Multiple sequence alignment - TraesCS7A01G285100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G285100 chr7A 100.000 3329 0 0 1 3329 327304984 327308312 0.000000e+00 6148.0
1 TraesCS7A01G285100 chr7A 97.033 910 23 4 2421 3329 639984177 639983271 0.000000e+00 1528.0
2 TraesCS7A01G285100 chr7A 92.534 1018 48 4 1273 2264 639998985 639997970 0.000000e+00 1434.0
3 TraesCS7A01G285100 chr7A 80.189 318 46 13 2617 2923 512880042 512879731 4.320000e-54 222.0
4 TraesCS7A01G285100 chr7A 85.263 95 12 1 1241 1333 138609999 138609905 2.730000e-16 97.1
5 TraesCS7A01G285100 chr7A 97.826 46 1 0 2257 2302 639984223 639984178 2.750000e-11 80.5
6 TraesCS7A01G285100 chr2D 88.866 1913 106 26 1484 3329 632799296 632801168 0.000000e+00 2254.0
7 TraesCS7A01G285100 chr2D 90.121 496 42 5 2780 3269 643168709 643168215 3.620000e-179 638.0
8 TraesCS7A01G285100 chr6B 88.837 1487 139 14 1851 3329 354694728 354693261 0.000000e+00 1801.0
9 TraesCS7A01G285100 chr6B 90.514 253 24 0 1584 1836 156278284 156278536 5.320000e-88 335.0
10 TraesCS7A01G285100 chr3D 89.247 1395 121 19 1850 3228 265481288 265479907 0.000000e+00 1718.0
11 TraesCS7A01G285100 chr3D 88.614 202 15 2 541 742 405513322 405513515 4.290000e-59 239.0
12 TraesCS7A01G285100 chr4D 90.470 829 68 9 2509 3329 208179078 208178253 0.000000e+00 1083.0
13 TraesCS7A01G285100 chr4D 100.000 33 0 0 979 1011 417822515 417822483 9.970000e-06 62.1
14 TraesCS7A01G285100 chr7D 90.350 829 62 10 2509 3329 293956816 293957634 0.000000e+00 1072.0
15 TraesCS7A01G285100 chr7D 88.072 503 48 8 2774 3269 400408994 400409491 1.330000e-163 586.0
16 TraesCS7A01G285100 chr7D 90.000 130 9 4 531 657 340230850 340230722 7.390000e-37 165.0
17 TraesCS7A01G285100 chr7D 100.000 33 0 0 979 1011 340202006 340201974 9.970000e-06 62.1
18 TraesCS7A01G285100 chr6D 89.655 725 56 13 531 1243 436502245 436501528 0.000000e+00 905.0
19 TraesCS7A01G285100 chr6D 88.911 496 43 9 2780 3269 260751777 260752266 4.750000e-168 601.0
20 TraesCS7A01G285100 chr6D 94.355 248 13 1 1584 1830 81668153 81668400 2.420000e-101 379.0
21 TraesCS7A01G285100 chr6D 93.750 96 3 2 531 624 38479972 38480066 1.250000e-29 141.0
22 TraesCS7A01G285100 chr6D 91.935 62 5 0 982 1043 436501729 436501668 1.650000e-13 87.9
23 TraesCS7A01G285100 chr1A 87.900 719 71 6 531 1243 510301949 510301241 0.000000e+00 832.0
24 TraesCS7A01G285100 chr1A 93.333 75 5 0 704 778 374219084 374219010 9.760000e-21 111.0
25 TraesCS7A01G285100 chr1A 90.769 65 6 0 982 1046 510301442 510301378 1.650000e-13 87.9
26 TraesCS7A01G285100 chr5D 96.074 484 17 2 1 483 356985897 356986379 0.000000e+00 787.0
27 TraesCS7A01G285100 chr6A 90.625 256 23 1 1582 1836 98050072 98050327 4.110000e-89 339.0
28 TraesCS7A01G285100 chr2A 80.306 457 50 17 2629 3051 441275221 441274771 3.230000e-80 309.0
29 TraesCS7A01G285100 chr2A 90.090 111 9 2 531 639 429723106 429722996 3.460000e-30 143.0
30 TraesCS7A01G285100 chr5A 86.161 224 24 2 532 755 648901138 648901354 5.550000e-58 235.0
31 TraesCS7A01G285100 chr5A 87.059 85 8 3 1251 1333 210216953 210217036 3.540000e-15 93.5
32 TraesCS7A01G285100 chrUn 89.764 127 13 0 531 657 465328519 465328393 2.660000e-36 163.0
33 TraesCS7A01G285100 chr3A 93.684 95 6 0 531 625 712234328 712234234 3.460000e-30 143.0
34 TraesCS7A01G285100 chr7B 89.247 93 6 2 1243 1333 204338672 204338582 2.710000e-21 113.0
35 TraesCS7A01G285100 chr7B 87.500 96 11 1 1243 1338 277999397 277999303 3.510000e-20 110.0
36 TraesCS7A01G285100 chr2B 87.629 97 11 1 1243 1338 208777947 208777851 9.760000e-21 111.0
37 TraesCS7A01G285100 chr2B 88.172 93 9 2 1243 1334 599163290 599163199 3.510000e-20 110.0
38 TraesCS7A01G285100 chr2B 87.500 88 9 2 1247 1333 94782702 94782616 2.110000e-17 100.0
39 TraesCS7A01G285100 chr4A 86.170 94 10 3 1246 1338 439049544 439049453 7.600000e-17 99.0
40 TraesCS7A01G285100 chr1B 76.961 204 26 15 779 966 223858963 223858765 2.730000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G285100 chr7A 327304984 327308312 3328 False 6148.00 6148 100.0000 1 3329 1 chr7A.!!$F1 3328
1 TraesCS7A01G285100 chr7A 639997970 639998985 1015 True 1434.00 1434 92.5340 1273 2264 1 chr7A.!!$R3 991
2 TraesCS7A01G285100 chr7A 639983271 639984223 952 True 804.25 1528 97.4295 2257 3329 2 chr7A.!!$R4 1072
3 TraesCS7A01G285100 chr2D 632799296 632801168 1872 False 2254.00 2254 88.8660 1484 3329 1 chr2D.!!$F1 1845
4 TraesCS7A01G285100 chr6B 354693261 354694728 1467 True 1801.00 1801 88.8370 1851 3329 1 chr6B.!!$R1 1478
5 TraesCS7A01G285100 chr3D 265479907 265481288 1381 True 1718.00 1718 89.2470 1850 3228 1 chr3D.!!$R1 1378
6 TraesCS7A01G285100 chr4D 208178253 208179078 825 True 1083.00 1083 90.4700 2509 3329 1 chr4D.!!$R1 820
7 TraesCS7A01G285100 chr7D 293956816 293957634 818 False 1072.00 1072 90.3500 2509 3329 1 chr7D.!!$F1 820
8 TraesCS7A01G285100 chr6D 436501528 436502245 717 True 496.45 905 90.7950 531 1243 2 chr6D.!!$R1 712
9 TraesCS7A01G285100 chr1A 510301241 510301949 708 True 459.95 832 89.3345 531 1243 2 chr1A.!!$R2 712

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
227 228 0.035739 ACGCTGGGTAAAACCGATGT 59.964 50.0 0.0 0.0 39.83 3.06 F
506 507 0.181350 GATTCGGCTGGGGTGAGATT 59.819 55.0 0.0 0.0 0.00 2.40 F
510 511 0.462759 CGGCTGGGGTGAGATTCTTC 60.463 60.0 0.0 0.0 0.00 2.87 F
1658 1696 0.530870 CCGGCGAGGAAGAAGATTCC 60.531 60.0 9.3 0.0 45.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1388 1401 0.107848 GGTAGGTGGGGATGTGAACG 60.108 60.000 0.0 0.0 0.00 3.95 R
1411 1424 0.563173 ATCGAGGGGAGATTGGGAGA 59.437 55.000 0.0 0.0 0.00 3.71 R
1778 1816 1.904378 CTAGCCGCTCCTAGTCCCC 60.904 68.421 0.0 0.0 32.09 4.81 R
2996 3081 1.557832 TCACCCCTAACCTTCCGAATG 59.442 52.381 0.0 0.0 0.00 2.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 9.685276 TTATGTACAATTTCTTCTCATGGATGT 57.315 29.630 0.00 0.00 0.00 3.06
35 36 8.585471 ATGTACAATTTCTTCTCATGGATGTT 57.415 30.769 0.00 0.00 0.00 2.71
36 37 9.685276 ATGTACAATTTCTTCTCATGGATGTTA 57.315 29.630 0.00 0.00 0.00 2.41
37 38 9.513906 TGTACAATTTCTTCTCATGGATGTTAA 57.486 29.630 0.00 0.00 0.00 2.01
48 49 9.850198 TTCTCATGGATGTTAATTATCATGTCA 57.150 29.630 12.68 10.90 0.00 3.58
49 50 9.850198 TCTCATGGATGTTAATTATCATGTCAA 57.150 29.630 12.68 0.00 0.00 3.18
51 52 8.570488 TCATGGATGTTAATTATCATGTCAAGC 58.430 33.333 12.68 0.00 0.00 4.01
52 53 8.573885 CATGGATGTTAATTATCATGTCAAGCT 58.426 33.333 12.68 0.00 0.00 3.74
53 54 8.523915 TGGATGTTAATTATCATGTCAAGCTT 57.476 30.769 12.68 0.00 0.00 3.74
54 55 8.407832 TGGATGTTAATTATCATGTCAAGCTTG 58.592 33.333 20.81 20.81 0.00 4.01
55 56 8.623903 GGATGTTAATTATCATGTCAAGCTTGA 58.376 33.333 25.16 25.16 36.01 3.02
58 59 7.970061 TGTTAATTATCATGTCAAGCTTGAAGC 59.030 33.333 29.99 19.01 42.84 3.86
69 70 2.965477 GCTTGAAGCTCACACTCTTG 57.035 50.000 10.44 0.00 38.45 3.02
70 71 1.534595 GCTTGAAGCTCACACTCTTGG 59.465 52.381 10.44 0.00 38.45 3.61
71 72 2.808202 GCTTGAAGCTCACACTCTTGGA 60.808 50.000 10.44 0.00 38.45 3.53
72 73 2.827800 TGAAGCTCACACTCTTGGAG 57.172 50.000 0.00 0.00 35.52 3.86
73 74 2.319844 TGAAGCTCACACTCTTGGAGA 58.680 47.619 1.31 0.00 33.32 3.71
74 75 2.902486 TGAAGCTCACACTCTTGGAGAT 59.098 45.455 1.31 0.00 33.32 2.75
75 76 3.326006 TGAAGCTCACACTCTTGGAGATT 59.674 43.478 1.31 0.00 39.71 2.40
76 77 4.202398 TGAAGCTCACACTCTTGGAGATTT 60.202 41.667 1.31 0.00 37.40 2.17
77 78 4.363991 AGCTCACACTCTTGGAGATTTT 57.636 40.909 1.31 0.00 33.32 1.82
78 79 4.723309 AGCTCACACTCTTGGAGATTTTT 58.277 39.130 1.31 0.00 33.32 1.94
99 100 7.795482 TTTTTGTTTACGAGGAGAAATCAGA 57.205 32.000 0.00 0.00 0.00 3.27
100 101 7.421530 TTTTGTTTACGAGGAGAAATCAGAG 57.578 36.000 0.00 0.00 0.00 3.35
101 102 5.073311 TGTTTACGAGGAGAAATCAGAGG 57.927 43.478 0.00 0.00 0.00 3.69
102 103 4.527038 TGTTTACGAGGAGAAATCAGAGGT 59.473 41.667 0.00 0.00 0.00 3.85
103 104 5.011738 TGTTTACGAGGAGAAATCAGAGGTT 59.988 40.000 0.00 0.00 0.00 3.50
104 105 5.740290 TTACGAGGAGAAATCAGAGGTTT 57.260 39.130 0.00 0.00 0.00 3.27
105 106 3.931578 ACGAGGAGAAATCAGAGGTTTG 58.068 45.455 0.00 0.00 0.00 2.93
106 107 3.578716 ACGAGGAGAAATCAGAGGTTTGA 59.421 43.478 0.00 0.00 0.00 2.69
107 108 4.180057 CGAGGAGAAATCAGAGGTTTGAG 58.820 47.826 0.00 0.00 0.00 3.02
108 109 4.512484 GAGGAGAAATCAGAGGTTTGAGG 58.488 47.826 0.00 0.00 0.00 3.86
109 110 3.913163 AGGAGAAATCAGAGGTTTGAGGT 59.087 43.478 0.00 0.00 0.00 3.85
110 111 4.352298 AGGAGAAATCAGAGGTTTGAGGTT 59.648 41.667 0.00 0.00 0.00 3.50
111 112 4.697828 GGAGAAATCAGAGGTTTGAGGTTC 59.302 45.833 0.00 0.00 0.00 3.62
112 113 4.657013 AGAAATCAGAGGTTTGAGGTTCC 58.343 43.478 0.00 0.00 30.81 3.62
113 114 4.352298 AGAAATCAGAGGTTTGAGGTTCCT 59.648 41.667 0.00 0.00 30.81 3.36
114 115 4.731313 AATCAGAGGTTTGAGGTTCCTT 57.269 40.909 0.00 0.00 0.00 3.36
115 116 4.731313 ATCAGAGGTTTGAGGTTCCTTT 57.269 40.909 0.00 0.00 0.00 3.11
116 117 4.519906 TCAGAGGTTTGAGGTTCCTTTT 57.480 40.909 0.00 0.00 0.00 2.27
117 118 4.207165 TCAGAGGTTTGAGGTTCCTTTTG 58.793 43.478 0.00 0.00 0.00 2.44
118 119 3.954258 CAGAGGTTTGAGGTTCCTTTTGT 59.046 43.478 0.00 0.00 0.00 2.83
119 120 4.402474 CAGAGGTTTGAGGTTCCTTTTGTT 59.598 41.667 0.00 0.00 0.00 2.83
120 121 5.592688 CAGAGGTTTGAGGTTCCTTTTGTTA 59.407 40.000 0.00 0.00 0.00 2.41
121 122 5.593095 AGAGGTTTGAGGTTCCTTTTGTTAC 59.407 40.000 0.00 0.00 0.00 2.50
122 123 5.516044 AGGTTTGAGGTTCCTTTTGTTACT 58.484 37.500 0.00 0.00 0.00 2.24
123 124 5.359860 AGGTTTGAGGTTCCTTTTGTTACTG 59.640 40.000 0.00 0.00 0.00 2.74
124 125 5.126545 GGTTTGAGGTTCCTTTTGTTACTGT 59.873 40.000 0.00 0.00 0.00 3.55
125 126 6.319405 GGTTTGAGGTTCCTTTTGTTACTGTA 59.681 38.462 0.00 0.00 0.00 2.74
126 127 7.013942 GGTTTGAGGTTCCTTTTGTTACTGTAT 59.986 37.037 0.00 0.00 0.00 2.29
127 128 9.059260 GTTTGAGGTTCCTTTTGTTACTGTATA 57.941 33.333 0.00 0.00 0.00 1.47
128 129 8.842358 TTGAGGTTCCTTTTGTTACTGTATAG 57.158 34.615 0.00 0.00 0.00 1.31
129 130 7.970102 TGAGGTTCCTTTTGTTACTGTATAGT 58.030 34.615 0.00 0.00 40.99 2.12
130 131 8.434392 TGAGGTTCCTTTTGTTACTGTATAGTT 58.566 33.333 0.00 0.00 38.36 2.24
131 132 8.843885 AGGTTCCTTTTGTTACTGTATAGTTC 57.156 34.615 0.00 0.00 38.36 3.01
132 133 8.657712 AGGTTCCTTTTGTTACTGTATAGTTCT 58.342 33.333 0.00 0.00 38.36 3.01
133 134 8.933807 GGTTCCTTTTGTTACTGTATAGTTCTC 58.066 37.037 0.00 0.00 38.36 2.87
134 135 9.708092 GTTCCTTTTGTTACTGTATAGTTCTCT 57.292 33.333 0.00 0.00 38.36 3.10
135 136 9.924650 TTCCTTTTGTTACTGTATAGTTCTCTC 57.075 33.333 0.00 0.00 38.36 3.20
136 137 9.085645 TCCTTTTGTTACTGTATAGTTCTCTCA 57.914 33.333 0.00 0.00 38.36 3.27
137 138 9.877178 CCTTTTGTTACTGTATAGTTCTCTCAT 57.123 33.333 0.00 0.00 38.36 2.90
179 180 8.970691 ATTCAATTAGTTTTTGTTCTCATCGG 57.029 30.769 0.00 0.00 0.00 4.18
180 181 7.504924 TCAATTAGTTTTTGTTCTCATCGGT 57.495 32.000 0.00 0.00 0.00 4.69
181 182 7.581476 TCAATTAGTTTTTGTTCTCATCGGTC 58.419 34.615 0.00 0.00 0.00 4.79
182 183 7.444183 TCAATTAGTTTTTGTTCTCATCGGTCT 59.556 33.333 0.00 0.00 0.00 3.85
183 184 8.717821 CAATTAGTTTTTGTTCTCATCGGTCTA 58.282 33.333 0.00 0.00 0.00 2.59
184 185 7.647907 TTAGTTTTTGTTCTCATCGGTCTAC 57.352 36.000 0.00 0.00 0.00 2.59
185 186 4.684703 AGTTTTTGTTCTCATCGGTCTACG 59.315 41.667 0.00 0.00 46.11 3.51
209 210 6.910536 ACATCAGTCGGATTCAGAAATTAC 57.089 37.500 0.00 0.00 32.57 1.89
210 211 5.520288 ACATCAGTCGGATTCAGAAATTACG 59.480 40.000 0.00 0.00 32.57 3.18
211 212 3.863424 TCAGTCGGATTCAGAAATTACGC 59.137 43.478 0.00 0.00 0.00 4.42
212 213 3.865745 CAGTCGGATTCAGAAATTACGCT 59.134 43.478 0.00 0.00 0.00 5.07
213 214 3.865745 AGTCGGATTCAGAAATTACGCTG 59.134 43.478 0.00 0.00 0.00 5.18
214 215 3.001330 GTCGGATTCAGAAATTACGCTGG 59.999 47.826 0.00 0.00 33.05 4.85
215 216 2.287915 CGGATTCAGAAATTACGCTGGG 59.712 50.000 0.00 0.00 33.05 4.45
216 217 3.279434 GGATTCAGAAATTACGCTGGGT 58.721 45.455 2.10 2.10 33.05 4.51
217 218 4.448210 GGATTCAGAAATTACGCTGGGTA 58.552 43.478 0.00 0.00 33.05 3.69
218 219 4.879545 GGATTCAGAAATTACGCTGGGTAA 59.120 41.667 17.91 17.91 44.77 2.85
219 220 5.355910 GGATTCAGAAATTACGCTGGGTAAA 59.644 40.000 19.21 3.84 43.93 2.01
220 221 6.127842 GGATTCAGAAATTACGCTGGGTAAAA 60.128 38.462 19.21 9.71 43.93 1.52
221 222 5.616488 TCAGAAATTACGCTGGGTAAAAC 57.384 39.130 19.21 13.45 43.93 2.43
222 223 4.456566 TCAGAAATTACGCTGGGTAAAACC 59.543 41.667 19.21 11.59 43.93 3.27
223 224 3.437741 AGAAATTACGCTGGGTAAAACCG 59.562 43.478 19.21 0.00 43.93 4.44
224 225 2.766345 ATTACGCTGGGTAAAACCGA 57.234 45.000 19.21 0.00 43.93 4.69
225 226 2.766345 TTACGCTGGGTAAAACCGAT 57.234 45.000 14.03 0.00 39.83 4.18
226 227 2.012937 TACGCTGGGTAAAACCGATG 57.987 50.000 1.70 0.00 39.83 3.84
227 228 0.035739 ACGCTGGGTAAAACCGATGT 59.964 50.000 0.00 0.00 39.83 3.06
228 229 0.446222 CGCTGGGTAAAACCGATGTG 59.554 55.000 0.00 0.00 39.83 3.21
229 230 1.530323 GCTGGGTAAAACCGATGTGT 58.470 50.000 0.00 0.00 39.83 3.72
230 231 1.883926 GCTGGGTAAAACCGATGTGTT 59.116 47.619 0.00 0.00 39.83 3.32
231 232 2.295070 GCTGGGTAAAACCGATGTGTTT 59.705 45.455 0.00 0.00 39.83 2.83
232 233 3.243602 GCTGGGTAAAACCGATGTGTTTT 60.244 43.478 7.03 7.03 46.88 2.43
233 234 4.295051 CTGGGTAAAACCGATGTGTTTTG 58.705 43.478 11.08 0.00 45.40 2.44
234 235 3.700038 TGGGTAAAACCGATGTGTTTTGT 59.300 39.130 11.08 0.00 45.40 2.83
235 236 4.885907 TGGGTAAAACCGATGTGTTTTGTA 59.114 37.500 11.08 0.00 45.40 2.41
236 237 5.008811 TGGGTAAAACCGATGTGTTTTGTAG 59.991 40.000 11.08 0.00 45.40 2.74
237 238 5.008911 GGGTAAAACCGATGTGTTTTGTAGT 59.991 40.000 11.08 0.00 45.40 2.73
238 239 6.138088 GGTAAAACCGATGTGTTTTGTAGTC 58.862 40.000 11.08 0.00 45.40 2.59
239 240 6.017687 GGTAAAACCGATGTGTTTTGTAGTCT 60.018 38.462 11.08 0.00 45.40 3.24
240 241 6.445357 AAAACCGATGTGTTTTGTAGTCTT 57.555 33.333 1.44 0.00 44.46 3.01
241 242 6.445357 AAACCGATGTGTTTTGTAGTCTTT 57.555 33.333 0.00 0.00 34.92 2.52
242 243 6.445357 AACCGATGTGTTTTGTAGTCTTTT 57.555 33.333 0.00 0.00 0.00 2.27
243 244 6.445357 ACCGATGTGTTTTGTAGTCTTTTT 57.555 33.333 0.00 0.00 0.00 1.94
270 271 8.908172 TTTACGTTCCTTTTTGTCGTAAAATT 57.092 26.923 15.28 0.00 46.30 1.82
271 272 9.994432 TTTACGTTCCTTTTTGTCGTAAAATTA 57.006 25.926 15.28 0.00 46.30 1.40
272 273 7.897153 ACGTTCCTTTTTGTCGTAAAATTAC 57.103 32.000 0.00 0.00 33.04 1.89
273 274 7.470900 ACGTTCCTTTTTGTCGTAAAATTACA 58.529 30.769 4.37 0.00 33.28 2.41
274 275 8.130469 ACGTTCCTTTTTGTCGTAAAATTACAT 58.870 29.630 4.37 0.00 33.28 2.29
275 276 8.624028 CGTTCCTTTTTGTCGTAAAATTACATC 58.376 33.333 4.37 0.00 33.28 3.06
276 277 9.453325 GTTCCTTTTTGTCGTAAAATTACATCA 57.547 29.630 4.37 0.19 33.28 3.07
284 285 9.929722 TTGTCGTAAAATTACATCAATAGCATC 57.070 29.630 4.37 0.00 33.28 3.91
285 286 9.325198 TGTCGTAAAATTACATCAATAGCATCT 57.675 29.630 4.37 0.00 33.28 2.90
286 287 9.586150 GTCGTAAAATTACATCAATAGCATCTG 57.414 33.333 4.37 0.00 33.28 2.90
287 288 8.773645 TCGTAAAATTACATCAATAGCATCTGG 58.226 33.333 4.37 0.00 33.28 3.86
288 289 8.559536 CGTAAAATTACATCAATAGCATCTGGT 58.440 33.333 4.37 0.00 33.28 4.00
291 292 9.807649 AAAATTACATCAATAGCATCTGGTTTC 57.192 29.630 0.00 0.00 0.00 2.78
292 293 8.757982 AATTACATCAATAGCATCTGGTTTCT 57.242 30.769 0.00 0.00 0.00 2.52
293 294 8.757982 ATTACATCAATAGCATCTGGTTTCTT 57.242 30.769 0.00 0.00 0.00 2.52
294 295 9.851686 ATTACATCAATAGCATCTGGTTTCTTA 57.148 29.630 0.00 0.00 0.00 2.10
295 296 7.559590 ACATCAATAGCATCTGGTTTCTTAC 57.440 36.000 0.00 0.00 0.00 2.34
296 297 7.112122 ACATCAATAGCATCTGGTTTCTTACA 58.888 34.615 0.00 0.00 0.00 2.41
297 298 7.281774 ACATCAATAGCATCTGGTTTCTTACAG 59.718 37.037 0.00 0.00 36.07 2.74
298 299 5.586243 TCAATAGCATCTGGTTTCTTACAGC 59.414 40.000 0.00 0.00 34.76 4.40
299 300 2.350522 AGCATCTGGTTTCTTACAGCG 58.649 47.619 0.00 0.00 34.76 5.18
300 301 2.028112 AGCATCTGGTTTCTTACAGCGA 60.028 45.455 0.00 0.00 34.76 4.93
301 302 2.939103 GCATCTGGTTTCTTACAGCGAT 59.061 45.455 0.00 0.00 34.76 4.58
302 303 3.375299 GCATCTGGTTTCTTACAGCGATT 59.625 43.478 0.00 0.00 34.76 3.34
303 304 4.570772 GCATCTGGTTTCTTACAGCGATTA 59.429 41.667 0.00 0.00 34.76 1.75
304 305 5.502544 GCATCTGGTTTCTTACAGCGATTAC 60.503 44.000 0.00 0.00 34.76 1.89
305 306 4.501071 TCTGGTTTCTTACAGCGATTACC 58.499 43.478 0.00 0.00 34.76 2.85
306 307 3.602483 TGGTTTCTTACAGCGATTACCC 58.398 45.455 0.00 0.00 0.00 3.69
307 308 3.262405 TGGTTTCTTACAGCGATTACCCT 59.738 43.478 0.00 0.00 0.00 4.34
308 309 3.621715 GGTTTCTTACAGCGATTACCCTG 59.378 47.826 0.00 0.00 35.26 4.45
309 310 3.536956 TTCTTACAGCGATTACCCTGG 57.463 47.619 0.00 0.00 33.43 4.45
310 311 2.463752 TCTTACAGCGATTACCCTGGT 58.536 47.619 0.00 0.00 33.43 4.00
311 312 2.835764 TCTTACAGCGATTACCCTGGTT 59.164 45.455 0.00 0.00 33.43 3.67
312 313 3.262405 TCTTACAGCGATTACCCTGGTTT 59.738 43.478 0.00 0.00 33.43 3.27
313 314 4.467082 TCTTACAGCGATTACCCTGGTTTA 59.533 41.667 0.00 0.00 33.43 2.01
314 315 3.261981 ACAGCGATTACCCTGGTTTAG 57.738 47.619 0.00 0.00 33.43 1.85
315 316 2.570302 ACAGCGATTACCCTGGTTTAGT 59.430 45.455 0.00 0.00 33.43 2.24
316 317 3.008704 ACAGCGATTACCCTGGTTTAGTT 59.991 43.478 0.00 0.00 33.43 2.24
317 318 3.621715 CAGCGATTACCCTGGTTTAGTTC 59.378 47.826 0.00 0.00 0.00 3.01
318 319 2.941064 GCGATTACCCTGGTTTAGTTCC 59.059 50.000 0.00 0.00 0.00 3.62
319 320 3.370209 GCGATTACCCTGGTTTAGTTCCT 60.370 47.826 0.00 0.00 0.00 3.36
320 321 4.439968 CGATTACCCTGGTTTAGTTCCTC 58.560 47.826 0.00 0.00 0.00 3.71
321 322 4.081309 CGATTACCCTGGTTTAGTTCCTCA 60.081 45.833 0.00 0.00 0.00 3.86
322 323 4.628963 TTACCCTGGTTTAGTTCCTCAC 57.371 45.455 0.00 0.00 0.00 3.51
323 324 2.414612 ACCCTGGTTTAGTTCCTCACA 58.585 47.619 0.00 0.00 0.00 3.58
324 325 2.105993 ACCCTGGTTTAGTTCCTCACAC 59.894 50.000 0.00 0.00 0.00 3.82
325 326 2.105821 CCCTGGTTTAGTTCCTCACACA 59.894 50.000 0.00 0.00 0.00 3.72
326 327 3.244911 CCCTGGTTTAGTTCCTCACACAT 60.245 47.826 0.00 0.00 0.00 3.21
327 328 4.003648 CCTGGTTTAGTTCCTCACACATC 58.996 47.826 0.00 0.00 0.00 3.06
328 329 4.003648 CTGGTTTAGTTCCTCACACATCC 58.996 47.826 0.00 0.00 0.00 3.51
329 330 3.392947 TGGTTTAGTTCCTCACACATCCA 59.607 43.478 0.00 0.00 0.00 3.41
330 331 3.751698 GGTTTAGTTCCTCACACATCCAC 59.248 47.826 0.00 0.00 0.00 4.02
331 332 4.385825 GTTTAGTTCCTCACACATCCACA 58.614 43.478 0.00 0.00 0.00 4.17
332 333 4.698201 TTAGTTCCTCACACATCCACAA 57.302 40.909 0.00 0.00 0.00 3.33
333 334 2.851195 AGTTCCTCACACATCCACAAC 58.149 47.619 0.00 0.00 0.00 3.32
334 335 1.531149 GTTCCTCACACATCCACAACG 59.469 52.381 0.00 0.00 0.00 4.10
335 336 0.756294 TCCTCACACATCCACAACGT 59.244 50.000 0.00 0.00 0.00 3.99
336 337 1.964933 TCCTCACACATCCACAACGTA 59.035 47.619 0.00 0.00 0.00 3.57
337 338 2.365941 TCCTCACACATCCACAACGTAA 59.634 45.455 0.00 0.00 0.00 3.18
338 339 2.478894 CCTCACACATCCACAACGTAAC 59.521 50.000 0.00 0.00 0.00 2.50
339 340 3.390135 CTCACACATCCACAACGTAACT 58.610 45.455 0.00 0.00 0.00 2.24
340 341 3.799366 TCACACATCCACAACGTAACTT 58.201 40.909 0.00 0.00 0.00 2.66
341 342 3.558006 TCACACATCCACAACGTAACTTG 59.442 43.478 0.00 0.00 0.00 3.16
342 343 2.289547 ACACATCCACAACGTAACTTGC 59.710 45.455 0.00 0.00 0.00 4.01
343 344 1.877443 ACATCCACAACGTAACTTGCC 59.123 47.619 0.00 0.00 0.00 4.52
344 345 2.151202 CATCCACAACGTAACTTGCCT 58.849 47.619 0.00 0.00 0.00 4.75
345 346 2.335316 TCCACAACGTAACTTGCCTT 57.665 45.000 0.00 0.00 0.00 4.35
346 347 1.944024 TCCACAACGTAACTTGCCTTG 59.056 47.619 0.00 0.00 0.00 3.61
347 348 1.599419 CCACAACGTAACTTGCCTTGC 60.599 52.381 0.00 0.00 0.00 4.01
348 349 1.064803 CACAACGTAACTTGCCTTGCA 59.935 47.619 0.00 0.00 36.47 4.08
349 350 1.953686 ACAACGTAACTTGCCTTGCAT 59.046 42.857 0.00 0.00 38.76 3.96
350 351 2.287547 ACAACGTAACTTGCCTTGCATG 60.288 45.455 0.00 0.00 38.76 4.06
351 352 0.240945 ACGTAACTTGCCTTGCATGC 59.759 50.000 11.82 11.82 38.76 4.06
352 353 0.240678 CGTAACTTGCCTTGCATGCA 59.759 50.000 18.46 18.46 38.76 3.96
353 354 1.701704 GTAACTTGCCTTGCATGCAC 58.298 50.000 22.58 10.11 38.76 4.57
354 355 1.000385 GTAACTTGCCTTGCATGCACA 60.000 47.619 22.58 13.02 38.76 4.57
355 356 0.682852 AACTTGCCTTGCATGCACAT 59.317 45.000 22.58 0.00 38.76 3.21
356 357 0.245539 ACTTGCCTTGCATGCACATC 59.754 50.000 22.58 12.37 38.76 3.06
357 358 0.800683 CTTGCCTTGCATGCACATCG 60.801 55.000 22.58 8.97 38.76 3.84
358 359 1.525718 TTGCCTTGCATGCACATCGT 61.526 50.000 22.58 0.00 38.76 3.73
359 360 0.676151 TGCCTTGCATGCACATCGTA 60.676 50.000 22.58 3.16 31.71 3.43
360 361 0.451383 GCCTTGCATGCACATCGTAA 59.549 50.000 22.58 2.30 0.00 3.18
361 362 1.532505 GCCTTGCATGCACATCGTAAG 60.533 52.381 22.58 13.15 0.00 2.34
376 377 4.650754 TCGTAAGATTACCTCAGAAGCC 57.349 45.455 0.00 0.00 45.01 4.35
377 378 3.383825 TCGTAAGATTACCTCAGAAGCCC 59.616 47.826 0.00 0.00 45.01 5.19
378 379 3.385111 CGTAAGATTACCTCAGAAGCCCT 59.615 47.826 0.00 0.00 43.02 5.19
379 380 4.141914 CGTAAGATTACCTCAGAAGCCCTT 60.142 45.833 0.00 0.00 43.02 3.95
380 381 4.936685 AAGATTACCTCAGAAGCCCTTT 57.063 40.909 0.00 0.00 0.00 3.11
381 382 4.495690 AGATTACCTCAGAAGCCCTTTC 57.504 45.455 0.00 0.00 35.97 2.62
382 383 9.460748 CGTAAGATTACCTCAGAAGCCCTTTCT 62.461 44.444 0.00 0.00 43.96 2.52
383 384 4.538089 AGATTACCTCAGAAGCCCTTTCTT 59.462 41.667 0.00 0.00 43.68 2.52
384 385 5.726793 AGATTACCTCAGAAGCCCTTTCTTA 59.273 40.000 0.00 0.00 43.68 2.10
385 386 3.704800 ACCTCAGAAGCCCTTTCTTAC 57.295 47.619 0.00 0.00 43.68 2.34
386 387 2.028020 ACCTCAGAAGCCCTTTCTTACG 60.028 50.000 0.00 0.00 43.68 3.18
387 388 2.622436 CTCAGAAGCCCTTTCTTACGG 58.378 52.381 0.00 0.00 43.68 4.02
388 389 1.975680 TCAGAAGCCCTTTCTTACGGT 59.024 47.619 0.00 0.00 43.68 4.83
389 390 2.076863 CAGAAGCCCTTTCTTACGGTG 58.923 52.381 0.00 0.00 43.68 4.94
390 391 1.003233 AGAAGCCCTTTCTTACGGTGG 59.997 52.381 0.00 0.00 43.68 4.61
391 392 0.769247 AAGCCCTTTCTTACGGTGGT 59.231 50.000 0.00 0.00 0.00 4.16
392 393 0.769247 AGCCCTTTCTTACGGTGGTT 59.231 50.000 0.00 0.00 0.00 3.67
393 394 1.162698 GCCCTTTCTTACGGTGGTTC 58.837 55.000 0.00 0.00 0.00 3.62
394 395 1.543871 GCCCTTTCTTACGGTGGTTCA 60.544 52.381 0.00 0.00 0.00 3.18
395 396 2.423577 CCCTTTCTTACGGTGGTTCAG 58.576 52.381 0.00 0.00 0.00 3.02
396 397 2.038033 CCCTTTCTTACGGTGGTTCAGA 59.962 50.000 0.00 0.00 0.00 3.27
397 398 3.326747 CCTTTCTTACGGTGGTTCAGAG 58.673 50.000 0.00 0.00 0.00 3.35
398 399 2.450609 TTCTTACGGTGGTTCAGAGC 57.549 50.000 0.00 0.00 0.00 4.09
399 400 0.242825 TCTTACGGTGGTTCAGAGCG 59.757 55.000 0.00 0.00 40.12 5.03
401 402 0.319211 TTACGGTGGTTCAGAGCGTG 60.319 55.000 7.21 0.00 46.27 5.34
402 403 1.457823 TACGGTGGTTCAGAGCGTGT 61.458 55.000 7.21 0.00 46.27 4.49
403 404 2.310233 CGGTGGTTCAGAGCGTGTG 61.310 63.158 0.00 0.00 0.00 3.82
404 405 2.607892 GGTGGTTCAGAGCGTGTGC 61.608 63.158 0.00 0.00 43.24 4.57
415 416 3.337889 CGTGTGCTCGTGGGTGTG 61.338 66.667 0.00 0.00 0.00 3.82
416 417 2.972505 GTGTGCTCGTGGGTGTGG 60.973 66.667 0.00 0.00 0.00 4.17
417 418 4.927782 TGTGCTCGTGGGTGTGGC 62.928 66.667 0.00 0.00 0.00 5.01
418 419 4.927782 GTGCTCGTGGGTGTGGCA 62.928 66.667 0.00 0.00 0.00 4.92
419 420 3.952508 TGCTCGTGGGTGTGGCAT 61.953 61.111 0.00 0.00 0.00 4.40
420 421 3.434319 GCTCGTGGGTGTGGCATG 61.434 66.667 0.00 0.00 0.00 4.06
421 422 2.032528 CTCGTGGGTGTGGCATGT 59.967 61.111 0.00 0.00 0.00 3.21
422 423 2.281414 TCGTGGGTGTGGCATGTG 60.281 61.111 0.00 0.00 0.00 3.21
423 424 3.364441 CGTGGGTGTGGCATGTGG 61.364 66.667 0.00 0.00 0.00 4.17
424 425 2.203480 GTGGGTGTGGCATGTGGT 60.203 61.111 0.00 0.00 0.00 4.16
425 426 1.832167 GTGGGTGTGGCATGTGGTT 60.832 57.895 0.00 0.00 0.00 3.67
426 427 1.530419 TGGGTGTGGCATGTGGTTC 60.530 57.895 0.00 0.00 0.00 3.62
427 428 2.625823 GGGTGTGGCATGTGGTTCG 61.626 63.158 0.00 0.00 0.00 3.95
428 429 1.896660 GGTGTGGCATGTGGTTCGT 60.897 57.895 0.00 0.00 0.00 3.85
429 430 1.574428 GTGTGGCATGTGGTTCGTC 59.426 57.895 0.00 0.00 0.00 4.20
430 431 0.884704 GTGTGGCATGTGGTTCGTCT 60.885 55.000 0.00 0.00 0.00 4.18
431 432 0.884259 TGTGGCATGTGGTTCGTCTG 60.884 55.000 0.00 0.00 0.00 3.51
432 433 0.884704 GTGGCATGTGGTTCGTCTGT 60.885 55.000 0.00 0.00 0.00 3.41
433 434 0.884259 TGGCATGTGGTTCGTCTGTG 60.884 55.000 0.00 0.00 0.00 3.66
434 435 0.602638 GGCATGTGGTTCGTCTGTGA 60.603 55.000 0.00 0.00 0.00 3.58
435 436 0.792640 GCATGTGGTTCGTCTGTGAG 59.207 55.000 0.00 0.00 0.00 3.51
436 437 1.432514 CATGTGGTTCGTCTGTGAGG 58.567 55.000 0.00 0.00 0.00 3.86
437 438 1.048601 ATGTGGTTCGTCTGTGAGGT 58.951 50.000 0.00 0.00 0.00 3.85
438 439 1.694844 TGTGGTTCGTCTGTGAGGTA 58.305 50.000 0.00 0.00 0.00 3.08
439 440 2.033372 TGTGGTTCGTCTGTGAGGTAA 58.967 47.619 0.00 0.00 0.00 2.85
440 441 2.431419 TGTGGTTCGTCTGTGAGGTAAA 59.569 45.455 0.00 0.00 0.00 2.01
441 442 3.070446 TGTGGTTCGTCTGTGAGGTAAAT 59.930 43.478 0.00 0.00 0.00 1.40
442 443 4.062991 GTGGTTCGTCTGTGAGGTAAATT 58.937 43.478 0.00 0.00 0.00 1.82
443 444 4.514066 GTGGTTCGTCTGTGAGGTAAATTT 59.486 41.667 0.00 0.00 0.00 1.82
444 445 5.697633 GTGGTTCGTCTGTGAGGTAAATTTA 59.302 40.000 0.00 0.00 0.00 1.40
445 446 5.697633 TGGTTCGTCTGTGAGGTAAATTTAC 59.302 40.000 18.30 18.30 0.00 2.01
446 447 5.164022 GGTTCGTCTGTGAGGTAAATTTACG 60.164 44.000 19.48 9.55 34.50 3.18
447 448 5.125100 TCGTCTGTGAGGTAAATTTACGT 57.875 39.130 20.41 20.41 34.50 3.57
448 449 5.531634 TCGTCTGTGAGGTAAATTTACGTT 58.468 37.500 21.02 12.75 34.50 3.99
449 450 5.630680 TCGTCTGTGAGGTAAATTTACGTTC 59.369 40.000 21.02 19.23 34.50 3.95
450 451 5.403166 CGTCTGTGAGGTAAATTTACGTTCA 59.597 40.000 21.02 21.04 34.50 3.18
451 452 6.074195 CGTCTGTGAGGTAAATTTACGTTCAA 60.074 38.462 24.15 17.08 33.07 2.69
452 453 7.067728 GTCTGTGAGGTAAATTTACGTTCAAC 58.932 38.462 24.15 20.42 33.07 3.18
453 454 6.987992 TCTGTGAGGTAAATTTACGTTCAACT 59.012 34.615 24.15 15.05 33.07 3.16
454 455 7.170320 TCTGTGAGGTAAATTTACGTTCAACTC 59.830 37.037 24.15 20.46 33.07 3.01
455 456 6.987992 TGTGAGGTAAATTTACGTTCAACTCT 59.012 34.615 24.15 13.98 33.07 3.24
456 457 7.496591 TGTGAGGTAAATTTACGTTCAACTCTT 59.503 33.333 24.15 0.23 33.07 2.85
457 458 8.340443 GTGAGGTAAATTTACGTTCAACTCTTT 58.660 33.333 24.15 0.06 33.07 2.52
458 459 8.553696 TGAGGTAAATTTACGTTCAACTCTTTC 58.446 33.333 21.02 8.04 34.50 2.62
459 460 8.672823 AGGTAAATTTACGTTCAACTCTTTCT 57.327 30.769 19.48 5.86 34.50 2.52
460 461 9.117183 AGGTAAATTTACGTTCAACTCTTTCTT 57.883 29.630 19.48 0.00 34.50 2.52
461 462 9.726232 GGTAAATTTACGTTCAACTCTTTCTTT 57.274 29.630 19.48 0.00 34.50 2.52
463 464 8.851960 AAATTTACGTTCAACTCTTTCTTTCC 57.148 30.769 0.00 0.00 0.00 3.13
464 465 7.803279 ATTTACGTTCAACTCTTTCTTTCCT 57.197 32.000 0.00 0.00 0.00 3.36
465 466 8.897872 ATTTACGTTCAACTCTTTCTTTCCTA 57.102 30.769 0.00 0.00 0.00 2.94
466 467 7.941795 TTACGTTCAACTCTTTCTTTCCTAG 57.058 36.000 0.00 0.00 0.00 3.02
467 468 5.915175 ACGTTCAACTCTTTCTTTCCTAGT 58.085 37.500 0.00 0.00 0.00 2.57
468 469 5.753921 ACGTTCAACTCTTTCTTTCCTAGTG 59.246 40.000 0.00 0.00 0.00 2.74
469 470 5.177696 CGTTCAACTCTTTCTTTCCTAGTGG 59.822 44.000 0.00 0.00 0.00 4.00
470 471 5.888982 TCAACTCTTTCTTTCCTAGTGGT 57.111 39.130 0.00 0.00 34.23 4.16
471 472 6.248569 TCAACTCTTTCTTTCCTAGTGGTT 57.751 37.500 0.00 0.00 34.23 3.67
472 473 6.055588 TCAACTCTTTCTTTCCTAGTGGTTG 58.944 40.000 0.00 0.00 33.85 3.77
473 474 5.632034 ACTCTTTCTTTCCTAGTGGTTGT 57.368 39.130 0.00 0.00 34.23 3.32
474 475 5.368989 ACTCTTTCTTTCCTAGTGGTTGTG 58.631 41.667 0.00 0.00 34.23 3.33
475 476 4.714632 TCTTTCTTTCCTAGTGGTTGTGG 58.285 43.478 0.00 0.00 34.23 4.17
476 477 2.561478 TCTTTCCTAGTGGTTGTGGC 57.439 50.000 0.00 0.00 34.23 5.01
477 478 2.054799 TCTTTCCTAGTGGTTGTGGCT 58.945 47.619 0.00 0.00 34.23 4.75
478 479 2.154462 CTTTCCTAGTGGTTGTGGCTG 58.846 52.381 0.00 0.00 34.23 4.85
479 480 1.136828 TTCCTAGTGGTTGTGGCTGT 58.863 50.000 0.00 0.00 34.23 4.40
480 481 0.396435 TCCTAGTGGTTGTGGCTGTG 59.604 55.000 0.00 0.00 34.23 3.66
481 482 0.606401 CCTAGTGGTTGTGGCTGTGG 60.606 60.000 0.00 0.00 0.00 4.17
482 483 1.228124 TAGTGGTTGTGGCTGTGGC 60.228 57.895 0.00 0.00 37.82 5.01
483 484 3.964875 GTGGTTGTGGCTGTGGCG 61.965 66.667 0.00 0.00 39.81 5.69
484 485 4.497984 TGGTTGTGGCTGTGGCGT 62.498 61.111 0.00 0.00 39.81 5.68
485 486 3.964875 GGTTGTGGCTGTGGCGTG 61.965 66.667 0.00 0.00 39.81 5.34
486 487 3.209097 GTTGTGGCTGTGGCGTGT 61.209 61.111 0.00 0.00 39.81 4.49
487 488 3.208383 TTGTGGCTGTGGCGTGTG 61.208 61.111 0.00 0.00 39.81 3.82
488 489 3.689002 TTGTGGCTGTGGCGTGTGA 62.689 57.895 0.00 0.00 39.81 3.58
489 490 2.669569 GTGGCTGTGGCGTGTGAT 60.670 61.111 0.00 0.00 39.81 3.06
490 491 2.112928 TGGCTGTGGCGTGTGATT 59.887 55.556 0.00 0.00 39.81 2.57
491 492 1.965930 TGGCTGTGGCGTGTGATTC 60.966 57.895 0.00 0.00 39.81 2.52
492 493 2.476051 GCTGTGGCGTGTGATTCG 59.524 61.111 0.00 0.00 0.00 3.34
493 494 3.027170 GCTGTGGCGTGTGATTCGG 62.027 63.158 0.00 0.00 0.00 4.30
498 499 3.499737 GCGTGTGATTCGGCTGGG 61.500 66.667 0.00 0.00 0.00 4.45
499 500 2.819595 CGTGTGATTCGGCTGGGG 60.820 66.667 0.00 0.00 0.00 4.96
500 501 2.351276 GTGTGATTCGGCTGGGGT 59.649 61.111 0.00 0.00 0.00 4.95
501 502 2.040544 GTGTGATTCGGCTGGGGTG 61.041 63.158 0.00 0.00 0.00 4.61
502 503 2.220586 TGTGATTCGGCTGGGGTGA 61.221 57.895 0.00 0.00 0.00 4.02
503 504 1.450312 GTGATTCGGCTGGGGTGAG 60.450 63.158 0.00 0.00 0.00 3.51
504 505 1.612146 TGATTCGGCTGGGGTGAGA 60.612 57.895 0.00 0.00 0.00 3.27
505 506 0.982852 TGATTCGGCTGGGGTGAGAT 60.983 55.000 0.00 0.00 0.00 2.75
506 507 0.181350 GATTCGGCTGGGGTGAGATT 59.819 55.000 0.00 0.00 0.00 2.40
507 508 0.181350 ATTCGGCTGGGGTGAGATTC 59.819 55.000 0.00 0.00 0.00 2.52
508 509 0.909610 TTCGGCTGGGGTGAGATTCT 60.910 55.000 0.00 0.00 0.00 2.40
509 510 0.909610 TCGGCTGGGGTGAGATTCTT 60.910 55.000 0.00 0.00 0.00 2.52
510 511 0.462759 CGGCTGGGGTGAGATTCTTC 60.463 60.000 0.00 0.00 0.00 2.87
511 512 0.620556 GGCTGGGGTGAGATTCTTCA 59.379 55.000 0.00 0.00 0.00 3.02
512 513 1.680249 GGCTGGGGTGAGATTCTTCAC 60.680 57.143 7.37 7.37 45.28 3.18
518 519 2.409948 GTGAGATTCTTCACCCTGGG 57.590 55.000 12.28 12.28 41.24 4.45
519 520 1.630878 GTGAGATTCTTCACCCTGGGT 59.369 52.381 14.05 14.05 41.24 4.51
529 530 1.905512 ACCCTGGGTGACGAATAGC 59.094 57.895 19.82 0.00 32.98 2.97
539 540 3.489398 GGTGACGAATAGCGATTGACTCT 60.489 47.826 0.00 0.00 44.57 3.24
565 566 2.157834 TCACCGTCACAATACGCTTT 57.842 45.000 0.00 0.00 41.51 3.51
569 570 3.059188 CACCGTCACAATACGCTTTTTCT 60.059 43.478 0.00 0.00 41.51 2.52
571 572 3.185594 CCGTCACAATACGCTTTTTCTCA 59.814 43.478 0.00 0.00 41.51 3.27
591 592 9.959749 TTTCTCATAAATTTACGCTTTCAGTTT 57.040 25.926 0.00 0.00 0.00 2.66
642 647 7.913821 GGTACTAAATTTCATCCGTCCAATTTC 59.086 37.037 0.00 0.00 32.42 2.17
657 662 3.735746 CCAATTTCGTTTTCACAGCTTCC 59.264 43.478 0.00 0.00 0.00 3.46
663 668 4.245660 TCGTTTTCACAGCTTCCTATCAG 58.754 43.478 0.00 0.00 0.00 2.90
681 687 2.234414 TCAGATGGGCCAGAAAATTTGC 59.766 45.455 13.78 0.00 0.00 3.68
682 688 2.235402 CAGATGGGCCAGAAAATTTGCT 59.765 45.455 13.78 0.00 0.00 3.91
683 689 3.448301 CAGATGGGCCAGAAAATTTGCTA 59.552 43.478 13.78 0.00 0.00 3.49
684 690 4.100498 CAGATGGGCCAGAAAATTTGCTAT 59.900 41.667 13.78 0.00 0.00 2.97
685 691 3.891422 TGGGCCAGAAAATTTGCTATG 57.109 42.857 0.00 0.00 0.00 2.23
686 692 2.500910 TGGGCCAGAAAATTTGCTATGG 59.499 45.455 0.00 0.00 0.00 2.74
781 787 1.520666 CCTCGGCGTGGACCTAAAT 59.479 57.895 22.66 0.00 0.00 1.40
832 839 6.264832 TGTTTGTTTGAAATACAGTCTGCAG 58.735 36.000 7.63 7.63 0.00 4.41
858 865 9.620259 GTCCTCTAATTCATCTTATCCAAACTT 57.380 33.333 0.00 0.00 0.00 2.66
872 879 3.137544 TCCAAACTTCTACCTTTCCAGCA 59.862 43.478 0.00 0.00 0.00 4.41
876 883 1.464997 CTTCTACCTTTCCAGCAACGC 59.535 52.381 0.00 0.00 0.00 4.84
922 935 2.872925 CGTCGGACGGCTACAACG 60.873 66.667 22.18 0.00 38.08 4.10
962 975 4.228567 TCGTGGGTGCGTGCTTGA 62.229 61.111 0.00 0.00 0.00 3.02
1055 1068 3.849951 CCGGCTATGCTCGTGGGT 61.850 66.667 0.00 0.00 0.00 4.51
1101 1114 1.216977 CATTCTGTGGGTACGCCGA 59.783 57.895 7.55 0.00 34.97 5.54
1178 1191 1.100510 CGTATCCGTCTCAACCTCCA 58.899 55.000 0.00 0.00 0.00 3.86
1183 1196 1.343465 TCCGTCTCAACCTCCAACTTC 59.657 52.381 0.00 0.00 0.00 3.01
1186 1199 2.561419 CGTCTCAACCTCCAACTTCCTA 59.439 50.000 0.00 0.00 0.00 2.94
1210 1223 4.650734 TGCTGTGTTGTGATTTGGATAGA 58.349 39.130 0.00 0.00 0.00 1.98
1227 1240 1.981853 GAAAATTGGAGGCCGGCCA 60.982 57.895 45.13 27.20 38.92 5.36
1231 1244 2.803593 AATTGGAGGCCGGCCATGTT 62.804 55.000 45.13 27.21 38.92 2.71
1238 1251 1.078143 GCCGGCCATGTTCTTCTCT 60.078 57.895 18.11 0.00 0.00 3.10
1243 1256 3.535561 CGGCCATGTTCTTCTCTAACAT 58.464 45.455 2.24 0.00 45.97 2.71
1244 1257 4.442893 CCGGCCATGTTCTTCTCTAACATA 60.443 45.833 2.24 0.00 43.84 2.29
1245 1258 5.300752 CGGCCATGTTCTTCTCTAACATAT 58.699 41.667 2.24 0.00 43.84 1.78
1246 1259 6.455647 CGGCCATGTTCTTCTCTAACATATA 58.544 40.000 2.24 0.00 43.84 0.86
1247 1260 7.099764 CGGCCATGTTCTTCTCTAACATATAT 58.900 38.462 2.24 0.00 43.84 0.86
1248 1261 8.251026 CGGCCATGTTCTTCTCTAACATATATA 58.749 37.037 2.24 0.00 43.84 0.86
1374 1387 2.287427 ACATCCGAACCGATAGCTAACG 60.287 50.000 15.78 15.78 0.00 3.18
1411 1424 1.692749 ACATCCCCACCTACCGCAT 60.693 57.895 0.00 0.00 0.00 4.73
1452 1465 2.763645 AACCCAGCCGTTTCCACCT 61.764 57.895 0.00 0.00 0.00 4.00
1453 1466 2.115266 CCCAGCCGTTTCCACCTT 59.885 61.111 0.00 0.00 0.00 3.50
1459 1472 1.162698 GCCGTTTCCACCTTAGGAAC 58.837 55.000 4.77 0.00 46.85 3.62
1658 1696 0.530870 CCGGCGAGGAAGAAGATTCC 60.531 60.000 9.30 0.00 45.00 3.01
1673 1711 0.976073 ATTCCGGCGGAGAGGAAGAA 60.976 55.000 29.30 12.24 45.65 2.52
1710 1748 3.803162 GAGCAAGGAGGGGAGGCC 61.803 72.222 0.00 0.00 0.00 5.19
1778 1816 0.035630 AGCAAGGTAAGGCAGAGCAG 60.036 55.000 0.00 0.00 0.00 4.24
1892 1930 1.675801 CCTCCTCTTGCACTGCTCA 59.324 57.895 1.98 0.00 0.00 4.26
2023 2061 0.179134 CCTACGCCTTCTTCCTCGTG 60.179 60.000 0.00 0.00 36.50 4.35
2306 2347 0.111832 ACACCCTCTGTACGTGGAGA 59.888 55.000 13.86 7.23 0.00 3.71
2322 2363 4.878397 CGTGGAGAATGCCTTTATTCTTCT 59.122 41.667 7.95 0.00 45.00 2.85
2328 2369 7.094205 GGAGAATGCCTTTATTCTTCTGTTTGA 60.094 37.037 0.00 0.00 45.00 2.69
2419 2461 7.167302 CGAACATCAACAAAATAAAAGCAGACA 59.833 33.333 0.00 0.00 0.00 3.41
2561 2604 4.387559 TGTACACGTACAGAATTGATGCAC 59.612 41.667 5.94 0.00 40.77 4.57
2613 2662 8.351495 TCCATTCAGTCAATTTTTCGAAAAAG 57.649 30.769 32.39 22.99 40.78 2.27
2636 2685 7.847711 AGCCATATGTATACTCAGAAGTTCT 57.152 36.000 0.00 0.00 36.92 3.01
2868 2949 5.947228 TGGAGAAATTCACTAGCACTTTG 57.053 39.130 0.00 0.00 0.00 2.77
3263 3355 4.810345 TGTACAAGGATTTTCCCCTGTTT 58.190 39.130 0.00 0.00 37.19 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 9.685276 ACATCCATGAGAAGAAATTGTACATAA 57.315 29.630 0.00 0.00 0.00 1.90
9 10 9.685276 AACATCCATGAGAAGAAATTGTACATA 57.315 29.630 0.00 0.00 0.00 2.29
10 11 8.585471 AACATCCATGAGAAGAAATTGTACAT 57.415 30.769 0.00 0.00 0.00 2.29
11 12 9.513906 TTAACATCCATGAGAAGAAATTGTACA 57.486 29.630 0.00 0.00 0.00 2.90
22 23 9.850198 TGACATGATAATTAACATCCATGAGAA 57.150 29.630 5.32 0.00 0.00 2.87
23 24 9.850198 TTGACATGATAATTAACATCCATGAGA 57.150 29.630 5.32 0.00 0.00 3.27
25 26 8.570488 GCTTGACATGATAATTAACATCCATGA 58.430 33.333 5.32 0.00 0.00 3.07
26 27 8.573885 AGCTTGACATGATAATTAACATCCATG 58.426 33.333 5.32 9.41 0.00 3.66
27 28 8.701908 AGCTTGACATGATAATTAACATCCAT 57.298 30.769 5.32 0.00 0.00 3.41
28 29 8.407832 CAAGCTTGACATGATAATTAACATCCA 58.592 33.333 22.31 4.73 0.00 3.41
29 30 8.623903 TCAAGCTTGACATGATAATTAACATCC 58.376 33.333 25.16 2.49 31.01 3.51
32 33 7.970061 GCTTCAAGCTTGACATGATAATTAACA 59.030 33.333 28.46 8.00 38.45 2.41
33 34 8.332777 GCTTCAAGCTTGACATGATAATTAAC 57.667 34.615 28.46 2.03 38.45 2.01
50 51 1.534595 CCAAGAGTGTGAGCTTCAAGC 59.465 52.381 0.00 0.00 42.84 4.01
51 52 3.065655 CTCCAAGAGTGTGAGCTTCAAG 58.934 50.000 0.00 0.00 0.00 3.02
52 53 2.700371 TCTCCAAGAGTGTGAGCTTCAA 59.300 45.455 0.00 0.00 0.00 2.69
53 54 2.319844 TCTCCAAGAGTGTGAGCTTCA 58.680 47.619 0.00 0.00 0.00 3.02
54 55 3.608316 ATCTCCAAGAGTGTGAGCTTC 57.392 47.619 0.00 0.00 0.00 3.86
55 56 4.363991 AAATCTCCAAGAGTGTGAGCTT 57.636 40.909 0.00 0.00 0.00 3.74
56 57 4.363991 AAAATCTCCAAGAGTGTGAGCT 57.636 40.909 0.00 0.00 0.00 4.09
75 76 7.041372 CCTCTGATTTCTCCTCGTAAACAAAAA 60.041 37.037 0.00 0.00 0.00 1.94
76 77 6.426937 CCTCTGATTTCTCCTCGTAAACAAAA 59.573 38.462 0.00 0.00 0.00 2.44
77 78 5.932303 CCTCTGATTTCTCCTCGTAAACAAA 59.068 40.000 0.00 0.00 0.00 2.83
78 79 5.011738 ACCTCTGATTTCTCCTCGTAAACAA 59.988 40.000 0.00 0.00 0.00 2.83
79 80 4.527038 ACCTCTGATTTCTCCTCGTAAACA 59.473 41.667 0.00 0.00 0.00 2.83
80 81 5.074584 ACCTCTGATTTCTCCTCGTAAAC 57.925 43.478 0.00 0.00 0.00 2.01
81 82 5.740290 AACCTCTGATTTCTCCTCGTAAA 57.260 39.130 0.00 0.00 0.00 2.01
82 83 5.245301 TCAAACCTCTGATTTCTCCTCGTAA 59.755 40.000 0.00 0.00 0.00 3.18
83 84 4.770531 TCAAACCTCTGATTTCTCCTCGTA 59.229 41.667 0.00 0.00 0.00 3.43
84 85 3.578716 TCAAACCTCTGATTTCTCCTCGT 59.421 43.478 0.00 0.00 0.00 4.18
85 86 4.180057 CTCAAACCTCTGATTTCTCCTCG 58.820 47.826 0.00 0.00 0.00 4.63
86 87 4.019771 ACCTCAAACCTCTGATTTCTCCTC 60.020 45.833 0.00 0.00 0.00 3.71
87 88 3.913163 ACCTCAAACCTCTGATTTCTCCT 59.087 43.478 0.00 0.00 0.00 3.69
88 89 4.293662 ACCTCAAACCTCTGATTTCTCC 57.706 45.455 0.00 0.00 0.00 3.71
89 90 4.697828 GGAACCTCAAACCTCTGATTTCTC 59.302 45.833 0.00 0.00 0.00 2.87
90 91 4.352298 AGGAACCTCAAACCTCTGATTTCT 59.648 41.667 0.00 0.00 0.00 2.52
91 92 4.657013 AGGAACCTCAAACCTCTGATTTC 58.343 43.478 0.00 0.00 0.00 2.17
92 93 4.731313 AGGAACCTCAAACCTCTGATTT 57.269 40.909 0.00 0.00 0.00 2.17
93 94 4.731313 AAGGAACCTCAAACCTCTGATT 57.269 40.909 0.00 0.00 33.16 2.57
94 95 4.731313 AAAGGAACCTCAAACCTCTGAT 57.269 40.909 0.00 0.00 33.16 2.90
95 96 4.207165 CAAAAGGAACCTCAAACCTCTGA 58.793 43.478 0.00 0.00 33.16 3.27
96 97 3.954258 ACAAAAGGAACCTCAAACCTCTG 59.046 43.478 0.00 0.00 33.16 3.35
97 98 4.251103 ACAAAAGGAACCTCAAACCTCT 57.749 40.909 0.00 0.00 33.16 3.69
98 99 5.593095 AGTAACAAAAGGAACCTCAAACCTC 59.407 40.000 0.00 0.00 33.16 3.85
99 100 5.359860 CAGTAACAAAAGGAACCTCAAACCT 59.640 40.000 0.00 0.00 35.36 3.50
100 101 5.126545 ACAGTAACAAAAGGAACCTCAAACC 59.873 40.000 0.00 0.00 0.00 3.27
101 102 6.203808 ACAGTAACAAAAGGAACCTCAAAC 57.796 37.500 0.00 0.00 0.00 2.93
102 103 9.280174 CTATACAGTAACAAAAGGAACCTCAAA 57.720 33.333 0.00 0.00 0.00 2.69
103 104 8.434392 ACTATACAGTAACAAAAGGAACCTCAA 58.566 33.333 0.00 0.00 31.45 3.02
104 105 7.970102 ACTATACAGTAACAAAAGGAACCTCA 58.030 34.615 0.00 0.00 31.45 3.86
105 106 8.843885 AACTATACAGTAACAAAAGGAACCTC 57.156 34.615 0.00 0.00 33.48 3.85
106 107 8.657712 AGAACTATACAGTAACAAAAGGAACCT 58.342 33.333 0.00 0.00 33.48 3.50
107 108 8.843885 AGAACTATACAGTAACAAAAGGAACC 57.156 34.615 0.00 0.00 33.48 3.62
108 109 9.708092 AGAGAACTATACAGTAACAAAAGGAAC 57.292 33.333 0.00 0.00 33.48 3.62
109 110 9.924650 GAGAGAACTATACAGTAACAAAAGGAA 57.075 33.333 0.00 0.00 33.48 3.36
110 111 9.085645 TGAGAGAACTATACAGTAACAAAAGGA 57.914 33.333 0.00 0.00 33.48 3.36
111 112 9.877178 ATGAGAGAACTATACAGTAACAAAAGG 57.123 33.333 0.00 0.00 33.48 3.11
153 154 9.410556 CCGATGAGAACAAAAACTAATTGAATT 57.589 29.630 0.00 0.00 0.00 2.17
154 155 8.576442 ACCGATGAGAACAAAAACTAATTGAAT 58.424 29.630 0.00 0.00 0.00 2.57
155 156 7.936584 ACCGATGAGAACAAAAACTAATTGAA 58.063 30.769 0.00 0.00 0.00 2.69
156 157 7.444183 AGACCGATGAGAACAAAAACTAATTGA 59.556 33.333 0.00 0.00 0.00 2.57
157 158 7.584987 AGACCGATGAGAACAAAAACTAATTG 58.415 34.615 0.00 0.00 0.00 2.32
158 159 7.745620 AGACCGATGAGAACAAAAACTAATT 57.254 32.000 0.00 0.00 0.00 1.40
159 160 7.063074 CGTAGACCGATGAGAACAAAAACTAAT 59.937 37.037 0.00 0.00 39.56 1.73
160 161 6.364165 CGTAGACCGATGAGAACAAAAACTAA 59.636 38.462 0.00 0.00 39.56 2.24
161 162 5.860182 CGTAGACCGATGAGAACAAAAACTA 59.140 40.000 0.00 0.00 39.56 2.24
162 163 4.684703 CGTAGACCGATGAGAACAAAAACT 59.315 41.667 0.00 0.00 39.56 2.66
163 164 4.682860 TCGTAGACCGATGAGAACAAAAAC 59.317 41.667 0.00 0.00 41.60 2.43
164 165 4.873817 TCGTAGACCGATGAGAACAAAAA 58.126 39.130 0.00 0.00 41.60 1.94
165 166 4.508461 TCGTAGACCGATGAGAACAAAA 57.492 40.909 0.00 0.00 41.60 2.44
185 186 6.291849 CGTAATTTCTGAATCCGACTGATGTC 60.292 42.308 0.00 0.00 39.70 3.06
186 187 5.520288 CGTAATTTCTGAATCCGACTGATGT 59.480 40.000 0.00 0.00 32.68 3.06
187 188 5.557136 GCGTAATTTCTGAATCCGACTGATG 60.557 44.000 0.00 0.00 32.68 3.07
188 189 4.508124 GCGTAATTTCTGAATCCGACTGAT 59.492 41.667 0.00 0.00 34.22 2.90
189 190 3.863424 GCGTAATTTCTGAATCCGACTGA 59.137 43.478 0.00 0.00 0.00 3.41
190 191 3.865745 AGCGTAATTTCTGAATCCGACTG 59.134 43.478 0.00 0.00 0.00 3.51
191 192 3.865745 CAGCGTAATTTCTGAATCCGACT 59.134 43.478 0.00 0.00 32.26 4.18
192 193 3.001330 CCAGCGTAATTTCTGAATCCGAC 59.999 47.826 0.00 0.00 32.26 4.79
193 194 3.194861 CCAGCGTAATTTCTGAATCCGA 58.805 45.455 0.00 0.00 32.26 4.55
194 195 2.287915 CCCAGCGTAATTTCTGAATCCG 59.712 50.000 0.00 0.00 32.26 4.18
195 196 3.279434 ACCCAGCGTAATTTCTGAATCC 58.721 45.455 0.00 0.00 32.26 3.01
196 197 6.431198 TTTACCCAGCGTAATTTCTGAATC 57.569 37.500 0.00 0.00 36.81 2.52
197 198 6.349860 GGTTTTACCCAGCGTAATTTCTGAAT 60.350 38.462 0.00 0.00 36.81 2.57
198 199 5.048573 GGTTTTACCCAGCGTAATTTCTGAA 60.049 40.000 4.30 0.00 36.81 3.02
199 200 4.456566 GGTTTTACCCAGCGTAATTTCTGA 59.543 41.667 4.30 0.00 36.81 3.27
200 201 4.670735 CGGTTTTACCCAGCGTAATTTCTG 60.671 45.833 0.00 0.00 36.81 3.02
201 202 3.437741 CGGTTTTACCCAGCGTAATTTCT 59.562 43.478 0.00 0.00 36.81 2.52
202 203 3.436359 TCGGTTTTACCCAGCGTAATTTC 59.564 43.478 0.00 0.00 36.81 2.17
203 204 3.410508 TCGGTTTTACCCAGCGTAATTT 58.589 40.909 0.00 0.00 36.81 1.82
204 205 3.056588 TCGGTTTTACCCAGCGTAATT 57.943 42.857 0.00 0.00 36.81 1.40
205 206 2.766345 TCGGTTTTACCCAGCGTAAT 57.234 45.000 0.00 0.00 36.81 1.89
206 207 2.289569 ACATCGGTTTTACCCAGCGTAA 60.290 45.455 0.00 0.00 33.75 3.18
207 208 1.275856 ACATCGGTTTTACCCAGCGTA 59.724 47.619 0.00 0.00 33.75 4.42
208 209 0.035739 ACATCGGTTTTACCCAGCGT 59.964 50.000 0.00 0.00 33.75 5.07
209 210 0.446222 CACATCGGTTTTACCCAGCG 59.554 55.000 0.00 0.00 33.75 5.18
210 211 1.530323 ACACATCGGTTTTACCCAGC 58.470 50.000 0.00 0.00 33.75 4.85
211 212 4.202070 ACAAAACACATCGGTTTTACCCAG 60.202 41.667 3.97 0.00 46.23 4.45
212 213 3.700038 ACAAAACACATCGGTTTTACCCA 59.300 39.130 3.97 0.00 46.23 4.51
213 214 4.310357 ACAAAACACATCGGTTTTACCC 57.690 40.909 3.97 0.00 46.23 3.69
214 215 6.017687 AGACTACAAAACACATCGGTTTTACC 60.018 38.462 3.97 0.00 46.23 2.85
215 216 6.951643 AGACTACAAAACACATCGGTTTTAC 58.048 36.000 3.97 0.00 46.23 2.01
216 217 7.556733 AAGACTACAAAACACATCGGTTTTA 57.443 32.000 3.97 0.00 46.23 1.52
218 219 6.445357 AAAGACTACAAAACACATCGGTTT 57.555 33.333 0.00 0.00 42.49 3.27
219 220 6.445357 AAAAGACTACAAAACACATCGGTT 57.555 33.333 0.00 0.00 0.00 4.44
220 221 6.445357 AAAAAGACTACAAAACACATCGGT 57.555 33.333 0.00 0.00 0.00 4.69
246 247 9.432077 GTAATTTTACGACAAAAAGGAACGTAA 57.568 29.630 0.00 0.00 43.88 3.18
247 248 8.607459 TGTAATTTTACGACAAAAAGGAACGTA 58.393 29.630 0.00 0.00 38.18 3.57
248 249 7.470900 TGTAATTTTACGACAAAAAGGAACGT 58.529 30.769 0.00 0.00 40.23 3.99
249 250 7.895582 TGTAATTTTACGACAAAAAGGAACG 57.104 32.000 0.00 0.00 36.45 3.95
250 251 9.453325 TGATGTAATTTTACGACAAAAAGGAAC 57.547 29.630 0.00 0.00 36.45 3.62
258 259 9.929722 GATGCTATTGATGTAATTTTACGACAA 57.070 29.630 11.51 11.51 36.53 3.18
259 260 9.325198 AGATGCTATTGATGTAATTTTACGACA 57.675 29.630 0.00 0.00 36.45 4.35
260 261 9.586150 CAGATGCTATTGATGTAATTTTACGAC 57.414 33.333 0.00 0.00 36.45 4.34
261 262 8.773645 CCAGATGCTATTGATGTAATTTTACGA 58.226 33.333 0.00 0.00 36.45 3.43
262 263 8.559536 ACCAGATGCTATTGATGTAATTTTACG 58.440 33.333 0.00 0.00 36.45 3.18
265 266 9.807649 GAAACCAGATGCTATTGATGTAATTTT 57.192 29.630 0.00 0.00 0.00 1.82
266 267 9.193806 AGAAACCAGATGCTATTGATGTAATTT 57.806 29.630 0.00 0.00 0.00 1.82
267 268 8.757982 AGAAACCAGATGCTATTGATGTAATT 57.242 30.769 0.00 0.00 0.00 1.40
268 269 8.757982 AAGAAACCAGATGCTATTGATGTAAT 57.242 30.769 0.00 0.00 0.00 1.89
269 270 9.109393 GTAAGAAACCAGATGCTATTGATGTAA 57.891 33.333 0.00 0.00 0.00 2.41
270 271 8.264347 TGTAAGAAACCAGATGCTATTGATGTA 58.736 33.333 0.00 0.00 0.00 2.29
271 272 7.112122 TGTAAGAAACCAGATGCTATTGATGT 58.888 34.615 0.00 0.00 0.00 3.06
272 273 7.558161 TGTAAGAAACCAGATGCTATTGATG 57.442 36.000 0.00 0.00 0.00 3.07
273 274 6.261826 GCTGTAAGAAACCAGATGCTATTGAT 59.738 38.462 0.00 0.00 34.07 2.57
274 275 5.586243 GCTGTAAGAAACCAGATGCTATTGA 59.414 40.000 0.00 0.00 34.07 2.57
275 276 5.503031 CGCTGTAAGAAACCAGATGCTATTG 60.503 44.000 0.00 0.00 34.07 1.90
276 277 4.572389 CGCTGTAAGAAACCAGATGCTATT 59.428 41.667 0.00 0.00 34.07 1.73
277 278 4.122776 CGCTGTAAGAAACCAGATGCTAT 58.877 43.478 0.00 0.00 34.07 2.97
278 279 3.194755 TCGCTGTAAGAAACCAGATGCTA 59.805 43.478 0.00 0.00 34.07 3.49
279 280 2.028112 TCGCTGTAAGAAACCAGATGCT 60.028 45.455 0.00 0.00 34.07 3.79
280 281 2.346803 TCGCTGTAAGAAACCAGATGC 58.653 47.619 0.00 0.00 34.07 3.91
281 282 5.006746 GGTAATCGCTGTAAGAAACCAGATG 59.993 44.000 0.00 0.00 34.07 2.90
282 283 5.116882 GGTAATCGCTGTAAGAAACCAGAT 58.883 41.667 0.00 0.00 34.07 2.90
283 284 4.501071 GGTAATCGCTGTAAGAAACCAGA 58.499 43.478 0.00 0.00 34.07 3.86
284 285 3.621715 GGGTAATCGCTGTAAGAAACCAG 59.378 47.826 0.00 0.00 34.07 4.00
285 286 3.262405 AGGGTAATCGCTGTAAGAAACCA 59.738 43.478 0.00 0.00 34.07 3.67
286 287 3.621715 CAGGGTAATCGCTGTAAGAAACC 59.378 47.826 4.52 0.00 45.54 3.27
287 288 4.859629 CAGGGTAATCGCTGTAAGAAAC 57.140 45.455 4.52 0.00 45.54 2.78
295 296 7.598932 AGGAACTAAACCAGGGTAATCGCTG 62.599 48.000 5.51 5.51 44.89 5.18
296 297 3.370209 GGAACTAAACCAGGGTAATCGCT 60.370 47.826 0.00 0.00 37.33 4.93
297 298 2.941064 GGAACTAAACCAGGGTAATCGC 59.059 50.000 0.00 0.00 0.00 4.58
298 299 4.081309 TGAGGAACTAAACCAGGGTAATCG 60.081 45.833 0.00 0.00 41.55 3.34
299 300 5.183969 GTGAGGAACTAAACCAGGGTAATC 58.816 45.833 0.00 0.00 41.55 1.75
300 301 4.600111 TGTGAGGAACTAAACCAGGGTAAT 59.400 41.667 0.00 0.00 41.55 1.89
301 302 3.975312 TGTGAGGAACTAAACCAGGGTAA 59.025 43.478 0.00 0.00 41.55 2.85
302 303 3.325716 GTGTGAGGAACTAAACCAGGGTA 59.674 47.826 0.00 0.00 41.55 3.69
303 304 2.105993 GTGTGAGGAACTAAACCAGGGT 59.894 50.000 0.00 0.00 41.55 4.34
304 305 2.105821 TGTGTGAGGAACTAAACCAGGG 59.894 50.000 0.00 0.00 41.55 4.45
305 306 3.485463 TGTGTGAGGAACTAAACCAGG 57.515 47.619 0.00 0.00 41.55 4.45
306 307 4.003648 GGATGTGTGAGGAACTAAACCAG 58.996 47.826 0.00 0.00 41.55 4.00
307 308 3.392947 TGGATGTGTGAGGAACTAAACCA 59.607 43.478 0.00 0.00 41.55 3.67
308 309 3.751698 GTGGATGTGTGAGGAACTAAACC 59.248 47.826 0.00 0.00 41.55 3.27
309 310 4.385825 TGTGGATGTGTGAGGAACTAAAC 58.614 43.478 0.00 0.00 41.55 2.01
310 311 4.698201 TGTGGATGTGTGAGGAACTAAA 57.302 40.909 0.00 0.00 41.55 1.85
311 312 4.385825 GTTGTGGATGTGTGAGGAACTAA 58.614 43.478 0.00 0.00 41.55 2.24
312 313 3.554129 CGTTGTGGATGTGTGAGGAACTA 60.554 47.826 0.00 0.00 41.55 2.24
314 315 1.531149 CGTTGTGGATGTGTGAGGAAC 59.469 52.381 0.00 0.00 0.00 3.62
315 316 1.140052 ACGTTGTGGATGTGTGAGGAA 59.860 47.619 0.00 0.00 0.00 3.36
316 317 0.756294 ACGTTGTGGATGTGTGAGGA 59.244 50.000 0.00 0.00 0.00 3.71
317 318 2.448926 TACGTTGTGGATGTGTGAGG 57.551 50.000 0.00 0.00 0.00 3.86
318 319 3.390135 AGTTACGTTGTGGATGTGTGAG 58.610 45.455 0.00 0.00 0.00 3.51
319 320 3.462483 AGTTACGTTGTGGATGTGTGA 57.538 42.857 0.00 0.00 0.00 3.58
320 321 3.848191 GCAAGTTACGTTGTGGATGTGTG 60.848 47.826 0.00 0.00 0.00 3.82
321 322 2.289547 GCAAGTTACGTTGTGGATGTGT 59.710 45.455 0.00 0.00 0.00 3.72
322 323 2.350388 GGCAAGTTACGTTGTGGATGTG 60.350 50.000 0.00 0.00 0.00 3.21
323 324 1.877443 GGCAAGTTACGTTGTGGATGT 59.123 47.619 0.00 0.00 0.00 3.06
324 325 2.151202 AGGCAAGTTACGTTGTGGATG 58.849 47.619 0.00 0.00 0.00 3.51
325 326 2.552315 CAAGGCAAGTTACGTTGTGGAT 59.448 45.455 0.00 0.00 0.00 3.41
326 327 1.944024 CAAGGCAAGTTACGTTGTGGA 59.056 47.619 0.00 0.00 0.00 4.02
327 328 1.599419 GCAAGGCAAGTTACGTTGTGG 60.599 52.381 9.60 0.00 35.79 4.17
328 329 1.064803 TGCAAGGCAAGTTACGTTGTG 59.935 47.619 9.60 0.00 34.76 3.33
329 330 1.384525 TGCAAGGCAAGTTACGTTGT 58.615 45.000 9.60 0.00 34.76 3.32
330 331 2.318578 CATGCAAGGCAAGTTACGTTG 58.681 47.619 0.00 4.48 43.62 4.10
331 332 2.704725 CATGCAAGGCAAGTTACGTT 57.295 45.000 0.00 0.00 43.62 3.99
342 343 2.009051 TCTTACGATGTGCATGCAAGG 58.991 47.619 24.58 13.98 0.00 3.61
343 344 3.957671 ATCTTACGATGTGCATGCAAG 57.042 42.857 24.58 14.48 0.00 4.01
344 345 4.035091 GGTAATCTTACGATGTGCATGCAA 59.965 41.667 24.58 13.36 34.50 4.08
345 346 3.559655 GGTAATCTTACGATGTGCATGCA 59.440 43.478 18.46 18.46 34.50 3.96
346 347 3.809832 AGGTAATCTTACGATGTGCATGC 59.190 43.478 11.82 11.82 34.50 4.06
347 348 5.049828 TGAGGTAATCTTACGATGTGCATG 58.950 41.667 0.00 0.00 34.50 4.06
348 349 5.069119 TCTGAGGTAATCTTACGATGTGCAT 59.931 40.000 0.00 0.00 34.50 3.96
349 350 4.401202 TCTGAGGTAATCTTACGATGTGCA 59.599 41.667 0.00 0.00 34.50 4.57
350 351 4.933330 TCTGAGGTAATCTTACGATGTGC 58.067 43.478 0.00 0.00 34.50 4.57
351 352 5.460419 GCTTCTGAGGTAATCTTACGATGTG 59.540 44.000 0.00 0.00 34.50 3.21
352 353 5.452077 GGCTTCTGAGGTAATCTTACGATGT 60.452 44.000 0.00 0.00 34.50 3.06
353 354 4.985409 GGCTTCTGAGGTAATCTTACGATG 59.015 45.833 0.00 0.00 34.50 3.84
354 355 4.039366 GGGCTTCTGAGGTAATCTTACGAT 59.961 45.833 0.00 0.00 34.50 3.73
355 356 3.383825 GGGCTTCTGAGGTAATCTTACGA 59.616 47.826 0.00 0.00 34.50 3.43
356 357 3.385111 AGGGCTTCTGAGGTAATCTTACG 59.615 47.826 0.00 0.00 34.50 3.18
357 358 5.360649 AAGGGCTTCTGAGGTAATCTTAC 57.639 43.478 0.00 0.00 0.00 2.34
358 359 5.726793 AGAAAGGGCTTCTGAGGTAATCTTA 59.273 40.000 0.00 0.00 43.09 2.10
359 360 4.538089 AGAAAGGGCTTCTGAGGTAATCTT 59.462 41.667 0.00 0.00 43.09 2.40
360 361 4.107820 AGAAAGGGCTTCTGAGGTAATCT 58.892 43.478 0.00 0.00 43.09 2.40
361 362 4.495690 AGAAAGGGCTTCTGAGGTAATC 57.504 45.455 0.00 0.00 43.09 1.75
362 363 4.936685 AAGAAAGGGCTTCTGAGGTAAT 57.063 40.909 0.00 0.00 44.00 1.89
363 364 4.322499 CGTAAGAAAGGGCTTCTGAGGTAA 60.322 45.833 0.00 0.00 44.00 2.85
364 365 3.194968 CGTAAGAAAGGGCTTCTGAGGTA 59.805 47.826 0.00 0.00 44.00 3.08
365 366 2.028020 CGTAAGAAAGGGCTTCTGAGGT 60.028 50.000 0.00 0.00 44.00 3.85
366 367 2.622436 CGTAAGAAAGGGCTTCTGAGG 58.378 52.381 0.00 0.00 44.00 3.86
367 368 2.028020 ACCGTAAGAAAGGGCTTCTGAG 60.028 50.000 0.00 0.00 44.00 3.35
368 369 1.975680 ACCGTAAGAAAGGGCTTCTGA 59.024 47.619 0.00 0.00 44.00 3.27
369 370 2.076863 CACCGTAAGAAAGGGCTTCTG 58.923 52.381 0.00 0.00 44.00 3.02
370 371 1.003233 CCACCGTAAGAAAGGGCTTCT 59.997 52.381 0.00 0.00 46.92 2.85
371 372 1.271217 ACCACCGTAAGAAAGGGCTTC 60.271 52.381 0.00 0.00 43.02 3.86
372 373 0.769247 ACCACCGTAAGAAAGGGCTT 59.231 50.000 0.00 0.00 43.02 4.35
373 374 0.769247 AACCACCGTAAGAAAGGGCT 59.231 50.000 0.00 0.00 43.02 5.19
374 375 1.162698 GAACCACCGTAAGAAAGGGC 58.837 55.000 0.00 0.00 43.02 5.19
375 376 2.038033 TCTGAACCACCGTAAGAAAGGG 59.962 50.000 0.00 0.00 43.02 3.95
376 377 3.326747 CTCTGAACCACCGTAAGAAAGG 58.673 50.000 0.00 0.00 43.02 3.11
377 378 2.737252 GCTCTGAACCACCGTAAGAAAG 59.263 50.000 0.00 0.00 43.02 2.62
378 379 2.762745 GCTCTGAACCACCGTAAGAAA 58.237 47.619 0.00 0.00 43.02 2.52
379 380 1.336517 CGCTCTGAACCACCGTAAGAA 60.337 52.381 0.00 0.00 43.02 2.52
380 381 0.242825 CGCTCTGAACCACCGTAAGA 59.757 55.000 0.00 0.00 43.02 2.10
381 382 0.038526 ACGCTCTGAACCACCGTAAG 60.039 55.000 0.00 0.00 0.00 2.34
382 383 0.319211 CACGCTCTGAACCACCGTAA 60.319 55.000 0.00 0.00 0.00 3.18
383 384 1.287815 CACGCTCTGAACCACCGTA 59.712 57.895 0.00 0.00 0.00 4.02
384 385 2.029073 CACGCTCTGAACCACCGT 59.971 61.111 0.00 0.00 0.00 4.83
385 386 2.029073 ACACGCTCTGAACCACCG 59.971 61.111 0.00 0.00 0.00 4.94
386 387 2.607892 GCACACGCTCTGAACCACC 61.608 63.158 0.00 0.00 34.30 4.61
387 388 2.939022 GCACACGCTCTGAACCAC 59.061 61.111 0.00 0.00 34.30 4.16
398 399 3.337889 CACACCCACGAGCACACG 61.338 66.667 0.00 0.00 39.31 4.49
399 400 2.972505 CCACACCCACGAGCACAC 60.973 66.667 0.00 0.00 0.00 3.82
400 401 4.927782 GCCACACCCACGAGCACA 62.928 66.667 0.00 0.00 0.00 4.57
401 402 4.927782 TGCCACACCCACGAGCAC 62.928 66.667 0.00 0.00 0.00 4.40
402 403 3.952508 ATGCCACACCCACGAGCA 61.953 61.111 0.00 0.00 37.94 4.26
403 404 3.434319 CATGCCACACCCACGAGC 61.434 66.667 0.00 0.00 0.00 5.03
404 405 2.032528 ACATGCCACACCCACGAG 59.967 61.111 0.00 0.00 0.00 4.18
405 406 2.281414 CACATGCCACACCCACGA 60.281 61.111 0.00 0.00 0.00 4.35
406 407 3.364441 CCACATGCCACACCCACG 61.364 66.667 0.00 0.00 0.00 4.94
407 408 1.805428 GAACCACATGCCACACCCAC 61.805 60.000 0.00 0.00 0.00 4.61
408 409 1.530419 GAACCACATGCCACACCCA 60.530 57.895 0.00 0.00 0.00 4.51
409 410 2.625823 CGAACCACATGCCACACCC 61.626 63.158 0.00 0.00 0.00 4.61
410 411 1.852067 GACGAACCACATGCCACACC 61.852 60.000 0.00 0.00 0.00 4.16
411 412 0.884704 AGACGAACCACATGCCACAC 60.885 55.000 0.00 0.00 0.00 3.82
412 413 0.884259 CAGACGAACCACATGCCACA 60.884 55.000 0.00 0.00 0.00 4.17
413 414 0.884704 ACAGACGAACCACATGCCAC 60.885 55.000 0.00 0.00 0.00 5.01
414 415 0.884259 CACAGACGAACCACATGCCA 60.884 55.000 0.00 0.00 0.00 4.92
415 416 0.602638 TCACAGACGAACCACATGCC 60.603 55.000 0.00 0.00 0.00 4.40
416 417 0.792640 CTCACAGACGAACCACATGC 59.207 55.000 0.00 0.00 0.00 4.06
417 418 1.270305 ACCTCACAGACGAACCACATG 60.270 52.381 0.00 0.00 0.00 3.21
418 419 1.048601 ACCTCACAGACGAACCACAT 58.951 50.000 0.00 0.00 0.00 3.21
419 420 1.694844 TACCTCACAGACGAACCACA 58.305 50.000 0.00 0.00 0.00 4.17
420 421 2.806608 TTACCTCACAGACGAACCAC 57.193 50.000 0.00 0.00 0.00 4.16
421 422 4.345859 AATTTACCTCACAGACGAACCA 57.654 40.909 0.00 0.00 0.00 3.67
422 423 5.164022 CGTAAATTTACCTCACAGACGAACC 60.164 44.000 20.08 0.00 0.00 3.62
423 424 5.403466 ACGTAAATTTACCTCACAGACGAAC 59.597 40.000 20.08 0.00 0.00 3.95
424 425 5.531634 ACGTAAATTTACCTCACAGACGAA 58.468 37.500 20.08 0.00 0.00 3.85
425 426 5.125100 ACGTAAATTTACCTCACAGACGA 57.875 39.130 20.08 0.00 0.00 4.20
426 427 5.403166 TGAACGTAAATTTACCTCACAGACG 59.597 40.000 20.08 11.69 0.00 4.18
427 428 6.774354 TGAACGTAAATTTACCTCACAGAC 57.226 37.500 20.08 7.71 0.00 3.51
428 429 6.987992 AGTTGAACGTAAATTTACCTCACAGA 59.012 34.615 20.08 7.86 0.00 3.41
429 430 7.170998 AGAGTTGAACGTAAATTTACCTCACAG 59.829 37.037 20.08 9.30 0.00 3.66
430 431 6.987992 AGAGTTGAACGTAAATTTACCTCACA 59.012 34.615 20.08 13.02 0.00 3.58
431 432 7.417496 AGAGTTGAACGTAAATTTACCTCAC 57.583 36.000 20.08 15.72 0.00 3.51
432 433 8.441312 AAAGAGTTGAACGTAAATTTACCTCA 57.559 30.769 20.08 18.71 0.00 3.86
433 434 8.771766 AGAAAGAGTTGAACGTAAATTTACCTC 58.228 33.333 20.08 17.86 0.00 3.85
434 435 8.672823 AGAAAGAGTTGAACGTAAATTTACCT 57.327 30.769 20.08 11.38 0.00 3.08
435 436 9.726232 AAAGAAAGAGTTGAACGTAAATTTACC 57.274 29.630 20.08 8.94 0.00 2.85
437 438 9.940166 GGAAAGAAAGAGTTGAACGTAAATTTA 57.060 29.630 0.00 0.00 0.00 1.40
438 439 8.683615 AGGAAAGAAAGAGTTGAACGTAAATTT 58.316 29.630 0.00 0.00 0.00 1.82
439 440 8.221965 AGGAAAGAAAGAGTTGAACGTAAATT 57.778 30.769 0.00 0.00 0.00 1.82
440 441 7.803279 AGGAAAGAAAGAGTTGAACGTAAAT 57.197 32.000 0.00 0.00 0.00 1.40
441 442 7.983484 ACTAGGAAAGAAAGAGTTGAACGTAAA 59.017 33.333 0.00 0.00 0.00 2.01
442 443 7.437267 CACTAGGAAAGAAAGAGTTGAACGTAA 59.563 37.037 0.00 0.00 0.00 3.18
443 444 6.921857 CACTAGGAAAGAAAGAGTTGAACGTA 59.078 38.462 0.00 0.00 0.00 3.57
444 445 5.753921 CACTAGGAAAGAAAGAGTTGAACGT 59.246 40.000 0.00 0.00 0.00 3.99
445 446 5.177696 CCACTAGGAAAGAAAGAGTTGAACG 59.822 44.000 0.00 0.00 36.89 3.95
446 447 6.056236 ACCACTAGGAAAGAAAGAGTTGAAC 58.944 40.000 0.00 0.00 38.69 3.18
447 448 6.248569 ACCACTAGGAAAGAAAGAGTTGAA 57.751 37.500 0.00 0.00 38.69 2.69
448 449 5.888982 ACCACTAGGAAAGAAAGAGTTGA 57.111 39.130 0.00 0.00 38.69 3.18
449 450 5.823045 ACAACCACTAGGAAAGAAAGAGTTG 59.177 40.000 0.00 0.00 38.69 3.16
450 451 5.823045 CACAACCACTAGGAAAGAAAGAGTT 59.177 40.000 0.00 0.00 38.69 3.01
451 452 5.368989 CACAACCACTAGGAAAGAAAGAGT 58.631 41.667 0.00 0.00 38.69 3.24
452 453 4.757149 CCACAACCACTAGGAAAGAAAGAG 59.243 45.833 0.00 0.00 38.69 2.85
453 454 4.714632 CCACAACCACTAGGAAAGAAAGA 58.285 43.478 0.00 0.00 38.69 2.52
454 455 3.253432 GCCACAACCACTAGGAAAGAAAG 59.747 47.826 0.00 0.00 38.69 2.62
455 456 3.117663 AGCCACAACCACTAGGAAAGAAA 60.118 43.478 0.00 0.00 38.69 2.52
456 457 2.441750 AGCCACAACCACTAGGAAAGAA 59.558 45.455 0.00 0.00 38.69 2.52
457 458 2.054799 AGCCACAACCACTAGGAAAGA 58.945 47.619 0.00 0.00 38.69 2.52
458 459 2.154462 CAGCCACAACCACTAGGAAAG 58.846 52.381 0.00 0.00 38.69 2.62
459 460 1.493022 ACAGCCACAACCACTAGGAAA 59.507 47.619 0.00 0.00 38.69 3.13
460 461 1.136828 ACAGCCACAACCACTAGGAA 58.863 50.000 0.00 0.00 38.69 3.36
461 462 0.396435 CACAGCCACAACCACTAGGA 59.604 55.000 0.00 0.00 38.69 2.94
462 463 0.606401 CCACAGCCACAACCACTAGG 60.606 60.000 0.00 0.00 42.21 3.02
463 464 1.237285 GCCACAGCCACAACCACTAG 61.237 60.000 0.00 0.00 0.00 2.57
464 465 1.228124 GCCACAGCCACAACCACTA 60.228 57.895 0.00 0.00 0.00 2.74
465 466 2.519302 GCCACAGCCACAACCACT 60.519 61.111 0.00 0.00 0.00 4.00
466 467 3.964875 CGCCACAGCCACAACCAC 61.965 66.667 0.00 0.00 34.57 4.16
467 468 4.497984 ACGCCACAGCCACAACCA 62.498 61.111 0.00 0.00 34.57 3.67
468 469 3.964875 CACGCCACAGCCACAACC 61.965 66.667 0.00 0.00 34.57 3.77
469 470 3.209097 ACACGCCACAGCCACAAC 61.209 61.111 0.00 0.00 34.57 3.32
470 471 2.956799 ATCACACGCCACAGCCACAA 62.957 55.000 0.00 0.00 34.57 3.33
471 472 2.956799 AATCACACGCCACAGCCACA 62.957 55.000 0.00 0.00 34.57 4.17
472 473 2.187599 GAATCACACGCCACAGCCAC 62.188 60.000 0.00 0.00 34.57 5.01
473 474 1.965930 GAATCACACGCCACAGCCA 60.966 57.895 0.00 0.00 34.57 4.75
474 475 2.870372 GAATCACACGCCACAGCC 59.130 61.111 0.00 0.00 34.57 4.85
475 476 2.476051 CGAATCACACGCCACAGC 59.524 61.111 0.00 0.00 0.00 4.40
476 477 3.027170 GCCGAATCACACGCCACAG 62.027 63.158 0.00 0.00 0.00 3.66
477 478 3.047280 GCCGAATCACACGCCACA 61.047 61.111 0.00 0.00 0.00 4.17
478 479 2.742372 AGCCGAATCACACGCCAC 60.742 61.111 0.00 0.00 0.00 5.01
479 480 2.741985 CAGCCGAATCACACGCCA 60.742 61.111 0.00 0.00 0.00 5.69
480 481 3.499737 CCAGCCGAATCACACGCC 61.500 66.667 0.00 0.00 0.00 5.68
481 482 3.499737 CCCAGCCGAATCACACGC 61.500 66.667 0.00 0.00 0.00 5.34
482 483 2.819595 CCCCAGCCGAATCACACG 60.820 66.667 0.00 0.00 0.00 4.49
483 484 2.040544 CACCCCAGCCGAATCACAC 61.041 63.158 0.00 0.00 0.00 3.82
484 485 2.184020 CTCACCCCAGCCGAATCACA 62.184 60.000 0.00 0.00 0.00 3.58
485 486 1.450312 CTCACCCCAGCCGAATCAC 60.450 63.158 0.00 0.00 0.00 3.06
486 487 0.982852 ATCTCACCCCAGCCGAATCA 60.983 55.000 0.00 0.00 0.00 2.57
487 488 0.181350 AATCTCACCCCAGCCGAATC 59.819 55.000 0.00 0.00 0.00 2.52
488 489 0.181350 GAATCTCACCCCAGCCGAAT 59.819 55.000 0.00 0.00 0.00 3.34
489 490 0.909610 AGAATCTCACCCCAGCCGAA 60.910 55.000 0.00 0.00 0.00 4.30
490 491 0.909610 AAGAATCTCACCCCAGCCGA 60.910 55.000 0.00 0.00 0.00 5.54
491 492 0.462759 GAAGAATCTCACCCCAGCCG 60.463 60.000 0.00 0.00 0.00 5.52
492 493 0.620556 TGAAGAATCTCACCCCAGCC 59.379 55.000 0.00 0.00 0.00 4.85
493 494 1.743996 GTGAAGAATCTCACCCCAGC 58.256 55.000 2.74 0.00 39.93 4.85
499 500 1.630878 ACCCAGGGTGAAGAATCTCAC 59.369 52.381 11.70 4.87 44.21 3.51
500 501 2.044793 ACCCAGGGTGAAGAATCTCA 57.955 50.000 11.70 0.00 32.98 3.27
511 512 1.905512 GCTATTCGTCACCCAGGGT 59.094 57.895 4.76 4.76 35.62 4.34
512 513 1.227263 CGCTATTCGTCACCCAGGG 60.227 63.158 2.85 2.85 0.00 4.45
513 514 0.389391 ATCGCTATTCGTCACCCAGG 59.611 55.000 0.00 0.00 39.67 4.45
514 515 1.860950 CAATCGCTATTCGTCACCCAG 59.139 52.381 0.00 0.00 39.67 4.45
515 516 1.478916 TCAATCGCTATTCGTCACCCA 59.521 47.619 0.00 0.00 39.67 4.51
516 517 1.859080 GTCAATCGCTATTCGTCACCC 59.141 52.381 0.00 0.00 39.67 4.61
517 518 2.789893 GAGTCAATCGCTATTCGTCACC 59.210 50.000 0.00 0.00 39.67 4.02
518 519 3.483922 CAGAGTCAATCGCTATTCGTCAC 59.516 47.826 0.00 0.00 39.67 3.67
519 520 3.128764 ACAGAGTCAATCGCTATTCGTCA 59.871 43.478 0.00 0.00 39.67 4.35
520 521 3.483922 CACAGAGTCAATCGCTATTCGTC 59.516 47.826 0.00 0.00 39.67 4.20
521 522 3.439293 CACAGAGTCAATCGCTATTCGT 58.561 45.455 0.00 0.00 39.67 3.85
522 523 2.791560 CCACAGAGTCAATCGCTATTCG 59.208 50.000 0.00 0.00 40.15 3.34
523 524 3.126831 CCCACAGAGTCAATCGCTATTC 58.873 50.000 0.00 0.00 0.00 1.75
524 525 2.501723 ACCCACAGAGTCAATCGCTATT 59.498 45.455 0.00 0.00 0.00 1.73
525 526 2.111384 ACCCACAGAGTCAATCGCTAT 58.889 47.619 0.00 0.00 0.00 2.97
526 527 1.557099 ACCCACAGAGTCAATCGCTA 58.443 50.000 0.00 0.00 0.00 4.26
527 528 0.687354 AACCCACAGAGTCAATCGCT 59.313 50.000 0.00 0.00 0.00 4.93
528 529 1.079503 GAACCCACAGAGTCAATCGC 58.920 55.000 0.00 0.00 0.00 4.58
529 530 2.069273 GTGAACCCACAGAGTCAATCG 58.931 52.381 0.00 0.00 42.72 3.34
539 540 0.181587 ATTGTGACGGTGAACCCACA 59.818 50.000 7.29 7.29 44.93 4.17
565 566 9.959749 AAACTGAAAGCGTAAATTTATGAGAAA 57.040 25.926 19.46 2.04 37.60 2.52
613 616 5.180271 GGACGGATGAAATTTAGTACCACA 58.820 41.667 0.00 0.00 0.00 4.17
629 634 3.566322 TGTGAAAACGAAATTGGACGGAT 59.434 39.130 0.00 0.00 0.00 4.18
642 647 4.245660 TCTGATAGGAAGCTGTGAAAACG 58.754 43.478 0.00 0.00 0.00 3.60
657 662 5.738208 GCAAATTTTCTGGCCCATCTGATAG 60.738 44.000 0.00 0.00 0.00 2.08
663 668 4.374399 CATAGCAAATTTTCTGGCCCATC 58.626 43.478 0.00 0.00 0.00 3.51
805 811 8.575589 TGCAGACTGTATTTCAAACAAACATAT 58.424 29.630 3.99 0.00 0.00 1.78
828 835 6.327365 TGGATAAGATGAATTAGAGGACTGCA 59.673 38.462 0.00 0.00 0.00 4.41
832 839 9.620259 AAGTTTGGATAAGATGAATTAGAGGAC 57.380 33.333 0.00 0.00 0.00 3.85
858 865 0.321298 GGCGTTGCTGGAAAGGTAGA 60.321 55.000 0.00 0.00 0.00 2.59
861 868 2.978010 CGGCGTTGCTGGAAAGGT 60.978 61.111 0.00 0.00 0.00 3.50
876 883 4.760047 CCCGTCAACTGCCTCCGG 62.760 72.222 0.00 0.00 38.39 5.14
922 935 2.110006 GCCTTCTCCTCCATCGCC 59.890 66.667 0.00 0.00 0.00 5.54
926 939 2.427245 CGTCCGCCTTCTCCTCCAT 61.427 63.158 0.00 0.00 0.00 3.41
1044 1057 0.677731 CCATGAACACCCACGAGCAT 60.678 55.000 0.00 0.00 0.00 3.79
1055 1068 2.025981 CACCTTCCATCCTCCATGAACA 60.026 50.000 0.00 0.00 33.80 3.18
1086 1099 3.376078 GGTCGGCGTACCCACAGA 61.376 66.667 6.85 0.00 33.02 3.41
1128 1141 4.779733 GAGAGGACTGGCGGGGGA 62.780 72.222 0.00 0.00 0.00 4.81
1131 1144 3.465403 CTGGAGAGGACTGGCGGG 61.465 72.222 0.00 0.00 0.00 6.13
1178 1191 3.118408 TCACAACACAGCAGTAGGAAGTT 60.118 43.478 0.00 0.00 0.00 2.66
1183 1196 3.058016 CCAAATCACAACACAGCAGTAGG 60.058 47.826 0.00 0.00 0.00 3.18
1186 1199 2.653726 TCCAAATCACAACACAGCAGT 58.346 42.857 0.00 0.00 0.00 4.40
1210 1223 1.306056 ATGGCCGGCCTCCAATTTT 60.306 52.632 43.34 16.52 37.13 1.82
1291 1304 7.385205 CCGTGATCCGAATAACTATTCTGATTT 59.615 37.037 14.05 0.00 42.66 2.17
1335 1348 1.003112 TTCCAAACATCCCGACCGG 60.003 57.895 0.00 0.00 0.00 5.28
1349 1362 1.202486 GCTATCGGTTCGGATGTTCCA 60.202 52.381 3.67 0.00 35.91 3.53
1350 1363 1.068741 AGCTATCGGTTCGGATGTTCC 59.931 52.381 0.00 0.00 0.00 3.62
1356 1369 1.667236 TCGTTAGCTATCGGTTCGGA 58.333 50.000 20.87 1.40 0.00 4.55
1382 1395 2.750237 GGGATGTGAACGGTGGGC 60.750 66.667 0.00 0.00 0.00 5.36
1385 1398 1.674322 GGTGGGGATGTGAACGGTG 60.674 63.158 0.00 0.00 0.00 4.94
1386 1399 0.545787 TAGGTGGGGATGTGAACGGT 60.546 55.000 0.00 0.00 0.00 4.83
1388 1401 0.107848 GGTAGGTGGGGATGTGAACG 60.108 60.000 0.00 0.00 0.00 3.95
1389 1402 0.107848 CGGTAGGTGGGGATGTGAAC 60.108 60.000 0.00 0.00 0.00 3.18
1390 1403 1.906105 GCGGTAGGTGGGGATGTGAA 61.906 60.000 0.00 0.00 0.00 3.18
1391 1404 2.363975 GCGGTAGGTGGGGATGTGA 61.364 63.158 0.00 0.00 0.00 3.58
1392 1405 1.983119 ATGCGGTAGGTGGGGATGTG 61.983 60.000 0.00 0.00 0.00 3.21
1393 1406 1.692749 ATGCGGTAGGTGGGGATGT 60.693 57.895 0.00 0.00 0.00 3.06
1411 1424 0.563173 ATCGAGGGGAGATTGGGAGA 59.437 55.000 0.00 0.00 0.00 3.71
1486 1499 3.842923 AGCGGTGCGAGGGATCAG 61.843 66.667 0.00 0.00 0.00 2.90
1658 1696 2.496817 CCTTCTTCCTCTCCGCCG 59.503 66.667 0.00 0.00 0.00 6.46
1778 1816 1.904378 CTAGCCGCTCCTAGTCCCC 60.904 68.421 0.00 0.00 32.09 4.81
2023 2061 2.102252 CTGTCTATTGGGAGCCTCAGAC 59.898 54.545 2.96 2.96 34.39 3.51
2306 2347 9.612066 TTTTTCAAACAGAAGAATAAAGGCATT 57.388 25.926 0.00 0.00 37.57 3.56
2322 2363 8.819974 GCTTCAGAATTTCAGATTTTTCAAACA 58.180 29.630 0.00 0.00 0.00 2.83
2328 2369 6.421801 CGGTTGCTTCAGAATTTCAGATTTTT 59.578 34.615 0.00 0.00 0.00 1.94
2419 2461 8.982723 ACACAGGTTCACATTAGTATCTCTATT 58.017 33.333 0.00 0.00 0.00 1.73
2561 2604 5.359756 TGTCTTCCATATGATGTTCTTCCG 58.640 41.667 3.65 0.00 0.00 4.30
2636 2685 2.281484 GAAGCGGTTGTCCAGGCA 60.281 61.111 3.70 0.00 0.00 4.75
2868 2949 6.599638 AGAAGCTATTACTTGTGTCCCAATTC 59.400 38.462 0.00 0.00 31.20 2.17
2996 3081 1.557832 TCACCCCTAACCTTCCGAATG 59.442 52.381 0.00 0.00 0.00 2.67
3008 3093 2.168496 CTTCTCAGTTCGTCACCCCTA 58.832 52.381 0.00 0.00 0.00 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.