Multiple sequence alignment - TraesCS7A01G281900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G281900 chr7A 100.000 4840 0 0 1 4840 307235139 307239978 0.000000e+00 8938
1 TraesCS7A01G281900 chr7D 94.110 4024 88 38 516 4479 273831217 273835151 0.000000e+00 5980
2 TraesCS7A01G281900 chr7D 90.187 214 9 2 4627 4840 273835290 273835491 7.980000e-68 268
3 TraesCS7A01G281900 chr7D 97.087 103 3 0 4479 4581 273835187 273835289 1.790000e-39 174
4 TraesCS7A01G281900 chr7B 93.893 3750 103 50 551 4248 264066423 264062748 0.000000e+00 5541
5 TraesCS7A01G281900 chr7B 93.450 229 10 3 4613 4840 264058422 264058198 7.760000e-88 335
6 TraesCS7A01G281900 chr7B 95.620 137 6 0 4343 4479 264062527 264062391 2.270000e-53 220
7 TraesCS7A01G281900 chr4B 77.089 371 53 24 6 352 453741471 453741833 8.270000e-43 185
8 TraesCS7A01G281900 chr4B 77.285 361 48 24 6 341 453756336 453756687 1.070000e-41 182


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G281900 chr7A 307235139 307239978 4839 False 8938.000000 8938 100.000000 1 4840 1 chr7A.!!$F1 4839
1 TraesCS7A01G281900 chr7D 273831217 273835491 4274 False 2140.666667 5980 93.794667 516 4840 3 chr7D.!!$F1 4324
2 TraesCS7A01G281900 chr7B 264058198 264066423 8225 True 2032.000000 5541 94.321000 551 4840 3 chr7B.!!$R1 4289

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
713 717 0.030908 GGCAACCGGTATCTCTCTCG 59.969 60.0 8.00 0.00 0.00 4.04 F
816 820 0.034616 CCAATCCATCTCCTCGCCTC 59.965 60.0 0.00 0.00 0.00 4.70 F
819 823 0.541764 ATCCATCTCCTCGCCTCTCC 60.542 60.0 0.00 0.00 0.00 3.71 F
843 847 0.813210 CTCTCCATCCTGCGAAAGGC 60.813 60.0 0.00 0.00 46.92 4.35 F
2137 2160 1.279496 TCTGCTTGCCTGTATGGACT 58.721 50.0 0.00 0.00 38.35 3.85 F
2867 2893 1.085091 GCTCAATCAGTGCCTGTGAG 58.915 55.0 13.71 13.71 37.53 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2311 2337 1.202855 ACAATCAGTGCTCAGCTGGTT 60.203 47.619 15.13 0.00 37.75 3.67 R
2396 2422 2.266554 CAAAACTTTGAAGCGGCAACA 58.733 42.857 1.45 0.00 40.55 3.33 R
2759 2785 6.824553 ACATGTCATCTAGATAGCACAACAT 58.175 36.000 4.54 6.16 0.00 2.71 R
2832 2858 0.533085 GAGCAATAGGGAACGGAGGC 60.533 60.000 0.00 0.00 0.00 4.70 R
2953 2979 0.976641 TCTTCGTCATGGCCTTCTGT 59.023 50.000 3.32 0.00 0.00 3.41 R
4234 4297 0.538057 CAAAAGGAGGCCTCACTGCA 60.538 55.000 33.29 0.00 30.89 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 4.803426 CGTGGAGAGGCGCAGGTC 62.803 72.222 10.83 2.06 0.00 3.85
44 45 4.803426 GTGGAGAGGCGCAGGTCG 62.803 72.222 10.83 0.00 42.12 4.79
120 121 3.044305 GCACAGGTCGTGGCAGTC 61.044 66.667 0.00 0.00 46.45 3.51
121 122 2.357517 CACAGGTCGTGGCAGTCC 60.358 66.667 0.00 0.00 42.34 3.85
122 123 3.991051 ACAGGTCGTGGCAGTCCG 61.991 66.667 0.00 0.00 34.14 4.79
123 124 4.742201 CAGGTCGTGGCAGTCCGG 62.742 72.222 0.00 0.00 34.14 5.14
170 171 2.430921 CGTGGAGACGCACAGGTC 60.431 66.667 0.00 0.00 42.37 3.85
171 172 2.430921 GTGGAGACGCACAGGTCG 60.431 66.667 0.00 0.00 41.81 4.79
172 173 2.596338 TGGAGACGCACAGGTCGA 60.596 61.111 0.00 0.00 41.81 4.20
173 174 2.179517 GGAGACGCACAGGTCGAG 59.820 66.667 0.00 0.00 41.81 4.04
174 175 2.179517 GAGACGCACAGGTCGAGG 59.820 66.667 0.00 0.00 41.81 4.63
175 176 3.973267 GAGACGCACAGGTCGAGGC 62.973 68.421 0.00 0.00 41.81 4.70
180 181 4.436998 CACAGGTCGAGGCGGTCC 62.437 72.222 0.00 0.00 0.00 4.46
199 200 4.531912 GCGACGCGTGGAGATCGA 62.532 66.667 25.99 0.00 36.70 3.59
200 201 2.351322 CGACGCGTGGAGATCGAG 60.351 66.667 20.70 0.00 36.70 4.04
201 202 2.024871 GACGCGTGGAGATCGAGG 59.975 66.667 20.70 0.00 32.91 4.63
202 203 4.194720 ACGCGTGGAGATCGAGGC 62.195 66.667 12.93 0.15 32.91 4.70
203 204 4.193334 CGCGTGGAGATCGAGGCA 62.193 66.667 0.00 0.00 35.66 4.75
204 205 2.583593 GCGTGGAGATCGAGGCAC 60.584 66.667 4.90 0.00 35.91 5.01
205 206 2.885113 CGTGGAGATCGAGGCACA 59.115 61.111 0.00 0.00 0.00 4.57
206 207 1.439228 CGTGGAGATCGAGGCACAT 59.561 57.895 0.00 0.00 0.00 3.21
207 208 0.873312 CGTGGAGATCGAGGCACATG 60.873 60.000 0.00 0.00 0.00 3.21
208 209 0.176680 GTGGAGATCGAGGCACATGT 59.823 55.000 0.00 0.00 0.00 3.21
209 210 0.461548 TGGAGATCGAGGCACATGTC 59.538 55.000 0.00 0.00 0.00 3.06
210 211 0.596083 GGAGATCGAGGCACATGTCG 60.596 60.000 0.00 0.00 37.54 4.35
213 214 2.181777 TCGAGGCACATGTCGAGC 59.818 61.111 0.00 0.00 40.19 5.03
214 215 3.250323 CGAGGCACATGTCGAGCG 61.250 66.667 0.00 0.00 38.50 5.03
215 216 2.887568 GAGGCACATGTCGAGCGG 60.888 66.667 0.00 0.00 30.93 5.52
216 217 3.649277 GAGGCACATGTCGAGCGGT 62.649 63.158 0.00 0.00 30.93 5.68
217 218 3.188786 GGCACATGTCGAGCGGTC 61.189 66.667 4.06 4.06 30.93 4.79
218 219 3.188786 GCACATGTCGAGCGGTCC 61.189 66.667 9.39 0.00 0.00 4.46
219 220 2.880879 CACATGTCGAGCGGTCCG 60.881 66.667 6.99 6.99 0.00 4.79
220 221 3.060000 ACATGTCGAGCGGTCCGA 61.060 61.111 17.49 7.03 0.00 4.55
224 225 4.808238 GTCGAGCGGTCCGACGAC 62.808 72.222 31.76 31.76 45.23 4.34
231 232 4.124351 GGTCCGACGACGCATGGA 62.124 66.667 0.64 0.00 40.17 3.41
232 233 2.579787 GTCCGACGACGCATGGAG 60.580 66.667 0.64 0.00 38.29 3.86
233 234 2.748647 TCCGACGACGCATGGAGA 60.749 61.111 0.64 0.00 38.29 3.71
234 235 2.119029 TCCGACGACGCATGGAGAT 61.119 57.895 0.64 0.00 38.29 2.75
235 236 1.658717 CCGACGACGCATGGAGATC 60.659 63.158 0.64 0.00 38.29 2.75
236 237 2.006062 CGACGACGCATGGAGATCG 61.006 63.158 0.00 0.00 40.39 3.69
237 238 1.355563 GACGACGCATGGAGATCGA 59.644 57.895 0.00 0.00 37.97 3.59
238 239 0.658829 GACGACGCATGGAGATCGAG 60.659 60.000 0.00 0.00 37.97 4.04
239 240 1.371022 CGACGCATGGAGATCGAGG 60.371 63.158 0.00 0.00 36.70 4.63
240 241 1.736586 GACGCATGGAGATCGAGGT 59.263 57.895 0.00 0.00 0.00 3.85
241 242 0.596083 GACGCATGGAGATCGAGGTG 60.596 60.000 0.00 0.00 0.00 4.00
242 243 1.300465 CGCATGGAGATCGAGGTGG 60.300 63.158 0.00 0.00 0.00 4.61
243 244 1.826024 GCATGGAGATCGAGGTGGT 59.174 57.895 0.00 0.00 0.00 4.16
244 245 0.531532 GCATGGAGATCGAGGTGGTG 60.532 60.000 0.00 0.00 0.00 4.17
245 246 0.105593 CATGGAGATCGAGGTGGTGG 59.894 60.000 0.00 0.00 0.00 4.61
246 247 1.690219 ATGGAGATCGAGGTGGTGGC 61.690 60.000 0.00 0.00 0.00 5.01
247 248 2.060980 GGAGATCGAGGTGGTGGCT 61.061 63.158 0.00 0.00 0.00 4.75
248 249 1.142748 GAGATCGAGGTGGTGGCTG 59.857 63.158 0.00 0.00 0.00 4.85
249 250 2.187946 GATCGAGGTGGTGGCTGG 59.812 66.667 0.00 0.00 0.00 4.85
250 251 2.607750 ATCGAGGTGGTGGCTGGT 60.608 61.111 0.00 0.00 0.00 4.00
251 252 2.859273 GATCGAGGTGGTGGCTGGTG 62.859 65.000 0.00 0.00 0.00 4.17
252 253 4.704833 CGAGGTGGTGGCTGGTGG 62.705 72.222 0.00 0.00 0.00 4.61
272 273 4.279507 AGGGTGGGGTGGTGGCTA 62.280 66.667 0.00 0.00 0.00 3.93
273 274 3.728373 GGGTGGGGTGGTGGCTAG 61.728 72.222 0.00 0.00 0.00 3.42
274 275 4.426313 GGTGGGGTGGTGGCTAGC 62.426 72.222 6.04 6.04 0.00 3.42
275 276 3.646715 GTGGGGTGGTGGCTAGCA 61.647 66.667 18.24 0.00 0.00 3.49
276 277 3.329889 TGGGGTGGTGGCTAGCAG 61.330 66.667 18.24 0.00 34.49 4.24
279 280 4.082523 GGTGGTGGCTAGCAGCGA 62.083 66.667 18.24 2.58 43.62 4.93
280 281 2.510238 GTGGTGGCTAGCAGCGAG 60.510 66.667 18.24 0.00 43.62 5.03
281 282 2.679996 TGGTGGCTAGCAGCGAGA 60.680 61.111 18.24 0.00 43.62 4.04
282 283 2.202810 GGTGGCTAGCAGCGAGAC 60.203 66.667 18.24 3.62 43.62 3.36
283 284 2.580867 GTGGCTAGCAGCGAGACG 60.581 66.667 18.24 0.00 43.62 4.18
284 285 3.062466 TGGCTAGCAGCGAGACGT 61.062 61.111 18.24 0.00 43.62 4.34
285 286 2.580867 GGCTAGCAGCGAGACGTG 60.581 66.667 18.24 0.00 43.62 4.49
286 287 2.580867 GCTAGCAGCGAGACGTGG 60.581 66.667 10.63 0.00 0.00 4.94
287 288 2.103143 CTAGCAGCGAGACGTGGG 59.897 66.667 0.00 0.00 0.00 4.61
288 289 3.417275 CTAGCAGCGAGACGTGGGG 62.417 68.421 0.00 0.00 0.00 4.96
291 292 3.991051 CAGCGAGACGTGGGGTGT 61.991 66.667 0.00 0.00 0.00 4.16
292 293 3.991051 AGCGAGACGTGGGGTGTG 61.991 66.667 0.00 0.00 0.00 3.82
294 295 3.612681 CGAGACGTGGGGTGTGGT 61.613 66.667 0.00 0.00 0.00 4.16
295 296 2.342648 GAGACGTGGGGTGTGGTC 59.657 66.667 0.00 0.00 0.00 4.02
296 297 3.569049 GAGACGTGGGGTGTGGTCG 62.569 68.421 0.00 0.00 34.68 4.79
297 298 3.608662 GACGTGGGGTGTGGTCGA 61.609 66.667 0.00 0.00 0.00 4.20
298 299 3.569049 GACGTGGGGTGTGGTCGAG 62.569 68.421 0.00 0.00 0.00 4.04
299 300 4.373116 CGTGGGGTGTGGTCGAGG 62.373 72.222 0.00 0.00 0.00 4.63
300 301 4.016706 GTGGGGTGTGGTCGAGGG 62.017 72.222 0.00 0.00 0.00 4.30
301 302 4.242586 TGGGGTGTGGTCGAGGGA 62.243 66.667 0.00 0.00 0.00 4.20
302 303 3.391382 GGGGTGTGGTCGAGGGAG 61.391 72.222 0.00 0.00 0.00 4.30
303 304 3.391382 GGGTGTGGTCGAGGGAGG 61.391 72.222 0.00 0.00 0.00 4.30
304 305 3.391382 GGTGTGGTCGAGGGAGGG 61.391 72.222 0.00 0.00 0.00 4.30
305 306 4.083862 GTGTGGTCGAGGGAGGGC 62.084 72.222 0.00 0.00 0.00 5.19
306 307 4.631740 TGTGGTCGAGGGAGGGCA 62.632 66.667 0.00 0.00 0.00 5.36
307 308 3.775654 GTGGTCGAGGGAGGGCAG 61.776 72.222 0.00 0.00 0.00 4.85
313 314 4.035102 GAGGGAGGGCAGCCGTTT 62.035 66.667 8.37 0.00 0.00 3.60
314 315 3.569200 GAGGGAGGGCAGCCGTTTT 62.569 63.158 8.37 0.00 0.00 2.43
315 316 2.600470 GGGAGGGCAGCCGTTTTT 60.600 61.111 8.37 0.00 0.00 1.94
316 317 2.650778 GGAGGGCAGCCGTTTTTG 59.349 61.111 8.37 0.00 0.00 2.44
317 318 2.200337 GGAGGGCAGCCGTTTTTGT 61.200 57.895 8.37 0.00 0.00 2.83
318 319 1.739667 GAGGGCAGCCGTTTTTGTT 59.260 52.632 8.37 0.00 0.00 2.83
319 320 0.104120 GAGGGCAGCCGTTTTTGTTT 59.896 50.000 8.37 0.00 0.00 2.83
320 321 0.104120 AGGGCAGCCGTTTTTGTTTC 59.896 50.000 5.00 0.00 0.00 2.78
321 322 0.104120 GGGCAGCCGTTTTTGTTTCT 59.896 50.000 5.00 0.00 0.00 2.52
322 323 1.208259 GGCAGCCGTTTTTGTTTCTG 58.792 50.000 0.00 0.00 0.00 3.02
323 324 1.470805 GGCAGCCGTTTTTGTTTCTGT 60.471 47.619 0.00 0.00 0.00 3.41
324 325 2.267426 GCAGCCGTTTTTGTTTCTGTT 58.733 42.857 0.00 0.00 0.00 3.16
325 326 2.670905 GCAGCCGTTTTTGTTTCTGTTT 59.329 40.909 0.00 0.00 0.00 2.83
326 327 3.483411 GCAGCCGTTTTTGTTTCTGTTTG 60.483 43.478 0.00 0.00 0.00 2.93
327 328 3.677596 CAGCCGTTTTTGTTTCTGTTTGT 59.322 39.130 0.00 0.00 0.00 2.83
328 329 3.677596 AGCCGTTTTTGTTTCTGTTTGTG 59.322 39.130 0.00 0.00 0.00 3.33
329 330 3.723542 GCCGTTTTTGTTTCTGTTTGTGC 60.724 43.478 0.00 0.00 0.00 4.57
330 331 3.481146 CCGTTTTTGTTTCTGTTTGTGCG 60.481 43.478 0.00 0.00 0.00 5.34
331 332 3.120451 CGTTTTTGTTTCTGTTTGTGCGT 59.880 39.130 0.00 0.00 0.00 5.24
332 333 4.381983 GTTTTTGTTTCTGTTTGTGCGTG 58.618 39.130 0.00 0.00 0.00 5.34
333 334 2.270275 TTGTTTCTGTTTGTGCGTGG 57.730 45.000 0.00 0.00 0.00 4.94
334 335 1.454201 TGTTTCTGTTTGTGCGTGGA 58.546 45.000 0.00 0.00 0.00 4.02
335 336 1.813178 TGTTTCTGTTTGTGCGTGGAA 59.187 42.857 0.00 0.00 0.00 3.53
336 337 2.159448 TGTTTCTGTTTGTGCGTGGAAG 60.159 45.455 0.00 0.00 0.00 3.46
337 338 2.031258 TTCTGTTTGTGCGTGGAAGA 57.969 45.000 0.00 0.00 0.00 2.87
338 339 1.581934 TCTGTTTGTGCGTGGAAGAG 58.418 50.000 0.00 0.00 0.00 2.85
339 340 0.588252 CTGTTTGTGCGTGGAAGAGG 59.412 55.000 0.00 0.00 0.00 3.69
340 341 0.179234 TGTTTGTGCGTGGAAGAGGA 59.821 50.000 0.00 0.00 0.00 3.71
341 342 1.305201 GTTTGTGCGTGGAAGAGGAA 58.695 50.000 0.00 0.00 0.00 3.36
342 343 1.002792 GTTTGTGCGTGGAAGAGGAAC 60.003 52.381 0.00 0.00 0.00 3.62
343 344 0.878523 TTGTGCGTGGAAGAGGAACG 60.879 55.000 0.00 0.00 40.22 3.95
344 345 2.027625 GTGCGTGGAAGAGGAACGG 61.028 63.158 0.00 0.00 37.77 4.44
345 346 2.204461 TGCGTGGAAGAGGAACGGA 61.204 57.895 0.00 0.00 37.77 4.69
346 347 1.218316 GCGTGGAAGAGGAACGGAT 59.782 57.895 0.00 0.00 37.77 4.18
347 348 0.391263 GCGTGGAAGAGGAACGGATT 60.391 55.000 0.00 0.00 37.77 3.01
348 349 1.134907 GCGTGGAAGAGGAACGGATTA 60.135 52.381 0.00 0.00 37.77 1.75
349 350 2.675889 GCGTGGAAGAGGAACGGATTAA 60.676 50.000 0.00 0.00 37.77 1.40
350 351 3.187700 CGTGGAAGAGGAACGGATTAAG 58.812 50.000 0.00 0.00 33.77 1.85
351 352 3.532542 GTGGAAGAGGAACGGATTAAGG 58.467 50.000 0.00 0.00 0.00 2.69
352 353 3.055312 GTGGAAGAGGAACGGATTAAGGT 60.055 47.826 0.00 0.00 0.00 3.50
353 354 4.161001 GTGGAAGAGGAACGGATTAAGGTA 59.839 45.833 0.00 0.00 0.00 3.08
354 355 4.778958 TGGAAGAGGAACGGATTAAGGTAA 59.221 41.667 0.00 0.00 0.00 2.85
355 356 5.114780 GGAAGAGGAACGGATTAAGGTAAC 58.885 45.833 0.00 0.00 0.00 2.50
356 357 4.382345 AGAGGAACGGATTAAGGTAACG 57.618 45.455 0.00 0.00 46.39 3.18
357 358 4.019174 AGAGGAACGGATTAAGGTAACGA 58.981 43.478 0.00 0.00 46.39 3.85
358 359 4.108336 GAGGAACGGATTAAGGTAACGAC 58.892 47.826 0.00 0.00 46.39 4.34
359 360 3.511146 AGGAACGGATTAAGGTAACGACA 59.489 43.478 0.00 0.00 46.39 4.35
360 361 3.614176 GGAACGGATTAAGGTAACGACAC 59.386 47.826 0.00 0.00 46.39 3.67
361 362 3.940209 ACGGATTAAGGTAACGACACA 57.060 42.857 0.00 0.00 46.39 3.72
362 363 3.841643 ACGGATTAAGGTAACGACACAG 58.158 45.455 0.00 0.00 46.39 3.66
363 364 3.256631 ACGGATTAAGGTAACGACACAGT 59.743 43.478 0.00 0.00 46.39 3.55
364 365 3.611113 CGGATTAAGGTAACGACACAGTG 59.389 47.826 0.00 0.00 46.39 3.66
365 366 3.930848 GGATTAAGGTAACGACACAGTGG 59.069 47.826 5.31 0.00 46.39 4.00
366 367 3.389925 TTAAGGTAACGACACAGTGGG 57.610 47.619 5.31 0.00 46.39 4.61
367 368 1.125633 AAGGTAACGACACAGTGGGT 58.874 50.000 0.00 0.00 46.39 4.51
368 369 1.999648 AGGTAACGACACAGTGGGTA 58.000 50.000 0.00 0.00 46.39 3.69
369 370 2.318908 AGGTAACGACACAGTGGGTAA 58.681 47.619 0.00 0.00 46.39 2.85
370 371 2.901839 AGGTAACGACACAGTGGGTAAT 59.098 45.455 0.00 0.00 46.39 1.89
371 372 4.088634 AGGTAACGACACAGTGGGTAATA 58.911 43.478 0.00 0.00 46.39 0.98
372 373 4.082026 AGGTAACGACACAGTGGGTAATAC 60.082 45.833 0.00 2.12 46.39 1.89
373 374 4.082026 GGTAACGACACAGTGGGTAATACT 60.082 45.833 0.00 0.00 0.00 2.12
374 375 8.239259 AGGTAACGACACAGTGGGTAATACTG 62.239 46.154 0.00 0.00 46.35 2.74
382 383 4.776349 CAGTGGGTAATACTGTAATGGCA 58.224 43.478 0.00 0.00 40.43 4.92
383 384 5.376625 CAGTGGGTAATACTGTAATGGCAT 58.623 41.667 0.00 0.00 40.43 4.40
384 385 5.239306 CAGTGGGTAATACTGTAATGGCATG 59.761 44.000 0.00 0.00 40.43 4.06
385 386 4.518970 GTGGGTAATACTGTAATGGCATGG 59.481 45.833 0.00 0.00 0.00 3.66
386 387 4.167113 TGGGTAATACTGTAATGGCATGGT 59.833 41.667 0.00 0.89 0.00 3.55
387 388 4.518970 GGGTAATACTGTAATGGCATGGTG 59.481 45.833 0.00 0.00 0.00 4.17
388 389 4.518970 GGTAATACTGTAATGGCATGGTGG 59.481 45.833 0.00 0.00 0.00 4.61
389 390 2.727123 TACTGTAATGGCATGGTGGG 57.273 50.000 0.00 0.00 0.00 4.61
390 391 0.704076 ACTGTAATGGCATGGTGGGT 59.296 50.000 0.00 0.00 0.00 4.51
391 392 1.919654 ACTGTAATGGCATGGTGGGTA 59.080 47.619 0.00 0.00 0.00 3.69
392 393 2.310349 ACTGTAATGGCATGGTGGGTAA 59.690 45.455 0.00 0.00 0.00 2.85
393 394 3.052944 ACTGTAATGGCATGGTGGGTAAT 60.053 43.478 0.00 0.00 0.00 1.89
394 395 3.960102 CTGTAATGGCATGGTGGGTAATT 59.040 43.478 0.00 0.00 0.00 1.40
395 396 5.130705 TGTAATGGCATGGTGGGTAATTA 57.869 39.130 0.00 0.00 0.00 1.40
396 397 5.519808 TGTAATGGCATGGTGGGTAATTAA 58.480 37.500 0.00 0.00 0.00 1.40
397 398 6.139671 TGTAATGGCATGGTGGGTAATTAAT 58.860 36.000 0.00 0.00 0.00 1.40
398 399 5.549742 AATGGCATGGTGGGTAATTAATG 57.450 39.130 0.00 0.00 0.00 1.90
399 400 3.987745 TGGCATGGTGGGTAATTAATGT 58.012 40.909 0.00 0.00 0.00 2.71
400 401 5.130705 TGGCATGGTGGGTAATTAATGTA 57.869 39.130 0.00 0.00 0.00 2.29
401 402 5.710646 TGGCATGGTGGGTAATTAATGTAT 58.289 37.500 0.00 0.00 0.00 2.29
402 403 6.853490 TGGCATGGTGGGTAATTAATGTATA 58.147 36.000 0.00 0.00 0.00 1.47
403 404 7.298374 TGGCATGGTGGGTAATTAATGTATAA 58.702 34.615 0.00 0.00 0.00 0.98
404 405 7.785028 TGGCATGGTGGGTAATTAATGTATAAA 59.215 33.333 0.00 0.00 0.00 1.40
405 406 8.643324 GGCATGGTGGGTAATTAATGTATAAAA 58.357 33.333 0.00 0.00 0.00 1.52
406 407 9.471084 GCATGGTGGGTAATTAATGTATAAAAC 57.529 33.333 0.00 0.00 0.00 2.43
409 410 8.675504 TGGTGGGTAATTAATGTATAAAACACG 58.324 33.333 0.00 0.00 42.09 4.49
410 411 8.676401 GGTGGGTAATTAATGTATAAAACACGT 58.324 33.333 0.00 0.00 42.09 4.49
426 427 3.340727 CGTTTAGTACGCTGGAGGG 57.659 57.895 0.00 0.00 44.26 4.30
427 428 0.179119 CGTTTAGTACGCTGGAGGGG 60.179 60.000 0.00 0.00 44.26 4.79
428 429 0.461516 GTTTAGTACGCTGGAGGGGC 60.462 60.000 0.00 0.00 0.00 5.80
436 437 4.742201 CTGGAGGGGCGTGACGTG 62.742 72.222 6.91 0.00 0.00 4.49
438 439 4.736896 GGAGGGGCGTGACGTGTC 62.737 72.222 6.91 0.00 0.00 3.67
439 440 3.986006 GAGGGGCGTGACGTGTCA 61.986 66.667 6.91 0.00 37.24 3.58
440 441 3.916392 GAGGGGCGTGACGTGTCAG 62.916 68.421 6.91 0.00 40.75 3.51
441 442 3.986006 GGGGCGTGACGTGTCAGA 61.986 66.667 6.91 0.00 40.75 3.27
442 443 2.261671 GGGCGTGACGTGTCAGAT 59.738 61.111 6.91 0.00 40.75 2.90
443 444 1.805945 GGGCGTGACGTGTCAGATC 60.806 63.158 6.91 0.00 40.75 2.75
444 445 2.152699 GGCGTGACGTGTCAGATCG 61.153 63.158 6.91 5.13 40.75 3.69
445 446 1.442184 GCGTGACGTGTCAGATCGT 60.442 57.895 6.91 3.77 40.75 3.73
446 447 0.179207 GCGTGACGTGTCAGATCGTA 60.179 55.000 6.91 0.00 40.75 3.43
447 448 1.799181 CGTGACGTGTCAGATCGTAG 58.201 55.000 2.31 0.00 40.75 3.51
448 449 1.529214 CGTGACGTGTCAGATCGTAGG 60.529 57.143 2.31 0.00 40.75 3.18
449 450 1.736126 GTGACGTGTCAGATCGTAGGA 59.264 52.381 2.31 0.00 40.75 2.94
450 451 2.355132 GTGACGTGTCAGATCGTAGGAT 59.645 50.000 2.31 0.00 40.75 3.24
451 452 3.014623 TGACGTGTCAGATCGTAGGATT 58.985 45.455 0.00 0.00 40.39 3.01
452 453 3.442625 TGACGTGTCAGATCGTAGGATTT 59.557 43.478 0.00 0.00 40.39 2.17
453 454 3.770666 ACGTGTCAGATCGTAGGATTTG 58.229 45.455 9.13 9.13 38.52 2.32
454 455 3.442625 ACGTGTCAGATCGTAGGATTTGA 59.557 43.478 13.04 13.04 40.38 2.69
465 466 5.769367 TCGTAGGATTTGACGAATAGGATG 58.231 41.667 0.00 0.00 44.56 3.51
466 467 5.533528 TCGTAGGATTTGACGAATAGGATGA 59.466 40.000 0.00 0.00 44.56 2.92
467 468 6.040054 TCGTAGGATTTGACGAATAGGATGAA 59.960 38.462 0.00 0.00 44.56 2.57
468 469 6.868864 CGTAGGATTTGACGAATAGGATGAAT 59.131 38.462 0.00 0.00 41.60 2.57
469 470 7.385205 CGTAGGATTTGACGAATAGGATGAATT 59.615 37.037 0.00 0.00 41.60 2.17
470 471 9.706691 GTAGGATTTGACGAATAGGATGAATTA 57.293 33.333 0.00 0.00 0.00 1.40
471 472 8.839310 AGGATTTGACGAATAGGATGAATTAG 57.161 34.615 0.00 0.00 0.00 1.73
472 473 8.432805 AGGATTTGACGAATAGGATGAATTAGT 58.567 33.333 0.00 0.00 0.00 2.24
473 474 9.057089 GGATTTGACGAATAGGATGAATTAGTT 57.943 33.333 0.00 0.00 0.00 2.24
475 476 9.838339 ATTTGACGAATAGGATGAATTAGTTCT 57.162 29.630 0.00 0.00 35.33 3.01
476 477 9.667107 TTTGACGAATAGGATGAATTAGTTCTT 57.333 29.630 0.00 0.00 35.33 2.52
477 478 8.873215 TGACGAATAGGATGAATTAGTTCTTC 57.127 34.615 5.57 5.57 37.63 2.87
478 479 7.648112 TGACGAATAGGATGAATTAGTTCTTCG 59.352 37.037 12.87 12.87 38.95 3.79
479 480 6.421202 ACGAATAGGATGAATTAGTTCTTCGC 59.579 38.462 13.82 6.19 37.72 4.70
480 481 6.128795 CGAATAGGATGAATTAGTTCTTCGCC 60.129 42.308 7.49 0.00 38.65 5.54
481 482 3.809905 AGGATGAATTAGTTCTTCGCCC 58.190 45.455 7.49 0.00 38.65 6.13
482 483 3.456277 AGGATGAATTAGTTCTTCGCCCT 59.544 43.478 7.49 0.00 38.65 5.19
483 484 4.080299 AGGATGAATTAGTTCTTCGCCCTT 60.080 41.667 7.49 0.00 38.65 3.95
484 485 4.640647 GGATGAATTAGTTCTTCGCCCTTT 59.359 41.667 7.49 0.00 38.65 3.11
485 486 5.220873 GGATGAATTAGTTCTTCGCCCTTTC 60.221 44.000 7.49 0.00 38.65 2.62
486 487 4.647611 TGAATTAGTTCTTCGCCCTTTCA 58.352 39.130 0.00 0.00 35.33 2.69
487 488 5.253330 TGAATTAGTTCTTCGCCCTTTCAT 58.747 37.500 0.00 0.00 35.33 2.57
488 489 5.710099 TGAATTAGTTCTTCGCCCTTTCATT 59.290 36.000 0.00 0.00 35.33 2.57
489 490 6.208599 TGAATTAGTTCTTCGCCCTTTCATTT 59.791 34.615 0.00 0.00 35.33 2.32
490 491 6.590234 ATTAGTTCTTCGCCCTTTCATTTT 57.410 33.333 0.00 0.00 0.00 1.82
491 492 4.937201 AGTTCTTCGCCCTTTCATTTTT 57.063 36.364 0.00 0.00 0.00 1.94
510 511 3.606886 TGGAGACAAGTTCTTCGCC 57.393 52.632 0.00 0.00 37.44 5.54
511 512 0.034896 TGGAGACAAGTTCTTCGCCC 59.965 55.000 2.40 0.00 37.44 6.13
512 513 0.321996 GGAGACAAGTTCTTCGCCCT 59.678 55.000 0.00 0.00 33.22 5.19
513 514 1.270893 GGAGACAAGTTCTTCGCCCTT 60.271 52.381 0.00 0.00 33.22 3.95
514 515 2.495084 GAGACAAGTTCTTCGCCCTTT 58.505 47.619 0.00 0.00 33.22 3.11
515 516 2.480802 GAGACAAGTTCTTCGCCCTTTC 59.519 50.000 0.00 0.00 33.22 2.62
516 517 2.158813 AGACAAGTTCTTCGCCCTTTCA 60.159 45.455 0.00 0.00 0.00 2.69
517 518 2.814336 GACAAGTTCTTCGCCCTTTCAT 59.186 45.455 0.00 0.00 0.00 2.57
518 519 3.222603 ACAAGTTCTTCGCCCTTTCATT 58.777 40.909 0.00 0.00 0.00 2.57
519 520 3.636764 ACAAGTTCTTCGCCCTTTCATTT 59.363 39.130 0.00 0.00 0.00 2.32
520 521 4.099419 ACAAGTTCTTCGCCCTTTCATTTT 59.901 37.500 0.00 0.00 0.00 1.82
521 522 4.937201 AGTTCTTCGCCCTTTCATTTTT 57.063 36.364 0.00 0.00 0.00 1.94
586 588 4.640647 CCTAGACCATGGGCTAAGTTTTTC 59.359 45.833 27.59 6.18 0.00 2.29
590 592 5.011023 AGACCATGGGCTAAGTTTTTCTTTG 59.989 40.000 22.06 0.00 37.56 2.77
591 593 4.040339 ACCATGGGCTAAGTTTTTCTTTGG 59.960 41.667 18.09 0.00 37.56 3.28
592 594 4.283212 CCATGGGCTAAGTTTTTCTTTGGA 59.717 41.667 2.85 0.00 37.56 3.53
713 717 0.030908 GGCAACCGGTATCTCTCTCG 59.969 60.000 8.00 0.00 0.00 4.04
717 721 0.470766 ACCGGTATCTCTCTCGCTCT 59.529 55.000 4.49 0.00 0.00 4.09
719 723 1.270625 CCGGTATCTCTCTCGCTCTCT 60.271 57.143 0.00 0.00 0.00 3.10
720 724 2.066262 CGGTATCTCTCTCGCTCTCTC 58.934 57.143 0.00 0.00 0.00 3.20
721 725 2.423577 GGTATCTCTCTCGCTCTCTCC 58.576 57.143 0.00 0.00 0.00 3.71
722 726 2.423577 GTATCTCTCTCGCTCTCTCCC 58.576 57.143 0.00 0.00 0.00 4.30
723 727 0.110486 ATCTCTCTCGCTCTCTCCCC 59.890 60.000 0.00 0.00 0.00 4.81
724 728 0.986019 TCTCTCTCGCTCTCTCCCCT 60.986 60.000 0.00 0.00 0.00 4.79
725 729 0.535102 CTCTCTCGCTCTCTCCCCTC 60.535 65.000 0.00 0.00 0.00 4.30
726 730 1.891919 CTCTCGCTCTCTCCCCTCG 60.892 68.421 0.00 0.00 0.00 4.63
727 731 3.591835 CTCGCTCTCTCCCCTCGC 61.592 72.222 0.00 0.00 0.00 5.03
773 777 4.186241 GTCATAAGAGACGAGTCGAGTC 57.814 50.000 21.50 14.57 38.81 3.36
774 778 2.858941 TCATAAGAGACGAGTCGAGTCG 59.141 50.000 34.64 34.64 45.76 4.18
775 779 2.643933 TAAGAGACGAGTCGAGTCGA 57.356 50.000 40.68 20.24 42.85 4.20
776 780 1.352114 AAGAGACGAGTCGAGTCGAG 58.648 55.000 40.68 19.43 42.85 4.04
812 816 0.598680 GACGCCAATCCATCTCCTCG 60.599 60.000 0.00 0.00 0.00 4.63
816 820 0.034616 CCAATCCATCTCCTCGCCTC 59.965 60.000 0.00 0.00 0.00 4.70
817 821 1.047002 CAATCCATCTCCTCGCCTCT 58.953 55.000 0.00 0.00 0.00 3.69
818 822 1.000731 CAATCCATCTCCTCGCCTCTC 59.999 57.143 0.00 0.00 0.00 3.20
819 823 0.541764 ATCCATCTCCTCGCCTCTCC 60.542 60.000 0.00 0.00 0.00 3.71
820 824 1.152567 CCATCTCCTCGCCTCTCCT 60.153 63.158 0.00 0.00 0.00 3.69
843 847 0.813210 CTCTCCATCCTGCGAAAGGC 60.813 60.000 0.00 0.00 46.92 4.35
1217 1226 3.443045 GCAAGCACCATGGTCCGG 61.443 66.667 16.53 5.22 0.00 5.14
1240 1249 2.261671 CGACCTCAACGGGACCAG 59.738 66.667 0.00 0.00 36.97 4.00
1281 1290 6.484364 TGATGGTTGCTATCTCTCACAATA 57.516 37.500 0.00 0.00 0.00 1.90
1388 1406 8.408043 TTGACTGATTTTTACCATCTCAATGT 57.592 30.769 0.00 0.00 0.00 2.71
1414 1432 5.421693 TGGCATTCATGTAGGTTTTAGCATT 59.578 36.000 0.00 0.00 0.00 3.56
1466 1484 4.333649 CCATGTCGCATCATTAGTTTGTCT 59.666 41.667 0.00 0.00 0.00 3.41
1509 1527 9.197694 CCATCTGCTGAGTTGTATACTTATTAC 57.802 37.037 4.17 0.00 37.17 1.89
1534 1552 1.674359 TTGTCTGCGCCTTTTCTTCA 58.326 45.000 4.18 0.00 0.00 3.02
1753 1776 4.230455 TGTCCCTCAATTTCACCCAAATT 58.770 39.130 0.00 0.00 44.25 1.82
1768 1791 5.345741 CACCCAAATTGAGATAAAAACTGCG 59.654 40.000 0.00 0.00 0.00 5.18
2137 2160 1.279496 TCTGCTTGCCTGTATGGACT 58.721 50.000 0.00 0.00 38.35 3.85
2161 2186 8.617809 ACTGTCTCTCTTATCTATTTCTTCGTC 58.382 37.037 0.00 0.00 0.00 4.20
2265 2290 6.335471 TGAGAATGTTCATGCAAGTCATTT 57.665 33.333 12.97 6.71 31.79 2.32
2333 2359 1.884579 CCAGCTGAGCACTGATTGTTT 59.115 47.619 17.39 0.00 37.32 2.83
2396 2422 6.153340 CCTGATAATGTTCATGGTCCTGTTTT 59.847 38.462 0.00 0.00 0.00 2.43
2402 2428 1.686052 TCATGGTCCTGTTTTGTTGCC 59.314 47.619 0.00 0.00 0.00 4.52
2419 2445 3.784701 TGCCGCTTCAAAGTTTTGTTA 57.215 38.095 4.67 0.00 39.18 2.41
2656 2682 2.046507 CCAGAGGAGCCAGCACAC 60.047 66.667 0.00 0.00 0.00 3.82
2759 2785 6.672593 ACCTTCCTTTCCTTCATATGCATTA 58.327 36.000 3.54 0.00 0.00 1.90
2832 2858 1.200020 CTAAGAACTGCAAAAGCCCCG 59.800 52.381 0.00 0.00 0.00 5.73
2867 2893 1.085091 GCTCAATCAGTGCCTGTGAG 58.915 55.000 13.71 13.71 37.53 3.51
2953 2979 7.624549 AGATAAGCCAAAATCTGACTTCTACA 58.375 34.615 0.00 0.00 31.25 2.74
3095 3123 3.234353 TGTTTATGTTGGGAATGTGCCA 58.766 40.909 0.00 0.00 35.47 4.92
3427 3468 4.148838 TGCTTAGGTTTGGCTTGTACAAT 58.851 39.130 9.13 0.00 0.00 2.71
3585 3645 8.986477 AAGTAAGTTGTCCATTTTTATGCATC 57.014 30.769 0.19 0.00 0.00 3.91
3649 3709 1.001974 AGCCGTGCTTGTGAAGATACA 59.998 47.619 0.00 0.00 33.89 2.29
3755 3815 2.824936 CAGAGGATATGCGAGAGGTGAT 59.175 50.000 0.00 0.00 0.00 3.06
3910 3973 3.251004 GTGGAGCAGGAGTTGTAAAACTG 59.749 47.826 2.08 0.00 32.22 3.16
4127 4190 1.129251 GTGATGGTGATGTGTTCGCTG 59.871 52.381 0.00 0.00 35.11 5.18
4143 4206 1.797348 CGCTGCGTCCTTTTTGTGTTT 60.797 47.619 14.93 0.00 0.00 2.83
4171 4234 3.989698 TTAGCCAGCAGAGACGCGC 62.990 63.158 5.73 0.00 36.85 6.86
4174 4237 3.782244 CCAGCAGAGACGCGCAAC 61.782 66.667 5.73 0.00 36.85 4.17
4216 4279 3.563223 CAATCCCCATCTGCATCTCTTT 58.437 45.455 0.00 0.00 0.00 2.52
4230 4293 5.764686 TGCATCTCTTTCGCCATATATGTTT 59.235 36.000 11.73 0.00 0.00 2.83
4234 4297 4.460263 TCTTTCGCCATATATGTTTGCCT 58.540 39.130 11.73 0.00 0.00 4.75
4235 4298 4.275689 TCTTTCGCCATATATGTTTGCCTG 59.724 41.667 11.73 0.00 0.00 4.85
4236 4299 1.879380 TCGCCATATATGTTTGCCTGC 59.121 47.619 11.73 5.11 0.00 4.85
4237 4300 1.608109 CGCCATATATGTTTGCCTGCA 59.392 47.619 11.73 0.00 0.00 4.41
4238 4301 2.351060 CGCCATATATGTTTGCCTGCAG 60.351 50.000 6.78 6.78 0.00 4.41
4264 4350 6.101734 TGAGGCCTCCTTTTGTTCATAGATAT 59.898 38.462 29.95 0.00 31.76 1.63
4329 4415 8.777413 TGATGCTTAGAATAGGAAATTTCATCG 58.223 33.333 19.49 2.34 0.00 3.84
4369 4563 9.679661 ATTTGTTTTCCTTTAAAATGTGAAGGT 57.320 25.926 0.00 0.00 39.22 3.50
4572 4802 2.677228 GGTGCCATGCTGTACCCT 59.323 61.111 0.00 0.00 0.00 4.34
4587 4817 2.203451 CCTGGGGATGGCATGCTC 60.203 66.667 18.92 15.79 0.00 4.26
4611 4841 2.078849 TGTGCTGGTGTCATCGTTAG 57.921 50.000 0.00 0.00 0.00 2.34
4613 4843 1.993370 GTGCTGGTGTCATCGTTAGTC 59.007 52.381 0.00 0.00 0.00 2.59
4614 4844 1.893137 TGCTGGTGTCATCGTTAGTCT 59.107 47.619 0.00 0.00 0.00 3.24
4629 8717 5.121768 TCGTTAGTCTTTTGCTATCAAAGGC 59.878 40.000 0.00 0.00 42.50 4.35
4636 8724 1.153168 GCTATCAAAGGCAGCCCGA 60.153 57.895 8.22 2.59 35.76 5.14
4679 8767 1.562672 GCTGGCTTGGTCTCCCCTAA 61.563 60.000 0.00 0.00 0.00 2.69
4705 8793 0.623617 ATAAAGGAGGAACCGGGGCT 60.624 55.000 6.32 0.00 44.74 5.19
4790 8878 1.523938 GGCATTACACCTCCTCGGC 60.524 63.158 0.00 0.00 35.61 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 4.803426 GACCTGCGCCTCTCCACG 62.803 72.222 4.18 0.00 0.00 4.94
27 28 4.803426 CGACCTGCGCCTCTCCAC 62.803 72.222 4.18 0.00 0.00 4.02
105 106 3.991051 CGGACTGCCACGACCTGT 61.991 66.667 0.00 0.00 0.00 4.00
106 107 4.742201 CCGGACTGCCACGACCTG 62.742 72.222 0.00 0.00 0.00 4.00
154 155 2.430921 CGACCTGTGCGTCTCCAC 60.431 66.667 0.00 0.00 36.28 4.02
155 156 2.596338 TCGACCTGTGCGTCTCCA 60.596 61.111 0.00 0.00 0.00 3.86
156 157 2.179517 CTCGACCTGTGCGTCTCC 59.820 66.667 0.00 0.00 0.00 3.71
157 158 2.179517 CCTCGACCTGTGCGTCTC 59.820 66.667 0.00 0.00 0.00 3.36
158 159 4.057428 GCCTCGACCTGTGCGTCT 62.057 66.667 0.00 0.00 0.00 4.18
163 164 4.436998 GGACCGCCTCGACCTGTG 62.437 72.222 0.00 0.00 0.00 3.66
182 183 4.531912 TCGATCTCCACGCGTCGC 62.532 66.667 9.86 7.29 34.33 5.19
183 184 2.351322 CTCGATCTCCACGCGTCG 60.351 66.667 9.86 9.46 35.55 5.12
184 185 2.024871 CCTCGATCTCCACGCGTC 59.975 66.667 9.86 0.00 0.00 5.19
185 186 4.194720 GCCTCGATCTCCACGCGT 62.195 66.667 5.58 5.58 0.00 6.01
186 187 4.193334 TGCCTCGATCTCCACGCG 62.193 66.667 3.53 3.53 0.00 6.01
187 188 2.583593 GTGCCTCGATCTCCACGC 60.584 66.667 0.00 0.00 0.00 5.34
188 189 0.873312 CATGTGCCTCGATCTCCACG 60.873 60.000 0.00 0.00 0.00 4.94
189 190 0.176680 ACATGTGCCTCGATCTCCAC 59.823 55.000 0.00 0.00 0.00 4.02
190 191 0.461548 GACATGTGCCTCGATCTCCA 59.538 55.000 1.15 0.00 0.00 3.86
191 192 0.596083 CGACATGTGCCTCGATCTCC 60.596 60.000 1.15 0.00 31.24 3.71
192 193 0.382158 TCGACATGTGCCTCGATCTC 59.618 55.000 1.15 0.00 34.04 2.75
193 194 0.383590 CTCGACATGTGCCTCGATCT 59.616 55.000 1.15 0.00 38.22 2.75
194 195 1.211818 GCTCGACATGTGCCTCGATC 61.212 60.000 1.15 0.00 38.22 3.69
195 196 1.227089 GCTCGACATGTGCCTCGAT 60.227 57.895 1.15 0.00 38.22 3.59
196 197 2.181777 GCTCGACATGTGCCTCGA 59.818 61.111 1.15 4.99 37.37 4.04
197 198 3.250323 CGCTCGACATGTGCCTCG 61.250 66.667 1.15 0.00 33.53 4.63
198 199 2.887568 CCGCTCGACATGTGCCTC 60.888 66.667 1.15 0.00 33.53 4.70
199 200 3.649277 GACCGCTCGACATGTGCCT 62.649 63.158 1.15 0.00 33.53 4.75
200 201 3.188786 GACCGCTCGACATGTGCC 61.189 66.667 1.15 0.00 33.53 5.01
201 202 3.188786 GGACCGCTCGACATGTGC 61.189 66.667 1.15 0.00 0.00 4.57
202 203 2.880879 CGGACCGCTCGACATGTG 60.881 66.667 1.15 0.00 0.00 3.21
203 204 3.060000 TCGGACCGCTCGACATGT 61.060 61.111 9.66 0.00 0.00 3.21
214 215 4.124351 TCCATGCGTCGTCGGACC 62.124 66.667 3.90 0.00 40.64 4.46
215 216 2.337749 ATCTCCATGCGTCGTCGGAC 62.338 60.000 3.90 0.00 40.64 4.79
216 217 2.060004 GATCTCCATGCGTCGTCGGA 62.060 60.000 3.90 0.50 42.23 4.55
217 218 1.658717 GATCTCCATGCGTCGTCGG 60.659 63.158 3.90 0.00 37.56 4.79
218 219 2.006062 CGATCTCCATGCGTCGTCG 61.006 63.158 0.00 0.00 40.37 5.12
219 220 0.658829 CTCGATCTCCATGCGTCGTC 60.659 60.000 0.00 0.00 35.71 4.20
220 221 1.356979 CTCGATCTCCATGCGTCGT 59.643 57.895 0.00 0.00 35.71 4.34
221 222 1.371022 CCTCGATCTCCATGCGTCG 60.371 63.158 0.00 0.00 35.55 5.12
222 223 0.596083 CACCTCGATCTCCATGCGTC 60.596 60.000 0.00 0.00 0.00 5.19
223 224 1.439228 CACCTCGATCTCCATGCGT 59.561 57.895 0.00 0.00 0.00 5.24
224 225 1.300465 CCACCTCGATCTCCATGCG 60.300 63.158 0.00 0.00 0.00 4.73
225 226 0.531532 CACCACCTCGATCTCCATGC 60.532 60.000 0.00 0.00 0.00 4.06
226 227 0.105593 CCACCACCTCGATCTCCATG 59.894 60.000 0.00 0.00 0.00 3.66
227 228 1.690219 GCCACCACCTCGATCTCCAT 61.690 60.000 0.00 0.00 0.00 3.41
228 229 2.359169 GCCACCACCTCGATCTCCA 61.359 63.158 0.00 0.00 0.00 3.86
229 230 2.060980 AGCCACCACCTCGATCTCC 61.061 63.158 0.00 0.00 0.00 3.71
230 231 1.142748 CAGCCACCACCTCGATCTC 59.857 63.158 0.00 0.00 0.00 2.75
231 232 2.362369 CCAGCCACCACCTCGATCT 61.362 63.158 0.00 0.00 0.00 2.75
232 233 2.187946 CCAGCCACCACCTCGATC 59.812 66.667 0.00 0.00 0.00 3.69
233 234 2.607750 ACCAGCCACCACCTCGAT 60.608 61.111 0.00 0.00 0.00 3.59
234 235 3.625897 CACCAGCCACCACCTCGA 61.626 66.667 0.00 0.00 0.00 4.04
235 236 4.704833 CCACCAGCCACCACCTCG 62.705 72.222 0.00 0.00 0.00 4.63
255 256 4.279507 TAGCCACCACCCCACCCT 62.280 66.667 0.00 0.00 0.00 4.34
256 257 3.728373 CTAGCCACCACCCCACCC 61.728 72.222 0.00 0.00 0.00 4.61
257 258 4.426313 GCTAGCCACCACCCCACC 62.426 72.222 2.29 0.00 0.00 4.61
258 259 3.628646 CTGCTAGCCACCACCCCAC 62.629 68.421 13.29 0.00 0.00 4.61
259 260 3.329889 CTGCTAGCCACCACCCCA 61.330 66.667 13.29 0.00 0.00 4.96
260 261 4.803908 GCTGCTAGCCACCACCCC 62.804 72.222 13.29 0.00 34.48 4.95
262 263 4.082523 TCGCTGCTAGCCACCACC 62.083 66.667 13.29 0.00 38.18 4.61
263 264 2.510238 CTCGCTGCTAGCCACCAC 60.510 66.667 13.29 0.00 38.18 4.16
264 265 2.679996 TCTCGCTGCTAGCCACCA 60.680 61.111 13.29 0.00 38.18 4.17
265 266 2.202810 GTCTCGCTGCTAGCCACC 60.203 66.667 13.29 0.00 38.18 4.61
266 267 2.580867 CGTCTCGCTGCTAGCCAC 60.581 66.667 13.29 2.85 38.18 5.01
267 268 3.062466 ACGTCTCGCTGCTAGCCA 61.062 61.111 13.29 0.00 38.18 4.75
268 269 2.580867 CACGTCTCGCTGCTAGCC 60.581 66.667 13.29 0.00 38.18 3.93
269 270 2.580867 CCACGTCTCGCTGCTAGC 60.581 66.667 8.10 8.10 38.02 3.42
270 271 2.103143 CCCACGTCTCGCTGCTAG 59.897 66.667 0.00 0.00 0.00 3.42
271 272 3.449227 CCCCACGTCTCGCTGCTA 61.449 66.667 0.00 0.00 0.00 3.49
274 275 3.991051 ACACCCCACGTCTCGCTG 61.991 66.667 0.00 0.00 0.00 5.18
275 276 3.991051 CACACCCCACGTCTCGCT 61.991 66.667 0.00 0.00 0.00 4.93
277 278 3.569049 GACCACACCCCACGTCTCG 62.569 68.421 0.00 0.00 0.00 4.04
278 279 2.342648 GACCACACCCCACGTCTC 59.657 66.667 0.00 0.00 0.00 3.36
279 280 3.612681 CGACCACACCCCACGTCT 61.613 66.667 0.00 0.00 0.00 4.18
280 281 3.569049 CTCGACCACACCCCACGTC 62.569 68.421 0.00 0.00 0.00 4.34
281 282 3.612681 CTCGACCACACCCCACGT 61.613 66.667 0.00 0.00 0.00 4.49
282 283 4.373116 CCTCGACCACACCCCACG 62.373 72.222 0.00 0.00 0.00 4.94
283 284 4.016706 CCCTCGACCACACCCCAC 62.017 72.222 0.00 0.00 0.00 4.61
284 285 4.242586 TCCCTCGACCACACCCCA 62.243 66.667 0.00 0.00 0.00 4.96
285 286 3.391382 CTCCCTCGACCACACCCC 61.391 72.222 0.00 0.00 0.00 4.95
286 287 3.391382 CCTCCCTCGACCACACCC 61.391 72.222 0.00 0.00 0.00 4.61
287 288 3.391382 CCCTCCCTCGACCACACC 61.391 72.222 0.00 0.00 0.00 4.16
288 289 4.083862 GCCCTCCCTCGACCACAC 62.084 72.222 0.00 0.00 0.00 3.82
289 290 4.631740 TGCCCTCCCTCGACCACA 62.632 66.667 0.00 0.00 0.00 4.17
290 291 3.775654 CTGCCCTCCCTCGACCAC 61.776 72.222 0.00 0.00 0.00 4.16
296 297 3.569200 AAAACGGCTGCCCTCCCTC 62.569 63.158 14.12 0.00 0.00 4.30
297 298 3.146828 AAAAACGGCTGCCCTCCCT 62.147 57.895 14.12 0.00 0.00 4.20
298 299 2.600470 AAAAACGGCTGCCCTCCC 60.600 61.111 14.12 0.00 0.00 4.30
299 300 1.744320 AACAAAAACGGCTGCCCTCC 61.744 55.000 14.12 0.00 0.00 4.30
300 301 0.104120 AAACAAAAACGGCTGCCCTC 59.896 50.000 14.12 0.00 0.00 4.30
301 302 0.104120 GAAACAAAAACGGCTGCCCT 59.896 50.000 14.12 0.00 0.00 5.19
302 303 0.104120 AGAAACAAAAACGGCTGCCC 59.896 50.000 14.12 0.00 0.00 5.36
303 304 1.208259 CAGAAACAAAAACGGCTGCC 58.792 50.000 9.11 9.11 0.00 4.85
304 305 1.921243 ACAGAAACAAAAACGGCTGC 58.079 45.000 0.00 0.00 0.00 5.25
305 306 3.677596 ACAAACAGAAACAAAAACGGCTG 59.322 39.130 0.00 0.00 0.00 4.85
306 307 3.677596 CACAAACAGAAACAAAAACGGCT 59.322 39.130 0.00 0.00 0.00 5.52
307 308 3.723542 GCACAAACAGAAACAAAAACGGC 60.724 43.478 0.00 0.00 0.00 5.68
308 309 3.481146 CGCACAAACAGAAACAAAAACGG 60.481 43.478 0.00 0.00 0.00 4.44
309 310 3.120451 ACGCACAAACAGAAACAAAAACG 59.880 39.130 0.00 0.00 0.00 3.60
310 311 4.381983 CACGCACAAACAGAAACAAAAAC 58.618 39.130 0.00 0.00 0.00 2.43
311 312 3.430218 CCACGCACAAACAGAAACAAAAA 59.570 39.130 0.00 0.00 0.00 1.94
312 313 2.989840 CCACGCACAAACAGAAACAAAA 59.010 40.909 0.00 0.00 0.00 2.44
313 314 2.229062 TCCACGCACAAACAGAAACAAA 59.771 40.909 0.00 0.00 0.00 2.83
314 315 1.813178 TCCACGCACAAACAGAAACAA 59.187 42.857 0.00 0.00 0.00 2.83
315 316 1.454201 TCCACGCACAAACAGAAACA 58.546 45.000 0.00 0.00 0.00 2.83
316 317 2.096819 TCTTCCACGCACAAACAGAAAC 59.903 45.455 0.00 0.00 0.00 2.78
317 318 2.354510 CTCTTCCACGCACAAACAGAAA 59.645 45.455 0.00 0.00 0.00 2.52
318 319 1.939934 CTCTTCCACGCACAAACAGAA 59.060 47.619 0.00 0.00 0.00 3.02
319 320 1.581934 CTCTTCCACGCACAAACAGA 58.418 50.000 0.00 0.00 0.00 3.41
320 321 0.588252 CCTCTTCCACGCACAAACAG 59.412 55.000 0.00 0.00 0.00 3.16
321 322 0.179234 TCCTCTTCCACGCACAAACA 59.821 50.000 0.00 0.00 0.00 2.83
322 323 1.002792 GTTCCTCTTCCACGCACAAAC 60.003 52.381 0.00 0.00 0.00 2.93
323 324 1.305201 GTTCCTCTTCCACGCACAAA 58.695 50.000 0.00 0.00 0.00 2.83
324 325 0.878523 CGTTCCTCTTCCACGCACAA 60.879 55.000 0.00 0.00 0.00 3.33
325 326 1.300620 CGTTCCTCTTCCACGCACA 60.301 57.895 0.00 0.00 0.00 4.57
326 327 2.027625 CCGTTCCTCTTCCACGCAC 61.028 63.158 0.00 0.00 32.43 5.34
327 328 1.541310 ATCCGTTCCTCTTCCACGCA 61.541 55.000 0.00 0.00 32.43 5.24
328 329 0.391263 AATCCGTTCCTCTTCCACGC 60.391 55.000 0.00 0.00 32.43 5.34
329 330 2.953466 TAATCCGTTCCTCTTCCACG 57.047 50.000 0.00 0.00 0.00 4.94
330 331 3.055312 ACCTTAATCCGTTCCTCTTCCAC 60.055 47.826 0.00 0.00 0.00 4.02
331 332 3.178865 ACCTTAATCCGTTCCTCTTCCA 58.821 45.455 0.00 0.00 0.00 3.53
332 333 3.908643 ACCTTAATCCGTTCCTCTTCC 57.091 47.619 0.00 0.00 0.00 3.46
333 334 4.802563 CGTTACCTTAATCCGTTCCTCTTC 59.197 45.833 0.00 0.00 0.00 2.87
334 335 4.463891 TCGTTACCTTAATCCGTTCCTCTT 59.536 41.667 0.00 0.00 0.00 2.85
335 336 4.019174 TCGTTACCTTAATCCGTTCCTCT 58.981 43.478 0.00 0.00 0.00 3.69
336 337 4.108336 GTCGTTACCTTAATCCGTTCCTC 58.892 47.826 0.00 0.00 0.00 3.71
337 338 3.511146 TGTCGTTACCTTAATCCGTTCCT 59.489 43.478 0.00 0.00 0.00 3.36
338 339 3.614176 GTGTCGTTACCTTAATCCGTTCC 59.386 47.826 0.00 0.00 0.00 3.62
339 340 4.236935 TGTGTCGTTACCTTAATCCGTTC 58.763 43.478 0.00 0.00 0.00 3.95
340 341 4.240096 CTGTGTCGTTACCTTAATCCGTT 58.760 43.478 0.00 0.00 0.00 4.44
341 342 3.256631 ACTGTGTCGTTACCTTAATCCGT 59.743 43.478 0.00 0.00 0.00 4.69
342 343 3.611113 CACTGTGTCGTTACCTTAATCCG 59.389 47.826 0.00 0.00 0.00 4.18
343 344 3.930848 CCACTGTGTCGTTACCTTAATCC 59.069 47.826 7.08 0.00 0.00 3.01
344 345 3.930848 CCCACTGTGTCGTTACCTTAATC 59.069 47.826 7.08 0.00 0.00 1.75
345 346 3.325716 ACCCACTGTGTCGTTACCTTAAT 59.674 43.478 7.08 0.00 0.00 1.40
346 347 2.699846 ACCCACTGTGTCGTTACCTTAA 59.300 45.455 7.08 0.00 0.00 1.85
347 348 2.318908 ACCCACTGTGTCGTTACCTTA 58.681 47.619 7.08 0.00 0.00 2.69
348 349 1.125633 ACCCACTGTGTCGTTACCTT 58.874 50.000 7.08 0.00 0.00 3.50
349 350 1.999648 TACCCACTGTGTCGTTACCT 58.000 50.000 7.08 0.00 0.00 3.08
350 351 2.818130 TTACCCACTGTGTCGTTACC 57.182 50.000 7.08 0.00 0.00 2.85
351 352 4.860907 CAGTATTACCCACTGTGTCGTTAC 59.139 45.833 7.08 3.71 38.86 2.50
352 353 5.063180 CAGTATTACCCACTGTGTCGTTA 57.937 43.478 7.08 0.00 38.86 3.18
353 354 3.921677 CAGTATTACCCACTGTGTCGTT 58.078 45.455 7.08 0.00 38.86 3.85
354 355 3.587797 CAGTATTACCCACTGTGTCGT 57.412 47.619 7.08 5.13 38.86 4.34
361 362 5.376625 CATGCCATTACAGTATTACCCACT 58.623 41.667 0.00 0.00 0.00 4.00
362 363 4.518970 CCATGCCATTACAGTATTACCCAC 59.481 45.833 0.00 0.00 0.00 4.61
363 364 4.167113 ACCATGCCATTACAGTATTACCCA 59.833 41.667 0.00 0.00 0.00 4.51
364 365 4.518970 CACCATGCCATTACAGTATTACCC 59.481 45.833 0.00 0.00 0.00 3.69
365 366 4.518970 CCACCATGCCATTACAGTATTACC 59.481 45.833 0.00 0.00 0.00 2.85
366 367 4.518970 CCCACCATGCCATTACAGTATTAC 59.481 45.833 0.00 0.00 0.00 1.89
367 368 4.167113 ACCCACCATGCCATTACAGTATTA 59.833 41.667 0.00 0.00 0.00 0.98
368 369 3.052944 ACCCACCATGCCATTACAGTATT 60.053 43.478 0.00 0.00 0.00 1.89
369 370 2.513738 ACCCACCATGCCATTACAGTAT 59.486 45.455 0.00 0.00 0.00 2.12
370 371 1.919654 ACCCACCATGCCATTACAGTA 59.080 47.619 0.00 0.00 0.00 2.74
371 372 0.704076 ACCCACCATGCCATTACAGT 59.296 50.000 0.00 0.00 0.00 3.55
372 373 2.727123 TACCCACCATGCCATTACAG 57.273 50.000 0.00 0.00 0.00 2.74
373 374 3.678965 ATTACCCACCATGCCATTACA 57.321 42.857 0.00 0.00 0.00 2.41
374 375 6.041523 ACATTAATTACCCACCATGCCATTAC 59.958 38.462 0.00 0.00 0.00 1.89
375 376 6.139671 ACATTAATTACCCACCATGCCATTA 58.860 36.000 0.00 0.00 0.00 1.90
376 377 4.968080 ACATTAATTACCCACCATGCCATT 59.032 37.500 0.00 0.00 0.00 3.16
377 378 4.555689 ACATTAATTACCCACCATGCCAT 58.444 39.130 0.00 0.00 0.00 4.40
378 379 3.987745 ACATTAATTACCCACCATGCCA 58.012 40.909 0.00 0.00 0.00 4.92
379 380 7.768807 TTATACATTAATTACCCACCATGCC 57.231 36.000 0.00 0.00 0.00 4.40
380 381 9.471084 GTTTTATACATTAATTACCCACCATGC 57.529 33.333 0.00 0.00 0.00 4.06
383 384 8.675504 CGTGTTTTATACATTAATTACCCACCA 58.324 33.333 0.00 0.00 39.39 4.17
384 385 8.676401 ACGTGTTTTATACATTAATTACCCACC 58.324 33.333 0.00 0.00 39.39 4.61
409 410 0.461516 GCCCCTCCAGCGTACTAAAC 60.462 60.000 0.00 0.00 0.00 2.01
410 411 1.902556 GCCCCTCCAGCGTACTAAA 59.097 57.895 0.00 0.00 0.00 1.85
411 412 3.625099 GCCCCTCCAGCGTACTAA 58.375 61.111 0.00 0.00 0.00 2.24
419 420 4.742201 CACGTCACGCCCCTCCAG 62.742 72.222 0.00 0.00 0.00 3.86
421 422 4.736896 GACACGTCACGCCCCTCC 62.737 72.222 0.00 0.00 0.00 4.30
422 423 3.916392 CTGACACGTCACGCCCCTC 62.916 68.421 0.00 0.00 35.46 4.30
423 424 3.991051 CTGACACGTCACGCCCCT 61.991 66.667 0.00 0.00 35.46 4.79
424 425 3.296709 ATCTGACACGTCACGCCCC 62.297 63.158 0.00 0.00 35.46 5.80
425 426 1.805945 GATCTGACACGTCACGCCC 60.806 63.158 0.00 0.00 35.46 6.13
426 427 2.152699 CGATCTGACACGTCACGCC 61.153 63.158 0.00 0.00 35.46 5.68
427 428 0.179207 TACGATCTGACACGTCACGC 60.179 55.000 13.33 0.00 42.61 5.34
428 429 1.529214 CCTACGATCTGACACGTCACG 60.529 57.143 13.33 0.00 42.61 4.35
429 430 1.736126 TCCTACGATCTGACACGTCAC 59.264 52.381 13.33 0.00 42.61 3.67
430 431 2.103537 TCCTACGATCTGACACGTCA 57.896 50.000 13.33 0.00 42.61 4.35
431 432 3.694535 AATCCTACGATCTGACACGTC 57.305 47.619 13.33 0.00 42.61 4.34
432 433 3.442625 TCAAATCCTACGATCTGACACGT 59.557 43.478 14.14 14.14 44.72 4.49
433 434 3.791887 GTCAAATCCTACGATCTGACACG 59.208 47.826 4.00 4.90 43.31 4.49
434 435 3.791887 CGTCAAATCCTACGATCTGACAC 59.208 47.826 8.34 0.00 43.80 3.67
435 436 3.692593 TCGTCAAATCCTACGATCTGACA 59.307 43.478 8.34 0.00 43.80 3.58
436 437 4.288670 TCGTCAAATCCTACGATCTGAC 57.711 45.455 0.00 0.00 41.31 3.51
437 438 4.976224 TTCGTCAAATCCTACGATCTGA 57.024 40.909 0.00 0.00 46.44 3.27
438 439 5.859114 CCTATTCGTCAAATCCTACGATCTG 59.141 44.000 0.00 0.00 46.44 2.90
439 440 5.768662 TCCTATTCGTCAAATCCTACGATCT 59.231 40.000 0.00 0.00 46.44 2.75
440 441 6.010294 TCCTATTCGTCAAATCCTACGATC 57.990 41.667 0.00 0.00 46.44 3.69
441 442 6.208797 TCATCCTATTCGTCAAATCCTACGAT 59.791 38.462 0.00 0.00 46.44 3.73
442 443 5.533528 TCATCCTATTCGTCAAATCCTACGA 59.466 40.000 0.00 0.00 45.64 3.43
443 444 5.769367 TCATCCTATTCGTCAAATCCTACG 58.231 41.667 0.00 0.00 40.40 3.51
444 445 8.608844 AATTCATCCTATTCGTCAAATCCTAC 57.391 34.615 0.00 0.00 0.00 3.18
445 446 9.929180 CTAATTCATCCTATTCGTCAAATCCTA 57.071 33.333 0.00 0.00 0.00 2.94
446 447 8.432805 ACTAATTCATCCTATTCGTCAAATCCT 58.567 33.333 0.00 0.00 0.00 3.24
447 448 8.608844 ACTAATTCATCCTATTCGTCAAATCC 57.391 34.615 0.00 0.00 0.00 3.01
449 450 9.838339 AGAACTAATTCATCCTATTCGTCAAAT 57.162 29.630 0.00 0.00 37.29 2.32
450 451 9.667107 AAGAACTAATTCATCCTATTCGTCAAA 57.333 29.630 0.00 0.00 37.29 2.69
451 452 9.314321 GAAGAACTAATTCATCCTATTCGTCAA 57.686 33.333 0.00 0.00 37.29 3.18
452 453 7.648112 CGAAGAACTAATTCATCCTATTCGTCA 59.352 37.037 0.00 0.00 37.29 4.35
453 454 7.358517 GCGAAGAACTAATTCATCCTATTCGTC 60.359 40.741 0.00 0.00 37.35 4.20
454 455 6.421202 GCGAAGAACTAATTCATCCTATTCGT 59.579 38.462 0.00 0.00 37.35 3.85
455 456 6.128795 GGCGAAGAACTAATTCATCCTATTCG 60.129 42.308 0.00 0.00 37.74 3.34
456 457 6.147985 GGGCGAAGAACTAATTCATCCTATTC 59.852 42.308 0.00 0.00 37.29 1.75
457 458 5.998363 GGGCGAAGAACTAATTCATCCTATT 59.002 40.000 0.00 0.00 37.29 1.73
458 459 5.308237 AGGGCGAAGAACTAATTCATCCTAT 59.692 40.000 0.00 0.00 37.29 2.57
459 460 4.654262 AGGGCGAAGAACTAATTCATCCTA 59.346 41.667 0.00 0.00 37.29 2.94
460 461 3.456277 AGGGCGAAGAACTAATTCATCCT 59.544 43.478 0.00 0.00 37.29 3.24
461 462 3.809905 AGGGCGAAGAACTAATTCATCC 58.190 45.455 0.00 0.00 37.29 3.51
462 463 5.354234 TGAAAGGGCGAAGAACTAATTCATC 59.646 40.000 0.00 0.00 37.29 2.92
463 464 5.253330 TGAAAGGGCGAAGAACTAATTCAT 58.747 37.500 0.00 0.00 37.29 2.57
464 465 4.647611 TGAAAGGGCGAAGAACTAATTCA 58.352 39.130 0.00 0.00 37.29 2.57
465 466 5.819825 ATGAAAGGGCGAAGAACTAATTC 57.180 39.130 0.00 0.00 34.78 2.17
466 467 6.590234 AAATGAAAGGGCGAAGAACTAATT 57.410 33.333 0.00 0.00 0.00 1.40
467 468 6.590234 AAAATGAAAGGGCGAAGAACTAAT 57.410 33.333 0.00 0.00 0.00 1.73
468 469 6.399639 AAAAATGAAAGGGCGAAGAACTAA 57.600 33.333 0.00 0.00 0.00 2.24
470 471 4.937201 AAAAATGAAAGGGCGAAGAACT 57.063 36.364 0.00 0.00 0.00 3.01
488 489 3.066203 GGCGAAGAACTTGTCTCCAAAAA 59.934 43.478 0.00 0.00 34.56 1.94
489 490 2.616842 GGCGAAGAACTTGTCTCCAAAA 59.383 45.455 0.00 0.00 34.56 2.44
490 491 2.218603 GGCGAAGAACTTGTCTCCAAA 58.781 47.619 0.00 0.00 34.56 3.28
491 492 1.542547 GGGCGAAGAACTTGTCTCCAA 60.543 52.381 0.00 0.00 34.56 3.53
492 493 0.034896 GGGCGAAGAACTTGTCTCCA 59.965 55.000 0.00 0.00 34.56 3.86
493 494 0.321996 AGGGCGAAGAACTTGTCTCC 59.678 55.000 0.00 0.00 34.56 3.71
494 495 2.171341 AAGGGCGAAGAACTTGTCTC 57.829 50.000 0.00 0.00 34.56 3.36
495 496 2.158813 TGAAAGGGCGAAGAACTTGTCT 60.159 45.455 0.00 0.00 38.69 3.41
496 497 2.218603 TGAAAGGGCGAAGAACTTGTC 58.781 47.619 0.00 0.00 0.00 3.18
497 498 2.341846 TGAAAGGGCGAAGAACTTGT 57.658 45.000 0.00 0.00 0.00 3.16
498 499 3.923017 AATGAAAGGGCGAAGAACTTG 57.077 42.857 0.00 0.00 0.00 3.16
499 500 4.937201 AAAATGAAAGGGCGAAGAACTT 57.063 36.364 0.00 0.00 0.00 2.66
500 501 4.937201 AAAAATGAAAGGGCGAAGAACT 57.063 36.364 0.00 0.00 0.00 3.01
520 521 8.383175 AGATGGTATAGAACTTGTCTCCAAAAA 58.617 33.333 0.00 0.00 37.84 1.94
521 522 7.918076 AGATGGTATAGAACTTGTCTCCAAAA 58.082 34.615 0.00 0.00 37.84 2.44
522 523 7.496346 AGATGGTATAGAACTTGTCTCCAAA 57.504 36.000 0.00 0.00 37.84 3.28
523 524 7.496346 AAGATGGTATAGAACTTGTCTCCAA 57.504 36.000 0.00 0.00 37.84 3.53
524 525 7.180229 TCAAAGATGGTATAGAACTTGTCTCCA 59.820 37.037 0.00 0.00 37.84 3.86
525 526 7.556844 TCAAAGATGGTATAGAACTTGTCTCC 58.443 38.462 0.00 0.00 37.84 3.71
526 527 9.606631 ATTCAAAGATGGTATAGAACTTGTCTC 57.393 33.333 0.00 0.00 37.84 3.36
586 588 2.440409 CCATGGTCTCCACTTCCAAAG 58.560 52.381 2.57 0.00 35.80 2.77
590 592 1.077429 GCCCATGGTCTCCACTTCC 60.077 63.158 11.73 0.00 35.80 3.46
591 593 1.077429 GGCCCATGGTCTCCACTTC 60.077 63.158 11.73 0.00 35.80 3.01
592 594 1.434513 TTGGCCCATGGTCTCCACTT 61.435 55.000 11.73 0.00 35.80 3.16
772 776 1.970114 GTGGGTGGACTCGACTCGA 60.970 63.158 0.29 0.29 0.00 4.04
773 777 2.567049 GTGGGTGGACTCGACTCG 59.433 66.667 0.00 0.00 0.00 4.18
774 778 2.567049 CGTGGGTGGACTCGACTC 59.433 66.667 0.00 0.00 0.00 3.36
775 779 3.681835 GCGTGGGTGGACTCGACT 61.682 66.667 0.00 0.00 0.00 4.18
812 816 0.188342 ATGGAGAGGAGAGGAGAGGC 59.812 60.000 0.00 0.00 0.00 4.70
816 820 1.999648 CAGGATGGAGAGGAGAGGAG 58.000 60.000 0.00 0.00 0.00 3.69
817 821 0.105760 GCAGGATGGAGAGGAGAGGA 60.106 60.000 0.00 0.00 35.86 3.71
818 822 1.462731 CGCAGGATGGAGAGGAGAGG 61.463 65.000 0.00 0.00 35.86 3.69
819 823 0.467106 TCGCAGGATGGAGAGGAGAG 60.467 60.000 0.00 0.00 35.86 3.20
820 824 0.033109 TTCGCAGGATGGAGAGGAGA 60.033 55.000 0.00 0.00 35.86 3.71
1322 1338 1.134848 TCACAAAAGCACAGCCCAAAC 60.135 47.619 0.00 0.00 0.00 2.93
1388 1406 5.244851 TGCTAAAACCTACATGAATGCCAAA 59.755 36.000 0.00 0.00 0.00 3.28
1414 1432 1.100510 ATACCACGAGCGCAGAAGTA 58.899 50.000 11.47 10.61 0.00 2.24
1466 1484 4.518590 CAGATGGACAAACACCACATACAA 59.481 41.667 0.00 0.00 40.36 2.41
1509 1527 0.307760 AAAGGCGCAGACAAAACGAG 59.692 50.000 10.83 0.00 39.87 4.18
1534 1552 9.236006 AGAACAGCATCAATAAGTAAACTCAAT 57.764 29.630 0.00 0.00 0.00 2.57
1753 1776 5.212194 GCAAAGTTCGCAGTTTTTATCTCA 58.788 37.500 0.00 0.00 0.00 3.27
1768 1791 1.273327 CCCCATGAGTTGGCAAAGTTC 59.727 52.381 0.00 0.91 44.97 3.01
2137 2160 7.494952 TCGACGAAGAAATAGATAAGAGAGACA 59.505 37.037 0.00 0.00 0.00 3.41
2277 2303 8.782137 AAACTACCATTTCTATTATTGCCCAT 57.218 30.769 0.00 0.00 0.00 4.00
2311 2337 1.202855 ACAATCAGTGCTCAGCTGGTT 60.203 47.619 15.13 0.00 37.75 3.67
2333 2359 8.765488 TTCTCCATGGAAGCATTATAATTTGA 57.235 30.769 17.00 1.00 0.00 2.69
2396 2422 2.266554 CAAAACTTTGAAGCGGCAACA 58.733 42.857 1.45 0.00 40.55 3.33
2452 2478 7.672983 TTGACTTTCTTCATGAATGTACTCC 57.327 36.000 8.96 0.00 41.30 3.85
2759 2785 6.824553 ACATGTCATCTAGATAGCACAACAT 58.175 36.000 4.54 6.16 0.00 2.71
2832 2858 0.533085 GAGCAATAGGGAACGGAGGC 60.533 60.000 0.00 0.00 0.00 4.70
2867 2893 4.612264 TCTGTTGTAGGGTGAGGTTTAC 57.388 45.455 0.00 0.00 0.00 2.01
2953 2979 0.976641 TCTTCGTCATGGCCTTCTGT 59.023 50.000 3.32 0.00 0.00 3.41
3010 3038 7.552330 AGCAAACAATGTGGAACTTAAACAAAT 59.448 29.630 0.00 0.00 38.04 2.32
3095 3123 5.564550 AGATCAGCCTCAGTTACATTTTGT 58.435 37.500 0.00 0.00 0.00 2.83
3427 3468 8.952278 CCAGCTAAACTATGGTAAATAACAACA 58.048 33.333 0.00 0.00 0.00 3.33
3755 3815 3.193757 CGGCTACCGCTGTACTCA 58.806 61.111 0.00 0.00 41.17 3.41
4060 4123 4.142026 TGACAGAAGACCGAAAAGAACAGA 60.142 41.667 0.00 0.00 0.00 3.41
4127 4190 1.843753 CGTCAAACACAAAAAGGACGC 59.156 47.619 0.00 0.00 41.05 5.19
4171 4234 2.747855 GCCAGAGAAGGGGCGTTG 60.748 66.667 0.00 0.00 40.93 4.10
4216 4279 1.879380 GCAGGCAAACATATATGGCGA 59.121 47.619 16.96 0.00 45.85 5.54
4234 4297 0.538057 CAAAAGGAGGCCTCACTGCA 60.538 55.000 33.29 0.00 30.89 4.41
4235 4298 0.538287 ACAAAAGGAGGCCTCACTGC 60.538 55.000 33.29 16.47 30.89 4.40
4236 4299 1.882623 GAACAAAAGGAGGCCTCACTG 59.117 52.381 33.29 23.77 30.89 3.66
4237 4300 1.494721 TGAACAAAAGGAGGCCTCACT 59.505 47.619 33.29 23.83 30.89 3.41
4238 4301 1.981256 TGAACAAAAGGAGGCCTCAC 58.019 50.000 33.29 22.02 30.89 3.51
4320 4406 3.356529 AAGCCTGGACTCGATGAAATT 57.643 42.857 0.00 0.00 0.00 1.82
4321 4407 4.696479 ATAAGCCTGGACTCGATGAAAT 57.304 40.909 0.00 0.00 0.00 2.17
4322 4408 5.808366 ATATAAGCCTGGACTCGATGAAA 57.192 39.130 0.00 0.00 0.00 2.69
4324 4410 5.070446 ACAAATATAAGCCTGGACTCGATGA 59.930 40.000 0.00 0.00 0.00 2.92
4325 4411 5.300752 ACAAATATAAGCCTGGACTCGATG 58.699 41.667 0.00 0.00 0.00 3.84
4326 4412 5.552870 ACAAATATAAGCCTGGACTCGAT 57.447 39.130 0.00 0.00 0.00 3.59
4328 4414 6.436843 AAAACAAATATAAGCCTGGACTCG 57.563 37.500 0.00 0.00 0.00 4.18
4329 4415 6.603599 AGGAAAACAAATATAAGCCTGGACTC 59.396 38.462 0.00 0.00 0.00 3.36
4369 4563 9.892444 TCCTATTCTATGTAGGATAGAACCAAA 57.108 33.333 14.37 0.00 42.19 3.28
4406 4600 3.044894 TCCTTTGAAGCCCATTGGTTTT 58.955 40.909 1.20 0.00 34.87 2.43
4527 4757 9.837681 TCCTCCATGACAGATATAATTAGGTAA 57.162 33.333 0.00 0.00 0.00 2.85
4572 4802 1.076559 CAAGAGCATGCCATCCCCA 60.077 57.895 15.66 0.00 0.00 4.96
4587 4817 1.069703 CGATGACACCAGCACAACAAG 60.070 52.381 0.00 0.00 0.00 3.16
4611 4841 3.505836 GCTGCCTTTGATAGCAAAAGAC 58.494 45.455 7.66 0.84 42.96 3.01
4613 4843 2.417787 GGGCTGCCTTTGATAGCAAAAG 60.418 50.000 19.68 2.51 42.96 2.27
4614 4844 1.550072 GGGCTGCCTTTGATAGCAAAA 59.450 47.619 19.68 0.00 42.96 2.44
4636 8724 4.366267 TCTTTCTCTCTTCCCTTGCCTAT 58.634 43.478 0.00 0.00 0.00 2.57
4641 8729 2.571202 AGCCTCTTTCTCTCTTCCCTTG 59.429 50.000 0.00 0.00 0.00 3.61
4679 8767 4.591924 CCCGGTTCCTCCTTTATATACTGT 59.408 45.833 0.00 0.00 0.00 3.55
4705 8793 7.726291 TGTAACATGATTGTTCCCCTTTTTCTA 59.274 33.333 0.00 0.00 42.43 2.10
4790 8878 4.963276 TTGTTTATCCAGATTCAAGCCG 57.037 40.909 0.00 0.00 0.00 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.