Multiple sequence alignment - TraesCS7A01G279600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G279600 chr7A 100.000 2558 0 0 1 2558 299026680 299029237 0.000000e+00 4724.0
1 TraesCS7A01G279600 chr7A 84.283 579 47 15 1856 2396 17043280 17042708 2.250000e-145 525.0
2 TraesCS7A01G279600 chr7A 92.880 309 19 2 2096 2404 677530053 677530358 1.810000e-121 446.0
3 TraesCS7A01G279600 chr7A 86.582 395 42 4 1664 2057 677529672 677530056 2.350000e-115 425.0
4 TraesCS7A01G279600 chr7A 81.890 254 40 5 1680 1930 372219329 372219079 2.580000e-50 209.0
5 TraesCS7A01G279600 chr7A 85.965 171 15 5 2234 2404 347858447 347858608 9.410000e-40 174.0
6 TraesCS7A01G279600 chr7A 88.618 123 7 5 1663 1783 17043397 17043280 2.650000e-30 143.0
7 TraesCS7A01G279600 chr7A 93.333 90 4 1 539 626 342058258 342058347 5.740000e-27 132.0
8 TraesCS7A01G279600 chr7A 91.398 93 6 2 532 623 305161726 305161817 2.670000e-25 126.0
9 TraesCS7A01G279600 chr2A 98.028 507 9 1 1 507 166435171 166434666 0.000000e+00 880.0
10 TraesCS7A01G279600 chr2A 93.712 493 29 1 3 495 626154238 626154728 0.000000e+00 737.0
11 TraesCS7A01G279600 chr2A 93.478 92 6 0 532 623 416910672 416910581 1.230000e-28 137.0
12 TraesCS7A01G279600 chr3D 90.691 666 52 6 1742 2404 222071980 222071322 0.000000e+00 878.0
13 TraesCS7A01G279600 chr3D 80.494 405 48 5 663 1038 222072470 222072068 5.390000e-72 281.0
14 TraesCS7A01G279600 chr3D 91.176 68 6 0 1863 1930 213199169 213199102 2.710000e-15 93.5
15 TraesCS7A01G279600 chr1A 88.172 744 66 10 1663 2404 111769679 111768956 0.000000e+00 867.0
16 TraesCS7A01G279600 chr1A 90.635 630 50 5 1037 1664 488187508 488188130 0.000000e+00 828.0
17 TraesCS7A01G279600 chr1A 92.632 95 3 3 532 622 37751643 37751549 1.600000e-27 134.0
18 TraesCS7A01G279600 chr1A 90.526 95 5 2 535 625 579362033 579361939 3.460000e-24 122.0
19 TraesCS7A01G279600 chr1D 91.534 626 51 2 1037 1661 389797230 389797854 0.000000e+00 861.0
20 TraesCS7A01G279600 chr1D 90.240 625 55 1 1037 1661 389429142 389428524 0.000000e+00 811.0
21 TraesCS7A01G279600 chr1D 93.712 493 25 4 3 495 26199554 26200040 0.000000e+00 734.0
22 TraesCS7A01G279600 chr2B 97.228 505 12 2 1 504 794603172 794603675 0.000000e+00 854.0
23 TraesCS7A01G279600 chr6B 96.252 507 18 1 1 507 551734861 551734356 0.000000e+00 830.0
24 TraesCS7A01G279600 chr3A 86.230 748 65 22 1663 2404 677747553 677746838 0.000000e+00 776.0
25 TraesCS7A01G279600 chr3A 90.323 62 6 0 1863 1924 712566442 712566503 5.870000e-12 82.4
26 TraesCS7A01G279600 chr5D 94.118 493 23 4 3 495 333317209 333316723 0.000000e+00 745.0
27 TraesCS7A01G279600 chr5D 84.940 332 25 13 2077 2404 320390602 320390292 1.910000e-81 313.0
28 TraesCS7A01G279600 chr3B 93.712 493 28 3 3 495 748736326 748735837 0.000000e+00 736.0
29 TraesCS7A01G279600 chr2D 93.712 493 25 4 3 495 451878758 451879244 0.000000e+00 734.0
30 TraesCS7A01G279600 chr2D 93.712 493 25 4 3 495 648675602 648676088 0.000000e+00 734.0
31 TraesCS7A01G279600 chr2D 81.395 86 10 5 585 664 630831155 630831070 5.910000e-07 65.8
32 TraesCS7A01G279600 chr1B 90.927 518 44 1 1147 1661 522754995 522755512 0.000000e+00 693.0
33 TraesCS7A01G279600 chr7D 82.964 587 51 17 1660 2204 393128378 393128957 3.830000e-133 484.0
34 TraesCS7A01G279600 chr7D 84.679 483 48 10 1926 2404 463154581 463155041 2.320000e-125 459.0
35 TraesCS7A01G279600 chr6D 96.629 89 2 1 538 626 367030161 367030074 2.050000e-31 147.0
36 TraesCS7A01G279600 chr6D 97.222 36 1 0 759 794 208808672 208808707 7.640000e-06 62.1
37 TraesCS7A01G279600 chr5A 95.181 83 4 0 542 624 109672567 109672649 5.740000e-27 132.0
38 TraesCS7A01G279600 chr4B 91.579 95 7 1 532 625 97097986 97097892 2.070000e-26 130.0
39 TraesCS7A01G279600 chr7B 91.011 89 4 2 540 625 248699891 248699978 1.610000e-22 117.0
40 TraesCS7A01G279600 chr6A 82.836 134 19 4 1677 1808 206090601 206090732 1.610000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G279600 chr7A 299026680 299029237 2557 False 4724.0 4724 100.0000 1 2558 1 chr7A.!!$F1 2557
1 TraesCS7A01G279600 chr7A 677529672 677530358 686 False 435.5 446 89.7310 1664 2404 2 chr7A.!!$F5 740
2 TraesCS7A01G279600 chr7A 17042708 17043397 689 True 334.0 525 86.4505 1663 2396 2 chr7A.!!$R2 733
3 TraesCS7A01G279600 chr2A 166434666 166435171 505 True 880.0 880 98.0280 1 507 1 chr2A.!!$R1 506
4 TraesCS7A01G279600 chr3D 222071322 222072470 1148 True 579.5 878 85.5925 663 2404 2 chr3D.!!$R2 1741
5 TraesCS7A01G279600 chr1A 111768956 111769679 723 True 867.0 867 88.1720 1663 2404 1 chr1A.!!$R2 741
6 TraesCS7A01G279600 chr1A 488187508 488188130 622 False 828.0 828 90.6350 1037 1664 1 chr1A.!!$F1 627
7 TraesCS7A01G279600 chr1D 389797230 389797854 624 False 861.0 861 91.5340 1037 1661 1 chr1D.!!$F2 624
8 TraesCS7A01G279600 chr1D 389428524 389429142 618 True 811.0 811 90.2400 1037 1661 1 chr1D.!!$R1 624
9 TraesCS7A01G279600 chr2B 794603172 794603675 503 False 854.0 854 97.2280 1 504 1 chr2B.!!$F1 503
10 TraesCS7A01G279600 chr6B 551734356 551734861 505 True 830.0 830 96.2520 1 507 1 chr6B.!!$R1 506
11 TraesCS7A01G279600 chr3A 677746838 677747553 715 True 776.0 776 86.2300 1663 2404 1 chr3A.!!$R1 741
12 TraesCS7A01G279600 chr1B 522754995 522755512 517 False 693.0 693 90.9270 1147 1661 1 chr1B.!!$F1 514
13 TraesCS7A01G279600 chr7D 393128378 393128957 579 False 484.0 484 82.9640 1660 2204 1 chr7D.!!$F1 544

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
650 653 0.249073 CGTTTCTGAGATCCCGCGAT 60.249 55.0 8.23 0.0 0.0 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1559 1594 0.679505 TTCACCACTTCCAGGACTCG 59.32 55.0 0.0 0.0 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
504 507 2.909662 TCCTGTGACATACCAACCATGA 59.090 45.455 0.00 0.00 0.00 3.07
507 510 4.096833 CCTGTGACATACCAACCATGATTG 59.903 45.833 0.00 0.00 0.00 2.67
508 511 4.916183 TGTGACATACCAACCATGATTGA 58.084 39.130 0.00 0.00 0.00 2.57
509 512 4.699735 TGTGACATACCAACCATGATTGAC 59.300 41.667 0.00 0.00 0.00 3.18
510 513 4.699735 GTGACATACCAACCATGATTGACA 59.300 41.667 0.00 0.00 0.00 3.58
511 514 5.357878 GTGACATACCAACCATGATTGACAT 59.642 40.000 0.00 0.00 40.17 3.06
512 515 5.951148 TGACATACCAACCATGATTGACATT 59.049 36.000 0.00 0.00 37.07 2.71
513 516 6.436847 TGACATACCAACCATGATTGACATTT 59.563 34.615 0.00 0.00 37.07 2.32
514 517 6.632909 ACATACCAACCATGATTGACATTTG 58.367 36.000 0.00 0.00 37.07 2.32
515 518 6.211184 ACATACCAACCATGATTGACATTTGT 59.789 34.615 0.00 0.00 37.07 2.83
516 519 4.885413 ACCAACCATGATTGACATTTGTG 58.115 39.130 0.00 0.00 37.07 3.33
517 520 3.680937 CCAACCATGATTGACATTTGTGC 59.319 43.478 0.00 0.00 37.07 4.57
518 521 4.561938 CCAACCATGATTGACATTTGTGCT 60.562 41.667 0.00 0.00 37.07 4.40
519 522 5.336610 CCAACCATGATTGACATTTGTGCTA 60.337 40.000 0.00 0.00 37.07 3.49
520 523 5.571784 ACCATGATTGACATTTGTGCTAG 57.428 39.130 0.00 0.00 37.07 3.42
521 524 5.012239 ACCATGATTGACATTTGTGCTAGT 58.988 37.500 0.00 0.00 37.07 2.57
522 525 5.106038 ACCATGATTGACATTTGTGCTAGTG 60.106 40.000 0.00 0.00 37.07 2.74
523 526 5.106038 CCATGATTGACATTTGTGCTAGTGT 60.106 40.000 0.00 0.00 37.07 3.55
524 527 5.361135 TGATTGACATTTGTGCTAGTGTG 57.639 39.130 0.00 0.00 0.00 3.82
525 528 4.821260 TGATTGACATTTGTGCTAGTGTGT 59.179 37.500 0.00 0.00 0.00 3.72
526 529 4.550577 TTGACATTTGTGCTAGTGTGTG 57.449 40.909 0.00 0.00 0.00 3.82
527 530 3.540617 TGACATTTGTGCTAGTGTGTGT 58.459 40.909 0.00 0.00 0.00 3.72
528 531 3.312146 TGACATTTGTGCTAGTGTGTGTG 59.688 43.478 0.00 0.00 0.00 3.82
529 532 3.278574 ACATTTGTGCTAGTGTGTGTGT 58.721 40.909 0.00 0.00 0.00 3.72
530 533 3.312421 ACATTTGTGCTAGTGTGTGTGTC 59.688 43.478 0.00 0.00 0.00 3.67
531 534 2.979814 TTGTGCTAGTGTGTGTGTCT 57.020 45.000 0.00 0.00 0.00 3.41
532 535 4.394439 TTTGTGCTAGTGTGTGTGTCTA 57.606 40.909 0.00 0.00 0.00 2.59
533 536 4.600692 TTGTGCTAGTGTGTGTGTCTAT 57.399 40.909 0.00 0.00 0.00 1.98
534 537 5.715434 TTGTGCTAGTGTGTGTGTCTATA 57.285 39.130 0.00 0.00 0.00 1.31
535 538 5.914898 TGTGCTAGTGTGTGTGTCTATAT 57.085 39.130 0.00 0.00 0.00 0.86
536 539 7.399245 TTGTGCTAGTGTGTGTGTCTATATA 57.601 36.000 0.00 0.00 0.00 0.86
537 540 6.792326 TGTGCTAGTGTGTGTGTCTATATAC 58.208 40.000 0.00 0.00 0.00 1.47
538 541 6.376018 TGTGCTAGTGTGTGTGTCTATATACA 59.624 38.462 0.00 0.00 0.00 2.29
539 542 7.068226 TGTGCTAGTGTGTGTGTCTATATACAT 59.932 37.037 0.00 0.00 0.00 2.29
540 543 8.565416 GTGCTAGTGTGTGTGTCTATATACATA 58.435 37.037 0.00 0.00 0.00 2.29
541 544 9.297037 TGCTAGTGTGTGTGTCTATATACATAT 57.703 33.333 0.00 0.00 0.00 1.78
598 601 5.982890 ATTGGCATTATTCTAATTCCGGG 57.017 39.130 0.00 0.00 0.00 5.73
599 602 4.715534 TGGCATTATTCTAATTCCGGGA 57.284 40.909 0.00 0.00 0.00 5.14
600 603 5.255397 TGGCATTATTCTAATTCCGGGAT 57.745 39.130 0.00 0.00 0.00 3.85
601 604 5.640147 TGGCATTATTCTAATTCCGGGATT 58.360 37.500 13.82 13.82 0.00 3.01
602 605 6.785076 TGGCATTATTCTAATTCCGGGATTA 58.215 36.000 14.67 14.67 0.00 1.75
603 606 6.884295 TGGCATTATTCTAATTCCGGGATTAG 59.116 38.462 29.95 29.95 39.75 1.73
604 607 7.110155 GGCATTATTCTAATTCCGGGATTAGA 58.890 38.462 32.95 32.95 43.38 2.10
616 619 8.863872 ATTCCGGGATTAGAATAGTTATTTGG 57.136 34.615 0.00 0.00 30.98 3.28
617 620 7.621006 TCCGGGATTAGAATAGTTATTTGGA 57.379 36.000 0.00 0.00 0.00 3.53
618 621 8.214721 TCCGGGATTAGAATAGTTATTTGGAT 57.785 34.615 0.00 0.00 0.00 3.41
619 622 8.319146 TCCGGGATTAGAATAGTTATTTGGATC 58.681 37.037 0.00 0.00 0.00 3.36
620 623 8.100791 CCGGGATTAGAATAGTTATTTGGATCA 58.899 37.037 0.00 0.00 0.00 2.92
621 624 8.936864 CGGGATTAGAATAGTTATTTGGATCAC 58.063 37.037 0.00 0.00 0.00 3.06
622 625 8.936864 GGGATTAGAATAGTTATTTGGATCACG 58.063 37.037 0.00 0.00 0.00 4.35
623 626 8.936864 GGATTAGAATAGTTATTTGGATCACGG 58.063 37.037 0.00 0.00 0.00 4.94
624 627 7.724305 TTAGAATAGTTATTTGGATCACGGC 57.276 36.000 0.00 0.00 0.00 5.68
625 628 5.063880 AGAATAGTTATTTGGATCACGGCC 58.936 41.667 0.00 0.00 0.00 6.13
626 629 1.663695 AGTTATTTGGATCACGGCCG 58.336 50.000 26.86 26.86 0.00 6.13
627 630 1.065709 AGTTATTTGGATCACGGCCGT 60.066 47.619 28.70 28.70 0.00 5.68
628 631 1.329599 GTTATTTGGATCACGGCCGTC 59.670 52.381 31.80 18.48 0.00 4.79
629 632 0.537653 TATTTGGATCACGGCCGTCA 59.462 50.000 31.80 19.53 0.00 4.35
630 633 0.322098 ATTTGGATCACGGCCGTCAA 60.322 50.000 31.80 25.97 0.00 3.18
631 634 1.231958 TTTGGATCACGGCCGTCAAC 61.232 55.000 31.80 16.13 0.00 3.18
632 635 3.186047 GGATCACGGCCGTCAACG 61.186 66.667 31.80 18.24 39.44 4.10
633 636 2.431942 GATCACGGCCGTCAACGT 60.432 61.111 31.80 12.67 45.25 3.99
634 637 2.025418 GATCACGGCCGTCAACGTT 61.025 57.895 31.80 12.55 42.04 3.99
635 638 1.562575 GATCACGGCCGTCAACGTTT 61.563 55.000 31.80 0.00 42.04 3.60
636 639 1.562575 ATCACGGCCGTCAACGTTTC 61.563 55.000 31.80 0.00 42.04 2.78
637 640 2.107546 ACGGCCGTCAACGTTTCT 59.892 55.556 28.70 0.00 40.99 2.52
638 641 2.241880 ACGGCCGTCAACGTTTCTG 61.242 57.895 28.70 0.00 40.99 3.02
639 642 1.952133 CGGCCGTCAACGTTTCTGA 60.952 57.895 19.50 0.00 37.74 3.27
640 643 1.860078 GGCCGTCAACGTTTCTGAG 59.140 57.895 0.00 0.00 37.74 3.35
641 644 0.599204 GGCCGTCAACGTTTCTGAGA 60.599 55.000 0.00 0.00 37.74 3.27
642 645 1.429463 GCCGTCAACGTTTCTGAGAT 58.571 50.000 0.00 0.00 37.74 2.75
643 646 1.390463 GCCGTCAACGTTTCTGAGATC 59.610 52.381 0.00 0.00 37.74 2.75
644 647 1.993370 CCGTCAACGTTTCTGAGATCC 59.007 52.381 0.00 0.00 37.74 3.36
645 648 1.993370 CGTCAACGTTTCTGAGATCCC 59.007 52.381 0.00 0.00 34.11 3.85
646 649 1.993370 GTCAACGTTTCTGAGATCCCG 59.007 52.381 0.00 0.00 0.00 5.14
647 650 0.721718 CAACGTTTCTGAGATCCCGC 59.278 55.000 0.00 0.00 0.00 6.13
648 651 0.736325 AACGTTTCTGAGATCCCGCG 60.736 55.000 0.00 0.00 0.00 6.46
649 652 1.138883 CGTTTCTGAGATCCCGCGA 59.861 57.895 8.23 0.00 0.00 5.87
650 653 0.249073 CGTTTCTGAGATCCCGCGAT 60.249 55.000 8.23 0.00 0.00 4.58
651 654 1.492720 GTTTCTGAGATCCCGCGATC 58.507 55.000 8.23 3.09 44.65 3.69
652 655 0.389391 TTTCTGAGATCCCGCGATCC 59.611 55.000 8.23 0.00 45.32 3.36
653 656 1.464376 TTCTGAGATCCCGCGATCCC 61.464 60.000 8.23 0.00 45.32 3.85
654 657 3.274455 CTGAGATCCCGCGATCCCG 62.274 68.421 8.23 0.00 45.32 5.14
655 658 2.984155 GAGATCCCGCGATCCCGA 60.984 66.667 8.23 0.00 45.32 5.14
656 659 2.520982 AGATCCCGCGATCCCGAA 60.521 61.111 8.23 0.00 45.32 4.30
657 660 2.083835 GAGATCCCGCGATCCCGAAA 62.084 60.000 8.23 0.00 45.32 3.46
658 661 1.954651 GATCCCGCGATCCCGAAAC 60.955 63.158 8.23 0.00 39.29 2.78
659 662 3.456105 ATCCCGCGATCCCGAAACC 62.456 63.158 8.23 0.00 38.22 3.27
661 664 4.460683 CCGCGATCCCGAAACCCA 62.461 66.667 8.23 0.00 38.22 4.51
683 686 1.958205 CCGAATGCCAGATCTCGCC 60.958 63.158 9.99 0.00 0.00 5.54
684 687 1.227350 CGAATGCCAGATCTCGCCA 60.227 57.895 9.99 0.00 0.00 5.69
687 690 2.930385 AATGCCAGATCTCGCCACCG 62.930 60.000 9.99 0.00 0.00 4.94
689 692 4.899239 CCAGATCTCGCCACCGCC 62.899 72.222 0.00 0.00 0.00 6.13
845 875 4.519437 TCTCGCTGCCGATGCTGG 62.519 66.667 0.00 0.00 43.47 4.85
880 910 2.524887 TCCCACTCCGAACCCGTT 60.525 61.111 0.00 0.00 0.00 4.44
885 915 3.047877 CTCCGAACCCGTTGCCAC 61.048 66.667 0.00 0.00 0.00 5.01
909 939 3.119709 AACCCGCAGCACACAAACG 62.120 57.895 0.00 0.00 0.00 3.60
910 940 4.326766 CCCGCAGCACACAAACGG 62.327 66.667 0.00 0.00 43.44 4.44
944 974 1.673665 CCTCCAGTGGCTGCACTTC 60.674 63.158 3.51 0.00 32.26 3.01
955 985 4.980805 GCACTTCGGCGACCACCA 62.981 66.667 10.16 0.00 0.00 4.17
956 986 2.280524 CACTTCGGCGACCACCAA 60.281 61.111 10.16 0.00 0.00 3.67
957 987 2.280592 ACTTCGGCGACCACCAAC 60.281 61.111 10.16 0.00 0.00 3.77
967 997 0.893727 GACCACCAACGGCCTTTCAT 60.894 55.000 0.00 0.00 0.00 2.57
969 999 0.609131 CCACCAACGGCCTTTCATCT 60.609 55.000 0.00 0.00 0.00 2.90
970 1000 1.339631 CCACCAACGGCCTTTCATCTA 60.340 52.381 0.00 0.00 0.00 1.98
1018 1053 2.028876 CCATGCTTGGATCTTGCATCA 58.971 47.619 13.33 0.00 46.92 3.07
1022 1057 1.376543 CTTGGATCTTGCATCAGCGT 58.623 50.000 0.00 0.00 46.23 5.07
1073 1108 2.257541 ATCTCGGTGGACCCCCTCAT 62.258 60.000 0.00 0.00 0.00 2.90
1076 1111 3.480133 GGTGGACCCCCTCATCGG 61.480 72.222 0.00 0.00 0.00 4.18
1082 1117 2.851102 CCCCCTCATCGGCCATCT 60.851 66.667 2.24 0.00 0.00 2.90
1083 1118 2.455565 CCCCCTCATCGGCCATCTT 61.456 63.158 2.24 0.00 0.00 2.40
1095 1130 0.678048 GCCATCTTGAGCTCCGGTTT 60.678 55.000 12.15 0.00 0.00 3.27
1165 1200 0.106819 GATGAGGACATTGGGCAGCT 60.107 55.000 0.00 0.00 36.82 4.24
1166 1201 0.395311 ATGAGGACATTGGGCAGCTG 60.395 55.000 10.11 10.11 32.21 4.24
1198 1233 1.617947 GGTCAGCGAGGGGAAGATGT 61.618 60.000 0.00 0.00 0.00 3.06
1225 1260 0.969894 CGAGGTGTCCAAGGAGAAGT 59.030 55.000 0.00 0.00 0.00 3.01
1246 1281 3.926527 GTCGTATGTGATCAGCTTGTTCA 59.073 43.478 0.00 0.00 0.00 3.18
1290 1325 1.591703 GACGCTGGACCATGAGACA 59.408 57.895 0.00 0.00 0.00 3.41
1292 1327 1.188219 ACGCTGGACCATGAGACAGT 61.188 55.000 0.00 0.00 33.62 3.55
1342 1377 2.111999 CTGTTCGGCACCCTTGGAGA 62.112 60.000 0.00 0.00 0.00 3.71
1370 1405 1.892338 CAATTGGCGCCATCAACCT 59.108 52.632 33.25 8.32 0.00 3.50
1387 1422 3.788227 ACCTACTGAAAGCCAACATCA 57.212 42.857 0.00 0.00 37.60 3.07
1396 1431 4.832266 TGAAAGCCAACATCATGTACCTTT 59.168 37.500 8.98 8.98 30.33 3.11
1420 1455 0.039617 CGGCGACAAAATTCTTGGCA 60.040 50.000 0.00 0.00 0.00 4.92
1451 1486 7.040494 GTGGTTACTAAGAAGATAACTGGGAC 58.960 42.308 0.00 0.00 0.00 4.46
1469 1504 6.014771 TGGGACTTCTTGTCTAGCTATAGA 57.985 41.667 3.21 0.00 44.74 1.98
1477 1512 6.849151 TCTTGTCTAGCTATAGATGTACCCA 58.151 40.000 3.21 0.00 40.16 4.51
1513 1548 0.179032 ATGTGTGCTTCCAACGTGGA 60.179 50.000 0.00 0.00 46.61 4.02
1548 1583 5.450965 CCAAATTCCATCTGCAGGTAACATC 60.451 44.000 15.13 0.00 41.41 3.06
1557 1592 3.758023 CTGCAGGTAACATCCACATTTGA 59.242 43.478 5.57 0.00 41.41 2.69
1559 1594 4.398988 TGCAGGTAACATCCACATTTGATC 59.601 41.667 0.00 0.00 41.41 2.92
1651 1695 9.520204 ACATTTCATTTTAACTTGTCTTGTGAG 57.480 29.630 0.00 0.00 0.00 3.51
1661 1705 4.697352 ACTTGTCTTGTGAGATTATGTGCC 59.303 41.667 0.00 0.00 33.70 5.01
1699 1743 0.478072 TGGCACTCCACTCAAACCAT 59.522 50.000 0.00 0.00 37.47 3.55
1750 1794 2.424246 CTCCCTCTCTACGTTGAACTCC 59.576 54.545 0.00 0.00 0.00 3.85
1812 1856 6.529463 AAATTTCCTGCAAAAATTGTCTCG 57.471 33.333 16.15 0.00 36.65 4.04
1843 1887 6.676237 TCGCTTCTGAATACAATTGCATTA 57.324 33.333 5.05 0.00 0.00 1.90
1854 1898 9.674824 GAATACAATTGCATTATGAAGAGAAGG 57.325 33.333 5.05 0.00 0.00 3.46
1926 1971 0.107017 ACATTCTTGGCTCATCCGGG 60.107 55.000 0.00 0.00 37.80 5.73
1952 2012 4.008330 CTGATCCTTTTGCTCTGTGTGAT 58.992 43.478 0.00 0.00 0.00 3.06
1953 2013 3.754850 TGATCCTTTTGCTCTGTGTGATG 59.245 43.478 0.00 0.00 0.00 3.07
1978 2038 1.541310 ATCTTCCGGCTGGTGAACGA 61.541 55.000 12.43 2.65 36.30 3.85
2016 2076 1.978542 CATGCTGCTGTTGCTTCTTC 58.021 50.000 0.00 0.00 40.48 2.87
2020 2080 2.146342 GCTGCTGTTGCTTCTTCAGTA 58.854 47.619 0.00 0.00 40.48 2.74
2025 2085 3.753272 GCTGTTGCTTCTTCAGTATGGAA 59.247 43.478 0.00 0.00 34.25 3.53
2026 2086 4.378874 GCTGTTGCTTCTTCAGTATGGAAC 60.379 45.833 0.00 0.00 34.25 3.62
2027 2087 6.769171 GCTGTTGCTTCTTCAGTATGGAACA 61.769 44.000 0.00 0.00 36.81 3.18
2084 2169 5.514279 GCATGCTGTTGTTCTATATTGGTC 58.486 41.667 11.37 0.00 0.00 4.02
2151 2236 9.026121 ACTAATGTAGCTTCTTTCTCTAAGTGA 57.974 33.333 0.00 0.00 35.28 3.41
2211 2322 4.339748 TCTCTGCTTCTCTCTATGTGTGT 58.660 43.478 0.00 0.00 0.00 3.72
2230 2341 3.063452 GTGTGTGTGTCTGTTACAGTTGG 59.937 47.826 12.41 0.00 39.29 3.77
2254 2365 5.203528 AGCAGCACCTAATTATTGTGGATT 58.796 37.500 13.93 0.00 0.00 3.01
2359 2470 6.017400 TCTTGGAATTTGATGTTCTCAAGC 57.983 37.500 0.00 0.00 44.48 4.01
2404 2515 6.342111 AGGCAAAATTCTCTAGCAGTACTAC 58.658 40.000 0.00 0.00 0.00 2.73
2405 2516 6.070767 AGGCAAAATTCTCTAGCAGTACTACA 60.071 38.462 0.00 0.00 0.00 2.74
2406 2517 6.256757 GGCAAAATTCTCTAGCAGTACTACAG 59.743 42.308 0.00 0.00 0.00 2.74
2407 2518 7.036220 GCAAAATTCTCTAGCAGTACTACAGA 58.964 38.462 0.00 0.00 0.00 3.41
2408 2519 7.545965 GCAAAATTCTCTAGCAGTACTACAGAA 59.454 37.037 0.00 0.00 39.36 3.02
2409 2520 9.424319 CAAAATTCTCTAGCAGTACTACAGAAA 57.576 33.333 0.00 0.00 38.76 2.52
2410 2521 9.998106 AAAATTCTCTAGCAGTACTACAGAAAA 57.002 29.630 0.00 0.00 38.76 2.29
2411 2522 9.998106 AAATTCTCTAGCAGTACTACAGAAAAA 57.002 29.630 0.00 0.00 38.76 1.94
2531 2642 6.994421 AAAAGAAATTAGGAAAAGCAGGGA 57.006 33.333 0.00 0.00 0.00 4.20
2532 2643 6.596309 AAAGAAATTAGGAAAAGCAGGGAG 57.404 37.500 0.00 0.00 0.00 4.30
2533 2644 5.520748 AGAAATTAGGAAAAGCAGGGAGA 57.479 39.130 0.00 0.00 0.00 3.71
2534 2645 6.084749 AGAAATTAGGAAAAGCAGGGAGAT 57.915 37.500 0.00 0.00 0.00 2.75
2535 2646 6.125719 AGAAATTAGGAAAAGCAGGGAGATC 58.874 40.000 0.00 0.00 0.00 2.75
2536 2647 5.456921 AATTAGGAAAAGCAGGGAGATCA 57.543 39.130 0.00 0.00 0.00 2.92
2537 2648 5.659849 ATTAGGAAAAGCAGGGAGATCAT 57.340 39.130 0.00 0.00 0.00 2.45
2538 2649 6.770286 ATTAGGAAAAGCAGGGAGATCATA 57.230 37.500 0.00 0.00 0.00 2.15
2539 2650 6.575244 TTAGGAAAAGCAGGGAGATCATAA 57.425 37.500 0.00 0.00 0.00 1.90
2540 2651 5.456921 AGGAAAAGCAGGGAGATCATAAA 57.543 39.130 0.00 0.00 0.00 1.40
2541 2652 5.831103 AGGAAAAGCAGGGAGATCATAAAA 58.169 37.500 0.00 0.00 0.00 1.52
2542 2653 6.256053 AGGAAAAGCAGGGAGATCATAAAAA 58.744 36.000 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
405 408 0.253044 GAGCTTAGGACATGGGTGCA 59.747 55.000 0.00 0.00 37.91 4.57
467 470 7.791029 TGTCACAGGATAAGTTGCTTATGATA 58.209 34.615 6.17 0.00 36.87 2.15
504 507 4.580167 ACACACACTAGCACAAATGTCAAT 59.420 37.500 0.00 0.00 0.00 2.57
507 510 3.312421 ACACACACACTAGCACAAATGTC 59.688 43.478 0.00 0.00 0.00 3.06
508 511 3.278574 ACACACACACTAGCACAAATGT 58.721 40.909 0.00 0.00 0.00 2.71
509 512 3.561310 AGACACACACACTAGCACAAATG 59.439 43.478 0.00 0.00 0.00 2.32
510 513 3.808728 AGACACACACACTAGCACAAAT 58.191 40.909 0.00 0.00 0.00 2.32
511 514 3.260475 AGACACACACACTAGCACAAA 57.740 42.857 0.00 0.00 0.00 2.83
512 515 2.979814 AGACACACACACTAGCACAA 57.020 45.000 0.00 0.00 0.00 3.33
513 516 5.914898 ATATAGACACACACACTAGCACA 57.085 39.130 0.00 0.00 0.00 4.57
514 517 6.792326 TGTATATAGACACACACACTAGCAC 58.208 40.000 0.00 0.00 0.00 4.40
515 518 7.582667 ATGTATATAGACACACACACTAGCA 57.417 36.000 1.52 0.00 30.52 3.49
572 575 9.354673 CCCGGAATTAGAATAATGCCAATATAT 57.645 33.333 0.73 0.00 0.00 0.86
573 576 8.553153 TCCCGGAATTAGAATAATGCCAATATA 58.447 33.333 0.73 0.00 0.00 0.86
574 577 7.410174 TCCCGGAATTAGAATAATGCCAATAT 58.590 34.615 0.73 0.00 0.00 1.28
575 578 6.785076 TCCCGGAATTAGAATAATGCCAATA 58.215 36.000 0.73 0.00 0.00 1.90
576 579 5.640147 TCCCGGAATTAGAATAATGCCAAT 58.360 37.500 0.73 0.00 0.00 3.16
577 580 5.055265 TCCCGGAATTAGAATAATGCCAA 57.945 39.130 0.73 0.00 0.00 4.52
578 581 4.715534 TCCCGGAATTAGAATAATGCCA 57.284 40.909 0.73 0.00 0.00 4.92
579 582 7.110155 TCTAATCCCGGAATTAGAATAATGCC 58.890 38.462 19.75 0.00 42.47 4.40
580 583 8.561738 TTCTAATCCCGGAATTAGAATAATGC 57.438 34.615 26.67 0.00 46.09 3.56
590 593 9.297037 CCAAATAACTATTCTAATCCCGGAATT 57.703 33.333 0.73 0.00 34.52 2.17
591 594 8.665906 TCCAAATAACTATTCTAATCCCGGAAT 58.334 33.333 0.73 0.00 36.36 3.01
592 595 8.036585 TCCAAATAACTATTCTAATCCCGGAA 57.963 34.615 0.73 0.00 0.00 4.30
593 596 7.621006 TCCAAATAACTATTCTAATCCCGGA 57.379 36.000 0.73 0.00 0.00 5.14
594 597 8.100791 TGATCCAAATAACTATTCTAATCCCGG 58.899 37.037 0.00 0.00 0.00 5.73
595 598 8.936864 GTGATCCAAATAACTATTCTAATCCCG 58.063 37.037 0.00 0.00 0.00 5.14
596 599 8.936864 CGTGATCCAAATAACTATTCTAATCCC 58.063 37.037 0.00 0.00 0.00 3.85
597 600 8.936864 CCGTGATCCAAATAACTATTCTAATCC 58.063 37.037 0.00 0.00 0.00 3.01
598 601 8.443937 GCCGTGATCCAAATAACTATTCTAATC 58.556 37.037 0.00 0.00 0.00 1.75
599 602 7.390718 GGCCGTGATCCAAATAACTATTCTAAT 59.609 37.037 0.00 0.00 0.00 1.73
600 603 6.708949 GGCCGTGATCCAAATAACTATTCTAA 59.291 38.462 0.00 0.00 0.00 2.10
601 604 6.228258 GGCCGTGATCCAAATAACTATTCTA 58.772 40.000 0.00 0.00 0.00 2.10
602 605 5.063880 GGCCGTGATCCAAATAACTATTCT 58.936 41.667 0.00 0.00 0.00 2.40
603 606 4.084013 CGGCCGTGATCCAAATAACTATTC 60.084 45.833 19.50 0.00 0.00 1.75
604 607 3.813166 CGGCCGTGATCCAAATAACTATT 59.187 43.478 19.50 0.00 0.00 1.73
605 608 3.181458 ACGGCCGTGATCCAAATAACTAT 60.181 43.478 33.75 0.00 0.00 2.12
606 609 2.168936 ACGGCCGTGATCCAAATAACTA 59.831 45.455 33.75 0.00 0.00 2.24
607 610 1.065709 ACGGCCGTGATCCAAATAACT 60.066 47.619 33.75 0.00 0.00 2.24
608 611 1.329599 GACGGCCGTGATCCAAATAAC 59.670 52.381 39.65 13.02 0.00 1.89
609 612 1.066071 TGACGGCCGTGATCCAAATAA 60.066 47.619 39.65 0.92 0.00 1.40
610 613 0.537653 TGACGGCCGTGATCCAAATA 59.462 50.000 39.65 7.10 0.00 1.40
611 614 0.322098 TTGACGGCCGTGATCCAAAT 60.322 50.000 39.65 7.32 0.00 2.32
612 615 1.071642 TTGACGGCCGTGATCCAAA 59.928 52.632 39.65 16.55 0.00 3.28
613 616 1.669760 GTTGACGGCCGTGATCCAA 60.670 57.895 39.65 29.28 0.00 3.53
614 617 2.047655 GTTGACGGCCGTGATCCA 60.048 61.111 39.65 24.98 0.00 3.41
615 618 3.186047 CGTTGACGGCCGTGATCC 61.186 66.667 39.65 22.30 35.37 3.36
616 619 1.562575 AAACGTTGACGGCCGTGATC 61.563 55.000 39.65 25.84 44.95 2.92
617 620 1.562575 GAAACGTTGACGGCCGTGAT 61.563 55.000 39.65 12.57 44.95 3.06
618 621 2.202905 AAACGTTGACGGCCGTGA 60.203 55.556 39.65 28.20 44.95 4.35
619 622 2.241880 AGAAACGTTGACGGCCGTG 61.242 57.895 39.65 24.15 44.95 4.94
620 623 2.107546 AGAAACGTTGACGGCCGT 59.892 55.556 34.89 34.89 44.95 5.68
621 624 1.886861 CTCAGAAACGTTGACGGCCG 61.887 60.000 26.86 26.86 44.95 6.13
622 625 0.599204 TCTCAGAAACGTTGACGGCC 60.599 55.000 0.00 0.00 44.95 6.13
623 626 1.390463 GATCTCAGAAACGTTGACGGC 59.610 52.381 0.00 0.00 44.95 5.68
624 627 1.993370 GGATCTCAGAAACGTTGACGG 59.007 52.381 0.00 0.34 44.95 4.79
625 628 1.993370 GGGATCTCAGAAACGTTGACG 59.007 52.381 0.00 1.41 46.33 4.35
626 629 1.993370 CGGGATCTCAGAAACGTTGAC 59.007 52.381 0.00 0.00 0.00 3.18
627 630 1.671850 GCGGGATCTCAGAAACGTTGA 60.672 52.381 0.00 0.00 0.00 3.18
628 631 0.721718 GCGGGATCTCAGAAACGTTG 59.278 55.000 0.00 0.00 0.00 4.10
629 632 0.736325 CGCGGGATCTCAGAAACGTT 60.736 55.000 0.00 0.00 0.00 3.99
630 633 1.153823 CGCGGGATCTCAGAAACGT 60.154 57.895 0.00 0.00 0.00 3.99
631 634 0.249073 ATCGCGGGATCTCAGAAACG 60.249 55.000 9.50 0.00 0.00 3.60
632 635 1.492720 GATCGCGGGATCTCAGAAAC 58.507 55.000 29.36 6.51 44.66 2.78
633 636 0.389391 GGATCGCGGGATCTCAGAAA 59.611 55.000 33.14 0.00 46.77 2.52
634 637 2.041976 GGATCGCGGGATCTCAGAA 58.958 57.895 33.14 0.00 46.77 3.02
635 638 3.765051 GGATCGCGGGATCTCAGA 58.235 61.111 33.14 0.00 46.77 3.27
638 641 2.083835 TTTCGGGATCGCGGGATCTC 62.084 60.000 33.14 30.56 46.77 2.75
639 642 2.131709 TTTCGGGATCGCGGGATCT 61.132 57.895 33.14 8.83 46.77 2.75
640 643 1.954651 GTTTCGGGATCGCGGGATC 60.955 63.158 28.94 28.94 46.85 3.36
641 644 2.108362 GTTTCGGGATCGCGGGAT 59.892 61.111 28.92 15.66 36.13 3.85
642 645 4.151582 GGTTTCGGGATCGCGGGA 62.152 66.667 28.92 16.77 36.13 5.14
644 647 4.460683 TGGGTTTCGGGATCGCGG 62.461 66.667 28.92 12.81 36.13 6.46
645 648 3.192922 GTGGGTTTCGGGATCGCG 61.193 66.667 24.78 24.78 36.13 5.87
646 649 2.822701 GGTGGGTTTCGGGATCGC 60.823 66.667 0.00 0.00 36.13 4.58
647 650 2.124860 GGGTGGGTTTCGGGATCG 60.125 66.667 0.00 0.00 37.82 3.69
648 651 2.274432 GGGGTGGGTTTCGGGATC 59.726 66.667 0.00 0.00 0.00 3.36
649 652 3.344176 GGGGGTGGGTTTCGGGAT 61.344 66.667 0.00 0.00 0.00 3.85
652 655 3.276642 ATTCGGGGGTGGGTTTCGG 62.277 63.158 0.00 0.00 0.00 4.30
653 656 2.043980 CATTCGGGGGTGGGTTTCG 61.044 63.158 0.00 0.00 0.00 3.46
654 657 2.348104 GCATTCGGGGGTGGGTTTC 61.348 63.158 0.00 0.00 0.00 2.78
655 658 2.283604 GCATTCGGGGGTGGGTTT 60.284 61.111 0.00 0.00 0.00 3.27
656 659 4.376170 GGCATTCGGGGGTGGGTT 62.376 66.667 0.00 0.00 0.00 4.11
658 661 4.820744 CTGGCATTCGGGGGTGGG 62.821 72.222 0.00 0.00 0.00 4.61
659 662 2.965716 GATCTGGCATTCGGGGGTGG 62.966 65.000 0.00 0.00 0.00 4.61
660 663 1.526917 GATCTGGCATTCGGGGGTG 60.527 63.158 0.00 0.00 0.00 4.61
661 664 1.694169 AGATCTGGCATTCGGGGGT 60.694 57.895 0.00 0.00 0.00 4.95
709 712 3.237741 GCTGGATCGGGGAGGAGG 61.238 72.222 0.00 0.00 0.00 4.30
718 721 3.257561 CTTGACGCCGCTGGATCG 61.258 66.667 0.00 0.00 0.00 3.69
733 736 2.304831 GGCAGGAGGGGAAGAGCTT 61.305 63.158 0.00 0.00 0.00 3.74
859 889 3.308705 GGTTCGGAGTGGGACGGT 61.309 66.667 0.00 0.00 0.00 4.83
860 890 4.078516 GGGTTCGGAGTGGGACGG 62.079 72.222 0.00 0.00 0.00 4.79
864 894 2.358247 CAACGGGTTCGGAGTGGG 60.358 66.667 0.00 0.00 41.39 4.61
889 919 2.780094 TTTGTGTGCTGCGGGTTGG 61.780 57.895 0.00 0.00 0.00 3.77
891 921 2.804856 GTTTGTGTGCTGCGGGTT 59.195 55.556 0.00 0.00 0.00 4.11
936 966 3.414700 GTGGTCGCCGAAGTGCAG 61.415 66.667 0.00 0.00 0.00 4.41
949 979 0.893727 GATGAAAGGCCGTTGGTGGT 60.894 55.000 9.25 0.00 0.00 4.16
952 982 1.674817 CGTAGATGAAAGGCCGTTGGT 60.675 52.381 9.25 0.00 0.00 3.67
955 985 0.249398 AGCGTAGATGAAAGGCCGTT 59.751 50.000 2.60 2.60 0.00 4.44
956 986 1.898154 AGCGTAGATGAAAGGCCGT 59.102 52.632 0.00 0.00 0.00 5.68
957 987 4.835927 AGCGTAGATGAAAGGCCG 57.164 55.556 0.00 0.00 0.00 6.13
967 997 3.075005 GGGTGGCTCCAGCGTAGA 61.075 66.667 11.46 0.00 44.48 2.59
1001 1036 1.100510 GCTGATGCAAGATCCAAGCA 58.899 50.000 6.76 6.76 43.14 3.91
1031 1066 3.465403 CCCAGCTCTCGTCCAGGG 61.465 72.222 0.00 0.00 0.00 4.45
1073 1108 2.903357 GGAGCTCAAGATGGCCGA 59.097 61.111 17.19 0.00 0.00 5.54
1076 1111 0.678048 AAACCGGAGCTCAAGATGGC 60.678 55.000 17.19 0.00 0.00 4.40
1079 1114 1.673033 CGACAAACCGGAGCTCAAGAT 60.673 52.381 17.19 0.00 0.00 2.40
1082 1117 0.319555 CTCGACAAACCGGAGCTCAA 60.320 55.000 17.19 0.00 0.00 3.02
1083 1118 1.289066 CTCGACAAACCGGAGCTCA 59.711 57.895 17.19 0.00 0.00 4.26
1095 1130 3.443925 CCTCTCGGCAGCTCGACA 61.444 66.667 2.24 0.00 35.18 4.35
1178 1213 2.427245 ATCTTCCCCTCGCTGACCG 61.427 63.158 0.00 0.00 38.61 4.79
1198 1233 1.174078 TTGGACACCTCGACGTAGCA 61.174 55.000 0.00 0.00 0.00 3.49
1225 1260 3.926527 GTGAACAAGCTGATCACATACGA 59.073 43.478 17.30 0.00 45.72 3.43
1264 1299 2.262915 GTCCAGCGTCCAGGAGTG 59.737 66.667 0.00 0.00 33.85 3.51
1265 1300 2.997897 GGTCCAGCGTCCAGGAGT 60.998 66.667 0.00 0.00 33.85 3.85
1290 1325 2.676748 TCCCAAATTGGAGCAAACACT 58.323 42.857 14.62 0.00 40.96 3.55
1292 1327 3.237746 TCATCCCAAATTGGAGCAAACA 58.762 40.909 14.62 0.00 40.96 2.83
1342 1377 1.300266 GCGCCAATTGCCAGCATTTT 61.300 50.000 0.00 0.00 36.24 1.82
1370 1405 4.941263 GGTACATGATGTTGGCTTTCAGTA 59.059 41.667 2.29 0.00 0.00 2.74
1420 1455 8.915036 AGTTATCTTCTTAGTAACCACATCGAT 58.085 33.333 0.00 0.00 0.00 3.59
1451 1486 7.448777 TGGGTACATCTATAGCTAGACAAGAAG 59.551 40.741 0.00 0.00 36.81 2.85
1456 1491 7.238710 TGATTGGGTACATCTATAGCTAGACA 58.761 38.462 0.00 0.00 36.81 3.41
1469 1504 3.954662 AGTAGGGGATGATTGGGTACAT 58.045 45.455 0.00 0.00 0.00 2.29
1477 1512 4.103153 CACACATGGTAGTAGGGGATGATT 59.897 45.833 0.00 0.00 0.00 2.57
1521 1556 2.025037 ACCTGCAGATGGAATTTGGCTA 60.025 45.455 17.39 0.00 0.00 3.93
1548 1583 2.093500 TCCAGGACTCGATCAAATGTGG 60.093 50.000 0.00 0.00 0.00 4.17
1557 1592 0.898320 CACCACTTCCAGGACTCGAT 59.102 55.000 0.00 0.00 0.00 3.59
1559 1594 0.679505 TTCACCACTTCCAGGACTCG 59.320 55.000 0.00 0.00 0.00 4.18
1651 1695 2.092646 TGGTGGTACAGGGCACATAATC 60.093 50.000 0.00 0.00 41.80 1.75
1661 1705 1.667830 CAGCGTGTGGTGGTACAGG 60.668 63.158 0.00 0.00 41.80 4.00
1684 1728 1.143684 AGCACATGGTTTGAGTGGAGT 59.856 47.619 0.00 0.00 33.98 3.85
1693 1737 2.887152 GTTGAAGAGGAGCACATGGTTT 59.113 45.455 0.00 0.00 0.00 3.27
1699 1743 0.750249 TGACGTTGAAGAGGAGCACA 59.250 50.000 0.00 0.00 0.00 4.57
1750 1794 5.415077 AGAAGTTCAAATCCTCATGCAGAAG 59.585 40.000 5.50 0.00 0.00 2.85
1812 1856 8.798153 CAATTGTATTCAGAAGCGAAATTTACC 58.202 33.333 0.00 0.00 0.00 2.85
1843 1887 5.066913 ACAGGGAAAAACCTTCTCTTCAT 57.933 39.130 0.00 0.00 39.34 2.57
1854 1898 3.326880 TCTCCTCACCTACAGGGAAAAAC 59.673 47.826 0.00 0.00 40.27 2.43
1926 1971 2.555757 ACAGAGCAAAAGGATCAGCAAC 59.444 45.455 0.00 0.00 33.23 4.17
1978 2038 3.116096 TGCTAGGTATCAGAAGTGGGT 57.884 47.619 0.00 0.00 0.00 4.51
2016 2076 3.797039 ACGATCCACATGTTCCATACTG 58.203 45.455 0.00 0.00 0.00 2.74
2084 2169 0.868602 GCGCTGCACCATTAGCATTG 60.869 55.000 0.00 0.00 41.82 2.82
2151 2236 1.257743 TAGAGAGCAGCAACGACCTT 58.742 50.000 0.00 0.00 0.00 3.50
2211 2322 3.792401 CTCCAACTGTAACAGACACACA 58.208 45.455 0.00 0.00 35.18 3.72
2230 2341 4.199310 TCCACAATAATTAGGTGCTGCTC 58.801 43.478 12.35 0.00 0.00 4.26
2254 2365 7.310113 ACTTGACAAAGGTTATTTGACCACAAA 60.310 33.333 7.30 0.00 42.27 2.83
2267 2378 5.829924 AGAATCATCACACTTGACAAAGGTT 59.170 36.000 0.00 0.00 37.76 3.50
2359 2470 3.581755 TCACGGGAATTACAACGAGAAG 58.418 45.455 0.00 0.00 0.00 2.85
2382 2493 7.036220 TCTGTAGTACTGCTAGAGAATTTTGC 58.964 38.462 12.42 0.00 44.14 3.68
2507 2618 7.290014 TCTCCCTGCTTTTCCTAATTTCTTTTT 59.710 33.333 0.00 0.00 0.00 1.94
2508 2619 6.782494 TCTCCCTGCTTTTCCTAATTTCTTTT 59.218 34.615 0.00 0.00 0.00 2.27
2509 2620 6.314917 TCTCCCTGCTTTTCCTAATTTCTTT 58.685 36.000 0.00 0.00 0.00 2.52
2510 2621 5.892348 TCTCCCTGCTTTTCCTAATTTCTT 58.108 37.500 0.00 0.00 0.00 2.52
2511 2622 5.520748 TCTCCCTGCTTTTCCTAATTTCT 57.479 39.130 0.00 0.00 0.00 2.52
2512 2623 5.888161 TGATCTCCCTGCTTTTCCTAATTTC 59.112 40.000 0.00 0.00 0.00 2.17
2513 2624 5.831103 TGATCTCCCTGCTTTTCCTAATTT 58.169 37.500 0.00 0.00 0.00 1.82
2514 2625 5.456921 TGATCTCCCTGCTTTTCCTAATT 57.543 39.130 0.00 0.00 0.00 1.40
2515 2626 5.659849 ATGATCTCCCTGCTTTTCCTAAT 57.340 39.130 0.00 0.00 0.00 1.73
2516 2627 6.575244 TTATGATCTCCCTGCTTTTCCTAA 57.425 37.500 0.00 0.00 0.00 2.69
2517 2628 6.575244 TTTATGATCTCCCTGCTTTTCCTA 57.425 37.500 0.00 0.00 0.00 2.94
2518 2629 5.456921 TTTATGATCTCCCTGCTTTTCCT 57.543 39.130 0.00 0.00 0.00 3.36
2519 2630 6.530019 TTTTTATGATCTCCCTGCTTTTCC 57.470 37.500 0.00 0.00 0.00 3.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.