TGGGTTGTGTGAAGATTACCTC 57.984 45.455 0.00 0.00 0.00 3.85
5804 8570 4.202567 ACATGGGTTGTGTGAAGATTACCT 60.203 41.667 0.00 0.00 37.11 3.08
5805 8571 4.079253 ACATGGGTTGTGTGAAGATTACC 58.921 43.478 0.00 0.00 37.11 2.85
5806 8572 6.811253 TTACATGGGTTGTGTGAAGATTAC 57.189 37.500 0.00 0.00 39.48 1.89
5807 8573 8.103935 TGTATTACATGGGTTGTGTGAAGATTA 58.896 33.333 0.00 0.00 39.48 1.75
5808 8574 6.945435 TGTATTACATGGGTTGTGTGAAGATT 59.055 34.615 0.00 0.00 39.48 2.40
5809 8575 6.480763 TGTATTACATGGGTTGTGTGAAGAT 58.519 36.000 0.00 0.00 39.48 2.40
5810 8576 5.870706 TGTATTACATGGGTTGTGTGAAGA 58.129 37.500 0.00 0.00 39.48 2.87
5811 8577 6.757897 ATGTATTACATGGGTTGTGTGAAG 57.242 37.500 8.51 0.00 37.45 3.02
5812 8578 7.338196 CCTTATGTATTACATGGGTTGTGTGAA 59.662 37.037 17.68 1.51 39.53 3.18
5813 8579 6.826231 CCTTATGTATTACATGGGTTGTGTGA 59.174 38.462 17.68 0.00 39.53 3.58
5814 8580 6.039270 CCCTTATGTATTACATGGGTTGTGTG 59.961 42.308 17.68 4.59 39.53 3.82
5815 8581 6.069323 TCCCTTATGTATTACATGGGTTGTGT 60.069 38.462 22.47 0.74 40.71 3.72
5816 8582 6.361433 TCCCTTATGTATTACATGGGTTGTG 58.639 40.000 22.47 11.74 40.71 3.33
5817 8583 6.584471 TCCCTTATGTATTACATGGGTTGT 57.416 37.500 22.47 1.91 40.71 3.32
5818 8584 7.777910 TCTTTCCCTTATGTATTACATGGGTTG 59.222 37.037 22.47 16.30 40.71 3.77
5819 8585 7.878495 TCTTTCCCTTATGTATTACATGGGTT 58.122 34.615 22.47 3.08 40.71 4.11
5820 8586 7.128883 ACTCTTTCCCTTATGTATTACATGGGT 59.871 37.037 22.47 8.42 40.71 4.51
5821 8587 7.518188 ACTCTTTCCCTTATGTATTACATGGG 58.482 38.462 19.48 19.48 41.04 4.00
5822 8588 8.980481 AACTCTTTCCCTTATGTATTACATGG 57.020 34.615 17.68 11.61 39.53 3.66
5831 8597 9.449719 CAAACTATGTAACTCTTTCCCTTATGT 57.550 33.333 0.00 0.00 0.00 2.29
5832 8598 8.398665 GCAAACTATGTAACTCTTTCCCTTATG 58.601 37.037 0.00 0.00 0.00 1.90
5833 8599 8.329502 AGCAAACTATGTAACTCTTTCCCTTAT 58.670 33.333 0.00 0.00 0.00 1.73
5834 8600 7.686434 AGCAAACTATGTAACTCTTTCCCTTA 58.314 34.615 0.00 0.00 0.00 2.69
5835 8601 6.543735 AGCAAACTATGTAACTCTTTCCCTT 58.456 36.000 0.00 0.00 0.00 3.95
5836 8602 6.128138 AGCAAACTATGTAACTCTTTCCCT 57.872 37.500 0.00 0.00 0.00 4.20
5837 8603 6.819397 AAGCAAACTATGTAACTCTTTCCC 57.181 37.500 0.00 0.00 0.00 3.97
5838 8604 8.319143 TGTAAGCAAACTATGTAACTCTTTCC 57.681 34.615 0.00 0.00 0.00 3.13
5841 8607 8.656849 CGATTGTAAGCAAACTATGTAACTCTT 58.343 33.333 0.00 0.00 38.21 2.85
5842 8608 7.201530 GCGATTGTAAGCAAACTATGTAACTCT 60.202 37.037 0.00 0.00 38.21 3.24
5843 8609 6.900299 GCGATTGTAAGCAAACTATGTAACTC 59.100 38.462 0.00 0.00 38.21 3.01
5844 8610 6.183360 GGCGATTGTAAGCAAACTATGTAACT 60.183 38.462 0.00 0.00 38.21 2.24
5845 8611 5.963586 GGCGATTGTAAGCAAACTATGTAAC 59.036 40.000 0.00 0.00 38.21 2.50
5846 8612 5.644206 TGGCGATTGTAAGCAAACTATGTAA 59.356 36.000 0.00 0.00 38.21 2.41
5847 8613 5.064198 GTGGCGATTGTAAGCAAACTATGTA 59.936 40.000 0.00 0.00 38.21 2.29
5848 8614 4.006989 TGGCGATTGTAAGCAAACTATGT 58.993 39.130 0.00 0.00 38.21 2.29
5849 8615 4.094887 AGTGGCGATTGTAAGCAAACTATG 59.905 41.667 0.00 0.00 38.21 2.23
5850 8616 4.261801 AGTGGCGATTGTAAGCAAACTAT 58.738 39.130 0.00 0.00 38.21 2.12
5851 8617 3.670625 AGTGGCGATTGTAAGCAAACTA 58.329 40.909 0.00 0.00 38.21 2.24
5852 8618 2.504367 AGTGGCGATTGTAAGCAAACT 58.496 42.857 0.00 0.00 38.21 2.66
5853 8619 2.989422 AGTGGCGATTGTAAGCAAAC 57.011 45.000 0.00 0.00 38.21 2.93
5854 8620 3.552604 GAAGTGGCGATTGTAAGCAAA 57.447 42.857 0.00 0.00 38.21 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.