Multiple sequence alignment - TraesCS7A01G282300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G282300 chr7A 100.000 5861 0 0 1 5861 308450996 308456856 0.000000e+00 10824.0
1 TraesCS7A01G282300 chr7A 90.111 1355 104 15 4106 5434 221746411 221745061 0.000000e+00 1733.0
2 TraesCS7A01G282300 chr7A 87.065 719 55 14 5179 5861 629775758 629775042 0.000000e+00 778.0
3 TraesCS7A01G282300 chr2B 95.277 5928 197 23 1 5861 220357400 220363311 0.000000e+00 9319.0
4 TraesCS7A01G282300 chr2B 94.646 3754 160 24 241 3985 421425792 421422071 0.000000e+00 5781.0
5 TraesCS7A01G282300 chr2B 91.017 1180 61 20 4725 5861 421412783 421411606 0.000000e+00 1550.0
6 TraesCS7A01G282300 chr3D 95.505 5695 151 30 40 5667 256149471 256143815 0.000000e+00 9001.0
7 TraesCS7A01G282300 chr3D 97.561 41 1 0 1 41 256149769 256149729 2.930000e-08 71.3
8 TraesCS7A01G282300 chr1B 94.846 5762 180 42 171 5861 192694132 192688417 0.000000e+00 8887.0
9 TraesCS7A01G282300 chr1B 94.156 1369 60 7 3827 5178 538917256 538918621 0.000000e+00 2067.0
10 TraesCS7A01G282300 chr1B 93.997 1366 63 8 3827 5178 117569460 117570820 0.000000e+00 2050.0
11 TraesCS7A01G282300 chr1B 95.122 123 6 0 1 123 192694253 192694131 1.670000e-45 195.0
12 TraesCS7A01G282300 chr6A 96.950 4525 94 14 458 4952 388055615 388060125 0.000000e+00 7552.0
13 TraesCS7A01G282300 chr6A 97.386 459 12 0 1 459 388054995 388055453 0.000000e+00 782.0
14 TraesCS7A01G282300 chr4B 96.172 2612 74 13 353 2946 414457295 414454692 0.000000e+00 4246.0
15 TraesCS7A01G282300 chr4B 93.254 2861 118 22 3067 5861 414454041 414451190 0.000000e+00 4145.0
16 TraesCS7A01G282300 chr4B 89.123 1517 86 37 4389 5859 149030358 149028875 0.000000e+00 1814.0
17 TraesCS7A01G282300 chr4B 95.606 660 19 4 3027 3685 414454687 414454037 0.000000e+00 1050.0
18 TraesCS7A01G282300 chr5B 95.155 2580 83 15 1 2539 139739255 139741833 0.000000e+00 4034.0
19 TraesCS7A01G282300 chr6B 93.812 2521 100 23 3389 5861 393760617 393763129 0.000000e+00 3740.0
20 TraesCS7A01G282300 chr6B 96.639 1785 57 2 1163 2946 393757675 393759457 0.000000e+00 2961.0
21 TraesCS7A01G282300 chr6B 88.346 635 38 9 5258 5861 373759842 373759213 0.000000e+00 730.0
22 TraesCS7A01G282300 chr5D 97.175 1805 35 3 1564 3366 249158411 249156621 0.000000e+00 3037.0
23 TraesCS7A01G282300 chr5D 93.753 1809 65 11 4100 5861 249151353 249149546 0.000000e+00 2671.0
24 TraesCS7A01G282300 chr5D 96.092 1484 36 8 1 1467 249160202 249158724 0.000000e+00 2399.0
25 TraesCS7A01G282300 chr5D 87.647 170 13 5 73 241 105111094 105110932 2.160000e-44 191.0
26 TraesCS7A01G282300 chr3B 95.060 1741 70 10 2803 4535 277656413 277658145 0.000000e+00 2724.0
27 TraesCS7A01G282300 chr3B 94.804 1328 65 3 788 2114 277655095 277656419 0.000000e+00 2067.0
28 TraesCS7A01G282300 chr3B 91.337 1443 109 10 1879 3312 330779215 330777780 0.000000e+00 1958.0
29 TraesCS7A01G282300 chr3B 91.890 1381 66 9 4526 5861 277659002 277660381 0.000000e+00 1888.0
30 TraesCS7A01G282300 chr3B 93.804 807 32 5 1 792 277645097 277645900 0.000000e+00 1197.0
31 TraesCS7A01G282300 chr5A 93.638 1336 64 17 630 1952 343766020 343764693 0.000000e+00 1977.0
32 TraesCS7A01G282300 chr5A 88.824 170 15 4 73 241 109286017 109285851 7.700000e-49 206.0
33 TraesCS7A01G282300 chr5A 90.909 77 5 2 3762 3837 343763588 343763513 1.040000e-17 102.0
34 TraesCS7A01G282300 chr6D 89.667 900 52 18 4996 5861 16120352 16121244 0.000000e+00 1109.0
35 TraesCS7A01G282300 chr4D 89.011 182 17 3 61 241 253871487 253871308 7.640000e-54 222.0
36 TraesCS7A01G282300 chr4D 94.828 58 3 0 1 58 254209304 254209247 2.250000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G282300 chr7A 308450996 308456856 5860 False 10824.000000 10824 100.000000 1 5861 1 chr7A.!!$F1 5860
1 TraesCS7A01G282300 chr7A 221745061 221746411 1350 True 1733.000000 1733 90.111000 4106 5434 1 chr7A.!!$R1 1328
2 TraesCS7A01G282300 chr7A 629775042 629775758 716 True 778.000000 778 87.065000 5179 5861 1 chr7A.!!$R2 682
3 TraesCS7A01G282300 chr2B 220357400 220363311 5911 False 9319.000000 9319 95.277000 1 5861 1 chr2B.!!$F1 5860
4 TraesCS7A01G282300 chr2B 421422071 421425792 3721 True 5781.000000 5781 94.646000 241 3985 1 chr2B.!!$R2 3744
5 TraesCS7A01G282300 chr2B 421411606 421412783 1177 True 1550.000000 1550 91.017000 4725 5861 1 chr2B.!!$R1 1136
6 TraesCS7A01G282300 chr3D 256143815 256149769 5954 True 4536.150000 9001 96.533000 1 5667 2 chr3D.!!$R1 5666
7 TraesCS7A01G282300 chr1B 192688417 192694253 5836 True 4541.000000 8887 94.984000 1 5861 2 chr1B.!!$R1 5860
8 TraesCS7A01G282300 chr1B 538917256 538918621 1365 False 2067.000000 2067 94.156000 3827 5178 1 chr1B.!!$F2 1351
9 TraesCS7A01G282300 chr1B 117569460 117570820 1360 False 2050.000000 2050 93.997000 3827 5178 1 chr1B.!!$F1 1351
10 TraesCS7A01G282300 chr6A 388054995 388060125 5130 False 4167.000000 7552 97.168000 1 4952 2 chr6A.!!$F1 4951
11 TraesCS7A01G282300 chr4B 414451190 414457295 6105 True 3147.000000 4246 95.010667 353 5861 3 chr4B.!!$R2 5508
12 TraesCS7A01G282300 chr4B 149028875 149030358 1483 True 1814.000000 1814 89.123000 4389 5859 1 chr4B.!!$R1 1470
13 TraesCS7A01G282300 chr5B 139739255 139741833 2578 False 4034.000000 4034 95.155000 1 2539 1 chr5B.!!$F1 2538
14 TraesCS7A01G282300 chr6B 393757675 393763129 5454 False 3350.500000 3740 95.225500 1163 5861 2 chr6B.!!$F1 4698
15 TraesCS7A01G282300 chr6B 373759213 373759842 629 True 730.000000 730 88.346000 5258 5861 1 chr6B.!!$R1 603
16 TraesCS7A01G282300 chr5D 249156621 249160202 3581 True 2718.000000 3037 96.633500 1 3366 2 chr5D.!!$R3 3365
17 TraesCS7A01G282300 chr5D 249149546 249151353 1807 True 2671.000000 2671 93.753000 4100 5861 1 chr5D.!!$R2 1761
18 TraesCS7A01G282300 chr3B 277655095 277660381 5286 False 2226.333333 2724 93.918000 788 5861 3 chr3B.!!$F2 5073
19 TraesCS7A01G282300 chr3B 330777780 330779215 1435 True 1958.000000 1958 91.337000 1879 3312 1 chr3B.!!$R1 1433
20 TraesCS7A01G282300 chr3B 277645097 277645900 803 False 1197.000000 1197 93.804000 1 792 1 chr3B.!!$F1 791
21 TraesCS7A01G282300 chr5A 343763513 343766020 2507 True 1039.500000 1977 92.273500 630 3837 2 chr5A.!!$R2 3207
22 TraesCS7A01G282300 chr6D 16120352 16121244 892 False 1109.000000 1109 89.667000 4996 5861 1 chr6D.!!$F1 865

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
370 679 1.043022 CTTCTGCCCCCATATTTGGC 58.957 55.000 0.00 0.0 45.56 4.52 F
1048 1546 1.048601 AGCCAACGACAGGAAGAAGA 58.951 50.000 0.00 0.0 0.00 2.87 F
2059 2857 0.107703 CGGCAAGGTGAGCTTATCCA 60.108 55.000 12.96 0.0 0.00 3.41 F
2169 2967 4.816385 TCGGCATCCTGACAATTTATCTTC 59.184 41.667 0.00 0.0 0.00 2.87 F
2819 3627 4.873746 TCTCCACTTCAGACACTAAAGG 57.126 45.455 0.00 0.0 0.00 3.11 F
4001 6277 1.182667 TTGCTCTAAGCGTCAGCCTA 58.817 50.000 1.82 0.0 46.26 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1275 1775 1.208052 GTGCTCTAGGGACATCAAGCA 59.792 52.381 0.00 0.00 37.41 3.91 R
2846 3654 1.207791 AATCCGCAATCTGACTCCCT 58.792 50.000 0.00 0.00 0.00 4.20 R
3016 4588 2.344093 ACCACCTCAACCCATAGACT 57.656 50.000 0.00 0.00 0.00 3.24 R
3049 4621 3.222603 ACGCAGGAAAAAGAGGAACAAT 58.777 40.909 0.00 0.00 0.00 2.71 R
4295 6575 3.810386 TGCTGACAGTTATTTAACACGCA 59.190 39.130 3.99 0.00 38.62 5.24 R
5734 8993 1.086067 ATCACAACTCGGCGATGCAG 61.086 55.000 11.27 0.09 0.00 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
278 587 1.598130 GGCCCTCGGATGAATTCGG 60.598 63.158 0.04 0.00 0.00 4.30
357 666 2.937799 CTCTTGCTCATTCTCCTTCTGC 59.062 50.000 0.00 0.00 0.00 4.26
370 679 1.043022 CTTCTGCCCCCATATTTGGC 58.957 55.000 0.00 0.00 45.56 4.52
437 749 2.694628 ACATGTGTTGCATTGTCACCTT 59.305 40.909 0.00 0.00 35.19 3.50
906 1402 8.125448 GCTCTGAATATAAATTGTGACCTTGTC 58.875 37.037 0.00 0.00 0.00 3.18
969 1467 1.982660 ATGAGAAGGAGCATGCCATG 58.017 50.000 15.66 0.00 0.00 3.66
1048 1546 1.048601 AGCCAACGACAGGAAGAAGA 58.951 50.000 0.00 0.00 0.00 2.87
1275 1775 1.837439 TGAGTGGCCGGAGATATTGTT 59.163 47.619 5.05 0.00 0.00 2.83
1295 1795 1.208052 TGCTTGATGTCCCTAGAGCAC 59.792 52.381 0.00 0.00 35.43 4.40
1321 1821 2.122768 CCCTTCCAAGATAGGTGAGCT 58.877 52.381 0.00 0.00 0.00 4.09
1663 2429 4.020485 AGAGTGTTGCGTATTAGGAAACCT 60.020 41.667 5.08 0.00 37.71 3.50
1687 2475 5.995282 TCTTGGATAGTTAAGGTGTTGTGTG 59.005 40.000 0.00 0.00 0.00 3.82
2059 2857 0.107703 CGGCAAGGTGAGCTTATCCA 60.108 55.000 12.96 0.00 0.00 3.41
2169 2967 4.816385 TCGGCATCCTGACAATTTATCTTC 59.184 41.667 0.00 0.00 0.00 2.87
2719 3527 9.097257 GCATAATAATGTTTTGTATGGCAAAGT 57.903 29.630 0.00 0.00 39.50 2.66
2819 3627 4.873746 TCTCCACTTCAGACACTAAAGG 57.126 45.455 0.00 0.00 0.00 3.11
2846 3654 5.116180 CGATGGTGCTTTGTTTAGGATCTA 58.884 41.667 0.00 0.00 0.00 1.98
3049 4621 3.849574 TGAGGTGGTTTGATAATCCTGGA 59.150 43.478 0.00 0.00 0.00 3.86
3466 5096 1.202964 TGACGTAAGGAGGGAGTGACA 60.203 52.381 0.00 0.00 46.39 3.58
3467 5097 1.201880 GACGTAAGGAGGGAGTGACAC 59.798 57.143 0.00 0.00 46.39 3.67
3468 5098 1.203025 ACGTAAGGAGGGAGTGACACT 60.203 52.381 8.12 8.12 46.39 3.55
3469 5099 1.202582 CGTAAGGAGGGAGTGACACTG 59.797 57.143 14.14 0.00 29.26 3.66
3470 5100 2.526432 GTAAGGAGGGAGTGACACTGA 58.474 52.381 14.14 0.00 29.26 3.41
3471 5101 1.343069 AAGGAGGGAGTGACACTGAC 58.657 55.000 14.14 5.57 29.26 3.51
3482 5112 4.079253 AGTGACACTGACACCAAGTTTTT 58.921 39.130 7.47 0.00 38.82 1.94
3523 5156 8.892723 TCAGTTTTCATCAATGTCGCTATTATT 58.107 29.630 0.00 0.00 0.00 1.40
3524 5157 8.950961 CAGTTTTCATCAATGTCGCTATTATTG 58.049 33.333 0.00 0.00 34.07 1.90
3525 5158 8.677300 AGTTTTCATCAATGTCGCTATTATTGT 58.323 29.630 0.00 0.00 34.35 2.71
4001 6277 1.182667 TTGCTCTAAGCGTCAGCCTA 58.817 50.000 1.82 0.00 46.26 3.93
4005 6281 1.604755 CTCTAAGCGTCAGCCTATCGT 59.395 52.381 0.00 0.00 46.67 3.73
4023 6299 5.565592 ATCGTTTTGCTTATGCTTCATGA 57.434 34.783 0.00 0.00 40.48 3.07
4140 6416 6.246420 AGAGTGTAGCATTTTTGTAAGCAG 57.754 37.500 0.00 0.00 0.00 4.24
4530 6816 9.039870 ACATCAAATCATTCTCTCGAACTTATC 57.960 33.333 0.00 0.00 30.67 1.75
4635 7787 7.334844 AGCAGCCCTTTATTCTGTTTATTAC 57.665 36.000 0.00 0.00 0.00 1.89
4856 8020 8.158789 AGCTAAAGAGTACGAGATATTCCTAGT 58.841 37.037 0.00 0.00 0.00 2.57
4995 8179 5.100259 CCGTCGTACAGAAACTGATGTTAT 58.900 41.667 5.76 0.00 34.96 1.89
5163 8364 6.773976 TTGTATGGATTCAAATTGGACTCC 57.226 37.500 11.50 11.50 37.20 3.85
5182 8383 3.417101 TCCGTCATTTGGTGCAACTAAT 58.583 40.909 5.54 5.54 37.08 1.73
5273 8487 3.073062 CACTAGGTAGCATATGGGCCTTT 59.927 47.826 4.53 0.00 0.00 3.11
5274 8488 3.722101 ACTAGGTAGCATATGGGCCTTTT 59.278 43.478 4.53 0.00 0.00 2.27
5275 8489 2.949447 AGGTAGCATATGGGCCTTTTG 58.051 47.619 4.53 5.21 0.00 2.44
5276 8490 1.963515 GGTAGCATATGGGCCTTTTGG 59.036 52.381 4.53 0.00 44.18 3.28
5277 8491 2.424234 GGTAGCATATGGGCCTTTTGGA 60.424 50.000 4.53 0.00 44.07 3.53
5278 8492 2.781403 AGCATATGGGCCTTTTGGAT 57.219 45.000 4.53 0.00 44.07 3.41
5287 8507 1.616994 GGCCTTTTGGATACCTGTGCT 60.617 52.381 0.00 0.00 44.07 4.40
5298 8518 0.541392 ACCTGTGCTTCCATATGCGA 59.459 50.000 0.00 0.00 0.00 5.10
5315 8535 7.641411 CCATATGCGACAGAAGTTATTCTTTTG 59.359 37.037 0.00 0.00 43.45 2.44
5371 8591 4.020128 CACTGCTAAAAGACCCTCCTTAGT 60.020 45.833 0.00 0.00 0.00 2.24
5633 8888 2.599677 AGATAGGGCTTTCTCCTACCG 58.400 52.381 0.00 0.00 39.43 4.02
5734 8993 6.084326 ACATCCACAACTAAACCACAATTC 57.916 37.500 0.00 0.00 0.00 2.17
5752 9011 1.737735 CTGCATCGCCGAGTTGTGA 60.738 57.895 0.00 0.00 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 316 1.227943 GCACTGTGCAGAAGGTGGA 60.228 57.895 26.70 0.00 44.26 4.02
278 587 1.346538 GTCAGCTCGATTCAAGCGC 59.653 57.895 0.00 0.00 44.59 5.92
370 679 6.241645 AGTGGATTTGGAGTTAAAGGAGAAG 58.758 40.000 0.00 0.00 0.00 2.85
437 749 8.818622 TTTCTAGTAATCACTGCCTAGAACTA 57.181 34.615 7.32 0.00 42.91 2.24
851 1346 3.744238 AAGTTTTGGTCCCAAATTCGG 57.256 42.857 12.04 0.00 44.14 4.30
906 1402 1.604593 CAGCTCCACCCCAAACAGG 60.605 63.158 0.00 0.00 37.03 4.00
969 1467 3.123620 CGCTGCTTGCACTCCTCC 61.124 66.667 0.00 0.00 43.06 4.30
1029 1527 1.048601 TCTTCTTCCTGTCGTTGGCT 58.951 50.000 0.00 0.00 0.00 4.75
1048 1546 0.322277 TAGTCCTCGACGACCTGCTT 60.322 55.000 10.44 0.00 37.67 3.91
1275 1775 1.208052 GTGCTCTAGGGACATCAAGCA 59.792 52.381 0.00 0.00 37.41 3.91
1321 1821 4.516698 GGTGCAAGAGTTCAGAGAAATCAA 59.483 41.667 9.46 0.00 0.00 2.57
1436 1938 9.856162 ATGTAAAGTTACCTAGAAAAACTCCAA 57.144 29.630 0.00 0.00 32.42 3.53
1663 2429 5.995282 CACACAACACCTTAACTATCCAAGA 59.005 40.000 0.00 0.00 0.00 3.02
1769 2557 6.605471 ACCTACACTGAATAGTTCATGTCA 57.395 37.500 0.00 0.00 39.30 3.58
2059 2857 8.463930 TGACTCTGGATTGAACAAAGTAAATT 57.536 30.769 0.00 0.00 0.00 1.82
2169 2967 4.156190 AGAAGCAATTGTGATCAGCAGAAG 59.844 41.667 7.40 0.00 32.82 2.85
2719 3527 7.898636 ACTAATTTCCCTTCCAACCATATGAAA 59.101 33.333 3.65 0.00 0.00 2.69
2819 3627 3.126343 CCTAAACAAAGCACCATCGGTAC 59.874 47.826 0.00 0.00 32.11 3.34
2846 3654 1.207791 AATCCGCAATCTGACTCCCT 58.792 50.000 0.00 0.00 0.00 4.20
3016 4588 2.344093 ACCACCTCAACCCATAGACT 57.656 50.000 0.00 0.00 0.00 3.24
3049 4621 3.222603 ACGCAGGAAAAAGAGGAACAAT 58.777 40.909 0.00 0.00 0.00 2.71
4001 6277 5.565592 TCATGAAGCATAAGCAAAACGAT 57.434 34.783 0.00 0.00 45.49 3.73
4005 6281 6.814644 CAGGAAATCATGAAGCATAAGCAAAA 59.185 34.615 0.00 0.00 45.49 2.44
4295 6575 3.810386 TGCTGACAGTTATTTAACACGCA 59.190 39.130 3.99 0.00 38.62 5.24
4296 6576 4.148891 GTGCTGACAGTTATTTAACACGC 58.851 43.478 3.99 0.00 38.62 5.34
4400 6686 8.418662 ACCATGAAAGTGATAATCATCCAATTG 58.581 33.333 0.00 0.00 31.65 2.32
4530 6816 7.924947 TGTCAAGAAGTTAGAGAGCATGATATG 59.075 37.037 0.00 0.00 0.00 1.78
4612 7764 6.321435 AGGTAATAAACAGAATAAAGGGCTGC 59.679 38.462 0.00 0.00 33.03 5.25
4613 7765 7.775561 AGAGGTAATAAACAGAATAAAGGGCTG 59.224 37.037 0.00 0.00 35.81 4.85
4635 7787 5.993441 GGACTACAGTAGAAGTAGCTAGAGG 59.007 48.000 14.94 0.00 42.04 3.69
4856 8020 4.717233 CACAGCATGCCCTTTATTTACA 57.283 40.909 15.66 0.00 42.53 2.41
5163 8364 5.046910 AGAATTAGTTGCACCAAATGACG 57.953 39.130 0.00 0.00 0.00 4.35
5182 8383 3.811497 CGGATTTCTCTGCATGCATAGAA 59.189 43.478 32.87 32.87 37.37 2.10
5273 8487 4.717877 CATATGGAAGCACAGGTATCCAA 58.282 43.478 0.00 0.00 44.58 3.53
5274 8488 3.496692 GCATATGGAAGCACAGGTATCCA 60.497 47.826 4.56 0.00 45.42 3.41
5275 8489 3.077359 GCATATGGAAGCACAGGTATCC 58.923 50.000 4.56 0.00 0.00 2.59
5276 8490 2.738846 CGCATATGGAAGCACAGGTATC 59.261 50.000 4.56 0.00 0.00 2.24
5277 8491 2.368548 TCGCATATGGAAGCACAGGTAT 59.631 45.455 4.56 0.00 0.00 2.73
5278 8492 1.760029 TCGCATATGGAAGCACAGGTA 59.240 47.619 4.56 0.00 0.00 3.08
5287 8507 6.582636 AGAATAACTTCTGTCGCATATGGAA 58.417 36.000 4.56 0.00 40.28 3.53
5298 8518 7.275888 TGTGCATCAAAAGAATAACTTCTGT 57.724 32.000 0.00 0.00 40.93 3.41
5339 8559 6.831868 AGGGTCTTTTAGCAGTGTTTCTAAAA 59.168 34.615 11.37 11.37 40.43 1.52
5340 8560 6.362248 AGGGTCTTTTAGCAGTGTTTCTAAA 58.638 36.000 0.00 0.00 34.17 1.85
5341 8561 5.937111 AGGGTCTTTTAGCAGTGTTTCTAA 58.063 37.500 0.00 0.00 0.00 2.10
5465 8708 5.349543 GCAGAAAGCCCAAGTTTAAATCATG 59.650 40.000 0.00 0.00 37.23 3.07
5558 8807 8.495949 GTCAAGCACACGTAGCAATAAATATAT 58.504 33.333 13.73 0.00 0.00 0.86
5698 8957 2.364647 TGTGGATGTCAAAATGCTTGCA 59.635 40.909 0.00 0.00 0.00 4.08
5734 8993 1.086067 ATCACAACTCGGCGATGCAG 61.086 55.000 11.27 0.09 0.00 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.