Multiple sequence alignment - TraesCS7A01G280400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G280400 chr7A 100.000 4699 0 0 1 4699 299535892 299531194 0.000000e+00 8678.0
1 TraesCS7A01G280400 chr7A 99.436 532 3 0 1 532 31002979 31003510 0.000000e+00 966.0
2 TraesCS7A01G280400 chr7A 92.362 563 42 1 3401 3962 600914958 600914396 0.000000e+00 800.0
3 TraesCS7A01G280400 chr3D 96.717 4173 95 15 559 4699 304403737 304399575 0.000000e+00 6909.0
4 TraesCS7A01G280400 chr3D 84.941 591 74 7 966 1548 406692765 406692182 6.780000e-163 584.0
5 TraesCS7A01G280400 chr2B 94.903 2276 73 8 1474 3721 787813005 787810745 0.000000e+00 3520.0
6 TraesCS7A01G280400 chr2B 93.096 1796 81 14 2922 4693 289174370 289176146 0.000000e+00 2590.0
7 TraesCS7A01G280400 chr2B 94.583 1126 38 2 1780 2895 289173262 289174374 0.000000e+00 1720.0
8 TraesCS7A01G280400 chr2B 92.910 1072 69 5 667 1734 289172195 289173263 0.000000e+00 1552.0
9 TraesCS7A01G280400 chr2B 88.862 835 51 8 568 1401 787813910 787813117 0.000000e+00 989.0
10 TraesCS7A01G280400 chr2B 88.974 653 46 11 2128 2767 114324763 114324124 0.000000e+00 784.0
11 TraesCS7A01G280400 chr7B 91.267 2107 147 12 1314 3402 555324263 555322176 0.000000e+00 2837.0
12 TraesCS7A01G280400 chr7B 83.092 1035 108 29 958 1972 272695997 272695010 0.000000e+00 880.0
13 TraesCS7A01G280400 chr7B 85.643 801 80 10 2614 3405 272694836 272694062 0.000000e+00 809.0
14 TraesCS7A01G280400 chr7B 90.130 537 29 13 16 531 721814143 721814676 0.000000e+00 676.0
15 TraesCS7A01G280400 chr7B 87.260 416 41 8 3939 4342 272693448 272693033 9.210000e-127 464.0
16 TraesCS7A01G280400 chr7B 86.818 220 18 6 4200 4418 468948228 468948437 7.860000e-58 235.0
17 TraesCS7A01G280400 chr7B 89.617 183 18 1 1084 1266 555405109 555404928 1.020000e-56 231.0
18 TraesCS7A01G280400 chr7B 80.233 344 36 16 633 956 600454657 600454988 3.660000e-56 230.0
19 TraesCS7A01G280400 chr7B 88.950 181 18 2 1086 1266 555324441 555324263 6.120000e-54 222.0
20 TraesCS7A01G280400 chr1A 96.148 1272 31 5 3444 4699 267347958 267346689 0.000000e+00 2061.0
21 TraesCS7A01G280400 chr1A 94.886 1232 45 3 3444 4657 272010405 272011636 0.000000e+00 1910.0
22 TraesCS7A01G280400 chr1A 92.488 852 44 9 599 1449 267352775 267351943 0.000000e+00 1201.0
23 TraesCS7A01G280400 chr1A 96.434 645 11 6 1957 2591 267348593 267347951 0.000000e+00 1053.0
24 TraesCS7A01G280400 chr1A 95.504 645 18 2 1957 2591 272009769 272010412 0.000000e+00 1020.0
25 TraesCS7A01G280400 chr1A 94.462 650 22 6 1263 1906 272009129 272009770 0.000000e+00 989.0
26 TraesCS7A01G280400 chr1A 91.152 712 57 5 559 1270 272003714 272004419 0.000000e+00 961.0
27 TraesCS7A01G280400 chr1A 87.234 799 71 8 2614 3405 554812777 554812003 0.000000e+00 881.0
28 TraesCS7A01G280400 chr1A 87.822 427 39 5 1547 1972 554813365 554812951 5.470000e-134 488.0
29 TraesCS7A01G280400 chr1A 96.797 281 6 3 1439 1719 267349306 267349029 2.560000e-127 466.0
30 TraesCS7A01G280400 chr1A 98.726 157 2 0 1750 1906 267348748 267348592 3.580000e-71 279.0
31 TraesCS7A01G280400 chr5A 93.569 1275 53 13 3444 4699 186993165 186991901 0.000000e+00 1873.0
32 TraesCS7A01G280400 chr5A 91.667 744 50 7 3471 4204 188273221 188272480 0.000000e+00 1020.0
33 TraesCS7A01G280400 chr5A 95.039 645 22 5 1957 2591 186993802 186993158 0.000000e+00 1005.0
34 TraesCS7A01G280400 chr5A 92.642 598 23 4 1327 1906 186994395 186993801 0.000000e+00 841.0
35 TraesCS7A01G280400 chr6A 99.812 532 1 0 1 532 389563801 389563270 0.000000e+00 977.0
36 TraesCS7A01G280400 chr4A 99.064 534 2 3 1 531 99001273 99000740 0.000000e+00 955.0
37 TraesCS7A01G280400 chr4A 86.324 797 76 9 2614 3401 290583501 290584273 0.000000e+00 837.0
38 TraesCS7A01G280400 chr2A 86.284 802 76 21 2614 3405 348989969 348989192 0.000000e+00 841.0
39 TraesCS7A01G280400 chr2A 82.212 1040 114 26 957 1972 348991135 348990143 0.000000e+00 830.0
40 TraesCS7A01G280400 chr2A 92.143 560 43 1 3401 3959 256191012 256191571 0.000000e+00 789.0
41 TraesCS7A01G280400 chr2A 90.761 552 25 14 1 531 11795846 11796392 0.000000e+00 713.0
42 TraesCS7A01G280400 chr2A 87.476 519 55 4 3981 4489 348988542 348988024 1.460000e-164 590.0
43 TraesCS7A01G280400 chr2A 87.345 403 32 8 2372 2768 74146239 74145850 1.200000e-120 444.0
44 TraesCS7A01G280400 chr2A 89.552 201 13 4 2182 2374 74146562 74146362 1.010000e-61 248.0
45 TraesCS7A01G280400 chr2D 88.515 653 48 11 2129 2768 74976824 74976186 0.000000e+00 765.0
46 TraesCS7A01G280400 chr5D 85.433 762 76 15 3939 4689 478525722 478524985 0.000000e+00 760.0
47 TraesCS7A01G280400 chr5D 85.471 647 83 6 2772 3408 260432119 260431474 0.000000e+00 664.0
48 TraesCS7A01G280400 chr4B 84.605 760 83 15 3939 4688 250745890 250745155 0.000000e+00 725.0
49 TraesCS7A01G280400 chr4B 86.242 487 47 9 62 529 554315949 554316434 1.170000e-140 510.0
50 TraesCS7A01G280400 chr4B 95.238 42 2 0 1 42 554315922 554315963 3.030000e-07 67.6
51 TraesCS7A01G280400 chr3B 90.545 550 27 10 1 531 43595047 43594504 0.000000e+00 704.0
52 TraesCS7A01G280400 chr3B 84.127 315 39 2 227 530 612312694 612313008 1.280000e-75 294.0
53 TraesCS7A01G280400 chr1B 89.318 337 34 2 129 465 266946078 266945744 5.620000e-114 422.0
54 TraesCS7A01G280400 chr1B 100.000 35 0 0 1 35 266946305 266946271 1.090000e-06 65.8
55 TraesCS7A01G280400 chr5B 85.531 311 36 1 230 531 640276355 640276045 2.730000e-82 316.0
56 TraesCS7A01G280400 chr5B 78.171 339 50 20 633 956 23326500 23326829 1.330000e-45 195.0
57 TraesCS7A01G280400 chr5B 81.915 188 15 9 65 233 640276582 640276395 1.760000e-29 141.0
58 TraesCS7A01G280400 chrUn 82.418 273 37 6 4356 4627 22425355 22425093 1.320000e-55 228.0
59 TraesCS7A01G280400 chr3A 80.062 321 29 19 670 959 67435192 67434876 6.160000e-49 206.0
60 TraesCS7A01G280400 chr3A 81.383 188 16 9 65 233 609988802 609988615 8.200000e-28 135.0
61 TraesCS7A01G280400 chr6B 81.923 260 23 13 720 959 89049602 89049347 1.030000e-46 198.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G280400 chr7A 299531194 299535892 4698 True 8678.000000 8678 100.000000 1 4699 1 chr7A.!!$R1 4698
1 TraesCS7A01G280400 chr7A 31002979 31003510 531 False 966.000000 966 99.436000 1 532 1 chr7A.!!$F1 531
2 TraesCS7A01G280400 chr7A 600914396 600914958 562 True 800.000000 800 92.362000 3401 3962 1 chr7A.!!$R2 561
3 TraesCS7A01G280400 chr3D 304399575 304403737 4162 True 6909.000000 6909 96.717000 559 4699 1 chr3D.!!$R1 4140
4 TraesCS7A01G280400 chr3D 406692182 406692765 583 True 584.000000 584 84.941000 966 1548 1 chr3D.!!$R2 582
5 TraesCS7A01G280400 chr2B 787810745 787813910 3165 True 2254.500000 3520 91.882500 568 3721 2 chr2B.!!$R2 3153
6 TraesCS7A01G280400 chr2B 289172195 289176146 3951 False 1954.000000 2590 93.529667 667 4693 3 chr2B.!!$F1 4026
7 TraesCS7A01G280400 chr2B 114324124 114324763 639 True 784.000000 784 88.974000 2128 2767 1 chr2B.!!$R1 639
8 TraesCS7A01G280400 chr7B 555322176 555324441 2265 True 1529.500000 2837 90.108500 1086 3402 2 chr7B.!!$R3 2316
9 TraesCS7A01G280400 chr7B 272693033 272695997 2964 True 717.666667 880 85.331667 958 4342 3 chr7B.!!$R2 3384
10 TraesCS7A01G280400 chr7B 721814143 721814676 533 False 676.000000 676 90.130000 16 531 1 chr7B.!!$F3 515
11 TraesCS7A01G280400 chr1A 272009129 272011636 2507 False 1306.333333 1910 94.950667 1263 4657 3 chr1A.!!$F2 3394
12 TraesCS7A01G280400 chr1A 267346689 267352775 6086 True 1012.000000 2061 96.118600 599 4699 5 chr1A.!!$R1 4100
13 TraesCS7A01G280400 chr1A 272003714 272004419 705 False 961.000000 961 91.152000 559 1270 1 chr1A.!!$F1 711
14 TraesCS7A01G280400 chr1A 554812003 554813365 1362 True 684.500000 881 87.528000 1547 3405 2 chr1A.!!$R2 1858
15 TraesCS7A01G280400 chr5A 186991901 186994395 2494 True 1239.666667 1873 93.750000 1327 4699 3 chr5A.!!$R2 3372
16 TraesCS7A01G280400 chr5A 188272480 188273221 741 True 1020.000000 1020 91.667000 3471 4204 1 chr5A.!!$R1 733
17 TraesCS7A01G280400 chr6A 389563270 389563801 531 True 977.000000 977 99.812000 1 532 1 chr6A.!!$R1 531
18 TraesCS7A01G280400 chr4A 99000740 99001273 533 True 955.000000 955 99.064000 1 531 1 chr4A.!!$R1 530
19 TraesCS7A01G280400 chr4A 290583501 290584273 772 False 837.000000 837 86.324000 2614 3401 1 chr4A.!!$F1 787
20 TraesCS7A01G280400 chr2A 256191012 256191571 559 False 789.000000 789 92.143000 3401 3959 1 chr2A.!!$F2 558
21 TraesCS7A01G280400 chr2A 348988024 348991135 3111 True 753.666667 841 85.324000 957 4489 3 chr2A.!!$R2 3532
22 TraesCS7A01G280400 chr2A 11795846 11796392 546 False 713.000000 713 90.761000 1 531 1 chr2A.!!$F1 530
23 TraesCS7A01G280400 chr2A 74145850 74146562 712 True 346.000000 444 88.448500 2182 2768 2 chr2A.!!$R1 586
24 TraesCS7A01G280400 chr2D 74976186 74976824 638 True 765.000000 765 88.515000 2129 2768 1 chr2D.!!$R1 639
25 TraesCS7A01G280400 chr5D 478524985 478525722 737 True 760.000000 760 85.433000 3939 4689 1 chr5D.!!$R2 750
26 TraesCS7A01G280400 chr5D 260431474 260432119 645 True 664.000000 664 85.471000 2772 3408 1 chr5D.!!$R1 636
27 TraesCS7A01G280400 chr4B 250745155 250745890 735 True 725.000000 725 84.605000 3939 4688 1 chr4B.!!$R1 749
28 TraesCS7A01G280400 chr4B 554315922 554316434 512 False 288.800000 510 90.740000 1 529 2 chr4B.!!$F1 528
29 TraesCS7A01G280400 chr3B 43594504 43595047 543 True 704.000000 704 90.545000 1 531 1 chr3B.!!$R1 530
30 TraesCS7A01G280400 chr1B 266945744 266946305 561 True 243.900000 422 94.659000 1 465 2 chr1B.!!$R1 464
31 TraesCS7A01G280400 chr5B 640276045 640276582 537 True 228.500000 316 83.723000 65 531 2 chr5B.!!$R1 466

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
359 549 1.209504 CGGTGGGTACTGGATGTGATT 59.790 52.381 0.00 0.00 0.00 2.57 F
1128 1366 0.179936 GGGCTCCTCCATCACTTCTG 59.820 60.000 0.00 0.00 36.21 3.02 F
1212 1451 0.679960 GGTTTCAGGCCGTGGCTTAT 60.680 55.000 11.25 0.00 41.60 1.73 F
1601 4503 0.899720 ATGGCTTGCAAATCCAGGTG 59.100 50.000 20.49 0.74 46.49 4.00 F
3241 6668 1.785041 CGGGGTGTGTCTTGTGCTTG 61.785 60.000 0.00 0.00 0.00 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1212 1451 0.105709 TGGATATGGAGAGGCGACCA 60.106 55.000 0.00 0.0 40.57 4.02 R
2496 5889 1.068610 CGGCCGAAATGCAAAGAGAAA 60.069 47.619 24.07 0.0 0.00 2.52 R
3241 6668 2.095718 GGAGCTCGTGGTGTCAAAAATC 60.096 50.000 7.83 0.0 0.00 2.17 R
3298 6725 3.411454 TCTCCCTTCTGACCATCTCAT 57.589 47.619 0.00 0.0 0.00 2.90 R
4387 7920 0.471591 AGCAAGCCACCAATTTCCCA 60.472 50.000 0.00 0.0 0.00 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
359 549 1.209504 CGGTGGGTACTGGATGTGATT 59.790 52.381 0.00 0.00 0.00 2.57
560 760 8.977267 TCTACCTCTCTACTTACTAACAATCC 57.023 38.462 0.00 0.00 0.00 3.01
561 761 8.780003 TCTACCTCTCTACTTACTAACAATCCT 58.220 37.037 0.00 0.00 0.00 3.24
562 762 7.885009 ACCTCTCTACTTACTAACAATCCTC 57.115 40.000 0.00 0.00 0.00 3.71
563 763 6.834969 ACCTCTCTACTTACTAACAATCCTCC 59.165 42.308 0.00 0.00 0.00 4.30
586 786 4.156008 CCTGTTTCTGAGAAATTAACCCGG 59.844 45.833 11.20 0.00 0.00 5.73
605 805 5.128335 ACCCGGAGTCCAGTAAATAAGTTAG 59.872 44.000 10.49 0.00 0.00 2.34
878 1079 2.126149 CTCAGCACGCTTCTCGCT 60.126 61.111 0.00 0.00 43.23 4.93
883 1084 2.816958 CACGCTTCTCGCTGCCAT 60.817 61.111 0.00 0.00 43.23 4.40
1065 1272 3.940506 CTCCGGAGTCCCACGTCCT 62.941 68.421 24.04 0.00 0.00 3.85
1120 1358 2.835431 CTCGACGGGCTCCTCCAT 60.835 66.667 0.00 0.00 36.21 3.41
1121 1359 2.833582 TCGACGGGCTCCTCCATC 60.834 66.667 0.00 0.00 36.21 3.51
1122 1360 3.147595 CGACGGGCTCCTCCATCA 61.148 66.667 0.00 0.00 36.21 3.07
1123 1361 2.501610 GACGGGCTCCTCCATCAC 59.498 66.667 0.00 0.00 36.21 3.06
1124 1362 2.039624 ACGGGCTCCTCCATCACT 59.960 61.111 0.00 0.00 36.21 3.41
1125 1363 1.613630 ACGGGCTCCTCCATCACTT 60.614 57.895 0.00 0.00 36.21 3.16
1126 1364 1.144936 CGGGCTCCTCCATCACTTC 59.855 63.158 0.00 0.00 36.21 3.01
1127 1365 1.333636 CGGGCTCCTCCATCACTTCT 61.334 60.000 0.00 0.00 36.21 2.85
1128 1366 0.179936 GGGCTCCTCCATCACTTCTG 59.820 60.000 0.00 0.00 36.21 3.02
1129 1367 0.179936 GGCTCCTCCATCACTTCTGG 59.820 60.000 0.00 0.00 34.93 3.86
1130 1368 0.908198 GCTCCTCCATCACTTCTGGT 59.092 55.000 0.00 0.00 35.19 4.00
1131 1369 1.280421 GCTCCTCCATCACTTCTGGTT 59.720 52.381 0.00 0.00 35.19 3.67
1132 1370 2.290577 GCTCCTCCATCACTTCTGGTTT 60.291 50.000 0.00 0.00 35.19 3.27
1133 1371 3.604582 CTCCTCCATCACTTCTGGTTTC 58.395 50.000 0.00 0.00 35.19 2.78
1134 1372 2.978978 TCCTCCATCACTTCTGGTTTCA 59.021 45.455 0.00 0.00 35.19 2.69
1135 1373 3.077359 CCTCCATCACTTCTGGTTTCAC 58.923 50.000 0.00 0.00 35.19 3.18
1136 1374 3.496692 CCTCCATCACTTCTGGTTTCACA 60.497 47.826 0.00 0.00 35.19 3.58
1145 1383 1.955778 TCTGGTTTCACACAATGGCTG 59.044 47.619 0.00 0.00 0.00 4.85
1210 1449 2.597510 GGTTTCAGGCCGTGGCTT 60.598 61.111 11.25 0.00 41.60 4.35
1212 1451 0.679960 GGTTTCAGGCCGTGGCTTAT 60.680 55.000 11.25 0.00 41.60 1.73
1273 1515 2.746359 GAGAGCCTGGCTGTGTGT 59.254 61.111 28.82 0.00 39.88 3.72
1312 1555 1.127567 ATCTGCGCCCTATAAGCCCA 61.128 55.000 4.18 0.00 0.00 5.36
1601 4503 0.899720 ATGGCTTGCAAATCCAGGTG 59.100 50.000 20.49 0.74 46.49 4.00
2230 5483 5.638234 AGTTGAGTTTCTTACTTCGGTATGC 59.362 40.000 0.00 0.00 37.17 3.14
2340 5600 2.916702 ATCAGCATGGTTATCGCAGA 57.083 45.000 0.00 0.00 37.71 4.26
2720 6118 2.760092 ACCAGTTTCGGCGTATACCTTA 59.240 45.455 6.85 0.00 0.00 2.69
3241 6668 1.785041 CGGGGTGTGTCTTGTGCTTG 61.785 60.000 0.00 0.00 0.00 4.01
3298 6725 4.172041 TCCCCTGAGTCATTATAGAGGGAA 59.828 45.833 11.93 0.00 42.58 3.97
3437 6915 6.017605 CCATTCTGTACACCAAGAGATTATGC 60.018 42.308 0.00 0.00 0.00 3.14
4250 7783 6.115448 AGTTACCACATTAAGCTTGAGTCT 57.885 37.500 9.86 0.00 0.00 3.24
4584 8131 5.182950 TCACATAAGGCAACAACATACTTGG 59.817 40.000 0.00 0.00 41.41 3.61
4616 8163 6.126854 TGAGATGAGTTGATCACATCCTCATT 60.127 38.462 19.41 13.05 42.37 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
534 734 9.577222 GGATTGTTAGTAAGTAGAGAGGTAGAT 57.423 37.037 0.00 0.00 0.00 1.98
535 735 8.780003 AGGATTGTTAGTAAGTAGAGAGGTAGA 58.220 37.037 0.00 0.00 0.00 2.59
536 736 8.983702 AGGATTGTTAGTAAGTAGAGAGGTAG 57.016 38.462 0.00 0.00 0.00 3.18
537 737 7.997803 GGAGGATTGTTAGTAAGTAGAGAGGTA 59.002 40.741 0.00 0.00 0.00 3.08
538 738 6.834969 GGAGGATTGTTAGTAAGTAGAGAGGT 59.165 42.308 0.00 0.00 0.00 3.85
539 739 6.265876 GGGAGGATTGTTAGTAAGTAGAGAGG 59.734 46.154 0.00 0.00 0.00 3.69
540 740 7.013846 CAGGGAGGATTGTTAGTAAGTAGAGAG 59.986 44.444 0.00 0.00 0.00 3.20
541 741 6.834451 CAGGGAGGATTGTTAGTAAGTAGAGA 59.166 42.308 0.00 0.00 0.00 3.10
542 742 6.608002 ACAGGGAGGATTGTTAGTAAGTAGAG 59.392 42.308 0.00 0.00 0.00 2.43
543 743 6.500336 ACAGGGAGGATTGTTAGTAAGTAGA 58.500 40.000 0.00 0.00 0.00 2.59
544 744 6.793505 ACAGGGAGGATTGTTAGTAAGTAG 57.206 41.667 0.00 0.00 0.00 2.57
545 745 7.456902 AGAAACAGGGAGGATTGTTAGTAAGTA 59.543 37.037 0.00 0.00 36.56 2.24
546 746 6.272558 AGAAACAGGGAGGATTGTTAGTAAGT 59.727 38.462 0.00 0.00 36.56 2.24
547 747 6.595716 CAGAAACAGGGAGGATTGTTAGTAAG 59.404 42.308 0.00 0.00 36.56 2.34
548 748 6.271391 TCAGAAACAGGGAGGATTGTTAGTAA 59.729 38.462 0.00 0.00 36.56 2.24
549 749 5.783360 TCAGAAACAGGGAGGATTGTTAGTA 59.217 40.000 0.00 0.00 36.56 1.82
550 750 4.597507 TCAGAAACAGGGAGGATTGTTAGT 59.402 41.667 0.00 0.00 36.56 2.24
551 751 5.046304 TCTCAGAAACAGGGAGGATTGTTAG 60.046 44.000 0.00 0.00 36.56 2.34
552 752 4.844085 TCTCAGAAACAGGGAGGATTGTTA 59.156 41.667 0.00 0.00 36.56 2.41
553 753 3.652869 TCTCAGAAACAGGGAGGATTGTT 59.347 43.478 0.00 0.00 39.08 2.83
554 754 3.251484 TCTCAGAAACAGGGAGGATTGT 58.749 45.455 0.00 0.00 0.00 2.71
555 755 3.988976 TCTCAGAAACAGGGAGGATTG 57.011 47.619 0.00 0.00 0.00 2.67
556 756 5.527026 ATTTCTCAGAAACAGGGAGGATT 57.473 39.130 0.68 0.00 0.00 3.01
557 757 5.527026 AATTTCTCAGAAACAGGGAGGAT 57.473 39.130 0.68 0.00 0.00 3.24
558 758 6.238648 GTTAATTTCTCAGAAACAGGGAGGA 58.761 40.000 0.68 0.00 0.00 3.71
559 759 5.416013 GGTTAATTTCTCAGAAACAGGGAGG 59.584 44.000 0.68 0.00 0.00 4.30
560 760 5.416013 GGGTTAATTTCTCAGAAACAGGGAG 59.584 44.000 0.68 0.00 0.00 4.30
561 761 5.321927 GGGTTAATTTCTCAGAAACAGGGA 58.678 41.667 0.68 0.00 0.00 4.20
562 762 4.156008 CGGGTTAATTTCTCAGAAACAGGG 59.844 45.833 0.68 0.00 0.00 4.45
563 763 4.156008 CCGGGTTAATTTCTCAGAAACAGG 59.844 45.833 0.68 0.00 0.00 4.00
1017 1224 1.523938 GCCCTCCATAGCAACGACC 60.524 63.158 0.00 0.00 0.00 4.79
1065 1272 1.476488 TGGCAATCTCGTTGATCTCGA 59.524 47.619 11.58 11.58 40.37 4.04
1120 1358 3.631686 CCATTGTGTGAAACCAGAAGTGA 59.368 43.478 0.00 0.00 34.36 3.41
1121 1359 3.796504 GCCATTGTGTGAAACCAGAAGTG 60.797 47.826 0.00 0.00 34.36 3.16
1122 1360 2.362077 GCCATTGTGTGAAACCAGAAGT 59.638 45.455 0.00 0.00 34.36 3.01
1123 1361 2.624838 AGCCATTGTGTGAAACCAGAAG 59.375 45.455 0.00 0.00 34.36 2.85
1124 1362 2.361757 CAGCCATTGTGTGAAACCAGAA 59.638 45.455 0.00 0.00 34.36 3.02
1125 1363 1.955778 CAGCCATTGTGTGAAACCAGA 59.044 47.619 0.00 0.00 34.36 3.86
1126 1364 1.682854 ACAGCCATTGTGTGAAACCAG 59.317 47.619 0.00 0.00 38.99 4.00
1127 1365 1.774110 ACAGCCATTGTGTGAAACCA 58.226 45.000 0.00 0.00 38.99 3.67
1136 1374 2.993264 GCAGCCCACAGCCATTGT 60.993 61.111 0.00 0.00 45.47 2.71
1212 1451 0.105709 TGGATATGGAGAGGCGACCA 60.106 55.000 0.00 0.00 40.57 4.02
1478 4376 7.559335 AATCCTATATGAAGATGTACAGGCA 57.441 36.000 0.33 0.00 0.00 4.75
1975 5214 1.485066 AGGGGATGGTAATGACGTCAC 59.515 52.381 22.71 8.79 0.00 3.67
2230 5483 3.660959 TGGAACTTACTATACCCCAGGG 58.339 50.000 0.00 0.00 42.03 4.45
2340 5600 8.964772 GCTTATGATATTTGCCCTGATTATCTT 58.035 33.333 0.00 0.00 0.00 2.40
2496 5889 1.068610 CGGCCGAAATGCAAAGAGAAA 60.069 47.619 24.07 0.00 0.00 2.52
3241 6668 2.095718 GGAGCTCGTGGTGTCAAAAATC 60.096 50.000 7.83 0.00 0.00 2.17
3298 6725 3.411454 TCTCCCTTCTGACCATCTCAT 57.589 47.619 0.00 0.00 0.00 2.90
3976 7496 4.793071 TGTTTGCAATCCTAATGAACGTG 58.207 39.130 0.00 0.00 0.00 4.49
4387 7920 0.471591 AGCAAGCCACCAATTTCCCA 60.472 50.000 0.00 0.00 0.00 4.37
4485 8021 8.081633 CACAAACAGAAATTCCAGTTATGCTAA 58.918 33.333 2.57 0.00 0.00 3.09
4531 8068 1.142748 GGAGCTGTCCCATCAGACG 59.857 63.158 0.00 0.00 39.77 4.18
4584 8131 5.108517 GTGATCAACTCATCTCAACTCCTC 58.891 45.833 0.00 0.00 35.97 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.