Multiple sequence alignment - TraesCS7A01G281000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G281000 chr7A 100.000 2531 0 0 436 2966 303103107 303100577 0.000000e+00 4674.0
1 TraesCS7A01G281000 chr7A 100.000 89 0 0 1 89 303103542 303103454 6.580000e-37 165.0
2 TraesCS7A01G281000 chr7A 75.510 245 35 15 1371 1613 573097002 573096781 2.430000e-16 97.1
3 TraesCS7A01G281000 chr7B 92.871 2567 58 32 450 2966 268453559 268456050 0.000000e+00 3611.0
4 TraesCS7A01G281000 chr7B 93.421 76 4 1 1 76 268453454 268453528 8.690000e-21 111.0
5 TraesCS7A01G281000 chr7B 75.304 247 36 15 1371 1615 533570540 533570317 8.750000e-16 95.3
6 TraesCS7A01G281000 chr7D 92.542 2561 56 34 447 2966 271507892 271505426 0.000000e+00 3546.0
7 TraesCS7A01G281000 chr7D 97.753 89 2 0 1 89 271508003 271507915 1.420000e-33 154.0
8 TraesCS7A01G281000 chr7D 75.281 267 38 18 1371 1634 505603597 505603356 5.230000e-18 102.0
9 TraesCS7A01G281000 chr2A 76.829 246 34 15 1371 1615 697290074 697290297 1.870000e-22 117.0
10 TraesCS7A01G281000 chr2B 76.423 246 35 15 1371 1615 664933892 664934115 8.690000e-21 111.0
11 TraesCS7A01G281000 chr2D 76.016 246 36 15 1371 1615 557258876 557259099 4.040000e-19 106.0
12 TraesCS7A01G281000 chr6A 74.390 246 40 13 1370 1614 488062704 488062481 1.890000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G281000 chr7A 303100577 303103542 2965 True 2419.5 4674 100.0000 1 2966 2 chr7A.!!$R2 2965
1 TraesCS7A01G281000 chr7B 268453454 268456050 2596 False 1861.0 3611 93.1460 1 2966 2 chr7B.!!$F1 2965
2 TraesCS7A01G281000 chr7D 271505426 271508003 2577 True 1850.0 3546 95.1475 1 2966 2 chr7D.!!$R2 2965

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
672 686 0.108898 CTGTCAGCTTCACCTCCTCG 60.109 60.0 0.0 0.0 0.0 4.63 F
906 937 0.325203 AGCCACCAAACCAAACACCT 60.325 50.0 0.0 0.0 0.0 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1777 1849 0.035534 TCCACCAACTGCATGCGTAT 60.036 50.0 14.09 0.0 0.0 3.06 R
2027 2099 0.620556 GTGCTCTTCCTTCCCATGGA 59.379 55.0 15.22 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 76 2.745884 CGAAGCGGTCCATGCCAA 60.746 61.111 0.00 0.00 0.00 4.52
69 77 2.877691 GAAGCGGTCCATGCCAAC 59.122 61.111 0.00 0.00 0.00 3.77
70 78 1.971167 GAAGCGGTCCATGCCAACA 60.971 57.895 0.00 0.00 0.00 3.33
71 79 1.523154 GAAGCGGTCCATGCCAACAA 61.523 55.000 0.00 0.00 0.00 2.83
72 80 1.805428 AAGCGGTCCATGCCAACAAC 61.805 55.000 0.00 0.00 0.00 3.32
73 81 2.560119 GCGGTCCATGCCAACAACA 61.560 57.895 0.00 0.00 0.00 3.33
74 82 2.037053 CGGTCCATGCCAACAACAA 58.963 52.632 0.00 0.00 0.00 2.83
77 85 1.137872 GGTCCATGCCAACAACAACAA 59.862 47.619 0.00 0.00 0.00 2.83
469 477 1.128507 CTGTGTGTGTGTGTGTGTGTC 59.871 52.381 0.00 0.00 0.00 3.67
474 482 1.001406 TGTGTGTGTGTGTGTCTGTGA 59.999 47.619 0.00 0.00 0.00 3.58
475 483 1.393539 GTGTGTGTGTGTGTCTGTGAC 59.606 52.381 0.00 0.00 0.00 3.67
477 485 2.279741 GTGTGTGTGTGTCTGTGACAT 58.720 47.619 3.65 0.00 44.63 3.06
505 516 4.262420 GGAGAAGGAGGAGAAGATGCATAC 60.262 50.000 0.00 0.00 0.00 2.39
655 669 1.068588 TCTGACGGACCAGTTTCACTG 59.931 52.381 0.00 0.00 45.53 3.66
672 686 0.108898 CTGTCAGCTTCACCTCCTCG 60.109 60.000 0.00 0.00 0.00 4.63
711 725 7.906199 ATAGATAGCACCACTACTTCTTCTT 57.094 36.000 0.00 0.00 32.32 2.52
712 726 6.215495 AGATAGCACCACTACTTCTTCTTC 57.785 41.667 0.00 0.00 32.32 2.87
713 727 5.955355 AGATAGCACCACTACTTCTTCTTCT 59.045 40.000 0.00 0.00 32.32 2.85
753 767 1.764054 CTAGTGCTGGGAGGGGAGG 60.764 68.421 0.00 0.00 0.00 4.30
857 883 1.209127 GCACGCCAATTAACACGCT 59.791 52.632 0.00 0.00 0.00 5.07
906 937 0.325203 AGCCACCAAACCAAACACCT 60.325 50.000 0.00 0.00 0.00 4.00
918 949 2.344025 CAAACACCTAACGCTACTCCC 58.656 52.381 0.00 0.00 0.00 4.30
919 950 1.934410 AACACCTAACGCTACTCCCT 58.066 50.000 0.00 0.00 0.00 4.20
920 951 1.472188 ACACCTAACGCTACTCCCTC 58.528 55.000 0.00 0.00 0.00 4.30
921 952 0.745468 CACCTAACGCTACTCCCTCC 59.255 60.000 0.00 0.00 0.00 4.30
1050 1105 2.750637 GAGGACGACAGCTCGGGA 60.751 66.667 0.18 0.00 44.80 5.14
1332 1395 4.265073 CGTTTTGAATGATCCCTCCTCTT 58.735 43.478 0.00 0.00 0.00 2.85
1628 1691 1.703977 AGGTACACCTACCCTACCCT 58.296 55.000 0.00 0.00 46.48 4.34
1629 1692 2.013777 AGGTACACCTACCCTACCCTT 58.986 52.381 0.00 0.00 46.48 3.95
1630 1693 2.023598 AGGTACACCTACCCTACCCTTC 60.024 54.545 0.00 0.00 46.48 3.46
1631 1694 2.023598 GGTACACCTACCCTACCCTTCT 60.024 54.545 0.00 0.00 37.08 2.85
1632 1695 3.567441 GGTACACCTACCCTACCCTTCTT 60.567 52.174 0.00 0.00 37.08 2.52
1633 1696 3.286871 ACACCTACCCTACCCTTCTTT 57.713 47.619 0.00 0.00 0.00 2.52
1637 1700 3.844804 ACCTACCCTACCCTTCTTTTCTG 59.155 47.826 0.00 0.00 0.00 3.02
1638 1701 2.881111 ACCCTACCCTTCTTTTCTGC 57.119 50.000 0.00 0.00 0.00 4.26
1649 1712 1.347050 TCTTTTCTGCTCTGCTCTGCT 59.653 47.619 0.00 0.00 0.00 4.24
1773 1845 2.596338 TCCTCCGTGTCACGCTCA 60.596 61.111 20.01 4.91 40.91 4.26
1774 1846 2.430921 CCTCCGTGTCACGCTCAC 60.431 66.667 20.01 0.00 40.91 3.51
1809 1881 3.330275 GTGGACACCAAGACGCAC 58.670 61.111 0.00 0.00 34.18 5.34
2064 2136 2.858646 GCACGCAAAAAGGAAGAACTCC 60.859 50.000 0.00 0.00 45.81 3.85
2219 2306 1.782752 CTCTCCCCCTCATCTCTCTCT 59.217 57.143 0.00 0.00 0.00 3.10
2220 2307 1.780309 TCTCCCCCTCATCTCTCTCTC 59.220 57.143 0.00 0.00 0.00 3.20
2221 2308 1.782752 CTCCCCCTCATCTCTCTCTCT 59.217 57.143 0.00 0.00 0.00 3.10
2222 2309 1.780309 TCCCCCTCATCTCTCTCTCTC 59.220 57.143 0.00 0.00 0.00 3.20
2223 2310 1.782752 CCCCCTCATCTCTCTCTCTCT 59.217 57.143 0.00 0.00 0.00 3.10
2224 2311 2.224867 CCCCCTCATCTCTCTCTCTCTC 60.225 59.091 0.00 0.00 0.00 3.20
2225 2312 2.713167 CCCCTCATCTCTCTCTCTCTCT 59.287 54.545 0.00 0.00 0.00 3.10
2226 2313 3.244700 CCCCTCATCTCTCTCTCTCTCTC 60.245 56.522 0.00 0.00 0.00 3.20
2227 2314 3.649981 CCCTCATCTCTCTCTCTCTCTCT 59.350 52.174 0.00 0.00 0.00 3.10
2228 2315 4.262808 CCCTCATCTCTCTCTCTCTCTCTC 60.263 54.167 0.00 0.00 0.00 3.20
2229 2316 4.592351 CCTCATCTCTCTCTCTCTCTCTCT 59.408 50.000 0.00 0.00 0.00 3.10
2230 2317 5.279406 CCTCATCTCTCTCTCTCTCTCTCTC 60.279 52.000 0.00 0.00 0.00 3.20
2231 2318 5.462240 TCATCTCTCTCTCTCTCTCTCTCT 58.538 45.833 0.00 0.00 0.00 3.10
2232 2319 5.538053 TCATCTCTCTCTCTCTCTCTCTCTC 59.462 48.000 0.00 0.00 0.00 3.20
2233 2320 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
2234 2321 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2235 2322 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2236 2323 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2237 2324 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2238 2325 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2239 2326 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2240 2327 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2241 2328 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2242 2329 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2243 2330 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2244 2331 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2245 2332 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2246 2333 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2247 2334 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2248 2335 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2310 2397 2.035632 AGGTACATGACTCTAGCAGCC 58.964 52.381 0.00 0.00 0.00 4.85
2339 2428 8.274322 TCCTAGAAGCATTTTTCTGATGGATTA 58.726 33.333 0.00 0.00 37.91 1.75
2372 2461 6.744082 ACGAAAAATACCGCTTAATTAACAGC 59.256 34.615 0.00 0.00 0.00 4.40
2437 2526 5.245751 ACATTGCTCATTGTTCCCACATTAA 59.754 36.000 0.00 0.00 31.06 1.40
2637 2726 4.393371 GTCTCTTGATTTGACCTAGCCAAC 59.607 45.833 0.00 0.00 0.00 3.77
2709 2798 0.389817 TATATGCGGTCCGATGCTGC 60.390 55.000 17.49 0.00 38.62 5.25
2877 2983 6.257411 CGTCAATTCTCTTATGTGATCAAGCT 59.743 38.462 0.00 0.00 0.00 3.74
2880 2986 5.426689 TTCTCTTATGTGATCAAGCTGGT 57.573 39.130 0.00 0.00 0.00 4.00
2882 2988 6.544928 TCTCTTATGTGATCAAGCTGGTTA 57.455 37.500 0.00 0.00 0.00 2.85
2883 2989 6.946340 TCTCTTATGTGATCAAGCTGGTTAA 58.054 36.000 0.00 0.00 0.00 2.01
2885 2991 7.712639 TCTCTTATGTGATCAAGCTGGTTAATC 59.287 37.037 0.00 0.00 0.00 1.75
2886 2992 7.337938 TCTTATGTGATCAAGCTGGTTAATCA 58.662 34.615 1.36 1.36 0.00 2.57
2887 2993 7.496920 TCTTATGTGATCAAGCTGGTTAATCAG 59.503 37.037 11.61 11.61 37.79 2.90
2895 3001 2.348411 CTGGTTAATCAGCCCGGATT 57.652 50.000 0.73 0.00 40.45 3.01
2896 3002 1.949525 CTGGTTAATCAGCCCGGATTG 59.050 52.381 0.73 0.00 37.98 2.67
2899 3005 3.137544 TGGTTAATCAGCCCGGATTGTAT 59.862 43.478 0.73 0.00 37.98 2.29
2902 3008 5.180680 GGTTAATCAGCCCGGATTGTATTAC 59.819 44.000 0.73 0.00 37.98 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
443 451 1.227943 CACACACACACAGAGGGGG 60.228 63.158 0.00 0.00 0.00 5.40
444 452 0.815213 CACACACACACACAGAGGGG 60.815 60.000 0.00 0.00 0.00 4.79
445 453 0.107703 ACACACACACACACAGAGGG 60.108 55.000 0.00 0.00 0.00 4.30
446 454 1.009078 CACACACACACACACAGAGG 58.991 55.000 0.00 0.00 0.00 3.69
447 455 1.394572 CACACACACACACACACAGAG 59.605 52.381 0.00 0.00 0.00 3.35
448 456 1.270571 ACACACACACACACACACAGA 60.271 47.619 0.00 0.00 0.00 3.41
469 477 3.099905 TCCTTCTCCTGGTATGTCACAG 58.900 50.000 0.00 0.00 34.54 3.66
474 482 2.587777 TCTCCTCCTTCTCCTGGTATGT 59.412 50.000 0.00 0.00 0.00 2.29
475 483 3.320610 TCTCCTCCTTCTCCTGGTATG 57.679 52.381 0.00 0.00 0.00 2.39
477 485 2.927007 TCTTCTCCTCCTTCTCCTGGTA 59.073 50.000 0.00 0.00 0.00 3.25
479 487 2.541233 TCTTCTCCTCCTTCTCCTGG 57.459 55.000 0.00 0.00 0.00 4.45
480 488 2.102925 GCATCTTCTCCTCCTTCTCCTG 59.897 54.545 0.00 0.00 0.00 3.86
505 516 1.128200 TTGGACACCGATCCCTATGG 58.872 55.000 0.00 0.00 38.06 2.74
655 669 1.446966 GCGAGGAGGTGAAGCTGAC 60.447 63.158 0.00 0.00 0.00 3.51
672 686 5.985530 TGCTATCTATATATGCAATGTCGGC 59.014 40.000 0.00 0.00 0.00 5.54
711 725 5.432680 AGTACTAGTACCAGCACTGTAGA 57.567 43.478 25.97 0.00 36.75 2.59
712 726 6.347696 AGTAGTACTAGTACCAGCACTGTAG 58.652 44.000 25.97 0.00 36.75 2.74
713 727 6.305272 AGTAGTACTAGTACCAGCACTGTA 57.695 41.667 25.97 9.32 36.75 2.74
753 767 1.372087 CGACTGCTTGATTGCTCCCC 61.372 60.000 0.00 0.00 0.00 4.81
857 883 1.028905 CTTGTTCGTTTCCTTGGGCA 58.971 50.000 0.00 0.00 0.00 5.36
906 937 0.033405 AGCAGGAGGGAGTAGCGTTA 60.033 55.000 0.00 0.00 0.00 3.18
946 982 1.202428 GCGCTAACTAACAGGGGAGAG 60.202 57.143 0.00 0.00 0.00 3.20
986 1022 2.601702 ATCATGCCCACGACCACCA 61.602 57.895 0.00 0.00 0.00 4.17
1134 1189 1.677942 TGCAGAACATGTTGCACTCA 58.322 45.000 18.92 6.36 44.72 3.41
1305 1368 3.157087 AGGGATCATTCAAAACGCAACT 58.843 40.909 0.00 0.00 0.00 3.16
1332 1395 1.625818 GGCCAAGAAACAGAGGAGAGA 59.374 52.381 0.00 0.00 0.00 3.10
1412 1475 2.361357 AGGACGTCCTCCACCTCG 60.361 66.667 31.69 0.00 44.77 4.63
1624 1687 1.423161 AGCAGAGCAGAAAAGAAGGGT 59.577 47.619 0.00 0.00 0.00 4.34
1625 1688 2.083002 GAGCAGAGCAGAAAAGAAGGG 58.917 52.381 0.00 0.00 0.00 3.95
1626 1689 2.743126 CAGAGCAGAGCAGAAAAGAAGG 59.257 50.000 0.00 0.00 0.00 3.46
1627 1690 2.160022 GCAGAGCAGAGCAGAAAAGAAG 59.840 50.000 0.00 0.00 0.00 2.85
1628 1691 2.149578 GCAGAGCAGAGCAGAAAAGAA 58.850 47.619 0.00 0.00 0.00 2.52
1629 1692 1.347050 AGCAGAGCAGAGCAGAAAAGA 59.653 47.619 0.00 0.00 0.00 2.52
1630 1693 1.733360 GAGCAGAGCAGAGCAGAAAAG 59.267 52.381 0.00 0.00 0.00 2.27
1631 1694 1.805869 GAGCAGAGCAGAGCAGAAAA 58.194 50.000 0.00 0.00 0.00 2.29
1632 1695 0.389556 CGAGCAGAGCAGAGCAGAAA 60.390 55.000 0.00 0.00 0.00 2.52
1633 1696 1.214853 CGAGCAGAGCAGAGCAGAA 59.785 57.895 0.00 0.00 0.00 3.02
1637 1700 2.583045 GAGCGAGCAGAGCAGAGC 60.583 66.667 0.00 0.00 37.01 4.09
1638 1701 0.802994 CTTGAGCGAGCAGAGCAGAG 60.803 60.000 0.00 0.00 37.01 3.35
1649 1712 6.381481 AATCATGCAATTTATCTTGAGCGA 57.619 33.333 0.00 0.00 0.00 4.93
1776 1848 0.099259 CCACCAACTGCATGCGTATG 59.901 55.000 14.09 9.36 37.36 2.39
1777 1849 0.035534 TCCACCAACTGCATGCGTAT 60.036 50.000 14.09 0.00 0.00 3.06
1778 1850 0.953471 GTCCACCAACTGCATGCGTA 60.953 55.000 14.09 0.00 0.00 4.42
2027 2099 0.620556 GTGCTCTTCCTTCCCATGGA 59.379 55.000 15.22 0.00 0.00 3.41
2064 2136 3.570125 TCTTGATATGTGAGGAGTAGGCG 59.430 47.826 0.00 0.00 0.00 5.52
2065 2137 5.537300 TTCTTGATATGTGAGGAGTAGGC 57.463 43.478 0.00 0.00 0.00 3.93
2219 2306 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2220 2307 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2221 2308 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2222 2309 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2223 2310 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2224 2311 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2225 2312 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
2226 2313 4.280677 GGAGAGAGAGAGAGAGAGAGAGAG 59.719 54.167 0.00 0.00 0.00 3.20
2227 2314 4.078922 AGGAGAGAGAGAGAGAGAGAGAGA 60.079 50.000 0.00 0.00 0.00 3.10
2228 2315 4.222336 AGGAGAGAGAGAGAGAGAGAGAG 58.778 52.174 0.00 0.00 0.00 3.20
2229 2316 4.219115 GAGGAGAGAGAGAGAGAGAGAGA 58.781 52.174 0.00 0.00 0.00 3.10
2230 2317 3.323403 GGAGGAGAGAGAGAGAGAGAGAG 59.677 56.522 0.00 0.00 0.00 3.20
2231 2318 3.309296 GGAGGAGAGAGAGAGAGAGAGA 58.691 54.545 0.00 0.00 0.00 3.10
2232 2319 2.370189 GGGAGGAGAGAGAGAGAGAGAG 59.630 59.091 0.00 0.00 0.00 3.20
2233 2320 2.293519 TGGGAGGAGAGAGAGAGAGAGA 60.294 54.545 0.00 0.00 0.00 3.10
2234 2321 2.126882 TGGGAGGAGAGAGAGAGAGAG 58.873 57.143 0.00 0.00 0.00 3.20
2235 2322 2.278657 TGGGAGGAGAGAGAGAGAGA 57.721 55.000 0.00 0.00 0.00 3.10
2236 2323 2.713167 AGATGGGAGGAGAGAGAGAGAG 59.287 54.545 0.00 0.00 0.00 3.20
2237 2324 2.711009 GAGATGGGAGGAGAGAGAGAGA 59.289 54.545 0.00 0.00 0.00 3.10
2238 2325 2.442878 TGAGATGGGAGGAGAGAGAGAG 59.557 54.545 0.00 0.00 0.00 3.20
2239 2326 2.174639 GTGAGATGGGAGGAGAGAGAGA 59.825 54.545 0.00 0.00 0.00 3.10
2240 2327 2.586425 GTGAGATGGGAGGAGAGAGAG 58.414 57.143 0.00 0.00 0.00 3.20
2241 2328 1.216678 GGTGAGATGGGAGGAGAGAGA 59.783 57.143 0.00 0.00 0.00 3.10
2242 2329 1.063341 TGGTGAGATGGGAGGAGAGAG 60.063 57.143 0.00 0.00 0.00 3.20
2243 2330 1.010795 TGGTGAGATGGGAGGAGAGA 58.989 55.000 0.00 0.00 0.00 3.10
2244 2331 2.100128 ATGGTGAGATGGGAGGAGAG 57.900 55.000 0.00 0.00 0.00 3.20
2245 2332 2.426414 GGTATGGTGAGATGGGAGGAGA 60.426 54.545 0.00 0.00 0.00 3.71
2246 2333 1.974236 GGTATGGTGAGATGGGAGGAG 59.026 57.143 0.00 0.00 0.00 3.69
2247 2334 1.293763 TGGTATGGTGAGATGGGAGGA 59.706 52.381 0.00 0.00 0.00 3.71
2248 2335 1.806496 TGGTATGGTGAGATGGGAGG 58.194 55.000 0.00 0.00 0.00 4.30
2310 2397 6.183360 CCATCAGAAAAATGCTTCTAGGACTG 60.183 42.308 0.00 0.00 33.81 3.51
2349 2438 8.455598 TTGCTGTTAATTAAGCGGTATTTTTC 57.544 30.769 0.00 0.00 42.54 2.29
2437 2526 1.210967 TCACAACGGAAAAGAGGGTGT 59.789 47.619 0.00 0.00 0.00 4.16
2709 2798 4.673375 AGGGCAGGCCAGCAACAG 62.673 66.667 22.80 0.00 37.98 3.16
2877 2983 1.283613 ACAATCCGGGCTGATTAACCA 59.716 47.619 0.00 0.00 33.27 3.67
2880 2986 5.931294 TGTAATACAATCCGGGCTGATTAA 58.069 37.500 0.00 0.00 33.27 1.40
2882 2988 4.431416 TGTAATACAATCCGGGCTGATT 57.569 40.909 0.00 4.51 35.36 2.57
2883 2989 4.326826 CATGTAATACAATCCGGGCTGAT 58.673 43.478 0.00 0.00 0.00 2.90
2885 2991 2.226437 GCATGTAATACAATCCGGGCTG 59.774 50.000 0.00 1.18 0.00 4.85
2886 2992 2.106511 AGCATGTAATACAATCCGGGCT 59.893 45.455 0.00 0.00 0.00 5.19
2887 2993 2.504367 AGCATGTAATACAATCCGGGC 58.496 47.619 0.00 0.00 0.00 6.13
2888 2994 4.094887 GCATAGCATGTAATACAATCCGGG 59.905 45.833 0.00 0.00 0.00 5.73
2889 2995 4.937620 AGCATAGCATGTAATACAATCCGG 59.062 41.667 0.00 0.00 0.00 5.14
2890 2996 7.595311 TTAGCATAGCATGTAATACAATCCG 57.405 36.000 0.00 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.