Multiple sequence alignment - TraesCS7A01G284600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G284600 chr7A 100.000 6633 0 0 1 6633 323481806 323475174 0.000000e+00 12249.0
1 TraesCS7A01G284600 chr7A 91.626 203 16 1 4425 4626 323477342 323477140 5.070000e-71 279.0
2 TraesCS7A01G284600 chr7A 91.626 203 16 1 4465 4667 323477382 323477181 5.070000e-71 279.0
3 TraesCS7A01G284600 chr7A 89.256 121 12 1 4547 4667 323477382 323477263 4.140000e-32 150.0
4 TraesCS7A01G284600 chr7D 97.570 1975 45 3 2244 4217 285262037 285260065 0.000000e+00 3378.0
5 TraesCS7A01G284600 chr7D 95.472 1789 64 3 4848 6633 285257927 285256153 0.000000e+00 2839.0
6 TraesCS7A01G284600 chr7D 80.619 1228 199 26 4840 6036 375292185 375290966 0.000000e+00 913.0
7 TraesCS7A01G284600 chr7D 93.688 602 25 9 602 1192 572182754 572183353 0.000000e+00 889.0
8 TraesCS7A01G284600 chr7D 96.931 391 11 1 4218 4607 285258318 285257928 0.000000e+00 654.0
9 TraesCS7A01G284600 chr7D 89.474 399 21 8 1190 1569 572185069 572185465 1.000000e-132 484.0
10 TraesCS7A01G284600 chr7D 93.919 296 17 1 1648 1943 285267361 285267067 4.720000e-121 446.0
11 TraesCS7A01G284600 chr7D 91.748 206 14 1 191 393 285319005 285318800 3.920000e-72 283.0
12 TraesCS7A01G284600 chr7D 93.617 188 11 1 406 592 572185535 572185348 5.070000e-71 279.0
13 TraesCS7A01G284600 chr7D 91.710 193 14 2 2075 2266 376090483 376090674 3.940000e-67 267.0
14 TraesCS7A01G284600 chr7D 90.863 197 15 2 2070 2265 235573455 235573261 1.830000e-65 261.0
15 TraesCS7A01G284600 chr7D 89.785 186 19 0 407 592 109614006 109613821 8.600000e-59 239.0
16 TraesCS7A01G284600 chr7D 83.908 261 29 10 407 656 109612747 109613005 3.090000e-58 237.0
17 TraesCS7A01G284600 chr7D 88.333 120 13 1 950 1069 89279542 89279660 6.930000e-30 143.0
18 TraesCS7A01G284600 chr7D 90.909 88 5 2 1 87 285413597 285413512 1.510000e-21 115.0
19 TraesCS7A01G284600 chr7D 89.535 86 8 1 79 164 285319091 285319007 2.530000e-19 108.0
20 TraesCS7A01G284600 chr7D 85.333 75 11 0 2000 2074 590153958 590153884 1.980000e-10 78.7
21 TraesCS7A01G284600 chrUn 96.662 1977 46 7 2244 4217 85423499 85425458 0.000000e+00 3267.0
22 TraesCS7A01G284600 chrUn 96.662 1977 46 7 2244 4217 85972999 85971040 0.000000e+00 3267.0
23 TraesCS7A01G284600 chrUn 97.889 379 8 0 4465 4843 85426360 85426738 0.000000e+00 656.0
24 TraesCS7A01G284600 chrUn 97.889 379 8 0 4465 4843 85970138 85969760 0.000000e+00 656.0
25 TraesCS7A01G284600 chrUn 94.554 404 21 1 4218 4620 85426153 85426556 2.030000e-174 623.0
26 TraesCS7A01G284600 chrUn 94.146 410 23 1 4218 4626 85970345 85969936 2.030000e-174 623.0
27 TraesCS7A01G284600 chrUn 91.463 410 30 3 1 406 85416146 85416554 5.810000e-155 558.0
28 TraesCS7A01G284600 chrUn 91.463 410 30 3 1 406 85980352 85979944 5.810000e-155 558.0
29 TraesCS7A01G284600 chrUn 93.939 165 9 1 1648 1811 85416609 85416773 1.430000e-61 248.0
30 TraesCS7A01G284600 chrUn 93.939 165 9 1 1648 1811 85979889 85979725 1.430000e-61 248.0
31 TraesCS7A01G284600 chrUn 91.304 138 12 0 1811 1948 85418389 85418526 8.780000e-44 189.0
32 TraesCS7A01G284600 chrUn 91.304 138 12 0 1811 1948 85978109 85977972 8.780000e-44 189.0
33 TraesCS7A01G284600 chr2B 92.652 1184 61 10 407 1569 49651886 49653064 0.000000e+00 1681.0
34 TraesCS7A01G284600 chr2B 90.640 203 16 3 2063 2264 161143988 161144188 3.940000e-67 267.0
35 TraesCS7A01G284600 chr2B 91.444 187 15 1 406 592 49653134 49652949 8.540000e-64 255.0
36 TraesCS7A01G284600 chr2B 90.435 115 11 0 1455 1569 49652069 49651955 1.150000e-32 152.0
37 TraesCS7A01G284600 chr6B 91.359 1192 61 17 408 1569 188584204 188585383 0.000000e+00 1592.0
38 TraesCS7A01G284600 chr1D 81.463 1791 272 28 4839 6621 76099448 76101186 0.000000e+00 1413.0
39 TraesCS7A01G284600 chr1D 81.168 1609 287 13 5020 6620 165323621 165325221 0.000000e+00 1279.0
40 TraesCS7A01G284600 chr1D 81.130 1611 281 18 5020 6620 165357990 165359587 0.000000e+00 1269.0
41 TraesCS7A01G284600 chr1D 84.375 1088 150 14 5547 6622 182025647 182024568 0.000000e+00 1050.0
42 TraesCS7A01G284600 chr1D 82.759 116 17 2 1457 1569 26451360 26451245 4.230000e-17 100.0
43 TraesCS7A01G284600 chr4D 81.584 1439 244 16 5199 6625 220460957 220459528 0.000000e+00 1170.0
44 TraesCS7A01G284600 chr4D 81.716 1340 200 24 5315 6622 211168475 211169801 0.000000e+00 1075.0
45 TraesCS7A01G284600 chr4D 80.086 929 148 23 4839 5734 82455979 82455055 0.000000e+00 656.0
46 TraesCS7A01G284600 chr4D 87.719 114 12 2 1457 1569 496383221 496383109 1.500000e-26 132.0
47 TraesCS7A01G284600 chr6D 83.207 1316 174 29 5336 6621 203000611 202999313 0.000000e+00 1162.0
48 TraesCS7A01G284600 chr6D 80.996 1426 219 30 4843 6237 227399917 227398513 0.000000e+00 1085.0
49 TraesCS7A01G284600 chr3D 82.828 1287 190 18 5366 6625 383976994 383975712 0.000000e+00 1123.0
50 TraesCS7A01G284600 chr3D 80.622 1383 226 31 4839 6200 272255466 272254105 0.000000e+00 1031.0
51 TraesCS7A01G284600 chr3D 86.301 219 29 1 4370 4587 43648833 43648615 3.090000e-58 237.0
52 TraesCS7A01G284600 chr3D 88.325 197 19 4 408 602 112701691 112701885 4.000000e-57 233.0
53 TraesCS7A01G284600 chr3D 80.919 283 46 7 1987 2265 19839565 19839843 4.030000e-52 217.0
54 TraesCS7A01G284600 chr3D 84.211 114 16 2 1457 1569 41262538 41262426 7.030000e-20 110.0
55 TraesCS7A01G284600 chr3B 81.250 1264 221 13 4844 6101 388148709 388149962 0.000000e+00 1007.0
56 TraesCS7A01G284600 chr3B 89.848 197 19 1 407 602 241394268 241394072 1.100000e-62 252.0
57 TraesCS7A01G284600 chr4B 80.711 1265 204 21 4839 6073 116339115 116337861 0.000000e+00 948.0
58 TraesCS7A01G284600 chr1B 80.958 814 140 11 4839 5646 311223770 311224574 1.210000e-176 630.0
59 TraesCS7A01G284600 chr1B 96.774 31 1 0 995 1025 655346322 655346352 1.200000e-02 52.8
60 TraesCS7A01G284600 chr7B 81.837 479 67 16 4368 4843 635932335 635931874 1.040000e-102 385.0
61 TraesCS7A01G284600 chr7B 89.894 188 17 2 407 593 691193512 691193326 2.390000e-59 241.0
62 TraesCS7A01G284600 chr5A 96.970 165 5 0 2081 2245 44602572 44602736 1.820000e-70 278.0
63 TraesCS7A01G284600 chr5A 83.813 278 38 3 1974 2245 484559533 484559257 2.370000e-64 257.0
64 TraesCS7A01G284600 chr2D 85.019 267 38 2 2000 2265 650868968 650869233 3.050000e-68 270.0
65 TraesCS7A01G284600 chr2D 80.878 319 42 15 4527 4843 75840852 75840551 4.000000e-57 233.0
66 TraesCS7A01G284600 chr3A 88.372 215 22 3 2051 2264 750494865 750494653 8.540000e-64 255.0
67 TraesCS7A01G284600 chr1A 83.835 266 40 3 2000 2264 368368411 368368674 3.970000e-62 250.0
68 TraesCS7A01G284600 chr5B 84.170 259 31 8 406 656 629948439 629948695 6.650000e-60 243.0
69 TraesCS7A01G284600 chr5B 79.845 258 32 9 1312 1567 629949374 629949613 3.180000e-38 171.0
70 TraesCS7A01G284600 chr5B 80.606 165 18 4 920 1084 56694071 56694221 1.510000e-21 115.0
71 TraesCS7A01G284600 chr5D 80.921 152 26 3 1419 1569 483517527 483517676 4.200000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G284600 chr7A 323475174 323481806 6632 True 12249.000000 12249 100.000000 1 6633 1 chr7A.!!$R1 6632
1 TraesCS7A01G284600 chr7D 285256153 285262037 5884 True 2290.333333 3378 96.657667 2244 6633 3 chr7D.!!$R8 4389
2 TraesCS7A01G284600 chr7D 375290966 375292185 1219 True 913.000000 913 80.619000 4840 6036 1 chr7D.!!$R5 1196
3 TraesCS7A01G284600 chr7D 572182754 572185465 2711 False 686.500000 889 91.581000 602 1569 2 chr7D.!!$F4 967
4 TraesCS7A01G284600 chrUn 85423499 85426738 3239 False 1515.333333 3267 96.368333 2244 4843 3 chrUn.!!$F2 2599
5 TraesCS7A01G284600 chrUn 85969760 85972999 3239 True 1515.333333 3267 96.232333 2244 4843 3 chrUn.!!$R1 2599
6 TraesCS7A01G284600 chrUn 85416146 85418526 2380 False 331.666667 558 92.235333 1 1948 3 chrUn.!!$F1 1947
7 TraesCS7A01G284600 chrUn 85977972 85980352 2380 True 331.666667 558 92.235333 1 1948 3 chrUn.!!$R2 1947
8 TraesCS7A01G284600 chr2B 49651886 49653064 1178 False 1681.000000 1681 92.652000 407 1569 1 chr2B.!!$F1 1162
9 TraesCS7A01G284600 chr2B 49651955 49653134 1179 True 203.500000 255 90.939500 406 1569 2 chr2B.!!$R1 1163
10 TraesCS7A01G284600 chr6B 188584204 188585383 1179 False 1592.000000 1592 91.359000 408 1569 1 chr6B.!!$F1 1161
11 TraesCS7A01G284600 chr1D 76099448 76101186 1738 False 1413.000000 1413 81.463000 4839 6621 1 chr1D.!!$F1 1782
12 TraesCS7A01G284600 chr1D 165323621 165325221 1600 False 1279.000000 1279 81.168000 5020 6620 1 chr1D.!!$F2 1600
13 TraesCS7A01G284600 chr1D 165357990 165359587 1597 False 1269.000000 1269 81.130000 5020 6620 1 chr1D.!!$F3 1600
14 TraesCS7A01G284600 chr1D 182024568 182025647 1079 True 1050.000000 1050 84.375000 5547 6622 1 chr1D.!!$R2 1075
15 TraesCS7A01G284600 chr4D 220459528 220460957 1429 True 1170.000000 1170 81.584000 5199 6625 1 chr4D.!!$R2 1426
16 TraesCS7A01G284600 chr4D 211168475 211169801 1326 False 1075.000000 1075 81.716000 5315 6622 1 chr4D.!!$F1 1307
17 TraesCS7A01G284600 chr4D 82455055 82455979 924 True 656.000000 656 80.086000 4839 5734 1 chr4D.!!$R1 895
18 TraesCS7A01G284600 chr6D 202999313 203000611 1298 True 1162.000000 1162 83.207000 5336 6621 1 chr6D.!!$R1 1285
19 TraesCS7A01G284600 chr6D 227398513 227399917 1404 True 1085.000000 1085 80.996000 4843 6237 1 chr6D.!!$R2 1394
20 TraesCS7A01G284600 chr3D 383975712 383976994 1282 True 1123.000000 1123 82.828000 5366 6625 1 chr3D.!!$R4 1259
21 TraesCS7A01G284600 chr3D 272254105 272255466 1361 True 1031.000000 1031 80.622000 4839 6200 1 chr3D.!!$R3 1361
22 TraesCS7A01G284600 chr3B 388148709 388149962 1253 False 1007.000000 1007 81.250000 4844 6101 1 chr3B.!!$F1 1257
23 TraesCS7A01G284600 chr4B 116337861 116339115 1254 True 948.000000 948 80.711000 4839 6073 1 chr4B.!!$R1 1234
24 TraesCS7A01G284600 chr1B 311223770 311224574 804 False 630.000000 630 80.958000 4839 5646 1 chr1B.!!$F1 807
25 TraesCS7A01G284600 chr5B 629948439 629949613 1174 False 207.000000 243 82.007500 406 1567 2 chr5B.!!$F2 1161

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
78 80 0.758685 CTCGATGCCCCTCCTTCTCT 60.759 60.000 0.0 0.0 0.00 3.10 F
1483 4123 0.751643 ACGTCAGCTTTTGTGGGCTT 60.752 50.000 0.0 0.0 36.59 4.35 F
1710 4374 0.994995 CATGTTCAGCGGAGAAGACG 59.005 55.000 0.0 0.0 0.00 4.18 F
2646 6928 0.322975 AGTGAGACATCTGCCACCAC 59.677 55.000 0.0 0.0 0.00 4.16 F
2650 6932 2.028112 TGAGACATCTGCCACCACTTAC 60.028 50.000 0.0 0.0 0.00 2.34 F
4041 8326 2.396157 GCAACGGTTCGACCCCATC 61.396 63.158 0.0 0.0 33.75 3.51 F
5073 11110 1.202651 ACACTTGGTCTGGTTCTTCCG 60.203 52.381 0.0 0.0 39.52 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1602 4244 0.109342 GGCATCATCCCGGAGTGAAT 59.891 55.000 0.73 0.0 0.00 2.57 R
2319 6600 1.815421 GACCGAATGCGAGCCATGT 60.815 57.895 0.00 0.0 40.82 3.21 R
3176 7459 3.084786 AGGTAGGACTTTCATTTGCAGC 58.915 45.455 0.00 0.0 0.00 5.25 R
4041 8326 3.068165 TGACTCAGGAGGCATTGTATACG 59.932 47.826 0.00 0.0 42.59 3.06 R
4252 10285 3.642848 ACATGCCACAAGTTCTTCCATTT 59.357 39.130 0.00 0.0 0.00 2.32 R
5604 11674 1.136695 TGTTCCTTACGGTGTTGTCGT 59.863 47.619 0.00 0.0 43.64 4.34 R
6064 12139 1.081892 CTCAATGACTTGCTCCCACG 58.918 55.000 0.00 0.0 32.11 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 3.555967 CAGCCCCTACCCTAGCTG 58.444 66.667 0.00 0.00 45.92 4.24
52 53 3.334691 TGCCACTAAGGTTTTCTCATCG 58.665 45.455 0.00 0.00 40.61 3.84
53 54 3.244422 TGCCACTAAGGTTTTCTCATCGT 60.244 43.478 0.00 0.00 40.61 3.73
56 57 4.235360 CACTAAGGTTTTCTCATCGTCGT 58.765 43.478 0.00 0.00 0.00 4.34
78 80 0.758685 CTCGATGCCCCTCCTTCTCT 60.759 60.000 0.00 0.00 0.00 3.10
93 95 2.437085 TCTCTCATCTGGCGTCCTTA 57.563 50.000 0.00 0.00 0.00 2.69
98 100 1.837439 TCATCTGGCGTCCTTATTGGT 59.163 47.619 0.00 0.00 37.07 3.67
116 118 1.481363 GGTTGCTAGTCTAGTGGGGAC 59.519 57.143 8.68 1.50 0.00 4.46
117 119 2.176889 GTTGCTAGTCTAGTGGGGACA 58.823 52.381 8.68 0.00 36.29 4.02
120 122 1.069358 GCTAGTCTAGTGGGGACATGC 59.931 57.143 8.68 0.00 46.14 4.06
158 160 9.708092 GTCTTAGTTCTAGTAGGTCATTGTTTT 57.292 33.333 0.00 0.00 0.00 2.43
171 173 6.609616 AGGTCATTGTTTTCCTTAGGTTTTGA 59.390 34.615 0.00 0.00 0.00 2.69
200 202 1.221840 GCATCGATGAGGTGGTGGT 59.778 57.895 29.20 0.00 0.00 4.16
210 212 3.482436 TGAGGTGGTGGTAAACAATGAC 58.518 45.455 0.00 0.00 0.00 3.06
247 249 4.396790 GTCTCTCTGACCACTACTTACCTG 59.603 50.000 0.00 0.00 39.69 4.00
250 252 5.580998 TCTCTGACCACTACTTACCTGAAT 58.419 41.667 0.00 0.00 0.00 2.57
262 264 8.355913 ACTACTTACCTGAATAACGTATAAGCC 58.644 37.037 0.00 0.00 0.00 4.35
264 266 7.732996 ACTTACCTGAATAACGTATAAGCCAT 58.267 34.615 0.00 0.00 0.00 4.40
276 278 6.827727 ACGTATAAGCCATGAAGGTTATCTT 58.172 36.000 8.95 0.00 40.61 2.40
299 301 8.316214 TCTTTGGATATTGGTAGTTCGTACTTT 58.684 33.333 0.00 0.00 35.78 2.66
311 313 8.253810 GGTAGTTCGTACTTTAATTAAGGAGGT 58.746 37.037 13.73 7.21 38.23 3.85
394 399 7.067494 GGTCCTATTTCAAGATTGCAAGTGTAT 59.933 37.037 4.94 4.72 0.00 2.29
399 404 5.801350 TCAAGATTGCAAGTGTATGCTAC 57.199 39.130 4.94 0.00 46.54 3.58
670 697 2.765807 CCAGAGGTGCCCGATCCT 60.766 66.667 0.00 0.00 36.70 3.24
1070 1407 1.702299 CAGAATTCGACCGCGTCAC 59.298 57.895 4.92 0.00 38.98 3.67
1101 1438 2.742372 GACGTGCGGGTCATGCTT 60.742 61.111 0.00 0.00 36.91 3.91
1242 3301 3.110178 GGTGTAGGTGCGCGTGTC 61.110 66.667 8.43 0.00 0.00 3.67
1255 3314 1.813859 CGTGTCGGGGAGATAGCAA 59.186 57.895 0.00 0.00 0.00 3.91
1340 3649 1.198713 GAGGACAGATGAGGAGGCAA 58.801 55.000 0.00 0.00 0.00 4.52
1341 3650 1.556911 GAGGACAGATGAGGAGGCAAA 59.443 52.381 0.00 0.00 0.00 3.68
1410 4045 4.153655 GTCTTTGTGAAATTACGGGGACTC 59.846 45.833 0.00 0.00 0.00 3.36
1453 4092 3.617669 GTCAAACACCGTCAAATGTCAG 58.382 45.455 0.00 0.00 0.00 3.51
1483 4123 0.751643 ACGTCAGCTTTTGTGGGCTT 60.752 50.000 0.00 0.00 36.59 4.35
1569 4211 3.833442 CCTCGGAATTAGTGGTTTTTGC 58.167 45.455 0.00 0.00 0.00 3.68
1570 4212 3.254657 CCTCGGAATTAGTGGTTTTTGCA 59.745 43.478 0.00 0.00 0.00 4.08
1571 4213 4.261825 CCTCGGAATTAGTGGTTTTTGCAA 60.262 41.667 0.00 0.00 0.00 4.08
1572 4214 4.612943 TCGGAATTAGTGGTTTTTGCAAC 58.387 39.130 0.00 0.00 0.00 4.17
1573 4215 3.738791 CGGAATTAGTGGTTTTTGCAACC 59.261 43.478 0.00 0.00 40.67 3.77
1574 4216 4.500716 CGGAATTAGTGGTTTTTGCAACCT 60.501 41.667 0.00 0.00 40.88 3.50
1575 4217 5.364778 GGAATTAGTGGTTTTTGCAACCTT 58.635 37.500 0.00 0.00 40.88 3.50
1576 4218 6.517605 GGAATTAGTGGTTTTTGCAACCTTA 58.482 36.000 0.00 0.00 40.88 2.69
1577 4219 6.987404 GGAATTAGTGGTTTTTGCAACCTTAA 59.013 34.615 0.00 2.66 40.88 1.85
1578 4220 7.170828 GGAATTAGTGGTTTTTGCAACCTTAAG 59.829 37.037 0.00 0.00 40.88 1.85
1579 4221 3.792401 AGTGGTTTTTGCAACCTTAAGC 58.208 40.909 0.00 1.99 40.88 3.09
1580 4222 3.450817 AGTGGTTTTTGCAACCTTAAGCT 59.549 39.130 0.00 0.00 40.88 3.74
1581 4223 4.081142 AGTGGTTTTTGCAACCTTAAGCTT 60.081 37.500 3.48 3.48 40.88 3.74
1582 4224 4.270084 GTGGTTTTTGCAACCTTAAGCTTC 59.730 41.667 0.00 0.00 40.88 3.86
1583 4225 4.081420 TGGTTTTTGCAACCTTAAGCTTCA 60.081 37.500 0.00 0.00 40.88 3.02
1584 4226 4.873259 GGTTTTTGCAACCTTAAGCTTCAA 59.127 37.500 0.00 0.00 37.34 2.69
1585 4227 5.527214 GGTTTTTGCAACCTTAAGCTTCAAT 59.473 36.000 0.00 0.00 37.34 2.57
1586 4228 6.704050 GGTTTTTGCAACCTTAAGCTTCAATA 59.296 34.615 0.00 0.00 37.34 1.90
1587 4229 7.387673 GGTTTTTGCAACCTTAAGCTTCAATAT 59.612 33.333 0.00 0.00 37.34 1.28
1588 4230 8.435430 GTTTTTGCAACCTTAAGCTTCAATATC 58.565 33.333 0.00 0.00 0.00 1.63
1589 4231 5.484173 TGCAACCTTAAGCTTCAATATCG 57.516 39.130 0.00 0.00 0.00 2.92
1590 4232 5.182487 TGCAACCTTAAGCTTCAATATCGA 58.818 37.500 0.00 0.00 0.00 3.59
1591 4233 5.822519 TGCAACCTTAAGCTTCAATATCGAT 59.177 36.000 0.00 2.16 0.00 3.59
1592 4234 6.989759 TGCAACCTTAAGCTTCAATATCGATA 59.010 34.615 7.75 7.75 0.00 2.92
1593 4235 7.661437 TGCAACCTTAAGCTTCAATATCGATAT 59.339 33.333 12.25 12.25 0.00 1.63
1594 4236 8.507249 GCAACCTTAAGCTTCAATATCGATATT 58.493 33.333 22.22 22.22 33.44 1.28
1614 4256 1.988293 TTTTGCAATTCACTCCGGGA 58.012 45.000 0.00 0.00 0.00 5.14
1633 4275 3.299503 GGATGATGCCCCAAACTAACAT 58.700 45.455 0.00 0.00 0.00 2.71
1641 4283 4.764823 TGCCCCAAACTAACATTACTTCAG 59.235 41.667 0.00 0.00 0.00 3.02
1701 4365 1.651240 CCCTTGCTCCATGTTCAGCG 61.651 60.000 0.00 0.00 38.59 5.18
1710 4374 0.994995 CATGTTCAGCGGAGAAGACG 59.005 55.000 0.00 0.00 0.00 4.18
1724 4388 6.073548 GCGGAGAAGACGATCAATATGATTTT 60.074 38.462 0.00 0.00 37.20 1.82
1780 4444 6.024049 CGCCTTCTTGTCTTTTCATTGTATC 58.976 40.000 0.00 0.00 0.00 2.24
1781 4445 6.348458 CGCCTTCTTGTCTTTTCATTGTATCA 60.348 38.462 0.00 0.00 0.00 2.15
1829 6110 8.511321 TGATGTAATTCATGTTTAACTGGTCAC 58.489 33.333 0.00 0.00 36.83 3.67
1842 6123 3.305720 ACTGGTCACCTGAGACTTGTAA 58.694 45.455 7.90 0.00 38.57 2.41
1851 6132 5.007724 CACCTGAGACTTGTAACCTTTCAAC 59.992 44.000 0.00 0.00 0.00 3.18
1863 6144 9.492973 TTGTAACCTTTCAACTGTACCTATTAC 57.507 33.333 0.00 0.00 0.00 1.89
1885 6166 8.689251 TTACTATTTTCGTTCAGAGTCATCAG 57.311 34.615 0.00 0.00 0.00 2.90
1890 6171 4.902443 TCGTTCAGAGTCATCAGATACC 57.098 45.455 0.00 0.00 0.00 2.73
1908 6189 8.717717 TCAGATACCCTCTTCATTCACAAATAT 58.282 33.333 0.00 0.00 29.16 1.28
1964 6245 7.675161 TTATCAGATACTCCCTTCAATCACA 57.325 36.000 0.00 0.00 0.00 3.58
1965 6246 6.566079 ATCAGATACTCCCTTCAATCACAA 57.434 37.500 0.00 0.00 0.00 3.33
1966 6247 6.373005 TCAGATACTCCCTTCAATCACAAA 57.627 37.500 0.00 0.00 0.00 2.83
1967 6248 6.962182 TCAGATACTCCCTTCAATCACAAAT 58.038 36.000 0.00 0.00 0.00 2.32
1968 6249 8.089625 TCAGATACTCCCTTCAATCACAAATA 57.910 34.615 0.00 0.00 0.00 1.40
1969 6250 8.717717 TCAGATACTCCCTTCAATCACAAATAT 58.282 33.333 0.00 0.00 0.00 1.28
1972 6253 9.778741 GATACTCCCTTCAATCACAAATATACA 57.221 33.333 0.00 0.00 0.00 2.29
1975 6256 8.906867 ACTCCCTTCAATCACAAATATACAATG 58.093 33.333 0.00 0.00 0.00 2.82
1976 6257 8.821686 TCCCTTCAATCACAAATATACAATGT 57.178 30.769 0.00 0.00 0.00 2.71
1977 6258 9.253832 TCCCTTCAATCACAAATATACAATGTT 57.746 29.630 0.00 0.00 0.00 2.71
2023 6304 9.958285 GAATGTATATATACACATTTCAGTGCG 57.042 33.333 24.43 0.00 45.11 5.34
2024 6305 9.489084 AATGTATATATACACATTTCAGTGCGT 57.511 29.630 24.43 4.68 45.11 5.24
2025 6306 8.515473 TGTATATATACACATTTCAGTGCGTC 57.485 34.615 19.51 0.00 43.23 5.19
2026 6307 8.357402 TGTATATATACACATTTCAGTGCGTCT 58.643 33.333 19.51 0.00 43.23 4.18
2027 6308 9.836076 GTATATATACACATTTCAGTGCGTCTA 57.164 33.333 16.50 0.00 43.23 2.59
2029 6310 9.929180 ATATATACACATTTCAGTGCGTCTATT 57.071 29.630 0.00 0.00 43.23 1.73
2030 6311 6.985188 ATACACATTTCAGTGCGTCTATTT 57.015 33.333 0.00 0.00 43.23 1.40
2031 6312 9.758651 ATATACACATTTCAGTGCGTCTATTTA 57.241 29.630 0.00 0.00 43.23 1.40
2032 6313 6.165659 ACACATTTCAGTGCGTCTATTTAC 57.834 37.500 0.00 0.00 43.23 2.01
2033 6314 5.932303 ACACATTTCAGTGCGTCTATTTACT 59.068 36.000 0.00 0.00 43.23 2.24
2034 6315 6.090898 ACACATTTCAGTGCGTCTATTTACTC 59.909 38.462 0.00 0.00 43.23 2.59
2035 6316 6.090763 CACATTTCAGTGCGTCTATTTACTCA 59.909 38.462 0.00 0.00 32.04 3.41
2036 6317 6.818644 ACATTTCAGTGCGTCTATTTACTCAT 59.181 34.615 0.00 0.00 0.00 2.90
2037 6318 7.334421 ACATTTCAGTGCGTCTATTTACTCATT 59.666 33.333 0.00 0.00 0.00 2.57
2038 6319 7.667043 TTTCAGTGCGTCTATTTACTCATTT 57.333 32.000 0.00 0.00 0.00 2.32
2039 6320 6.887376 TCAGTGCGTCTATTTACTCATTTC 57.113 37.500 0.00 0.00 0.00 2.17
2040 6321 6.394809 TCAGTGCGTCTATTTACTCATTTCA 58.605 36.000 0.00 0.00 0.00 2.69
2041 6322 6.531594 TCAGTGCGTCTATTTACTCATTTCAG 59.468 38.462 0.00 0.00 0.00 3.02
2042 6323 6.311445 CAGTGCGTCTATTTACTCATTTCAGT 59.689 38.462 0.00 0.00 0.00 3.41
2043 6324 6.531948 AGTGCGTCTATTTACTCATTTCAGTC 59.468 38.462 0.00 0.00 0.00 3.51
2044 6325 6.310467 GTGCGTCTATTTACTCATTTCAGTCA 59.690 38.462 0.00 0.00 0.00 3.41
2045 6326 6.871492 TGCGTCTATTTACTCATTTCAGTCAA 59.129 34.615 0.00 0.00 0.00 3.18
2046 6327 7.549134 TGCGTCTATTTACTCATTTCAGTCAAT 59.451 33.333 0.00 0.00 0.00 2.57
2047 6328 9.031360 GCGTCTATTTACTCATTTCAGTCAATA 57.969 33.333 0.00 0.00 0.00 1.90
2091 6372 7.286215 TCTAAAACATCTTATACTCCCTCCG 57.714 40.000 0.00 0.00 0.00 4.63
2092 6373 5.952347 AAAACATCTTATACTCCCTCCGT 57.048 39.130 0.00 0.00 0.00 4.69
2093 6374 5.952347 AAACATCTTATACTCCCTCCGTT 57.048 39.130 0.00 0.00 0.00 4.44
2094 6375 5.532664 AACATCTTATACTCCCTCCGTTC 57.467 43.478 0.00 0.00 0.00 3.95
2095 6376 3.896272 ACATCTTATACTCCCTCCGTTCC 59.104 47.826 0.00 0.00 0.00 3.62
2096 6377 3.967467 TCTTATACTCCCTCCGTTCCT 57.033 47.619 0.00 0.00 0.00 3.36
2097 6378 5.163012 ACATCTTATACTCCCTCCGTTCCTA 60.163 44.000 0.00 0.00 0.00 2.94
2098 6379 5.393068 TCTTATACTCCCTCCGTTCCTAA 57.607 43.478 0.00 0.00 0.00 2.69
2099 6380 5.769835 TCTTATACTCCCTCCGTTCCTAAA 58.230 41.667 0.00 0.00 0.00 1.85
2100 6381 5.595952 TCTTATACTCCCTCCGTTCCTAAAC 59.404 44.000 0.00 0.00 0.00 2.01
2101 6382 2.019807 ACTCCCTCCGTTCCTAAACA 57.980 50.000 0.00 0.00 34.93 2.83
2102 6383 2.547990 ACTCCCTCCGTTCCTAAACAT 58.452 47.619 0.00 0.00 34.93 2.71
2103 6384 2.910977 ACTCCCTCCGTTCCTAAACATT 59.089 45.455 0.00 0.00 34.93 2.71
2104 6385 3.329814 ACTCCCTCCGTTCCTAAACATTT 59.670 43.478 0.00 0.00 34.93 2.32
2105 6386 3.681593 TCCCTCCGTTCCTAAACATTTG 58.318 45.455 0.00 0.00 34.93 2.32
2106 6387 3.073356 TCCCTCCGTTCCTAAACATTTGT 59.927 43.478 0.00 0.00 34.93 2.83
2107 6388 3.439129 CCCTCCGTTCCTAAACATTTGTC 59.561 47.826 0.00 0.00 34.93 3.18
2108 6389 4.324267 CCTCCGTTCCTAAACATTTGTCT 58.676 43.478 0.00 0.00 34.93 3.41
2109 6390 4.760204 CCTCCGTTCCTAAACATTTGTCTT 59.240 41.667 0.00 0.00 34.93 3.01
2110 6391 5.240844 CCTCCGTTCCTAAACATTTGTCTTT 59.759 40.000 0.00 0.00 34.93 2.52
2111 6392 6.308371 TCCGTTCCTAAACATTTGTCTTTC 57.692 37.500 0.00 0.00 34.93 2.62
2112 6393 6.059484 TCCGTTCCTAAACATTTGTCTTTCT 58.941 36.000 0.00 0.00 34.93 2.52
2113 6394 7.218614 TCCGTTCCTAAACATTTGTCTTTCTA 58.781 34.615 0.00 0.00 34.93 2.10
2114 6395 7.386848 TCCGTTCCTAAACATTTGTCTTTCTAG 59.613 37.037 0.00 0.00 34.93 2.43
2115 6396 7.386848 CCGTTCCTAAACATTTGTCTTTCTAGA 59.613 37.037 0.00 0.00 34.93 2.43
2116 6397 8.436200 CGTTCCTAAACATTTGTCTTTCTAGAG 58.564 37.037 0.00 0.00 34.93 2.43
2117 6398 9.490379 GTTCCTAAACATTTGTCTTTCTAGAGA 57.510 33.333 0.00 0.00 35.36 3.10
2125 6406 9.342308 ACATTTGTCTTTCTAGAGATTTCAACA 57.658 29.630 0.00 0.00 0.00 3.33
2128 6409 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
2129 6410 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
2130 6411 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
2131 6412 9.213799 GTCTTTCTAGAGATTTCAACAAGTGAT 57.786 33.333 0.00 0.00 35.70 3.06
2132 6413 9.784531 TCTTTCTAGAGATTTCAACAAGTGATT 57.215 29.630 0.00 0.00 35.70 2.57
2135 6416 9.996554 TTCTAGAGATTTCAACAAGTGATTACA 57.003 29.630 0.00 0.00 35.70 2.41
2139 6420 8.873830 AGAGATTTCAACAAGTGATTACATACG 58.126 33.333 0.00 0.00 35.70 3.06
2140 6421 7.974675 AGATTTCAACAAGTGATTACATACGG 58.025 34.615 0.00 0.00 35.70 4.02
2141 6422 7.822334 AGATTTCAACAAGTGATTACATACGGA 59.178 33.333 0.00 0.00 35.70 4.69
2142 6423 6.961359 TTCAACAAGTGATTACATACGGAG 57.039 37.500 0.00 0.00 35.70 4.63
2143 6424 4.868171 TCAACAAGTGATTACATACGGAGC 59.132 41.667 0.00 0.00 0.00 4.70
2144 6425 4.465632 ACAAGTGATTACATACGGAGCA 57.534 40.909 0.00 0.00 0.00 4.26
2145 6426 4.827692 ACAAGTGATTACATACGGAGCAA 58.172 39.130 0.00 0.00 0.00 3.91
2146 6427 5.242434 ACAAGTGATTACATACGGAGCAAA 58.758 37.500 0.00 0.00 0.00 3.68
2147 6428 5.703592 ACAAGTGATTACATACGGAGCAAAA 59.296 36.000 0.00 0.00 0.00 2.44
2148 6429 6.374333 ACAAGTGATTACATACGGAGCAAAAT 59.626 34.615 0.00 0.00 0.00 1.82
2149 6430 6.363577 AGTGATTACATACGGAGCAAAATG 57.636 37.500 0.00 0.00 0.00 2.32
2150 6431 6.112734 AGTGATTACATACGGAGCAAAATGA 58.887 36.000 0.00 0.00 0.00 2.57
2151 6432 6.258727 AGTGATTACATACGGAGCAAAATGAG 59.741 38.462 0.00 0.00 0.00 2.90
2152 6433 6.037172 GTGATTACATACGGAGCAAAATGAGT 59.963 38.462 0.00 0.00 0.00 3.41
2153 6434 5.794687 TTACATACGGAGCAAAATGAGTG 57.205 39.130 0.00 0.00 0.00 3.51
2154 6435 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
2155 6436 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
2156 6437 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
2157 6438 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
2158 6439 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
2159 6440 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
2160 6441 5.431765 ACGGAGCAAAATGAGTGAATCTAT 58.568 37.500 0.00 0.00 0.00 1.98
2161 6442 6.582636 ACGGAGCAAAATGAGTGAATCTATA 58.417 36.000 0.00 0.00 0.00 1.31
2162 6443 6.480320 ACGGAGCAAAATGAGTGAATCTATAC 59.520 38.462 0.00 0.00 0.00 1.47
2163 6444 6.703607 CGGAGCAAAATGAGTGAATCTATACT 59.296 38.462 0.00 0.00 0.00 2.12
2164 6445 7.095857 CGGAGCAAAATGAGTGAATCTATACTC 60.096 40.741 0.00 0.00 42.77 2.59
2165 6446 7.930865 GGAGCAAAATGAGTGAATCTATACTCT 59.069 37.037 0.00 0.00 42.86 3.24
2166 6447 9.973450 GAGCAAAATGAGTGAATCTATACTCTA 57.027 33.333 0.00 0.00 42.86 2.43
2197 6478 8.173542 TGTCTACATACATCCGTATATTGTGT 57.826 34.615 0.00 0.00 36.11 3.72
2198 6479 8.294577 TGTCTACATACATCCGTATATTGTGTC 58.705 37.037 0.00 0.00 36.11 3.67
2199 6480 7.754027 GTCTACATACATCCGTATATTGTGTCC 59.246 40.741 0.00 0.00 36.11 4.02
2200 6481 6.413783 ACATACATCCGTATATTGTGTCCA 57.586 37.500 0.00 0.00 36.11 4.02
2201 6482 7.004555 ACATACATCCGTATATTGTGTCCAT 57.995 36.000 0.00 0.00 36.11 3.41
2202 6483 7.450074 ACATACATCCGTATATTGTGTCCATT 58.550 34.615 0.00 0.00 36.11 3.16
2203 6484 7.936847 ACATACATCCGTATATTGTGTCCATTT 59.063 33.333 0.00 0.00 36.11 2.32
2204 6485 6.618287 ACATCCGTATATTGTGTCCATTTG 57.382 37.500 0.00 0.00 0.00 2.32
2205 6486 6.353323 ACATCCGTATATTGTGTCCATTTGA 58.647 36.000 0.00 0.00 0.00 2.69
2206 6487 6.826231 ACATCCGTATATTGTGTCCATTTGAA 59.174 34.615 0.00 0.00 0.00 2.69
2207 6488 7.338196 ACATCCGTATATTGTGTCCATTTGAAA 59.662 33.333 0.00 0.00 0.00 2.69
2208 6489 7.873719 TCCGTATATTGTGTCCATTTGAAAT 57.126 32.000 0.00 0.00 0.00 2.17
2209 6490 7.702386 TCCGTATATTGTGTCCATTTGAAATG 58.298 34.615 10.84 10.84 0.00 2.32
2210 6491 6.417635 CCGTATATTGTGTCCATTTGAAATGC 59.582 38.462 12.26 0.87 0.00 3.56
2211 6492 6.417635 CGTATATTGTGTCCATTTGAAATGCC 59.582 38.462 12.26 5.75 0.00 4.40
2212 6493 4.895668 ATTGTGTCCATTTGAAATGCCT 57.104 36.364 12.26 0.00 0.00 4.75
2213 6494 5.999205 ATTGTGTCCATTTGAAATGCCTA 57.001 34.783 12.26 0.00 0.00 3.93
2214 6495 5.389859 TTGTGTCCATTTGAAATGCCTAG 57.610 39.130 12.26 0.00 0.00 3.02
2215 6496 4.661222 TGTGTCCATTTGAAATGCCTAGA 58.339 39.130 12.26 1.83 0.00 2.43
2216 6497 5.076182 TGTGTCCATTTGAAATGCCTAGAA 58.924 37.500 12.26 0.00 0.00 2.10
2217 6498 5.538053 TGTGTCCATTTGAAATGCCTAGAAA 59.462 36.000 12.26 0.00 0.00 2.52
2218 6499 6.095377 GTGTCCATTTGAAATGCCTAGAAAG 58.905 40.000 12.26 0.00 0.00 2.62
2219 6500 6.009589 TGTCCATTTGAAATGCCTAGAAAGA 58.990 36.000 12.26 0.00 0.00 2.52
2220 6501 6.071952 TGTCCATTTGAAATGCCTAGAAAGAC 60.072 38.462 12.26 11.27 0.00 3.01
2221 6502 6.009589 TCCATTTGAAATGCCTAGAAAGACA 58.990 36.000 12.26 0.00 0.00 3.41
2222 6503 6.493115 TCCATTTGAAATGCCTAGAAAGACAA 59.507 34.615 12.26 0.00 0.00 3.18
2223 6504 7.015098 TCCATTTGAAATGCCTAGAAAGACAAA 59.985 33.333 12.26 0.00 0.00 2.83
2224 6505 7.820872 CCATTTGAAATGCCTAGAAAGACAAAT 59.179 33.333 12.26 0.00 36.38 2.32
2225 6506 9.859427 CATTTGAAATGCCTAGAAAGACAAATA 57.141 29.630 4.82 0.00 34.96 1.40
2231 6512 9.657419 AAATGCCTAGAAAGACAAATATTTTGG 57.343 29.630 0.00 0.00 0.00 3.28
2232 6513 8.593945 ATGCCTAGAAAGACAAATATTTTGGA 57.406 30.769 0.00 0.00 0.00 3.53
2233 6514 8.415950 TGCCTAGAAAGACAAATATTTTGGAA 57.584 30.769 0.00 0.00 0.00 3.53
2234 6515 9.034800 TGCCTAGAAAGACAAATATTTTGGAAT 57.965 29.630 0.00 0.00 0.00 3.01
2235 6516 9.305925 GCCTAGAAAGACAAATATTTTGGAATG 57.694 33.333 0.00 0.00 0.00 2.67
2236 6517 9.807649 CCTAGAAAGACAAATATTTTGGAATGG 57.192 33.333 0.00 0.00 0.00 3.16
2239 6520 8.534496 AGAAAGACAAATATTTTGGAATGGAGG 58.466 33.333 0.00 0.00 0.00 4.30
2240 6521 6.796785 AGACAAATATTTTGGAATGGAGGG 57.203 37.500 0.00 0.00 0.00 4.30
2241 6522 6.502138 AGACAAATATTTTGGAATGGAGGGA 58.498 36.000 0.00 0.00 0.00 4.20
2242 6523 6.608808 AGACAAATATTTTGGAATGGAGGGAG 59.391 38.462 0.00 0.00 0.00 4.30
2303 6584 9.787435 TTCTTTAAAACTAGAAACTATGGCTCA 57.213 29.630 0.00 0.00 0.00 4.26
2319 6600 1.541147 GCTCACCACAATTTGCTAGCA 59.459 47.619 14.93 14.93 0.00 3.49
2346 6627 3.063452 GCTCGCATTCGGTCTTAAATTCA 59.937 43.478 0.00 0.00 36.13 2.57
2431 6713 6.169800 TGAATAACGGAACACATGAATCTGA 58.830 36.000 0.00 0.00 0.00 3.27
2475 6757 7.858382 CGTCCAAAAGATTACACATTTACAACA 59.142 33.333 0.00 0.00 0.00 3.33
2646 6928 0.322975 AGTGAGACATCTGCCACCAC 59.677 55.000 0.00 0.00 0.00 4.16
2650 6932 2.028112 TGAGACATCTGCCACCACTTAC 60.028 50.000 0.00 0.00 0.00 2.34
3324 7607 4.825422 TCTGGAATCTGCTTTGACAGTAG 58.175 43.478 0.00 0.00 38.84 2.57
3538 7821 6.809689 TCAGTAAATTGAAGAATGCAGCATTG 59.190 34.615 25.66 6.93 33.90 2.82
3639 7922 9.582431 TCGATACTCCTGTTTCACTTTTAATAG 57.418 33.333 0.00 0.00 0.00 1.73
3835 8120 4.586235 AGGGCTTTGCACCACGCT 62.586 61.111 0.00 0.00 43.06 5.07
4041 8326 2.396157 GCAACGGTTCGACCCCATC 61.396 63.158 0.00 0.00 33.75 3.51
4220 10253 7.658525 TTCTATGTGATAATTTGGCCACAAT 57.341 32.000 3.88 6.10 41.97 2.71
4447 10480 5.810587 TCCTTTATGTTATGTCGCTTGAGAC 59.189 40.000 0.00 0.00 41.30 3.36
4450 10483 7.491372 CCTTTATGTTATGTCGCTTGAGACTTA 59.509 37.037 6.12 1.92 41.47 2.24
4501 10535 8.414003 TGTCGCTTGAGACTTATTGAACTATAT 58.586 33.333 6.12 0.00 41.47 0.86
4609 10643 7.016153 TCCCTTTATGTTATGTCACTTGACT 57.984 36.000 10.63 0.00 44.99 3.41
4779 10813 5.477291 AGTGAAGAGTCCGAAACTGATTCTA 59.523 40.000 0.00 0.00 38.74 2.10
4921 10956 6.630444 ACAATTGCATAAATTTTGTGCCAA 57.370 29.167 22.88 17.71 45.80 4.52
4983 11019 3.002791 TGTGAGAATTGACAAGATCCGC 58.997 45.455 0.00 0.00 0.00 5.54
5050 11087 8.592529 TTGATCCATCTTCAACATTGGATAAA 57.407 30.769 3.42 0.42 46.41 1.40
5056 11093 8.184192 CCATCTTCAACATTGGATAAAGTACAC 58.816 37.037 0.00 0.00 0.00 2.90
5071 11108 4.338379 AGTACACTTGGTCTGGTTCTTC 57.662 45.455 0.00 0.00 0.00 2.87
5073 11110 1.202651 ACACTTGGTCTGGTTCTTCCG 60.203 52.381 0.00 0.00 39.52 4.30
5102 11140 9.283768 TCTTTCACTAACATATTTGCTTGAGAA 57.716 29.630 0.00 0.00 0.00 2.87
5161 11199 3.080319 GACAAGCAAGAAGAAGAGCCAT 58.920 45.455 0.00 0.00 0.00 4.40
5604 11674 1.415374 GCGACGCTCTACAACAAGAA 58.585 50.000 13.73 0.00 0.00 2.52
5954 12028 0.673644 AGCAACGACCCCGAAGATTG 60.674 55.000 0.00 0.00 39.50 2.67
5983 12057 1.523758 GGCATTGAAGGACGACAAGT 58.476 50.000 0.00 0.00 0.00 3.16
6009 12083 7.624360 ATTTCGCCTTCACAATTATGACTAA 57.376 32.000 0.00 0.00 0.00 2.24
6010 12084 6.662414 TTCGCCTTCACAATTATGACTAAG 57.338 37.500 0.00 0.00 0.00 2.18
6064 12139 7.554118 TGAGTTCCAAGATTATGTCCTCATTTC 59.446 37.037 0.00 0.00 35.70 2.17
6140 12218 6.461110 ACATGGAATCAAATGAAGGTCATC 57.539 37.500 0.00 0.00 35.76 2.92
6321 12406 3.855255 TCTTGAATGGACTCAACCACA 57.145 42.857 0.00 0.00 43.03 4.17
6350 12435 3.009033 AGAAGATCACCGATTTCCAACCA 59.991 43.478 0.00 0.00 0.00 3.67
6523 12608 0.738389 CCAAGCAACGGTGACAAGTT 59.262 50.000 3.55 0.00 0.00 2.66
6586 12671 5.174037 ACTACAAGCAACTATAAGCCCAA 57.826 39.130 0.00 0.00 0.00 4.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 3.452123 AGCTAGGGTAGGGGCTGA 58.548 61.111 0.00 0.00 33.50 4.26
32 33 3.335579 ACGATGAGAAAACCTTAGTGGC 58.664 45.455 0.00 0.00 40.22 5.01
56 57 4.804420 AGGAGGGGCATCGAGGCA 62.804 66.667 24.79 0.00 46.44 4.75
65 66 0.758123 CAGATGAGAGAAGGAGGGGC 59.242 60.000 0.00 0.00 0.00 5.80
66 67 1.422531 CCAGATGAGAGAAGGAGGGG 58.577 60.000 0.00 0.00 0.00 4.79
78 80 1.837439 ACCAATAAGGACGCCAGATGA 59.163 47.619 0.00 0.00 41.22 2.92
93 95 2.505819 CCCCACTAGACTAGCAACCAAT 59.494 50.000 9.52 0.00 0.00 3.16
98 100 2.615986 TGTCCCCACTAGACTAGCAA 57.384 50.000 9.52 0.00 35.21 3.91
116 118 3.967332 AAGACAAATGAAAGGGGCATG 57.033 42.857 0.00 0.00 0.00 4.06
117 119 4.677182 ACTAAGACAAATGAAAGGGGCAT 58.323 39.130 0.00 0.00 0.00 4.40
120 122 7.168905 ACTAGAACTAAGACAAATGAAAGGGG 58.831 38.462 0.00 0.00 0.00 4.79
126 128 8.645814 TGACCTACTAGAACTAAGACAAATGA 57.354 34.615 0.00 0.00 0.00 2.57
128 130 9.877178 CAATGACCTACTAGAACTAAGACAAAT 57.123 33.333 0.00 0.00 0.00 2.32
158 160 6.110707 CCGCTAGTAAATCAAAACCTAAGGA 58.889 40.000 0.00 0.00 0.00 3.36
171 173 3.579709 CTCATCGATGCCGCTAGTAAAT 58.420 45.455 20.81 0.00 35.37 1.40
176 178 0.665670 CACCTCATCGATGCCGCTAG 60.666 60.000 20.81 11.85 35.37 3.42
200 202 8.500753 ACCTTATTCTAATGCGTCATTGTTTA 57.499 30.769 13.17 0.00 35.54 2.01
210 212 5.918011 GTCAGAGAGACCTTATTCTAATGCG 59.082 44.000 0.00 0.00 41.56 4.73
247 249 7.492352 AACCTTCATGGCTTATACGTTATTC 57.508 36.000 0.00 0.00 40.22 1.75
250 252 7.959175 AGATAACCTTCATGGCTTATACGTTA 58.041 34.615 0.00 0.00 40.22 3.18
262 264 8.469309 ACCAATATCCAAAGATAACCTTCATG 57.531 34.615 0.00 0.00 38.47 3.07
264 266 8.778059 ACTACCAATATCCAAAGATAACCTTCA 58.222 33.333 0.00 0.00 38.47 3.02
311 313 7.554835 ACTGTTGTACCAAAAGACAATCAACTA 59.445 33.333 1.27 0.00 37.84 2.24
394 399 0.907704 ATTCACTCCCCCGTGTAGCA 60.908 55.000 0.00 0.00 36.33 3.49
399 404 0.893270 TTGCAATTCACTCCCCCGTG 60.893 55.000 0.00 0.00 36.25 4.94
401 406 0.965439 TTTTGCAATTCACTCCCCCG 59.035 50.000 0.00 0.00 0.00 5.73
519 524 5.720371 TCAAATGAACCAAATCCGTCAAT 57.280 34.783 0.00 0.00 0.00 2.57
914 949 2.203788 AGGTCGGAGCTGGAACCA 60.204 61.111 9.23 0.00 0.00 3.67
917 952 1.682684 GAGGAGGTCGGAGCTGGAA 60.683 63.158 15.38 0.00 0.00 3.53
1070 1407 2.096406 CGTCGTGCTTGAATGCCG 59.904 61.111 0.00 0.00 0.00 5.69
1242 3301 0.179045 CACCCTTTGCTATCTCCCCG 60.179 60.000 0.00 0.00 0.00 5.73
1410 4045 6.698329 TGACGGTGGATTTATACAGATTTACG 59.302 38.462 0.00 0.00 0.00 3.18
1483 4123 5.337578 TTGATGACGATTATGACAGGTCA 57.662 39.130 4.37 4.37 44.59 4.02
1594 4236 2.311463 TCCCGGAGTGAATTGCAAAAA 58.689 42.857 0.73 0.00 0.00 1.94
1595 4237 1.988293 TCCCGGAGTGAATTGCAAAA 58.012 45.000 0.73 0.00 0.00 2.44
1596 4238 1.818060 CATCCCGGAGTGAATTGCAAA 59.182 47.619 0.73 0.00 0.00 3.68
1597 4239 1.004161 TCATCCCGGAGTGAATTGCAA 59.996 47.619 0.73 0.00 0.00 4.08
1598 4240 0.617935 TCATCCCGGAGTGAATTGCA 59.382 50.000 0.73 0.00 0.00 4.08
1599 4241 1.605710 CATCATCCCGGAGTGAATTGC 59.394 52.381 0.73 0.00 0.00 3.56
1600 4242 1.605710 GCATCATCCCGGAGTGAATTG 59.394 52.381 0.73 4.22 0.00 2.32
1601 4243 1.477558 GGCATCATCCCGGAGTGAATT 60.478 52.381 0.73 0.00 0.00 2.17
1602 4244 0.109342 GGCATCATCCCGGAGTGAAT 59.891 55.000 0.73 0.00 0.00 2.57
1603 4245 1.526887 GGCATCATCCCGGAGTGAA 59.473 57.895 0.73 0.00 0.00 3.18
1604 4246 2.443394 GGGCATCATCCCGGAGTGA 61.443 63.158 0.73 7.18 36.38 3.41
1605 4247 2.111878 GGGCATCATCCCGGAGTG 59.888 66.667 0.73 0.33 36.38 3.51
1614 4256 5.518865 AGTAATGTTAGTTTGGGGCATCAT 58.481 37.500 0.00 0.00 0.00 2.45
1701 4365 8.616076 ACAAAAATCATATTGATCGTCTTCTCC 58.384 33.333 0.00 0.00 35.76 3.71
1744 4408 2.616842 CAAGAAGGCGTAAACAACCAGT 59.383 45.455 0.00 0.00 0.00 4.00
1756 4420 4.228912 ACAATGAAAAGACAAGAAGGCG 57.771 40.909 0.00 0.00 0.00 5.52
1804 4468 7.968405 GGTGACCAGTTAAACATGAATTACATC 59.032 37.037 0.00 0.00 37.07 3.06
1805 4469 7.669722 AGGTGACCAGTTAAACATGAATTACAT 59.330 33.333 3.63 0.00 40.17 2.29
1806 4470 7.001674 AGGTGACCAGTTAAACATGAATTACA 58.998 34.615 3.63 0.00 0.00 2.41
1807 4471 7.174253 TCAGGTGACCAGTTAAACATGAATTAC 59.826 37.037 3.63 0.00 31.13 1.89
1808 4472 7.227873 TCAGGTGACCAGTTAAACATGAATTA 58.772 34.615 3.63 0.00 31.13 1.40
1809 4473 6.068010 TCAGGTGACCAGTTAAACATGAATT 58.932 36.000 3.63 0.00 31.13 2.17
1813 6094 4.452455 GTCTCAGGTGACCAGTTAAACATG 59.548 45.833 3.63 0.00 0.00 3.21
1824 6105 2.633481 AGGTTACAAGTCTCAGGTGACC 59.367 50.000 0.00 0.00 40.40 4.02
1829 6110 5.237344 CAGTTGAAAGGTTACAAGTCTCAGG 59.763 44.000 0.00 0.00 0.00 3.86
1863 6144 8.963130 GTATCTGATGACTCTGAACGAAAATAG 58.037 37.037 0.00 0.00 33.66 1.73
1871 6152 4.892934 AGAGGGTATCTGATGACTCTGAAC 59.107 45.833 15.23 0.00 36.69 3.18
1885 6166 8.926710 CGTATATTTGTGAATGAAGAGGGTATC 58.073 37.037 0.00 0.00 0.00 2.24
1890 6171 8.664798 TCAAACGTATATTTGTGAATGAAGAGG 58.335 33.333 0.00 0.00 39.97 3.69
1908 6189 7.516198 AGAAAAGAGTAGTAGGTCAAACGTA 57.484 36.000 0.00 0.00 0.00 3.57
1944 6225 8.915057 ATATTTGTGATTGAAGGGAGTATCTG 57.085 34.615 0.00 0.00 33.73 2.90
1949 6230 8.906867 CATTGTATATTTGTGATTGAAGGGAGT 58.093 33.333 0.00 0.00 0.00 3.85
1950 6231 8.906867 ACATTGTATATTTGTGATTGAAGGGAG 58.093 33.333 0.00 0.00 0.00 4.30
1951 6232 8.821686 ACATTGTATATTTGTGATTGAAGGGA 57.178 30.769 0.00 0.00 0.00 4.20
1997 6278 9.958285 CGCACTGAAATGTGTATATATACATTC 57.042 33.333 27.86 22.49 43.96 2.67
1998 6279 9.489084 ACGCACTGAAATGTGTATATATACATT 57.511 29.630 24.35 24.35 45.77 2.71
1999 6280 9.140286 GACGCACTGAAATGTGTATATATACAT 57.860 33.333 24.67 16.85 43.26 2.29
2000 6281 8.357402 AGACGCACTGAAATGTGTATATATACA 58.643 33.333 19.51 19.51 43.26 2.29
2001 6282 8.744008 AGACGCACTGAAATGTGTATATATAC 57.256 34.615 14.86 14.86 43.26 1.47
2003 6284 9.929180 AATAGACGCACTGAAATGTGTATATAT 57.071 29.630 6.94 0.00 43.28 0.86
2004 6285 9.758651 AAATAGACGCACTGAAATGTGTATATA 57.241 29.630 6.94 0.00 43.28 0.86
2005 6286 8.662781 AAATAGACGCACTGAAATGTGTATAT 57.337 30.769 1.79 1.79 44.98 0.86
2006 6287 9.027129 GTAAATAGACGCACTGAAATGTGTATA 57.973 33.333 0.00 0.00 43.26 1.47
2007 6288 6.985188 AAATAGACGCACTGAAATGTGTAT 57.015 33.333 0.00 0.00 43.26 2.29
2008 6289 7.094631 AGTAAATAGACGCACTGAAATGTGTA 58.905 34.615 0.00 0.00 43.26 2.90
2009 6290 5.932303 AGTAAATAGACGCACTGAAATGTGT 59.068 36.000 0.00 0.00 45.84 3.72
2010 6291 6.090763 TGAGTAAATAGACGCACTGAAATGTG 59.909 38.462 0.00 0.00 40.62 3.21
2011 6292 6.163476 TGAGTAAATAGACGCACTGAAATGT 58.837 36.000 0.00 0.00 0.00 2.71
2012 6293 6.647212 TGAGTAAATAGACGCACTGAAATG 57.353 37.500 0.00 0.00 0.00 2.32
2013 6294 7.849804 AATGAGTAAATAGACGCACTGAAAT 57.150 32.000 0.00 0.00 31.65 2.17
2014 6295 7.386573 TGAAATGAGTAAATAGACGCACTGAAA 59.613 33.333 0.00 0.00 31.65 2.69
2015 6296 6.871492 TGAAATGAGTAAATAGACGCACTGAA 59.129 34.615 0.00 0.00 31.65 3.02
2016 6297 6.394809 TGAAATGAGTAAATAGACGCACTGA 58.605 36.000 0.00 0.00 31.65 3.41
2017 6298 6.311445 ACTGAAATGAGTAAATAGACGCACTG 59.689 38.462 0.00 0.00 31.65 3.66
2018 6299 6.398918 ACTGAAATGAGTAAATAGACGCACT 58.601 36.000 0.00 0.00 31.65 4.40
2019 6300 6.310467 TGACTGAAATGAGTAAATAGACGCAC 59.690 38.462 0.00 0.00 31.65 5.34
2020 6301 6.394809 TGACTGAAATGAGTAAATAGACGCA 58.605 36.000 0.00 0.00 33.48 5.24
2021 6302 6.887376 TGACTGAAATGAGTAAATAGACGC 57.113 37.500 0.00 0.00 0.00 5.19
2065 6346 9.021807 CGGAGGGAGTATAAGATGTTTTAGATA 57.978 37.037 0.00 0.00 0.00 1.98
2066 6347 7.509659 ACGGAGGGAGTATAAGATGTTTTAGAT 59.490 37.037 0.00 0.00 0.00 1.98
2067 6348 6.837568 ACGGAGGGAGTATAAGATGTTTTAGA 59.162 38.462 0.00 0.00 0.00 2.10
2068 6349 7.052142 ACGGAGGGAGTATAAGATGTTTTAG 57.948 40.000 0.00 0.00 0.00 1.85
2069 6350 7.418254 GGAACGGAGGGAGTATAAGATGTTTTA 60.418 40.741 0.00 0.00 0.00 1.52
2070 6351 5.952347 ACGGAGGGAGTATAAGATGTTTT 57.048 39.130 0.00 0.00 0.00 2.43
2071 6352 5.163332 GGAACGGAGGGAGTATAAGATGTTT 60.163 44.000 0.00 0.00 0.00 2.83
2072 6353 4.344390 GGAACGGAGGGAGTATAAGATGTT 59.656 45.833 0.00 0.00 0.00 2.71
2073 6354 3.896272 GGAACGGAGGGAGTATAAGATGT 59.104 47.826 0.00 0.00 0.00 3.06
2074 6355 4.153411 AGGAACGGAGGGAGTATAAGATG 58.847 47.826 0.00 0.00 0.00 2.90
2075 6356 4.472690 AGGAACGGAGGGAGTATAAGAT 57.527 45.455 0.00 0.00 0.00 2.40
2076 6357 3.967467 AGGAACGGAGGGAGTATAAGA 57.033 47.619 0.00 0.00 0.00 2.10
2077 6358 5.361857 TGTTTAGGAACGGAGGGAGTATAAG 59.638 44.000 0.00 0.00 38.65 1.73
2078 6359 5.271598 TGTTTAGGAACGGAGGGAGTATAA 58.728 41.667 0.00 0.00 38.65 0.98
2079 6360 4.870636 TGTTTAGGAACGGAGGGAGTATA 58.129 43.478 0.00 0.00 38.65 1.47
2080 6361 3.716431 TGTTTAGGAACGGAGGGAGTAT 58.284 45.455 0.00 0.00 38.65 2.12
2081 6362 3.173953 TGTTTAGGAACGGAGGGAGTA 57.826 47.619 0.00 0.00 38.65 2.59
2082 6363 2.019807 TGTTTAGGAACGGAGGGAGT 57.980 50.000 0.00 0.00 38.65 3.85
2083 6364 3.629142 AATGTTTAGGAACGGAGGGAG 57.371 47.619 0.00 0.00 38.65 4.30
2084 6365 3.073356 ACAAATGTTTAGGAACGGAGGGA 59.927 43.478 0.00 0.00 38.65 4.20
2085 6366 3.418047 ACAAATGTTTAGGAACGGAGGG 58.582 45.455 0.00 0.00 38.65 4.30
2086 6367 4.324267 AGACAAATGTTTAGGAACGGAGG 58.676 43.478 0.00 0.00 38.65 4.30
2087 6368 5.941948 AAGACAAATGTTTAGGAACGGAG 57.058 39.130 0.00 0.00 38.65 4.63
2088 6369 6.059484 AGAAAGACAAATGTTTAGGAACGGA 58.941 36.000 0.00 0.00 38.65 4.69
2089 6370 6.313744 AGAAAGACAAATGTTTAGGAACGG 57.686 37.500 0.00 0.00 38.65 4.44
2090 6371 8.306680 TCTAGAAAGACAAATGTTTAGGAACG 57.693 34.615 0.00 0.00 38.65 3.95
2091 6372 9.490379 TCTCTAGAAAGACAAATGTTTAGGAAC 57.510 33.333 0.00 0.00 36.29 3.62
2099 6380 9.342308 TGTTGAAATCTCTAGAAAGACAAATGT 57.658 29.630 0.00 0.00 0.00 2.71
2102 6383 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
2103 6384 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
2104 6385 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
2105 6386 8.594881 TCACTTGTTGAAATCTCTAGAAAGAC 57.405 34.615 0.00 0.00 0.00 3.01
2106 6387 9.784531 AATCACTTGTTGAAATCTCTAGAAAGA 57.215 29.630 0.00 0.00 37.92 2.52
2109 6390 9.996554 TGTAATCACTTGTTGAAATCTCTAGAA 57.003 29.630 0.00 0.00 37.92 2.10
2113 6394 8.873830 CGTATGTAATCACTTGTTGAAATCTCT 58.126 33.333 0.00 0.00 37.92 3.10
2114 6395 8.116753 CCGTATGTAATCACTTGTTGAAATCTC 58.883 37.037 0.00 0.00 37.92 2.75
2115 6396 7.822334 TCCGTATGTAATCACTTGTTGAAATCT 59.178 33.333 0.00 0.00 37.92 2.40
2116 6397 7.970384 TCCGTATGTAATCACTTGTTGAAATC 58.030 34.615 0.00 0.00 37.92 2.17
2117 6398 7.414098 GCTCCGTATGTAATCACTTGTTGAAAT 60.414 37.037 0.00 0.00 37.92 2.17
2118 6399 6.128391 GCTCCGTATGTAATCACTTGTTGAAA 60.128 38.462 0.00 0.00 37.92 2.69
2119 6400 5.350365 GCTCCGTATGTAATCACTTGTTGAA 59.650 40.000 0.00 0.00 37.92 2.69
2120 6401 4.868171 GCTCCGTATGTAATCACTTGTTGA 59.132 41.667 0.00 0.00 39.11 3.18
2121 6402 4.629634 TGCTCCGTATGTAATCACTTGTTG 59.370 41.667 0.00 0.00 0.00 3.33
2122 6403 4.827692 TGCTCCGTATGTAATCACTTGTT 58.172 39.130 0.00 0.00 0.00 2.83
2123 6404 4.465632 TGCTCCGTATGTAATCACTTGT 57.534 40.909 0.00 0.00 0.00 3.16
2124 6405 5.794687 TTTGCTCCGTATGTAATCACTTG 57.205 39.130 0.00 0.00 0.00 3.16
2125 6406 6.597672 TCATTTTGCTCCGTATGTAATCACTT 59.402 34.615 0.00 0.00 0.00 3.16
2126 6407 6.112734 TCATTTTGCTCCGTATGTAATCACT 58.887 36.000 0.00 0.00 0.00 3.41
2127 6408 6.037172 ACTCATTTTGCTCCGTATGTAATCAC 59.963 38.462 0.00 0.00 0.00 3.06
2128 6409 6.037062 CACTCATTTTGCTCCGTATGTAATCA 59.963 38.462 0.00 0.00 0.00 2.57
2129 6410 6.257849 TCACTCATTTTGCTCCGTATGTAATC 59.742 38.462 0.00 0.00 0.00 1.75
2130 6411 6.112734 TCACTCATTTTGCTCCGTATGTAAT 58.887 36.000 0.00 0.00 0.00 1.89
2131 6412 5.483811 TCACTCATTTTGCTCCGTATGTAA 58.516 37.500 0.00 0.00 0.00 2.41
2132 6413 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
2133 6414 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
2134 6415 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
2135 6416 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
2136 6417 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
2137 6418 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
2138 6419 5.998454 ATAGATTCACTCATTTTGCTCCG 57.002 39.130 0.00 0.00 0.00 4.63
2139 6420 7.930865 AGAGTATAGATTCACTCATTTTGCTCC 59.069 37.037 4.70 0.00 42.99 4.70
2140 6421 8.885494 AGAGTATAGATTCACTCATTTTGCTC 57.115 34.615 4.70 0.00 42.99 4.26
2171 6452 8.803235 ACACAATATACGGATGTATGTAGACAT 58.197 33.333 0.08 0.08 41.37 3.06
2172 6453 8.173542 ACACAATATACGGATGTATGTAGACA 57.826 34.615 0.00 0.00 41.37 3.41
2173 6454 7.754027 GGACACAATATACGGATGTATGTAGAC 59.246 40.741 0.00 0.00 41.37 2.59
2174 6455 7.449086 TGGACACAATATACGGATGTATGTAGA 59.551 37.037 0.00 0.00 41.37 2.59
2175 6456 7.599171 TGGACACAATATACGGATGTATGTAG 58.401 38.462 0.00 0.00 41.37 2.74
2176 6457 7.527568 TGGACACAATATACGGATGTATGTA 57.472 36.000 0.00 0.00 41.37 2.29
2177 6458 6.413783 TGGACACAATATACGGATGTATGT 57.586 37.500 0.00 0.00 41.37 2.29
2178 6459 7.905604 AATGGACACAATATACGGATGTATG 57.094 36.000 0.00 0.00 41.37 2.39
2179 6460 8.154203 TCAAATGGACACAATATACGGATGTAT 58.846 33.333 0.00 0.00 43.62 2.29
2180 6461 7.501844 TCAAATGGACACAATATACGGATGTA 58.498 34.615 0.00 0.00 34.45 2.29
2181 6462 6.353323 TCAAATGGACACAATATACGGATGT 58.647 36.000 0.00 0.00 0.00 3.06
2182 6463 6.859420 TCAAATGGACACAATATACGGATG 57.141 37.500 0.00 0.00 0.00 3.51
2183 6464 7.873719 TTTCAAATGGACACAATATACGGAT 57.126 32.000 0.00 0.00 0.00 4.18
2184 6465 7.680827 GCATTTCAAATGGACACAATATACGGA 60.681 37.037 12.14 0.00 0.00 4.69
2185 6466 6.417635 GCATTTCAAATGGACACAATATACGG 59.582 38.462 12.14 0.00 0.00 4.02
2186 6467 6.417635 GGCATTTCAAATGGACACAATATACG 59.582 38.462 12.14 0.00 0.00 3.06
2187 6468 7.491682 AGGCATTTCAAATGGACACAATATAC 58.508 34.615 12.14 0.00 0.00 1.47
2188 6469 7.658525 AGGCATTTCAAATGGACACAATATA 57.341 32.000 12.14 0.00 0.00 0.86
2189 6470 6.549433 AGGCATTTCAAATGGACACAATAT 57.451 33.333 12.14 0.00 0.00 1.28
2190 6471 5.999205 AGGCATTTCAAATGGACACAATA 57.001 34.783 12.14 0.00 0.00 1.90
2191 6472 4.895668 AGGCATTTCAAATGGACACAAT 57.104 36.364 12.14 0.00 0.00 2.71
2192 6473 5.076182 TCTAGGCATTTCAAATGGACACAA 58.924 37.500 12.14 0.00 0.00 3.33
2193 6474 4.661222 TCTAGGCATTTCAAATGGACACA 58.339 39.130 12.14 0.00 0.00 3.72
2194 6475 5.643379 TTCTAGGCATTTCAAATGGACAC 57.357 39.130 12.14 0.00 0.00 3.67
2195 6476 6.009589 TCTTTCTAGGCATTTCAAATGGACA 58.990 36.000 12.14 0.00 0.00 4.02
2196 6477 6.071952 TGTCTTTCTAGGCATTTCAAATGGAC 60.072 38.462 12.14 8.23 29.10 4.02
2197 6478 6.009589 TGTCTTTCTAGGCATTTCAAATGGA 58.990 36.000 12.14 0.00 29.10 3.41
2198 6479 6.271488 TGTCTTTCTAGGCATTTCAAATGG 57.729 37.500 12.14 0.00 29.10 3.16
2199 6480 8.767478 ATTTGTCTTTCTAGGCATTTCAAATG 57.233 30.769 5.68 5.68 35.56 2.32
2205 6486 9.657419 CCAAAATATTTGTCTTTCTAGGCATTT 57.343 29.630 0.39 0.00 35.56 2.32
2206 6487 9.034800 TCCAAAATATTTGTCTTTCTAGGCATT 57.965 29.630 0.39 0.00 35.56 3.56
2207 6488 8.593945 TCCAAAATATTTGTCTTTCTAGGCAT 57.406 30.769 0.39 0.00 35.56 4.40
2208 6489 8.415950 TTCCAAAATATTTGTCTTTCTAGGCA 57.584 30.769 0.39 0.00 33.22 4.75
2209 6490 9.305925 CATTCCAAAATATTTGTCTTTCTAGGC 57.694 33.333 0.39 0.00 0.00 3.93
2210 6491 9.807649 CCATTCCAAAATATTTGTCTTTCTAGG 57.192 33.333 0.39 0.00 0.00 3.02
2213 6494 8.534496 CCTCCATTCCAAAATATTTGTCTTTCT 58.466 33.333 0.39 0.00 0.00 2.52
2214 6495 7.765819 CCCTCCATTCCAAAATATTTGTCTTTC 59.234 37.037 0.39 0.00 0.00 2.62
2215 6496 7.457535 TCCCTCCATTCCAAAATATTTGTCTTT 59.542 33.333 0.39 0.00 0.00 2.52
2216 6497 6.959366 TCCCTCCATTCCAAAATATTTGTCTT 59.041 34.615 0.39 0.00 0.00 3.01
2217 6498 6.502138 TCCCTCCATTCCAAAATATTTGTCT 58.498 36.000 0.39 0.00 0.00 3.41
2218 6499 6.381133 ACTCCCTCCATTCCAAAATATTTGTC 59.619 38.462 0.39 0.00 0.00 3.18
2219 6500 6.263754 ACTCCCTCCATTCCAAAATATTTGT 58.736 36.000 0.39 0.00 0.00 2.83
2220 6501 6.796785 ACTCCCTCCATTCCAAAATATTTG 57.203 37.500 0.39 0.00 0.00 2.32
2221 6502 9.506042 AAATACTCCCTCCATTCCAAAATATTT 57.494 29.630 0.00 0.00 0.00 1.40
2222 6503 8.927411 CAAATACTCCCTCCATTCCAAAATATT 58.073 33.333 0.00 0.00 0.00 1.28
2223 6504 8.067488 ACAAATACTCCCTCCATTCCAAAATAT 58.933 33.333 0.00 0.00 0.00 1.28
2224 6505 7.418378 ACAAATACTCCCTCCATTCCAAAATA 58.582 34.615 0.00 0.00 0.00 1.40
2225 6506 6.263754 ACAAATACTCCCTCCATTCCAAAAT 58.736 36.000 0.00 0.00 0.00 1.82
2226 6507 5.650283 ACAAATACTCCCTCCATTCCAAAA 58.350 37.500 0.00 0.00 0.00 2.44
2227 6508 5.269554 ACAAATACTCCCTCCATTCCAAA 57.730 39.130 0.00 0.00 0.00 3.28
2228 6509 4.946160 ACAAATACTCCCTCCATTCCAA 57.054 40.909 0.00 0.00 0.00 3.53
2229 6510 4.946160 AACAAATACTCCCTCCATTCCA 57.054 40.909 0.00 0.00 0.00 3.53
2230 6511 6.265422 CCATTAACAAATACTCCCTCCATTCC 59.735 42.308 0.00 0.00 0.00 3.01
2231 6512 7.060421 TCCATTAACAAATACTCCCTCCATTC 58.940 38.462 0.00 0.00 0.00 2.67
2232 6513 6.980577 TCCATTAACAAATACTCCCTCCATT 58.019 36.000 0.00 0.00 0.00 3.16
2233 6514 6.410853 CCTCCATTAACAAATACTCCCTCCAT 60.411 42.308 0.00 0.00 0.00 3.41
2234 6515 5.104109 CCTCCATTAACAAATACTCCCTCCA 60.104 44.000 0.00 0.00 0.00 3.86
2235 6516 5.377478 CCTCCATTAACAAATACTCCCTCC 58.623 45.833 0.00 0.00 0.00 4.30
2236 6517 5.132144 TCCCTCCATTAACAAATACTCCCTC 59.868 44.000 0.00 0.00 0.00 4.30
2237 6518 5.043762 TCCCTCCATTAACAAATACTCCCT 58.956 41.667 0.00 0.00 0.00 4.20
2238 6519 5.104067 ACTCCCTCCATTAACAAATACTCCC 60.104 44.000 0.00 0.00 0.00 4.30
2239 6520 6.002653 ACTCCCTCCATTAACAAATACTCC 57.997 41.667 0.00 0.00 0.00 3.85
2240 6521 6.990939 GGTACTCCCTCCATTAACAAATACTC 59.009 42.308 0.00 0.00 0.00 2.59
2241 6522 6.677076 AGGTACTCCCTCCATTAACAAATACT 59.323 38.462 0.00 0.00 40.71 2.12
2242 6523 6.896883 AGGTACTCCCTCCATTAACAAATAC 58.103 40.000 0.00 0.00 40.71 1.89
2303 6584 2.231964 CCATGTGCTAGCAAATTGTGGT 59.768 45.455 21.29 0.00 41.93 4.16
2319 6600 1.815421 GACCGAATGCGAGCCATGT 60.815 57.895 0.00 0.00 40.82 3.21
2328 6609 4.044426 GCCATGAATTTAAGACCGAATGC 58.956 43.478 0.00 0.00 0.00 3.56
2475 6757 3.679389 ACTGGAACGCTCATTCTTGATT 58.321 40.909 0.00 0.00 0.00 2.57
2607 6889 4.564769 CACTGTATCTTTCTCGGCTTTCTC 59.435 45.833 0.00 0.00 0.00 2.87
2646 6928 5.357878 TGGGCAAGATGATTTTAGCTGTAAG 59.642 40.000 0.00 0.00 0.00 2.34
2650 6932 4.724074 TTGGGCAAGATGATTTTAGCTG 57.276 40.909 0.00 0.00 0.00 4.24
2987 7270 9.353431 TCGAGGTACACTAATAATAATACCACA 57.647 33.333 0.00 0.00 35.53 4.17
3176 7459 3.084786 AGGTAGGACTTTCATTTGCAGC 58.915 45.455 0.00 0.00 0.00 5.25
3538 7821 3.376234 ACATCACATAGTGCACATTGAGC 59.624 43.478 21.04 0.00 32.98 4.26
3541 7824 4.154556 TCACACATCACATAGTGCACATTG 59.845 41.667 21.04 17.61 39.30 2.82
3639 7922 7.683437 AGGCTAAACTTTTGAATAGGTACAC 57.317 36.000 0.00 0.00 0.00 2.90
4041 8326 3.068165 TGACTCAGGAGGCATTGTATACG 59.932 47.826 0.00 0.00 42.59 3.06
4252 10285 3.642848 ACATGCCACAAGTTCTTCCATTT 59.357 39.130 0.00 0.00 0.00 2.32
4501 10535 8.160765 TCTCAAGTGACATAACATAAAGGGAAA 58.839 33.333 0.00 0.00 0.00 3.13
4609 10643 9.457436 GGTAAAGGGAAATATAGTTCAACAAGA 57.543 33.333 14.35 0.00 0.00 3.02
4646 10680 9.299963 CAAAATAACATTGTTCAACAAGTCTCA 57.700 29.630 9.27 0.00 41.94 3.27
4725 10759 4.681781 GCCACTTGTGCTCATCTACATAGT 60.682 45.833 0.00 0.00 0.00 2.12
4779 10813 4.583489 CTCCTTTGAGATTGCCATAGCATT 59.417 41.667 0.00 0.00 44.75 3.56
4921 10956 1.834263 GGAGTAGCTTGGTGAGGATGT 59.166 52.381 0.00 0.00 0.00 3.06
5050 11087 3.071167 GGAAGAACCAGACCAAGTGTACT 59.929 47.826 0.00 0.00 38.79 2.73
5056 11093 2.256117 AACGGAAGAACCAGACCAAG 57.744 50.000 0.00 0.00 38.90 3.61
5071 11108 7.305474 AGCAAATATGTTAGTGAAAGAAACGG 58.695 34.615 0.00 0.00 0.00 4.44
5073 11110 9.677567 TCAAGCAAATATGTTAGTGAAAGAAAC 57.322 29.630 0.00 0.00 0.00 2.78
5102 11140 4.561752 AGAAGTACTTGGCCTATCCATCT 58.438 43.478 14.14 0.00 46.04 2.90
5604 11674 1.136695 TGTTCCTTACGGTGTTGTCGT 59.863 47.619 0.00 0.00 43.64 4.34
5818 11889 3.244596 GGGTCTTGAACTACTTGCTCCTT 60.245 47.826 0.00 0.00 0.00 3.36
5983 12057 7.624360 AGTCATAATTGTGAAGGCGAAATAA 57.376 32.000 6.45 0.00 0.00 1.40
6064 12139 1.081892 CTCAATGACTTGCTCCCACG 58.918 55.000 0.00 0.00 32.11 4.94
6115 12190 7.614974 TGATGACCTTCATTTGATTCCATGTTA 59.385 33.333 0.00 0.00 37.20 2.41
6140 12218 1.565156 TAGGCACAAAACGCGCTCTG 61.565 55.000 5.73 2.70 0.00 3.35
6259 12344 2.499693 TCATCTTCCGTGACATTGGCTA 59.500 45.455 0.00 0.00 0.00 3.93
6321 12406 6.127054 TGGAAATCGGTGATCTTCTTGATAGT 60.127 38.462 0.00 0.00 35.14 2.12
6350 12435 3.393089 AGCTCGAGAAGATTTGTGTGT 57.607 42.857 18.75 0.00 0.00 3.72
6410 12495 5.290400 GGAATACTTGGCGTACTTGTAGTTC 59.710 44.000 0.00 0.00 0.00 3.01
6523 12608 5.204409 TGTCGAAGGTTTCTTGTAGCTTA 57.796 39.130 0.00 0.00 33.80 3.09
6586 12671 5.426689 TTGAGTAGGTGATGATGAAGCTT 57.573 39.130 0.00 0.00 0.00 3.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.