Multiple sequence alignment - TraesCS7A01G279500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G279500 chr7A 100.000 3474 0 0 1672 5145 298857144 298860617 0.000000e+00 6416.0
1 TraesCS7A01G279500 chr7A 100.000 1367 0 0 1 1367 298855473 298856839 0.000000e+00 2525.0
2 TraesCS7A01G279500 chr7A 85.791 556 58 17 1 548 125105945 125106487 2.080000e-158 569.0
3 TraesCS7A01G279500 chr7D 95.714 2403 48 14 2068 4456 269530666 269528305 0.000000e+00 3816.0
4 TraesCS7A01G279500 chr7D 90.302 464 15 7 912 1367 269531847 269531406 9.600000e-162 580.0
5 TraesCS7A01G279500 chr7D 90.465 430 39 2 4718 5145 269525864 269525435 2.690000e-157 566.0
6 TraesCS7A01G279500 chr7D 98.039 255 5 0 1778 2032 269530921 269530667 1.310000e-120 444.0
7 TraesCS7A01G279500 chr7D 81.098 328 57 5 4820 5143 106884018 106884344 1.840000e-64 257.0
8 TraesCS7A01G279500 chr7D 83.893 298 8 13 4446 4726 269526762 269526488 1.110000e-61 248.0
9 TraesCS7A01G279500 chr7D 97.059 136 3 1 912 1047 269532391 269532257 1.440000e-55 228.0
10 TraesCS7A01G279500 chr7D 100.000 44 0 0 1672 1715 269530962 269530919 1.190000e-11 82.4
11 TraesCS7A01G279500 chr7B 94.783 2147 56 27 2518 4641 270526542 270524429 0.000000e+00 3293.0
12 TraesCS7A01G279500 chr7B 97.030 404 12 0 1672 2075 270527612 270527209 0.000000e+00 680.0
13 TraesCS7A01G279500 chr7B 96.867 383 8 3 2106 2487 270527208 270526829 5.620000e-179 638.0
14 TraesCS7A01G279500 chr7B 96.382 387 12 1 955 1341 270528385 270528001 2.020000e-178 636.0
15 TraesCS7A01G279500 chr7B 89.822 393 30 5 4689 5076 270524430 270524043 3.580000e-136 496.0
16 TraesCS7A01G279500 chr7B 90.262 267 24 2 548 813 124132159 124131894 1.060000e-91 348.0
17 TraesCS7A01G279500 chr7B 79.755 326 62 4 4821 5143 483025486 483025810 3.100000e-57 233.0
18 TraesCS7A01G279500 chr6D 87.321 560 49 16 1 547 362224734 362225284 5.660000e-174 621.0
19 TraesCS7A01G279500 chr6D 90.494 263 23 2 545 806 359698152 359698413 3.810000e-91 346.0
20 TraesCS7A01G279500 chr6D 84.049 326 48 4 4821 5143 427470838 427470514 1.390000e-80 311.0
21 TraesCS7A01G279500 chr6D 83.051 295 41 9 4857 5145 433362476 433362185 5.110000e-65 259.0
22 TraesCS7A01G279500 chr6D 80.997 321 51 9 4829 5145 422180492 422180178 3.980000e-61 246.0
23 TraesCS7A01G279500 chr6D 80.000 265 42 11 4886 5145 174338263 174338521 8.800000e-43 185.0
24 TraesCS7A01G279500 chr4D 87.044 548 53 17 1 536 400885828 400886369 2.050000e-168 603.0
25 TraesCS7A01G279500 chr4D 86.583 559 57 13 1 548 22583858 22584409 7.370000e-168 601.0
26 TraesCS7A01G279500 chr4D 82.317 328 52 6 4822 5145 320760077 320760402 3.920000e-71 279.0
27 TraesCS7A01G279500 chr4D 82.188 320 51 6 4828 5143 20535112 20534795 2.360000e-68 270.0
28 TraesCS7A01G279500 chr4D 81.298 262 45 4 4887 5145 507976136 507976396 5.220000e-50 209.0
29 TraesCS7A01G279500 chr4D 78.105 306 60 7 4828 5131 472943020 472943320 2.450000e-43 187.0
30 TraesCS7A01G279500 chr3B 85.714 567 58 16 1 551 568008727 568008168 1.240000e-160 577.0
31 TraesCS7A01G279500 chr3B 90.706 269 22 3 548 814 623667541 623667274 6.340000e-94 355.0
32 TraesCS7A01G279500 chr3B 91.797 256 19 2 545 799 766049441 766049695 6.340000e-94 355.0
33 TraesCS7A01G279500 chr4A 85.610 549 61 14 1 538 572644715 572645256 1.250000e-155 560.0
34 TraesCS7A01G279500 chr4A 84.821 560 67 14 1 548 678883511 678882958 9.740000e-152 547.0
35 TraesCS7A01G279500 chr1A 84.683 568 58 20 1 548 314437178 314437736 1.630000e-149 540.0
36 TraesCS7A01G279500 chr6A 84.448 553 65 17 1 538 448152734 448153280 4.560000e-145 525.0
37 TraesCS7A01G279500 chr6A 91.797 256 19 2 545 799 57972557 57972811 6.340000e-94 355.0
38 TraesCS7A01G279500 chr6A 91.797 256 19 2 545 799 181909888 181910142 6.340000e-94 355.0
39 TraesCS7A01G279500 chr6A 92.095 253 17 3 548 799 571189387 571189137 2.280000e-93 353.0
40 TraesCS7A01G279500 chr1B 90.875 263 22 2 545 806 547249056 547249317 8.200000e-93 351.0
41 TraesCS7A01G279500 chrUn 90.262 267 24 2 545 810 87042599 87042864 1.060000e-91 348.0
42 TraesCS7A01G279500 chrUn 85.470 117 15 2 4918 5033 296002781 296002896 2.520000e-23 121.0
43 TraesCS7A01G279500 chr5D 82.623 305 49 4 4844 5145 466585180 466585483 3.050000e-67 267.0
44 TraesCS7A01G279500 chr5D 80.909 330 57 6 4820 5145 388049613 388049940 6.610000e-64 255.0
45 TraesCS7A01G279500 chr5D 81.229 293 50 5 4850 5139 222862467 222862177 1.110000e-56 231.0
46 TraesCS7A01G279500 chr1D 81.522 276 41 8 4875 5143 474884506 474884778 8.670000e-53 219.0
47 TraesCS7A01G279500 chr1D 79.208 202 35 7 4894 5092 489552577 489552774 3.230000e-27 134.0
48 TraesCS7A01G279500 chr1D 85.470 117 15 2 4918 5033 8411176 8411291 2.520000e-23 121.0
49 TraesCS7A01G279500 chr1D 85.470 117 15 2 4918 5033 8442842 8442957 2.520000e-23 121.0
50 TraesCS7A01G279500 chr1D 82.955 88 13 2 4820 4906 416852594 416852508 1.540000e-10 78.7
51 TraesCS7A01G279500 chr4B 82.553 235 35 6 4844 5075 32486330 32486099 8.740000e-48 202.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G279500 chr7A 298855473 298860617 5144 False 4470.500000 6416 100.000000 1 5145 2 chr7A.!!$F2 5144
1 TraesCS7A01G279500 chr7A 125105945 125106487 542 False 569.000000 569 85.791000 1 548 1 chr7A.!!$F1 547
2 TraesCS7A01G279500 chr7D 269525435 269532391 6956 True 852.057143 3816 93.638857 912 5145 7 chr7D.!!$R1 4233
3 TraesCS7A01G279500 chr7B 270524043 270528385 4342 True 1148.600000 3293 94.976800 955 5076 5 chr7B.!!$R2 4121
4 TraesCS7A01G279500 chr6D 362224734 362225284 550 False 621.000000 621 87.321000 1 547 1 chr6D.!!$F3 546
5 TraesCS7A01G279500 chr4D 400885828 400886369 541 False 603.000000 603 87.044000 1 536 1 chr4D.!!$F3 535
6 TraesCS7A01G279500 chr4D 22583858 22584409 551 False 601.000000 601 86.583000 1 548 1 chr4D.!!$F1 547
7 TraesCS7A01G279500 chr3B 568008168 568008727 559 True 577.000000 577 85.714000 1 551 1 chr3B.!!$R1 550
8 TraesCS7A01G279500 chr4A 572644715 572645256 541 False 560.000000 560 85.610000 1 538 1 chr4A.!!$F1 537
9 TraesCS7A01G279500 chr4A 678882958 678883511 553 True 547.000000 547 84.821000 1 548 1 chr4A.!!$R1 547
10 TraesCS7A01G279500 chr1A 314437178 314437736 558 False 540.000000 540 84.683000 1 548 1 chr1A.!!$F1 547
11 TraesCS7A01G279500 chr6A 448152734 448153280 546 False 525.000000 525 84.448000 1 538 1 chr6A.!!$F3 537

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
618 654 0.108424 CCTCCAAGAGACTGAAGCCG 60.108 60.0 0.00 0.0 0.00 5.52 F
689 725 0.112606 AGAACGTCTCCTCCCACTGA 59.887 55.0 0.00 0.0 0.00 3.41 F
857 893 0.241749 TACACGTGTGAAGGTAGGCG 59.758 55.0 30.83 0.0 0.00 5.52 F
874 910 0.248866 GCGGGTTGGAGTTGTTGTTG 60.249 55.0 0.00 0.0 0.00 3.33 F
2604 3599 0.106419 TTTCCTGCTGAACCCCGTTT 60.106 50.0 0.00 0.0 31.05 3.60 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1954 2691 2.203195 AACACAGGCAGAAGCGCA 60.203 55.556 11.47 0.0 43.41 6.09 R
2600 3595 3.944422 AGTAGTTCACAAGTGCAAACG 57.056 42.857 0.00 0.0 0.00 3.60 R
2604 3599 6.183360 CGCATATTAAGTAGTTCACAAGTGCA 60.183 38.462 0.00 0.0 0.00 4.57 R
2701 3697 7.778853 AGAGCAATGTGGATTCTTTGAGATTAT 59.221 33.333 0.00 0.0 0.00 1.28 R
4423 5446 0.389296 TATGCAGCTACAACGCACGT 60.389 50.000 0.00 0.0 38.73 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
444 480 8.954350 CAACATGGATCTAGTTTTGAAGATCTT 58.046 33.333 7.95 7.95 37.77 2.40
451 487 3.131396 AGTTTTGAAGATCTTGACGCGT 58.869 40.909 13.85 13.85 0.00 6.01
556 592 6.628919 AAAAAGGTAAAACTCGCATACACT 57.371 33.333 0.00 0.00 0.00 3.55
557 593 5.857822 AAAGGTAAAACTCGCATACACTC 57.142 39.130 0.00 0.00 0.00 3.51
558 594 4.530710 AGGTAAAACTCGCATACACTCA 57.469 40.909 0.00 0.00 0.00 3.41
559 595 4.243270 AGGTAAAACTCGCATACACTCAC 58.757 43.478 0.00 0.00 0.00 3.51
560 596 3.370061 GGTAAAACTCGCATACACTCACC 59.630 47.826 0.00 0.00 0.00 4.02
561 597 2.094762 AAACTCGCATACACTCACCC 57.905 50.000 0.00 0.00 0.00 4.61
562 598 1.267121 AACTCGCATACACTCACCCT 58.733 50.000 0.00 0.00 0.00 4.34
563 599 2.139323 ACTCGCATACACTCACCCTA 57.861 50.000 0.00 0.00 0.00 3.53
564 600 2.667470 ACTCGCATACACTCACCCTAT 58.333 47.619 0.00 0.00 0.00 2.57
565 601 2.362397 ACTCGCATACACTCACCCTATG 59.638 50.000 0.00 0.00 0.00 2.23
566 602 2.623416 CTCGCATACACTCACCCTATGA 59.377 50.000 0.00 0.00 35.45 2.15
567 603 3.028130 TCGCATACACTCACCCTATGAA 58.972 45.455 0.00 0.00 36.69 2.57
568 604 3.123804 CGCATACACTCACCCTATGAAC 58.876 50.000 0.00 0.00 36.69 3.18
569 605 3.123804 GCATACACTCACCCTATGAACG 58.876 50.000 0.00 0.00 36.69 3.95
570 606 2.953466 TACACTCACCCTATGAACGC 57.047 50.000 0.00 0.00 36.69 4.84
571 607 0.973632 ACACTCACCCTATGAACGCA 59.026 50.000 0.00 0.00 36.69 5.24
572 608 1.337823 ACACTCACCCTATGAACGCAC 60.338 52.381 0.00 0.00 36.69 5.34
573 609 0.973632 ACTCACCCTATGAACGCACA 59.026 50.000 0.00 0.00 36.69 4.57
574 610 1.337823 ACTCACCCTATGAACGCACAC 60.338 52.381 0.00 0.00 36.69 3.82
575 611 0.682292 TCACCCTATGAACGCACACA 59.318 50.000 0.00 0.00 33.02 3.72
576 612 0.796312 CACCCTATGAACGCACACAC 59.204 55.000 0.00 0.00 0.00 3.82
577 613 0.669318 ACCCTATGAACGCACACACG 60.669 55.000 0.00 0.00 39.50 4.49
578 614 1.419922 CCTATGAACGCACACACGC 59.580 57.895 0.00 0.00 36.19 5.34
587 623 3.411351 CACACACGCGCACCCTAC 61.411 66.667 5.73 0.00 0.00 3.18
588 624 4.675029 ACACACGCGCACCCTACC 62.675 66.667 5.73 0.00 0.00 3.18
589 625 4.373116 CACACGCGCACCCTACCT 62.373 66.667 5.73 0.00 0.00 3.08
590 626 4.065281 ACACGCGCACCCTACCTC 62.065 66.667 5.73 0.00 0.00 3.85
591 627 3.760035 CACGCGCACCCTACCTCT 61.760 66.667 5.73 0.00 0.00 3.69
592 628 2.044650 ACGCGCACCCTACCTCTA 60.045 61.111 5.73 0.00 0.00 2.43
593 629 1.455217 ACGCGCACCCTACCTCTAT 60.455 57.895 5.73 0.00 0.00 1.98
594 630 1.007271 CGCGCACCCTACCTCTATG 60.007 63.158 8.75 0.00 0.00 2.23
595 631 1.452953 CGCGCACCCTACCTCTATGA 61.453 60.000 8.75 0.00 0.00 2.15
596 632 0.315568 GCGCACCCTACCTCTATGAG 59.684 60.000 0.30 0.00 0.00 2.90
597 633 0.315568 CGCACCCTACCTCTATGAGC 59.684 60.000 0.00 0.00 0.00 4.26
598 634 1.414158 GCACCCTACCTCTATGAGCA 58.586 55.000 0.00 0.00 0.00 4.26
599 635 1.069358 GCACCCTACCTCTATGAGCAC 59.931 57.143 0.00 0.00 0.00 4.40
600 636 1.689273 CACCCTACCTCTATGAGCACC 59.311 57.143 0.00 0.00 0.00 5.01
601 637 1.576272 ACCCTACCTCTATGAGCACCT 59.424 52.381 0.00 0.00 0.00 4.00
602 638 2.243810 CCCTACCTCTATGAGCACCTC 58.756 57.143 0.00 0.00 0.00 3.85
603 639 2.243810 CCTACCTCTATGAGCACCTCC 58.756 57.143 0.00 0.00 0.00 4.30
604 640 2.424957 CCTACCTCTATGAGCACCTCCA 60.425 54.545 0.00 0.00 0.00 3.86
605 641 2.254152 ACCTCTATGAGCACCTCCAA 57.746 50.000 0.00 0.00 0.00 3.53
606 642 2.114616 ACCTCTATGAGCACCTCCAAG 58.885 52.381 0.00 0.00 0.00 3.61
607 643 2.292521 ACCTCTATGAGCACCTCCAAGA 60.293 50.000 0.00 0.00 0.00 3.02
608 644 2.364970 CCTCTATGAGCACCTCCAAGAG 59.635 54.545 11.21 11.21 37.74 2.85
609 645 3.295093 CTCTATGAGCACCTCCAAGAGA 58.705 50.000 12.17 0.00 39.03 3.10
610 646 3.027412 TCTATGAGCACCTCCAAGAGAC 58.973 50.000 0.00 0.00 0.00 3.36
611 647 1.949799 ATGAGCACCTCCAAGAGACT 58.050 50.000 0.00 0.00 0.00 3.24
612 648 0.972134 TGAGCACCTCCAAGAGACTG 59.028 55.000 0.00 0.00 0.00 3.51
613 649 1.261480 GAGCACCTCCAAGAGACTGA 58.739 55.000 0.00 0.00 0.00 3.41
614 650 1.620819 GAGCACCTCCAAGAGACTGAA 59.379 52.381 0.00 0.00 0.00 3.02
615 651 1.622811 AGCACCTCCAAGAGACTGAAG 59.377 52.381 0.00 0.00 0.00 3.02
616 652 1.943507 GCACCTCCAAGAGACTGAAGC 60.944 57.143 0.00 0.00 0.00 3.86
617 653 0.980423 ACCTCCAAGAGACTGAAGCC 59.020 55.000 0.00 0.00 0.00 4.35
618 654 0.108424 CCTCCAAGAGACTGAAGCCG 60.108 60.000 0.00 0.00 0.00 5.52
619 655 0.108424 CTCCAAGAGACTGAAGCCGG 60.108 60.000 0.00 0.00 0.00 6.13
620 656 1.743252 CCAAGAGACTGAAGCCGGC 60.743 63.158 21.89 21.89 0.00 6.13
621 657 1.004560 CAAGAGACTGAAGCCGGCA 60.005 57.895 31.54 7.07 0.00 5.69
622 658 0.392193 CAAGAGACTGAAGCCGGCAT 60.392 55.000 31.54 19.26 0.00 4.40
623 659 1.134699 CAAGAGACTGAAGCCGGCATA 60.135 52.381 31.54 13.36 0.00 3.14
624 660 1.418334 AGAGACTGAAGCCGGCATAT 58.582 50.000 31.54 14.90 0.00 1.78
625 661 1.342819 AGAGACTGAAGCCGGCATATC 59.657 52.381 31.54 23.12 0.00 1.63
626 662 1.069204 GAGACTGAAGCCGGCATATCA 59.931 52.381 31.54 26.28 0.00 2.15
627 663 1.696336 AGACTGAAGCCGGCATATCAT 59.304 47.619 31.54 17.62 0.00 2.45
628 664 2.072298 GACTGAAGCCGGCATATCATC 58.928 52.381 31.54 21.06 0.00 2.92
629 665 1.696336 ACTGAAGCCGGCATATCATCT 59.304 47.619 31.54 13.99 0.00 2.90
630 666 2.105477 ACTGAAGCCGGCATATCATCTT 59.895 45.455 31.54 11.63 0.00 2.40
631 667 2.483106 CTGAAGCCGGCATATCATCTTG 59.517 50.000 31.54 13.36 0.00 3.02
632 668 2.104622 TGAAGCCGGCATATCATCTTGA 59.895 45.455 31.54 1.87 0.00 3.02
633 669 2.469274 AGCCGGCATATCATCTTGAG 57.531 50.000 31.54 0.00 0.00 3.02
634 670 1.973515 AGCCGGCATATCATCTTGAGA 59.026 47.619 31.54 0.00 0.00 3.27
635 671 2.570752 AGCCGGCATATCATCTTGAGAT 59.429 45.455 31.54 0.00 34.56 2.75
636 672 3.008813 AGCCGGCATATCATCTTGAGATT 59.991 43.478 31.54 0.00 31.21 2.40
637 673 3.755378 GCCGGCATATCATCTTGAGATTT 59.245 43.478 24.80 0.00 31.21 2.17
638 674 4.937620 GCCGGCATATCATCTTGAGATTTA 59.062 41.667 24.80 0.00 31.21 1.40
639 675 5.163814 GCCGGCATATCATCTTGAGATTTAC 60.164 44.000 24.80 0.00 31.21 2.01
640 676 5.062683 CCGGCATATCATCTTGAGATTTACG 59.937 44.000 0.00 0.00 31.21 3.18
641 677 5.863935 CGGCATATCATCTTGAGATTTACGA 59.136 40.000 0.00 0.00 31.21 3.43
642 678 6.366061 CGGCATATCATCTTGAGATTTACGAA 59.634 38.462 0.00 0.00 31.21 3.85
643 679 7.411264 CGGCATATCATCTTGAGATTTACGAAG 60.411 40.741 0.00 0.00 31.21 3.79
644 680 7.386299 GGCATATCATCTTGAGATTTACGAAGT 59.614 37.037 0.00 0.00 37.29 3.01
645 681 8.431593 GCATATCATCTTGAGATTTACGAAGTC 58.568 37.037 0.00 0.00 35.39 3.01
646 682 9.468532 CATATCATCTTGAGATTTACGAAGTCA 57.531 33.333 0.00 0.00 35.39 3.41
647 683 7.763172 ATCATCTTGAGATTTACGAAGTCAC 57.237 36.000 0.00 0.00 35.39 3.67
648 684 6.100004 TCATCTTGAGATTTACGAAGTCACC 58.900 40.000 0.00 0.00 35.39 4.02
649 685 5.462530 TCTTGAGATTTACGAAGTCACCA 57.537 39.130 0.00 0.00 43.93 4.17
650 686 6.037786 TCTTGAGATTTACGAAGTCACCAT 57.962 37.500 0.00 0.00 43.93 3.55
651 687 7.165460 TCTTGAGATTTACGAAGTCACCATA 57.835 36.000 0.00 0.00 43.93 2.74
652 688 7.258441 TCTTGAGATTTACGAAGTCACCATAG 58.742 38.462 0.00 0.00 43.93 2.23
653 689 5.902681 TGAGATTTACGAAGTCACCATAGG 58.097 41.667 0.00 0.00 43.93 2.57
654 690 5.421056 TGAGATTTACGAAGTCACCATAGGT 59.579 40.000 0.00 0.00 43.93 3.08
663 699 3.207354 ACCATAGGTGCCTCGTCG 58.793 61.111 0.00 0.00 32.98 5.12
664 700 1.681327 ACCATAGGTGCCTCGTCGT 60.681 57.895 0.00 0.00 32.98 4.34
665 701 1.065928 CCATAGGTGCCTCGTCGTC 59.934 63.158 0.00 0.00 0.00 4.20
666 702 1.298413 CATAGGTGCCTCGTCGTCG 60.298 63.158 0.00 0.00 38.55 5.12
667 703 1.450848 ATAGGTGCCTCGTCGTCGA 60.451 57.895 4.42 4.42 44.12 4.20
668 704 1.712977 ATAGGTGCCTCGTCGTCGAC 61.713 60.000 15.51 15.51 41.35 4.20
685 721 3.998156 CGAGAACGTCTCCTCCCA 58.002 61.111 8.73 0.00 40.34 4.37
686 722 1.507174 CGAGAACGTCTCCTCCCAC 59.493 63.158 8.73 0.00 40.34 4.61
687 723 0.961358 CGAGAACGTCTCCTCCCACT 60.961 60.000 8.73 0.00 40.34 4.00
688 724 0.528470 GAGAACGTCTCCTCCCACTG 59.472 60.000 0.00 0.00 37.55 3.66
689 725 0.112606 AGAACGTCTCCTCCCACTGA 59.887 55.000 0.00 0.00 0.00 3.41
690 726 0.966920 GAACGTCTCCTCCCACTGAA 59.033 55.000 0.00 0.00 0.00 3.02
691 727 1.343465 GAACGTCTCCTCCCACTGAAA 59.657 52.381 0.00 0.00 0.00 2.69
692 728 0.969894 ACGTCTCCTCCCACTGAAAG 59.030 55.000 0.00 0.00 42.29 2.62
693 729 0.390472 CGTCTCCTCCCACTGAAAGC 60.390 60.000 0.00 0.00 37.60 3.51
694 730 0.390472 GTCTCCTCCCACTGAAAGCG 60.390 60.000 0.00 0.00 37.60 4.68
695 731 1.743252 CTCCTCCCACTGAAAGCGC 60.743 63.158 0.00 0.00 37.60 5.92
696 732 2.032528 CCTCCCACTGAAAGCGCA 59.967 61.111 11.47 0.00 37.60 6.09
697 733 1.377725 CCTCCCACTGAAAGCGCAT 60.378 57.895 11.47 0.00 37.60 4.73
698 734 1.372087 CCTCCCACTGAAAGCGCATC 61.372 60.000 11.47 8.39 37.60 3.91
699 735 1.699656 CTCCCACTGAAAGCGCATCG 61.700 60.000 11.47 6.82 37.60 3.84
710 746 2.588877 CGCATCGCCGGAAATCCT 60.589 61.111 5.05 0.00 0.00 3.24
711 747 2.885676 CGCATCGCCGGAAATCCTG 61.886 63.158 5.05 0.00 0.00 3.86
712 748 1.523711 GCATCGCCGGAAATCCTGA 60.524 57.895 5.05 0.00 0.00 3.86
713 749 1.095228 GCATCGCCGGAAATCCTGAA 61.095 55.000 5.05 0.00 0.00 3.02
714 750 1.378531 CATCGCCGGAAATCCTGAAA 58.621 50.000 5.05 0.00 0.00 2.69
715 751 1.949525 CATCGCCGGAAATCCTGAAAT 59.050 47.619 5.05 0.00 0.00 2.17
716 752 2.992124 TCGCCGGAAATCCTGAAATA 57.008 45.000 5.05 0.00 0.00 1.40
717 753 3.269538 TCGCCGGAAATCCTGAAATAA 57.730 42.857 5.05 0.00 0.00 1.40
718 754 3.611970 TCGCCGGAAATCCTGAAATAAA 58.388 40.909 5.05 0.00 0.00 1.40
719 755 4.011023 TCGCCGGAAATCCTGAAATAAAA 58.989 39.130 5.05 0.00 0.00 1.52
720 756 4.642885 TCGCCGGAAATCCTGAAATAAAAT 59.357 37.500 5.05 0.00 0.00 1.82
721 757 4.976116 CGCCGGAAATCCTGAAATAAAATC 59.024 41.667 5.05 0.00 0.00 2.17
722 758 5.449862 CGCCGGAAATCCTGAAATAAAATCA 60.450 40.000 5.05 0.00 0.00 2.57
723 759 5.979517 GCCGGAAATCCTGAAATAAAATCAG 59.020 40.000 5.05 0.00 43.15 2.90
724 760 6.183360 GCCGGAAATCCTGAAATAAAATCAGA 60.183 38.462 5.05 0.00 45.74 3.27
725 761 7.630513 GCCGGAAATCCTGAAATAAAATCAGAA 60.631 37.037 5.05 0.00 45.74 3.02
726 762 8.250332 CCGGAAATCCTGAAATAAAATCAGAAA 58.750 33.333 0.00 0.00 45.74 2.52
727 763 9.807649 CGGAAATCCTGAAATAAAATCAGAAAT 57.192 29.630 5.16 0.00 45.74 2.17
733 769 9.734620 TCCTGAAATAAAATCAGAAATAATGCG 57.265 29.630 5.16 0.00 45.74 4.73
734 770 9.734620 CCTGAAATAAAATCAGAAATAATGCGA 57.265 29.630 5.16 0.00 45.74 5.10
739 775 9.683069 AATAAAATCAGAAATAATGCGATCACC 57.317 29.630 0.00 0.00 0.00 4.02
740 776 6.698008 AAATCAGAAATAATGCGATCACCA 57.302 33.333 0.00 0.00 0.00 4.17
741 777 5.936686 ATCAGAAATAATGCGATCACCAG 57.063 39.130 0.00 0.00 0.00 4.00
742 778 5.022282 TCAGAAATAATGCGATCACCAGA 57.978 39.130 0.00 0.00 0.00 3.86
743 779 5.427378 TCAGAAATAATGCGATCACCAGAA 58.573 37.500 0.00 0.00 0.00 3.02
744 780 6.057533 TCAGAAATAATGCGATCACCAGAAT 58.942 36.000 0.00 0.00 0.00 2.40
745 781 6.543465 TCAGAAATAATGCGATCACCAGAATT 59.457 34.615 0.00 0.00 0.00 2.17
746 782 7.067372 TCAGAAATAATGCGATCACCAGAATTT 59.933 33.333 0.00 0.47 0.00 1.82
747 783 8.344831 CAGAAATAATGCGATCACCAGAATTTA 58.655 33.333 0.00 0.00 0.00 1.40
748 784 8.902806 AGAAATAATGCGATCACCAGAATTTAA 58.097 29.630 0.00 0.00 0.00 1.52
749 785 9.515020 GAAATAATGCGATCACCAGAATTTAAA 57.485 29.630 0.00 0.00 0.00 1.52
750 786 8.856490 AATAATGCGATCACCAGAATTTAAAC 57.144 30.769 0.00 0.00 0.00 2.01
751 787 4.695217 TGCGATCACCAGAATTTAAACC 57.305 40.909 0.00 0.00 0.00 3.27
752 788 3.442273 TGCGATCACCAGAATTTAAACCC 59.558 43.478 0.00 0.00 0.00 4.11
753 789 3.694566 GCGATCACCAGAATTTAAACCCT 59.305 43.478 0.00 0.00 0.00 4.34
754 790 4.879545 GCGATCACCAGAATTTAAACCCTA 59.120 41.667 0.00 0.00 0.00 3.53
755 791 5.007724 GCGATCACCAGAATTTAAACCCTAG 59.992 44.000 0.00 0.00 0.00 3.02
756 792 6.113411 CGATCACCAGAATTTAAACCCTAGT 58.887 40.000 0.00 0.00 0.00 2.57
757 793 6.037172 CGATCACCAGAATTTAAACCCTAGTG 59.963 42.308 9.43 9.43 0.00 2.74
758 794 6.442541 TCACCAGAATTTAAACCCTAGTGA 57.557 37.500 12.50 12.50 0.00 3.41
759 795 6.472887 TCACCAGAATTTAAACCCTAGTGAG 58.527 40.000 12.50 0.00 0.00 3.51
760 796 6.043938 TCACCAGAATTTAAACCCTAGTGAGT 59.956 38.462 12.50 0.00 0.00 3.41
761 797 6.715264 CACCAGAATTTAAACCCTAGTGAGTT 59.285 38.462 9.88 0.00 0.00 3.01
762 798 6.715264 ACCAGAATTTAAACCCTAGTGAGTTG 59.285 38.462 0.00 0.00 0.00 3.16
763 799 6.151144 CCAGAATTTAAACCCTAGTGAGTTGG 59.849 42.308 0.00 0.00 0.00 3.77
764 800 6.151144 CAGAATTTAAACCCTAGTGAGTTGGG 59.849 42.308 5.20 5.20 46.07 4.12
765 801 4.376225 TTTAAACCCTAGTGAGTTGGGG 57.624 45.455 11.47 4.34 44.97 4.96
766 802 2.127651 AAACCCTAGTGAGTTGGGGA 57.872 50.000 11.47 0.00 44.97 4.81
767 803 2.361085 AACCCTAGTGAGTTGGGGAT 57.639 50.000 11.47 0.00 44.97 3.85
768 804 3.502051 AACCCTAGTGAGTTGGGGATA 57.498 47.619 11.47 0.00 44.97 2.59
769 805 2.760581 ACCCTAGTGAGTTGGGGATAC 58.239 52.381 11.47 0.00 44.97 2.24
788 824 7.964604 GGATACCACTATTCACCTAACAATC 57.035 40.000 0.00 0.00 0.00 2.67
789 825 7.736893 GGATACCACTATTCACCTAACAATCT 58.263 38.462 0.00 0.00 0.00 2.40
790 826 7.873505 GGATACCACTATTCACCTAACAATCTC 59.126 40.741 0.00 0.00 0.00 2.75
791 827 6.620877 ACCACTATTCACCTAACAATCTCA 57.379 37.500 0.00 0.00 0.00 3.27
792 828 7.016153 ACCACTATTCACCTAACAATCTCAA 57.984 36.000 0.00 0.00 0.00 3.02
793 829 7.633789 ACCACTATTCACCTAACAATCTCAAT 58.366 34.615 0.00 0.00 0.00 2.57
794 830 7.770897 ACCACTATTCACCTAACAATCTCAATC 59.229 37.037 0.00 0.00 0.00 2.67
795 831 7.770433 CCACTATTCACCTAACAATCTCAATCA 59.230 37.037 0.00 0.00 0.00 2.57
796 832 8.607459 CACTATTCACCTAACAATCTCAATCAC 58.393 37.037 0.00 0.00 0.00 3.06
797 833 8.321353 ACTATTCACCTAACAATCTCAATCACA 58.679 33.333 0.00 0.00 0.00 3.58
798 834 7.621428 ATTCACCTAACAATCTCAATCACAG 57.379 36.000 0.00 0.00 0.00 3.66
799 835 6.358974 TCACCTAACAATCTCAATCACAGA 57.641 37.500 0.00 0.00 0.00 3.41
800 836 6.768483 TCACCTAACAATCTCAATCACAGAA 58.232 36.000 0.00 0.00 0.00 3.02
801 837 7.397221 TCACCTAACAATCTCAATCACAGAAT 58.603 34.615 0.00 0.00 0.00 2.40
802 838 7.335171 TCACCTAACAATCTCAATCACAGAATG 59.665 37.037 0.00 0.00 46.00 2.67
803 839 6.600822 ACCTAACAATCTCAATCACAGAATGG 59.399 38.462 0.00 0.00 43.62 3.16
804 840 6.600822 CCTAACAATCTCAATCACAGAATGGT 59.399 38.462 0.00 0.00 43.62 3.55
805 841 6.906157 AACAATCTCAATCACAGAATGGTT 57.094 33.333 0.00 0.00 43.62 3.67
806 842 9.166173 CTAACAATCTCAATCACAGAATGGTTA 57.834 33.333 0.00 0.00 43.62 2.85
807 843 7.621428 ACAATCTCAATCACAGAATGGTTAG 57.379 36.000 0.00 0.00 43.62 2.34
808 844 6.094603 ACAATCTCAATCACAGAATGGTTAGC 59.905 38.462 0.00 0.00 43.62 3.09
809 845 5.164620 TCTCAATCACAGAATGGTTAGCA 57.835 39.130 0.00 0.00 43.62 3.49
810 846 5.559770 TCTCAATCACAGAATGGTTAGCAA 58.440 37.500 0.00 0.00 43.62 3.91
811 847 6.003326 TCTCAATCACAGAATGGTTAGCAAA 58.997 36.000 0.00 0.00 43.62 3.68
812 848 6.489700 TCTCAATCACAGAATGGTTAGCAAAA 59.510 34.615 0.00 0.00 43.62 2.44
813 849 6.446318 TCAATCACAGAATGGTTAGCAAAAC 58.554 36.000 0.00 0.00 43.62 2.43
814 850 4.481930 TCACAGAATGGTTAGCAAAACG 57.518 40.909 0.00 0.00 43.62 3.60
815 851 3.880490 TCACAGAATGGTTAGCAAAACGT 59.120 39.130 0.00 0.00 43.62 3.99
816 852 4.024387 TCACAGAATGGTTAGCAAAACGTC 60.024 41.667 0.00 0.00 43.62 4.34
817 853 3.880490 ACAGAATGGTTAGCAAAACGTCA 59.120 39.130 0.00 0.00 43.62 4.35
818 854 4.219033 CAGAATGGTTAGCAAAACGTCAC 58.781 43.478 0.00 0.00 0.00 3.67
819 855 2.961522 ATGGTTAGCAAAACGTCACG 57.038 45.000 0.00 0.00 0.00 4.35
820 856 1.654317 TGGTTAGCAAAACGTCACGT 58.346 45.000 0.00 0.00 43.97 4.49
834 870 5.910637 ACGTCACGTTTTTCTAAATAGCA 57.089 34.783 0.00 0.00 36.35 3.49
835 871 6.476243 ACGTCACGTTTTTCTAAATAGCAT 57.524 33.333 0.00 0.00 36.35 3.79
836 872 6.304126 ACGTCACGTTTTTCTAAATAGCATG 58.696 36.000 0.00 0.00 36.35 4.06
837 873 5.225129 CGTCACGTTTTTCTAAATAGCATGC 59.775 40.000 10.51 10.51 0.00 4.06
838 874 6.314784 GTCACGTTTTTCTAAATAGCATGCT 58.685 36.000 25.99 25.99 0.00 3.79
839 875 7.461107 GTCACGTTTTTCTAAATAGCATGCTA 58.539 34.615 28.72 28.72 0.00 3.49
840 876 7.425595 GTCACGTTTTTCTAAATAGCATGCTAC 59.574 37.037 29.11 14.03 0.00 3.58
841 877 7.118535 TCACGTTTTTCTAAATAGCATGCTACA 59.881 33.333 29.11 15.95 0.00 2.74
842 878 7.216317 CACGTTTTTCTAAATAGCATGCTACAC 59.784 37.037 29.11 9.10 0.00 2.90
843 879 6.408039 CGTTTTTCTAAATAGCATGCTACACG 59.592 38.462 29.11 16.80 0.00 4.49
844 880 6.978343 TTTTCTAAATAGCATGCTACACGT 57.022 33.333 29.11 16.18 0.00 4.49
845 881 5.966636 TTCTAAATAGCATGCTACACGTG 57.033 39.130 29.11 15.48 38.41 4.49
846 882 5.006153 TCTAAATAGCATGCTACACGTGT 57.994 39.130 29.11 26.52 37.62 4.49
847 883 4.803613 TCTAAATAGCATGCTACACGTGTG 59.196 41.667 29.11 20.31 37.62 3.82
848 884 2.959507 ATAGCATGCTACACGTGTGA 57.040 45.000 29.11 14.79 37.62 3.58
849 885 2.734276 TAGCATGCTACACGTGTGAA 57.266 45.000 30.83 15.58 37.62 3.18
850 886 1.432514 AGCATGCTACACGTGTGAAG 58.567 50.000 30.83 21.44 37.62 3.02
851 887 0.443869 GCATGCTACACGTGTGAAGG 59.556 55.000 30.83 17.18 37.62 3.46
852 888 1.795768 CATGCTACACGTGTGAAGGT 58.204 50.000 30.83 10.23 0.00 3.50
853 889 2.929161 GCATGCTACACGTGTGAAGGTA 60.929 50.000 30.83 16.61 37.62 3.08
854 890 2.717580 TGCTACACGTGTGAAGGTAG 57.282 50.000 30.83 19.25 37.01 3.18
855 891 1.271379 TGCTACACGTGTGAAGGTAGG 59.729 52.381 30.83 10.90 35.05 3.18
856 892 1.992170 CTACACGTGTGAAGGTAGGC 58.008 55.000 30.83 0.00 31.75 3.93
857 893 0.241749 TACACGTGTGAAGGTAGGCG 59.758 55.000 30.83 0.00 0.00 5.52
858 894 1.736645 CACGTGTGAAGGTAGGCGG 60.737 63.158 7.58 0.00 0.00 6.13
859 895 2.125673 CGTGTGAAGGTAGGCGGG 60.126 66.667 0.00 0.00 0.00 6.13
860 896 2.939261 CGTGTGAAGGTAGGCGGGT 61.939 63.158 0.00 0.00 0.00 5.28
861 897 1.373812 GTGTGAAGGTAGGCGGGTT 59.626 57.895 0.00 0.00 0.00 4.11
862 898 0.953960 GTGTGAAGGTAGGCGGGTTG 60.954 60.000 0.00 0.00 0.00 3.77
863 899 1.376812 GTGAAGGTAGGCGGGTTGG 60.377 63.158 0.00 0.00 0.00 3.77
864 900 1.536907 TGAAGGTAGGCGGGTTGGA 60.537 57.895 0.00 0.00 0.00 3.53
865 901 1.221021 GAAGGTAGGCGGGTTGGAG 59.779 63.158 0.00 0.00 0.00 3.86
866 902 1.538135 AAGGTAGGCGGGTTGGAGT 60.538 57.895 0.00 0.00 0.00 3.85
867 903 1.131928 AAGGTAGGCGGGTTGGAGTT 61.132 55.000 0.00 0.00 0.00 3.01
868 904 1.376812 GGTAGGCGGGTTGGAGTTG 60.377 63.158 0.00 0.00 0.00 3.16
869 905 1.373812 GTAGGCGGGTTGGAGTTGT 59.626 57.895 0.00 0.00 0.00 3.32
870 906 0.250597 GTAGGCGGGTTGGAGTTGTT 60.251 55.000 0.00 0.00 0.00 2.83
871 907 0.250553 TAGGCGGGTTGGAGTTGTTG 60.251 55.000 0.00 0.00 0.00 3.33
872 908 1.826487 GGCGGGTTGGAGTTGTTGT 60.826 57.895 0.00 0.00 0.00 3.32
873 909 1.388837 GGCGGGTTGGAGTTGTTGTT 61.389 55.000 0.00 0.00 0.00 2.83
874 910 0.248866 GCGGGTTGGAGTTGTTGTTG 60.249 55.000 0.00 0.00 0.00 3.33
875 911 1.099689 CGGGTTGGAGTTGTTGTTGT 58.900 50.000 0.00 0.00 0.00 3.32
876 912 1.474879 CGGGTTGGAGTTGTTGTTGTT 59.525 47.619 0.00 0.00 0.00 2.83
877 913 2.094442 CGGGTTGGAGTTGTTGTTGTTT 60.094 45.455 0.00 0.00 0.00 2.83
878 914 3.615351 CGGGTTGGAGTTGTTGTTGTTTT 60.615 43.478 0.00 0.00 0.00 2.43
879 915 3.930229 GGGTTGGAGTTGTTGTTGTTTTC 59.070 43.478 0.00 0.00 0.00 2.29
880 916 4.322424 GGGTTGGAGTTGTTGTTGTTTTCT 60.322 41.667 0.00 0.00 0.00 2.52
881 917 4.625311 GGTTGGAGTTGTTGTTGTTTTCTG 59.375 41.667 0.00 0.00 0.00 3.02
882 918 3.843999 TGGAGTTGTTGTTGTTTTCTGC 58.156 40.909 0.00 0.00 0.00 4.26
883 919 3.509575 TGGAGTTGTTGTTGTTTTCTGCT 59.490 39.130 0.00 0.00 0.00 4.24
884 920 3.859386 GGAGTTGTTGTTGTTTTCTGCTG 59.141 43.478 0.00 0.00 0.00 4.41
885 921 3.253230 AGTTGTTGTTGTTTTCTGCTGC 58.747 40.909 0.00 0.00 0.00 5.25
886 922 2.292103 TGTTGTTGTTTTCTGCTGCC 57.708 45.000 0.00 0.00 0.00 4.85
887 923 1.134848 TGTTGTTGTTTTCTGCTGCCC 60.135 47.619 0.00 0.00 0.00 5.36
888 924 1.136891 GTTGTTGTTTTCTGCTGCCCT 59.863 47.619 0.00 0.00 0.00 5.19
889 925 2.356665 TGTTGTTTTCTGCTGCCCTA 57.643 45.000 0.00 0.00 0.00 3.53
890 926 2.660572 TGTTGTTTTCTGCTGCCCTAA 58.339 42.857 0.00 0.00 0.00 2.69
891 927 3.230134 TGTTGTTTTCTGCTGCCCTAAT 58.770 40.909 0.00 0.00 0.00 1.73
892 928 3.640967 TGTTGTTTTCTGCTGCCCTAATT 59.359 39.130 0.00 0.00 0.00 1.40
893 929 3.940209 TGTTTTCTGCTGCCCTAATTG 57.060 42.857 0.00 0.00 0.00 2.32
894 930 2.562298 TGTTTTCTGCTGCCCTAATTGG 59.438 45.455 0.00 0.00 0.00 3.16
895 931 2.825532 GTTTTCTGCTGCCCTAATTGGA 59.174 45.455 0.00 0.00 38.35 3.53
896 932 3.386932 TTTCTGCTGCCCTAATTGGAT 57.613 42.857 0.00 0.00 38.35 3.41
897 933 3.386932 TTCTGCTGCCCTAATTGGATT 57.613 42.857 0.00 0.00 38.35 3.01
898 934 3.386932 TCTGCTGCCCTAATTGGATTT 57.613 42.857 0.00 0.00 38.35 2.17
899 935 3.711863 TCTGCTGCCCTAATTGGATTTT 58.288 40.909 0.00 0.00 38.35 1.82
900 936 4.095946 TCTGCTGCCCTAATTGGATTTTT 58.904 39.130 0.00 0.00 38.35 1.94
937 973 1.134098 CCTAATTGGATGTCCGCTGGT 60.134 52.381 0.00 0.00 39.43 4.00
960 996 3.016997 CCGTCTATAGTCGGCCTCA 57.983 57.895 22.40 0.00 39.56 3.86
1048 1625 0.472734 CCCCCGAATCCTCCTCATCT 60.473 60.000 0.00 0.00 0.00 2.90
1217 1805 0.390735 GGCGATCTGTTGTACCGGTT 60.391 55.000 15.04 0.00 0.00 4.44
1279 1867 1.455849 CTCTGGGCTGTTGGTTCCA 59.544 57.895 0.00 0.00 0.00 3.53
1357 1945 6.035758 GCTACTGTGTTAATTTAAGAGGGTCG 59.964 42.308 0.00 0.00 0.00 4.79
1724 2461 5.010719 CCATCTAAGCGAACCTATGACCTTA 59.989 44.000 0.00 0.00 0.00 2.69
1725 2462 6.462487 CCATCTAAGCGAACCTATGACCTTAA 60.462 42.308 0.00 0.00 0.00 1.85
2060 2797 7.625828 AACTATGATTTACAACTAACCTGGC 57.374 36.000 0.00 0.00 0.00 4.85
2099 2836 5.343307 ACCTTGCTTGCCTATTTAAATGG 57.657 39.130 11.05 7.76 0.00 3.16
2104 2841 4.702612 TGCTTGCCTATTTAAATGGAACGA 59.297 37.500 12.73 4.26 0.00 3.85
2141 2878 4.989875 AATGCCATGCCTCTAGTATTCT 57.010 40.909 0.00 0.00 0.00 2.40
2154 2891 3.339253 AGTATTCTGCAGTGCATCACA 57.661 42.857 20.10 3.10 38.13 3.58
2241 2980 4.801330 ACTCAGACGTGTATTCCATCAA 57.199 40.909 0.00 0.00 0.00 2.57
2355 3094 6.849085 ATGGAGATCGATAGCTCAATACTT 57.151 37.500 14.16 0.00 32.62 2.24
2482 3221 1.377333 GGCAGAAAGGTAAGCGCCT 60.377 57.895 2.29 0.00 41.41 5.52
2547 3542 3.117663 TGTCACTGCCCTTTCCTAGTTTT 60.118 43.478 0.00 0.00 0.00 2.43
2600 3595 3.889538 GGTATAATTTCCTGCTGAACCCC 59.110 47.826 0.00 0.00 31.05 4.95
2604 3599 0.106419 TTTCCTGCTGAACCCCGTTT 60.106 50.000 0.00 0.00 31.05 3.60
2696 3692 6.451064 GCAAAGGGCACATTAGTTATAACT 57.549 37.500 21.35 21.35 43.97 2.24
2697 3693 6.863275 GCAAAGGGCACATTAGTTATAACTT 58.137 36.000 22.66 3.69 43.97 2.66
2698 3694 7.992008 GCAAAGGGCACATTAGTTATAACTTA 58.008 34.615 22.66 14.66 43.97 2.24
2699 3695 8.630037 GCAAAGGGCACATTAGTTATAACTTAT 58.370 33.333 22.66 16.28 43.97 1.73
3104 4111 6.528537 AAAATATGAACACTAGCATTGGCA 57.471 33.333 0.00 0.00 44.61 4.92
3252 4267 2.663808 TGTGATTGACTGCGCAAATTG 58.336 42.857 13.05 1.26 0.00 2.32
3395 4413 3.512516 GAGGAACAGGCCATGCGC 61.513 66.667 5.01 0.00 0.00 6.09
3790 4808 2.935201 CGAAGCAGGAAGATTCTGAAGG 59.065 50.000 0.00 0.00 40.43 3.46
3799 4817 5.602145 AGGAAGATTCTGAAGGTGATAGGAG 59.398 44.000 0.00 0.00 0.00 3.69
3803 4821 1.937350 TCTGAAGGTGATAGGAGGGGA 59.063 52.381 0.00 0.00 0.00 4.81
3813 4831 1.568118 TAGGAGGGGAAAAAGGCGGG 61.568 60.000 0.00 0.00 0.00 6.13
3976 4994 5.131642 AGAGGAGGCATGATTCTGATTAACA 59.868 40.000 0.00 0.00 0.00 2.41
4133 5154 3.603158 ACACATGTGCAACTACGGATA 57.397 42.857 25.68 0.00 38.04 2.59
4148 5169 4.060038 ACGGATAGAATCGCATGACTTT 57.940 40.909 0.00 0.00 0.00 2.66
4225 5246 4.832248 TGTCTGATGAATTTTAGTCGGCT 58.168 39.130 0.00 0.00 0.00 5.52
4227 5248 4.870426 GTCTGATGAATTTTAGTCGGCTCA 59.130 41.667 0.00 0.00 0.00 4.26
4267 5288 7.228706 CCTTGGTTACTTGTTCAATCAGTTAGT 59.771 37.037 0.00 0.00 0.00 2.24
4399 5422 5.047377 TGACTCAAACCTCTTGCAAGTTTTT 60.047 36.000 25.19 18.29 31.54 1.94
4444 5470 1.526986 CGTGCGTTGTAGCTGCATAAC 60.527 52.381 4.98 0.45 41.23 1.89
4644 7241 4.819105 TGACTTCATGGGTACGATCTTT 57.181 40.909 0.00 0.00 0.00 2.52
4645 7242 5.160607 TGACTTCATGGGTACGATCTTTT 57.839 39.130 0.00 0.00 0.00 2.27
4646 7243 5.175859 TGACTTCATGGGTACGATCTTTTC 58.824 41.667 0.00 0.00 0.00 2.29
4647 7244 5.046591 TGACTTCATGGGTACGATCTTTTCT 60.047 40.000 0.00 0.00 0.00 2.52
4670 7267 1.328374 CAATGATCATCGCTGCGTTCA 59.672 47.619 22.48 18.97 0.00 3.18
4740 7969 8.739039 CAGTTTTCAGATCAATGTACCCATTTA 58.261 33.333 0.00 0.00 39.28 1.40
4810 8039 6.307031 TCGTGATAGAGATTCTAAGAGCAC 57.693 41.667 0.00 0.00 31.96 4.40
4833 8062 3.537874 GCCCCGCGGATAGTGACT 61.538 66.667 30.73 0.00 0.00 3.41
4842 8071 2.418746 GCGGATAGTGACTGGTCATGTT 60.419 50.000 6.71 0.00 42.18 2.71
4867 8096 8.830201 TTCAAATAATCATTTTCACAACTGGG 57.170 30.769 0.00 0.00 31.82 4.45
4884 8113 8.960591 CACAACTGGGTATCTCAAATTAGAAAT 58.039 33.333 0.00 0.00 0.00 2.17
4918 8150 7.148086 CCATACTATTACATGCAACACAAACCT 60.148 37.037 0.00 0.00 0.00 3.50
4922 8154 8.802267 ACTATTACATGCAACACAAACCTAATT 58.198 29.630 0.00 0.00 0.00 1.40
4966 8199 4.388499 GTGTCCATGTCCGGCGGT 62.388 66.667 27.32 3.11 0.00 5.68
4972 8205 3.395702 ATGTCCGGCGGTTGGCTA 61.396 61.111 27.32 1.27 42.94 3.93
5055 8289 2.512974 CCGGATTTAAGGCGCCGT 60.513 61.111 23.20 22.12 42.08 5.68
5062 8296 0.248012 TTTAAGGCGCCGTCATCTCA 59.752 50.000 20.96 0.00 0.00 3.27
5065 8299 2.842394 AAGGCGCCGTCATCTCACAG 62.842 60.000 23.20 0.00 0.00 3.66
5084 8318 0.542333 GGCCCTACTCTTCCTTGTCC 59.458 60.000 0.00 0.00 0.00 4.02
5123 8357 3.001902 GCCGGTGGACGTCAGATCA 62.002 63.158 18.91 2.69 42.24 2.92
5131 8365 2.501316 TGGACGTCAGATCAATGATGGT 59.499 45.455 18.91 1.67 39.97 3.55
5132 8366 3.126831 GGACGTCAGATCAATGATGGTC 58.873 50.000 18.91 8.83 39.97 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 94 2.614057 CAGAAGCAAAACCGTGACTCTT 59.386 45.455 0.00 0.00 0.00 2.85
186 205 2.210116 GAAGCAAAACCGTGACTCTCA 58.790 47.619 0.00 0.00 0.00 3.27
209 228 2.902705 AAGCACAACCGTGACTCTTA 57.097 45.000 0.00 0.00 46.80 2.10
247 266 0.793861 TTTTCGTTTCCGATGAGGCG 59.206 50.000 0.00 0.00 43.80 5.52
275 294 4.065789 ACTCTCGCGGAAGAAAAGAAAAT 58.934 39.130 6.13 0.00 0.00 1.82
355 387 1.096416 AAAACCGAACCGAAAGCACA 58.904 45.000 0.00 0.00 0.00 4.57
444 480 2.024868 CGTTGGATTCCACGCGTCA 61.025 57.895 9.86 0.00 30.78 4.35
451 487 1.243902 GCTTTCACCGTTGGATTCCA 58.756 50.000 0.00 0.00 0.00 3.53
539 575 3.370061 GGGTGAGTGTATGCGAGTTTTAC 59.630 47.826 0.00 0.00 0.00 2.01
540 576 3.259876 AGGGTGAGTGTATGCGAGTTTTA 59.740 43.478 0.00 0.00 0.00 1.52
544 580 2.139323 TAGGGTGAGTGTATGCGAGT 57.861 50.000 0.00 0.00 0.00 4.18
546 582 2.661718 TCATAGGGTGAGTGTATGCGA 58.338 47.619 0.00 0.00 31.80 5.10
548 584 3.123804 CGTTCATAGGGTGAGTGTATGC 58.876 50.000 0.00 0.00 38.29 3.14
549 585 3.123804 GCGTTCATAGGGTGAGTGTATG 58.876 50.000 0.00 0.00 38.29 2.39
550 586 2.764010 TGCGTTCATAGGGTGAGTGTAT 59.236 45.455 0.00 0.00 38.29 2.29
551 587 2.094390 GTGCGTTCATAGGGTGAGTGTA 60.094 50.000 0.00 0.00 38.29 2.90
552 588 0.973632 TGCGTTCATAGGGTGAGTGT 59.026 50.000 0.00 0.00 38.29 3.55
553 589 1.337728 TGTGCGTTCATAGGGTGAGTG 60.338 52.381 0.00 0.00 38.29 3.51
554 590 0.973632 TGTGCGTTCATAGGGTGAGT 59.026 50.000 0.00 0.00 38.29 3.41
555 591 1.337728 TGTGTGCGTTCATAGGGTGAG 60.338 52.381 0.00 0.00 38.29 3.51
556 592 0.682292 TGTGTGCGTTCATAGGGTGA 59.318 50.000 0.00 0.00 34.25 4.02
557 593 0.796312 GTGTGTGCGTTCATAGGGTG 59.204 55.000 0.00 0.00 0.00 4.61
558 594 0.669318 CGTGTGTGCGTTCATAGGGT 60.669 55.000 0.00 0.00 0.00 4.34
559 595 1.966493 GCGTGTGTGCGTTCATAGGG 61.966 60.000 0.00 0.00 0.00 3.53
560 596 1.419922 GCGTGTGTGCGTTCATAGG 59.580 57.895 0.00 0.00 0.00 2.57
570 606 3.411351 GTAGGGTGCGCGTGTGTG 61.411 66.667 8.43 0.00 0.00 3.82
571 607 4.675029 GGTAGGGTGCGCGTGTGT 62.675 66.667 8.43 0.00 0.00 3.72
572 608 4.373116 AGGTAGGGTGCGCGTGTG 62.373 66.667 8.43 0.00 0.00 3.82
573 609 4.065281 GAGGTAGGGTGCGCGTGT 62.065 66.667 8.43 0.00 0.00 4.49
574 610 1.735376 ATAGAGGTAGGGTGCGCGTG 61.735 60.000 8.43 0.00 0.00 5.34
575 611 1.455217 ATAGAGGTAGGGTGCGCGT 60.455 57.895 8.43 0.00 0.00 6.01
576 612 1.007271 CATAGAGGTAGGGTGCGCG 60.007 63.158 0.00 0.00 0.00 6.86
577 613 0.315568 CTCATAGAGGTAGGGTGCGC 59.684 60.000 0.00 0.00 0.00 6.09
578 614 0.315568 GCTCATAGAGGTAGGGTGCG 59.684 60.000 0.00 0.00 0.00 5.34
579 615 1.069358 GTGCTCATAGAGGTAGGGTGC 59.931 57.143 0.00 0.00 0.00 5.01
580 616 1.689273 GGTGCTCATAGAGGTAGGGTG 59.311 57.143 0.00 0.00 0.00 4.61
581 617 1.576272 AGGTGCTCATAGAGGTAGGGT 59.424 52.381 0.00 0.00 0.00 4.34
582 618 2.243810 GAGGTGCTCATAGAGGTAGGG 58.756 57.143 0.00 0.00 0.00 3.53
583 619 2.243810 GGAGGTGCTCATAGAGGTAGG 58.756 57.143 0.00 0.00 31.08 3.18
584 620 2.950781 TGGAGGTGCTCATAGAGGTAG 58.049 52.381 0.00 0.00 31.08 3.18
585 621 3.052869 TCTTGGAGGTGCTCATAGAGGTA 60.053 47.826 0.00 0.00 31.08 3.08
586 622 2.114616 CTTGGAGGTGCTCATAGAGGT 58.885 52.381 0.00 0.00 31.08 3.85
587 623 2.364970 CTCTTGGAGGTGCTCATAGAGG 59.635 54.545 0.00 0.00 36.66 3.69
588 624 3.068024 GTCTCTTGGAGGTGCTCATAGAG 59.932 52.174 0.00 0.00 39.10 2.43
589 625 3.027412 GTCTCTTGGAGGTGCTCATAGA 58.973 50.000 0.00 0.00 31.08 1.98
590 626 3.030291 AGTCTCTTGGAGGTGCTCATAG 58.970 50.000 0.00 0.00 31.08 2.23
591 627 2.762887 CAGTCTCTTGGAGGTGCTCATA 59.237 50.000 0.00 0.00 31.08 2.15
592 628 1.554160 CAGTCTCTTGGAGGTGCTCAT 59.446 52.381 0.00 0.00 31.08 2.90
593 629 0.972134 CAGTCTCTTGGAGGTGCTCA 59.028 55.000 0.00 0.00 31.08 4.26
594 630 1.261480 TCAGTCTCTTGGAGGTGCTC 58.739 55.000 0.00 0.00 0.00 4.26
595 631 1.622811 CTTCAGTCTCTTGGAGGTGCT 59.377 52.381 0.00 0.00 0.00 4.40
596 632 1.943507 GCTTCAGTCTCTTGGAGGTGC 60.944 57.143 0.00 0.00 0.00 5.01
597 633 1.338579 GGCTTCAGTCTCTTGGAGGTG 60.339 57.143 0.00 0.00 0.00 4.00
598 634 0.980423 GGCTTCAGTCTCTTGGAGGT 59.020 55.000 0.00 0.00 0.00 3.85
599 635 0.108424 CGGCTTCAGTCTCTTGGAGG 60.108 60.000 0.00 0.00 0.00 4.30
600 636 0.108424 CCGGCTTCAGTCTCTTGGAG 60.108 60.000 0.00 0.00 0.00 3.86
601 637 1.975327 CCGGCTTCAGTCTCTTGGA 59.025 57.895 0.00 0.00 0.00 3.53
602 638 1.743252 GCCGGCTTCAGTCTCTTGG 60.743 63.158 22.15 0.00 0.00 3.61
603 639 0.392193 ATGCCGGCTTCAGTCTCTTG 60.392 55.000 29.70 0.00 0.00 3.02
604 640 1.195115 TATGCCGGCTTCAGTCTCTT 58.805 50.000 29.70 1.94 0.00 2.85
605 641 1.342819 GATATGCCGGCTTCAGTCTCT 59.657 52.381 29.70 1.40 0.00 3.10
606 642 1.069204 TGATATGCCGGCTTCAGTCTC 59.931 52.381 29.70 14.28 0.00 3.36
607 643 1.123077 TGATATGCCGGCTTCAGTCT 58.877 50.000 29.70 4.90 0.00 3.24
608 644 2.072298 GATGATATGCCGGCTTCAGTC 58.928 52.381 29.70 19.14 0.00 3.51
609 645 1.696336 AGATGATATGCCGGCTTCAGT 59.304 47.619 29.70 15.34 0.00 3.41
610 646 2.469274 AGATGATATGCCGGCTTCAG 57.531 50.000 29.70 0.00 0.00 3.02
611 647 2.104622 TCAAGATGATATGCCGGCTTCA 59.895 45.455 29.70 25.77 0.00 3.02
612 648 2.740981 CTCAAGATGATATGCCGGCTTC 59.259 50.000 29.70 21.11 0.00 3.86
613 649 2.369860 TCTCAAGATGATATGCCGGCTT 59.630 45.455 29.70 24.47 0.00 4.35
614 650 1.973515 TCTCAAGATGATATGCCGGCT 59.026 47.619 29.70 15.76 0.00 5.52
615 651 2.462456 TCTCAAGATGATATGCCGGC 57.538 50.000 22.73 22.73 0.00 6.13
616 652 5.062683 CGTAAATCTCAAGATGATATGCCGG 59.937 44.000 0.00 0.00 34.49 6.13
617 653 5.863935 TCGTAAATCTCAAGATGATATGCCG 59.136 40.000 0.00 0.00 34.49 5.69
618 654 7.386299 ACTTCGTAAATCTCAAGATGATATGCC 59.614 37.037 0.00 0.00 34.49 4.40
619 655 8.304202 ACTTCGTAAATCTCAAGATGATATGC 57.696 34.615 0.00 0.00 34.49 3.14
620 656 9.468532 TGACTTCGTAAATCTCAAGATGATATG 57.531 33.333 0.00 0.00 34.49 1.78
621 657 9.469807 GTGACTTCGTAAATCTCAAGATGATAT 57.530 33.333 0.00 0.00 34.49 1.63
622 658 7.921214 GGTGACTTCGTAAATCTCAAGATGATA 59.079 37.037 0.00 0.00 34.49 2.15
623 659 6.758886 GGTGACTTCGTAAATCTCAAGATGAT 59.241 38.462 0.00 0.00 34.49 2.45
624 660 6.100004 GGTGACTTCGTAAATCTCAAGATGA 58.900 40.000 0.00 0.00 34.49 2.92
625 661 5.869344 TGGTGACTTCGTAAATCTCAAGATG 59.131 40.000 0.00 0.00 34.49 2.90
626 662 6.037786 TGGTGACTTCGTAAATCTCAAGAT 57.962 37.500 0.00 0.00 36.07 2.40
627 663 5.462530 TGGTGACTTCGTAAATCTCAAGA 57.537 39.130 0.00 0.00 0.00 3.02
628 664 6.477033 CCTATGGTGACTTCGTAAATCTCAAG 59.523 42.308 0.00 0.00 0.00 3.02
629 665 6.070995 ACCTATGGTGACTTCGTAAATCTCAA 60.071 38.462 0.00 0.00 32.98 3.02
630 666 5.421056 ACCTATGGTGACTTCGTAAATCTCA 59.579 40.000 0.00 0.00 32.98 3.27
631 667 5.903810 ACCTATGGTGACTTCGTAAATCTC 58.096 41.667 0.00 0.00 32.98 2.75
632 668 5.934402 ACCTATGGTGACTTCGTAAATCT 57.066 39.130 0.00 0.00 32.98 2.40
646 682 1.664321 GACGACGAGGCACCTATGGT 61.664 60.000 0.00 0.00 35.62 3.55
647 683 1.065928 GACGACGAGGCACCTATGG 59.934 63.158 0.00 0.00 0.00 2.74
648 684 1.298413 CGACGACGAGGCACCTATG 60.298 63.158 0.00 0.00 42.66 2.23
649 685 1.450848 TCGACGACGAGGCACCTAT 60.451 57.895 5.75 0.00 43.81 2.57
650 686 2.046988 TCGACGACGAGGCACCTA 60.047 61.111 5.75 0.00 43.81 3.08
668 704 0.961358 AGTGGGAGGAGACGTTCTCG 60.961 60.000 0.00 0.00 44.28 4.04
669 705 0.528470 CAGTGGGAGGAGACGTTCTC 59.472 60.000 0.00 0.00 42.66 2.87
670 706 0.112606 TCAGTGGGAGGAGACGTTCT 59.887 55.000 0.00 0.00 0.00 3.01
671 707 0.966920 TTCAGTGGGAGGAGACGTTC 59.033 55.000 0.00 0.00 0.00 3.95
672 708 1.344763 CTTTCAGTGGGAGGAGACGTT 59.655 52.381 0.00 0.00 0.00 3.99
673 709 0.969894 CTTTCAGTGGGAGGAGACGT 59.030 55.000 0.00 0.00 0.00 4.34
674 710 0.390472 GCTTTCAGTGGGAGGAGACG 60.390 60.000 0.00 0.00 0.00 4.18
675 711 0.390472 CGCTTTCAGTGGGAGGAGAC 60.390 60.000 0.00 0.00 0.00 3.36
676 712 1.975327 CGCTTTCAGTGGGAGGAGA 59.025 57.895 0.00 0.00 0.00 3.71
677 713 1.743252 GCGCTTTCAGTGGGAGGAG 60.743 63.158 0.00 0.00 0.00 3.69
678 714 1.841302 ATGCGCTTTCAGTGGGAGGA 61.841 55.000 9.73 0.00 0.00 3.71
679 715 1.372087 GATGCGCTTTCAGTGGGAGG 61.372 60.000 9.73 0.00 0.00 4.30
680 716 1.699656 CGATGCGCTTTCAGTGGGAG 61.700 60.000 9.73 0.00 0.00 4.30
681 717 1.741401 CGATGCGCTTTCAGTGGGA 60.741 57.895 9.73 0.00 0.00 4.37
682 718 2.787249 CGATGCGCTTTCAGTGGG 59.213 61.111 9.73 0.00 0.00 4.61
693 729 2.588877 AGGATTTCCGGCGATGCG 60.589 61.111 9.30 0.00 42.08 4.73
694 730 1.095228 TTCAGGATTTCCGGCGATGC 61.095 55.000 9.30 0.00 42.08 3.91
695 731 1.378531 TTTCAGGATTTCCGGCGATG 58.621 50.000 9.30 0.00 42.08 3.84
696 732 2.348411 ATTTCAGGATTTCCGGCGAT 57.652 45.000 9.30 0.00 42.08 4.58
697 733 2.992124 TATTTCAGGATTTCCGGCGA 57.008 45.000 9.30 0.00 42.08 5.54
698 734 4.364415 TTTTATTTCAGGATTTCCGGCG 57.636 40.909 0.00 0.00 42.08 6.46
699 735 5.901552 TGATTTTATTTCAGGATTTCCGGC 58.098 37.500 0.00 0.00 42.08 6.13
700 736 7.333528 TCTGATTTTATTTCAGGATTTCCGG 57.666 36.000 0.00 0.00 40.80 5.14
701 737 9.807649 ATTTCTGATTTTATTTCAGGATTTCCG 57.192 29.630 1.23 0.00 40.80 4.30
707 743 9.734620 CGCATTATTTCTGATTTTATTTCAGGA 57.265 29.630 1.23 0.00 40.80 3.86
708 744 9.734620 TCGCATTATTTCTGATTTTATTTCAGG 57.265 29.630 1.23 0.00 40.80 3.86
713 749 9.683069 GGTGATCGCATTATTTCTGATTTTATT 57.317 29.630 8.82 0.00 0.00 1.40
714 750 8.849168 TGGTGATCGCATTATTTCTGATTTTAT 58.151 29.630 8.82 0.00 0.00 1.40
715 751 8.219546 TGGTGATCGCATTATTTCTGATTTTA 57.780 30.769 8.82 0.00 0.00 1.52
716 752 7.067372 TCTGGTGATCGCATTATTTCTGATTTT 59.933 33.333 8.82 0.00 0.00 1.82
717 753 6.543465 TCTGGTGATCGCATTATTTCTGATTT 59.457 34.615 8.82 0.00 0.00 2.17
718 754 6.057533 TCTGGTGATCGCATTATTTCTGATT 58.942 36.000 8.82 0.00 0.00 2.57
719 755 5.614308 TCTGGTGATCGCATTATTTCTGAT 58.386 37.500 8.82 0.00 0.00 2.90
720 756 5.022282 TCTGGTGATCGCATTATTTCTGA 57.978 39.130 8.82 0.00 0.00 3.27
721 757 5.739752 TTCTGGTGATCGCATTATTTCTG 57.260 39.130 8.82 0.00 0.00 3.02
722 758 6.949352 AATTCTGGTGATCGCATTATTTCT 57.051 33.333 8.82 0.00 0.00 2.52
723 759 9.515020 TTTAAATTCTGGTGATCGCATTATTTC 57.485 29.630 8.82 0.00 0.00 2.17
724 760 9.301153 GTTTAAATTCTGGTGATCGCATTATTT 57.699 29.630 8.82 9.95 0.00 1.40
725 761 7.920682 GGTTTAAATTCTGGTGATCGCATTATT 59.079 33.333 8.82 0.00 0.00 1.40
726 762 7.425606 GGTTTAAATTCTGGTGATCGCATTAT 58.574 34.615 8.82 0.00 0.00 1.28
727 763 6.183360 GGGTTTAAATTCTGGTGATCGCATTA 60.183 38.462 8.82 0.00 0.00 1.90
728 764 5.394115 GGGTTTAAATTCTGGTGATCGCATT 60.394 40.000 8.82 0.00 0.00 3.56
729 765 4.097892 GGGTTTAAATTCTGGTGATCGCAT 59.902 41.667 8.82 0.00 0.00 4.73
730 766 3.442273 GGGTTTAAATTCTGGTGATCGCA 59.558 43.478 8.82 0.00 0.00 5.10
731 767 3.694566 AGGGTTTAAATTCTGGTGATCGC 59.305 43.478 0.00 0.00 0.00 4.58
732 768 6.037172 CACTAGGGTTTAAATTCTGGTGATCG 59.963 42.308 21.42 5.38 39.87 3.69
733 769 7.110155 TCACTAGGGTTTAAATTCTGGTGATC 58.890 38.462 23.07 0.00 40.85 2.92
734 770 7.027874 TCACTAGGGTTTAAATTCTGGTGAT 57.972 36.000 23.07 0.78 40.85 3.06
735 771 6.043938 ACTCACTAGGGTTTAAATTCTGGTGA 59.956 38.462 24.19 24.19 42.53 4.02
736 772 6.238648 ACTCACTAGGGTTTAAATTCTGGTG 58.761 40.000 20.63 20.63 39.17 4.17
737 773 6.449830 ACTCACTAGGGTTTAAATTCTGGT 57.550 37.500 0.00 0.00 0.00 4.00
738 774 6.151144 CCAACTCACTAGGGTTTAAATTCTGG 59.849 42.308 0.00 0.00 0.00 3.86
739 775 6.151144 CCCAACTCACTAGGGTTTAAATTCTG 59.849 42.308 0.00 0.00 37.81 3.02
740 776 6.246163 CCCAACTCACTAGGGTTTAAATTCT 58.754 40.000 0.00 0.00 37.81 2.40
741 777 5.417894 CCCCAACTCACTAGGGTTTAAATTC 59.582 44.000 0.00 0.00 41.16 2.17
742 778 5.075344 TCCCCAACTCACTAGGGTTTAAATT 59.925 40.000 0.00 0.00 41.16 1.82
743 779 4.604490 TCCCCAACTCACTAGGGTTTAAAT 59.396 41.667 0.00 0.00 41.16 1.40
744 780 3.982052 TCCCCAACTCACTAGGGTTTAAA 59.018 43.478 0.00 0.00 41.16 1.52
745 781 3.600433 TCCCCAACTCACTAGGGTTTAA 58.400 45.455 0.00 0.00 41.16 1.52
746 782 3.278987 TCCCCAACTCACTAGGGTTTA 57.721 47.619 0.00 0.00 41.16 2.01
747 783 2.127651 TCCCCAACTCACTAGGGTTT 57.872 50.000 0.00 0.00 41.16 3.27
748 784 2.361085 ATCCCCAACTCACTAGGGTT 57.639 50.000 0.00 0.00 41.16 4.11
749 785 2.628829 GGTATCCCCAACTCACTAGGGT 60.629 54.545 0.00 0.00 41.16 4.34
750 786 2.047830 GGTATCCCCAACTCACTAGGG 58.952 57.143 0.00 0.00 42.44 3.53
751 787 2.759355 TGGTATCCCCAACTCACTAGG 58.241 52.381 0.00 0.00 41.50 3.02
761 797 3.431411 AGGTGAATAGTGGTATCCCCA 57.569 47.619 0.00 0.00 42.51 4.96
762 798 4.657039 TGTTAGGTGAATAGTGGTATCCCC 59.343 45.833 0.00 0.00 0.00 4.81
763 799 5.881923 TGTTAGGTGAATAGTGGTATCCC 57.118 43.478 0.00 0.00 0.00 3.85
764 800 7.736893 AGATTGTTAGGTGAATAGTGGTATCC 58.263 38.462 0.00 0.00 0.00 2.59
765 801 8.421784 TGAGATTGTTAGGTGAATAGTGGTATC 58.578 37.037 0.00 0.00 0.00 2.24
766 802 8.319057 TGAGATTGTTAGGTGAATAGTGGTAT 57.681 34.615 0.00 0.00 0.00 2.73
767 803 7.727578 TGAGATTGTTAGGTGAATAGTGGTA 57.272 36.000 0.00 0.00 0.00 3.25
768 804 6.620877 TGAGATTGTTAGGTGAATAGTGGT 57.379 37.500 0.00 0.00 0.00 4.16
769 805 7.770433 TGATTGAGATTGTTAGGTGAATAGTGG 59.230 37.037 0.00 0.00 0.00 4.00
770 806 8.607459 GTGATTGAGATTGTTAGGTGAATAGTG 58.393 37.037 0.00 0.00 0.00 2.74
771 807 8.321353 TGTGATTGAGATTGTTAGGTGAATAGT 58.679 33.333 0.00 0.00 0.00 2.12
772 808 8.722480 TGTGATTGAGATTGTTAGGTGAATAG 57.278 34.615 0.00 0.00 0.00 1.73
773 809 8.539544 TCTGTGATTGAGATTGTTAGGTGAATA 58.460 33.333 0.00 0.00 0.00 1.75
774 810 7.397221 TCTGTGATTGAGATTGTTAGGTGAAT 58.603 34.615 0.00 0.00 0.00 2.57
775 811 6.768483 TCTGTGATTGAGATTGTTAGGTGAA 58.232 36.000 0.00 0.00 0.00 3.18
776 812 6.358974 TCTGTGATTGAGATTGTTAGGTGA 57.641 37.500 0.00 0.00 0.00 4.02
777 813 7.414873 CCATTCTGTGATTGAGATTGTTAGGTG 60.415 40.741 0.00 0.00 0.00 4.00
778 814 6.600822 CCATTCTGTGATTGAGATTGTTAGGT 59.399 38.462 0.00 0.00 0.00 3.08
779 815 6.600822 ACCATTCTGTGATTGAGATTGTTAGG 59.399 38.462 0.00 0.00 0.00 2.69
780 816 7.621428 ACCATTCTGTGATTGAGATTGTTAG 57.379 36.000 0.00 0.00 0.00 2.34
781 817 9.166173 CTAACCATTCTGTGATTGAGATTGTTA 57.834 33.333 0.00 0.00 0.00 2.41
782 818 6.906157 AACCATTCTGTGATTGAGATTGTT 57.094 33.333 0.00 0.00 0.00 2.83
783 819 6.094603 GCTAACCATTCTGTGATTGAGATTGT 59.905 38.462 0.00 0.00 0.00 2.71
784 820 6.094464 TGCTAACCATTCTGTGATTGAGATTG 59.906 38.462 0.00 0.00 0.00 2.67
785 821 6.182627 TGCTAACCATTCTGTGATTGAGATT 58.817 36.000 0.00 0.00 0.00 2.40
786 822 5.748402 TGCTAACCATTCTGTGATTGAGAT 58.252 37.500 0.00 0.00 0.00 2.75
787 823 5.164620 TGCTAACCATTCTGTGATTGAGA 57.835 39.130 0.00 0.00 0.00 3.27
788 824 5.885230 TTGCTAACCATTCTGTGATTGAG 57.115 39.130 0.00 0.00 0.00 3.02
789 825 6.446318 GTTTTGCTAACCATTCTGTGATTGA 58.554 36.000 0.00 0.00 0.00 2.57
790 826 5.343058 CGTTTTGCTAACCATTCTGTGATTG 59.657 40.000 0.00 0.00 0.00 2.67
791 827 5.009610 ACGTTTTGCTAACCATTCTGTGATT 59.990 36.000 0.00 0.00 0.00 2.57
792 828 4.518970 ACGTTTTGCTAACCATTCTGTGAT 59.481 37.500 0.00 0.00 0.00 3.06
793 829 3.880490 ACGTTTTGCTAACCATTCTGTGA 59.120 39.130 0.00 0.00 0.00 3.58
794 830 4.219033 GACGTTTTGCTAACCATTCTGTG 58.781 43.478 0.00 0.00 0.00 3.66
795 831 3.880490 TGACGTTTTGCTAACCATTCTGT 59.120 39.130 0.00 0.00 0.00 3.41
796 832 4.219033 GTGACGTTTTGCTAACCATTCTG 58.781 43.478 0.00 0.00 0.00 3.02
797 833 3.059188 CGTGACGTTTTGCTAACCATTCT 60.059 43.478 0.00 0.00 0.00 2.40
798 834 3.223157 CGTGACGTTTTGCTAACCATTC 58.777 45.455 0.00 0.00 0.00 2.67
799 835 2.614983 ACGTGACGTTTTGCTAACCATT 59.385 40.909 4.10 0.00 36.35 3.16
800 836 2.215196 ACGTGACGTTTTGCTAACCAT 58.785 42.857 4.10 0.00 36.35 3.55
801 837 1.654317 ACGTGACGTTTTGCTAACCA 58.346 45.000 4.10 0.00 36.35 3.67
812 848 5.910637 TGCTATTTAGAAAAACGTGACGT 57.089 34.783 4.10 4.10 43.97 4.34
813 849 5.225129 GCATGCTATTTAGAAAAACGTGACG 59.775 40.000 11.37 2.24 0.00 4.35
814 850 6.314784 AGCATGCTATTTAGAAAAACGTGAC 58.685 36.000 21.21 0.00 0.00 3.67
815 851 6.494893 AGCATGCTATTTAGAAAAACGTGA 57.505 33.333 21.21 0.00 0.00 4.35
816 852 7.216317 GTGTAGCATGCTATTTAGAAAAACGTG 59.784 37.037 29.17 0.00 0.00 4.49
817 853 7.241376 GTGTAGCATGCTATTTAGAAAAACGT 58.759 34.615 29.17 0.23 0.00 3.99
818 854 6.408039 CGTGTAGCATGCTATTTAGAAAAACG 59.592 38.462 29.17 18.97 0.00 3.60
819 855 7.216317 CACGTGTAGCATGCTATTTAGAAAAAC 59.784 37.037 29.17 15.71 0.00 2.43
820 856 7.094975 ACACGTGTAGCATGCTATTTAGAAAAA 60.095 33.333 29.17 2.80 0.00 1.94
821 857 6.370442 ACACGTGTAGCATGCTATTTAGAAAA 59.630 34.615 29.17 3.62 0.00 2.29
822 858 5.872617 ACACGTGTAGCATGCTATTTAGAAA 59.127 36.000 29.17 4.42 0.00 2.52
823 859 5.290885 CACACGTGTAGCATGCTATTTAGAA 59.709 40.000 29.17 5.24 0.00 2.10
824 860 4.803613 CACACGTGTAGCATGCTATTTAGA 59.196 41.667 29.17 6.06 0.00 2.10
825 861 4.803613 TCACACGTGTAGCATGCTATTTAG 59.196 41.667 29.17 21.32 0.00 1.85
826 862 4.749976 TCACACGTGTAGCATGCTATTTA 58.250 39.130 29.17 16.28 0.00 1.40
827 863 3.595173 TCACACGTGTAGCATGCTATTT 58.405 40.909 29.17 11.84 0.00 1.40
828 864 3.245518 TCACACGTGTAGCATGCTATT 57.754 42.857 29.17 12.18 0.00 1.73
829 865 2.959507 TCACACGTGTAGCATGCTAT 57.040 45.000 29.17 11.64 0.00 2.97
830 866 2.606108 CTTCACACGTGTAGCATGCTA 58.394 47.619 23.52 23.52 0.00 3.49
831 867 1.432514 CTTCACACGTGTAGCATGCT 58.567 50.000 25.99 25.99 0.00 3.79
832 868 0.443869 CCTTCACACGTGTAGCATGC 59.556 55.000 22.90 10.51 0.00 4.06
833 869 1.795768 ACCTTCACACGTGTAGCATG 58.204 50.000 22.90 8.95 0.00 4.06
834 870 2.094182 CCTACCTTCACACGTGTAGCAT 60.094 50.000 22.90 9.44 31.46 3.79
835 871 1.271379 CCTACCTTCACACGTGTAGCA 59.729 52.381 22.90 5.40 31.46 3.49
836 872 1.992170 CCTACCTTCACACGTGTAGC 58.008 55.000 22.90 0.00 31.46 3.58
837 873 1.731424 CGCCTACCTTCACACGTGTAG 60.731 57.143 22.90 16.10 0.00 2.74
838 874 0.241749 CGCCTACCTTCACACGTGTA 59.758 55.000 22.90 5.85 0.00 2.90
839 875 1.006571 CGCCTACCTTCACACGTGT 60.007 57.895 17.22 17.22 0.00 4.49
840 876 1.736645 CCGCCTACCTTCACACGTG 60.737 63.158 15.48 15.48 0.00 4.49
841 877 2.654877 CCGCCTACCTTCACACGT 59.345 61.111 0.00 0.00 0.00 4.49
842 878 2.125673 CCCGCCTACCTTCACACG 60.126 66.667 0.00 0.00 0.00 4.49
843 879 0.953960 CAACCCGCCTACCTTCACAC 60.954 60.000 0.00 0.00 0.00 3.82
844 880 1.373435 CAACCCGCCTACCTTCACA 59.627 57.895 0.00 0.00 0.00 3.58
845 881 1.376812 CCAACCCGCCTACCTTCAC 60.377 63.158 0.00 0.00 0.00 3.18
846 882 1.536907 TCCAACCCGCCTACCTTCA 60.537 57.895 0.00 0.00 0.00 3.02
847 883 1.221021 CTCCAACCCGCCTACCTTC 59.779 63.158 0.00 0.00 0.00 3.46
848 884 1.131928 AACTCCAACCCGCCTACCTT 61.132 55.000 0.00 0.00 0.00 3.50
849 885 1.538135 AACTCCAACCCGCCTACCT 60.538 57.895 0.00 0.00 0.00 3.08
850 886 1.376812 CAACTCCAACCCGCCTACC 60.377 63.158 0.00 0.00 0.00 3.18
851 887 0.250597 AACAACTCCAACCCGCCTAC 60.251 55.000 0.00 0.00 0.00 3.18
852 888 0.250553 CAACAACTCCAACCCGCCTA 60.251 55.000 0.00 0.00 0.00 3.93
853 889 1.528309 CAACAACTCCAACCCGCCT 60.528 57.895 0.00 0.00 0.00 5.52
854 890 1.388837 AACAACAACTCCAACCCGCC 61.389 55.000 0.00 0.00 0.00 6.13
855 891 0.248866 CAACAACAACTCCAACCCGC 60.249 55.000 0.00 0.00 0.00 6.13
856 892 1.099689 ACAACAACAACTCCAACCCG 58.900 50.000 0.00 0.00 0.00 5.28
857 893 3.603158 AAACAACAACAACTCCAACCC 57.397 42.857 0.00 0.00 0.00 4.11
858 894 4.625311 CAGAAAACAACAACAACTCCAACC 59.375 41.667 0.00 0.00 0.00 3.77
859 895 4.091365 GCAGAAAACAACAACAACTCCAAC 59.909 41.667 0.00 0.00 0.00 3.77
860 896 4.021544 AGCAGAAAACAACAACAACTCCAA 60.022 37.500 0.00 0.00 0.00 3.53
861 897 3.509575 AGCAGAAAACAACAACAACTCCA 59.490 39.130 0.00 0.00 0.00 3.86
862 898 3.859386 CAGCAGAAAACAACAACAACTCC 59.141 43.478 0.00 0.00 0.00 3.85
863 899 3.304293 GCAGCAGAAAACAACAACAACTC 59.696 43.478 0.00 0.00 0.00 3.01
864 900 3.253230 GCAGCAGAAAACAACAACAACT 58.747 40.909 0.00 0.00 0.00 3.16
865 901 2.348362 GGCAGCAGAAAACAACAACAAC 59.652 45.455 0.00 0.00 0.00 3.32
866 902 2.615869 GGCAGCAGAAAACAACAACAA 58.384 42.857 0.00 0.00 0.00 2.83
867 903 1.134848 GGGCAGCAGAAAACAACAACA 60.135 47.619 0.00 0.00 0.00 3.33
868 904 1.136891 AGGGCAGCAGAAAACAACAAC 59.863 47.619 0.00 0.00 0.00 3.32
869 905 1.484038 AGGGCAGCAGAAAACAACAA 58.516 45.000 0.00 0.00 0.00 2.83
870 906 2.356665 TAGGGCAGCAGAAAACAACA 57.643 45.000 0.00 0.00 0.00 3.33
871 907 3.942130 ATTAGGGCAGCAGAAAACAAC 57.058 42.857 0.00 0.00 0.00 3.32
872 908 3.006752 CCAATTAGGGCAGCAGAAAACAA 59.993 43.478 0.00 0.00 0.00 2.83
873 909 2.562298 CCAATTAGGGCAGCAGAAAACA 59.438 45.455 0.00 0.00 0.00 2.83
874 910 2.825532 TCCAATTAGGGCAGCAGAAAAC 59.174 45.455 0.00 0.00 38.24 2.43
875 911 3.168035 TCCAATTAGGGCAGCAGAAAA 57.832 42.857 0.00 0.00 38.24 2.29
876 912 2.897271 TCCAATTAGGGCAGCAGAAA 57.103 45.000 0.00 0.00 38.24 2.52
877 913 3.386932 AATCCAATTAGGGCAGCAGAA 57.613 42.857 0.00 0.00 38.24 3.02
878 914 3.386932 AAATCCAATTAGGGCAGCAGA 57.613 42.857 0.00 0.00 38.24 4.26
879 915 4.476628 AAAAATCCAATTAGGGCAGCAG 57.523 40.909 0.00 0.00 38.24 4.24
900 936 3.869481 GGCAGCACCCCTCAAAAA 58.131 55.556 0.00 0.00 0.00 1.94
909 945 1.035139 CATCCAATTAGGGCAGCACC 58.965 55.000 0.00 0.00 38.24 5.01
910 946 1.678101 GACATCCAATTAGGGCAGCAC 59.322 52.381 0.00 0.00 38.24 4.40
911 947 1.410083 GGACATCCAATTAGGGCAGCA 60.410 52.381 0.00 0.00 38.24 4.41
912 948 1.322442 GGACATCCAATTAGGGCAGC 58.678 55.000 0.00 0.00 38.24 5.25
913 949 1.597742 CGGACATCCAATTAGGGCAG 58.402 55.000 0.00 0.00 38.24 4.85
914 950 0.465460 GCGGACATCCAATTAGGGCA 60.465 55.000 0.00 0.00 38.24 5.36
915 951 0.179018 AGCGGACATCCAATTAGGGC 60.179 55.000 0.00 0.00 38.24 5.19
916 952 1.597742 CAGCGGACATCCAATTAGGG 58.402 55.000 0.00 0.00 38.24 3.53
960 996 1.761174 CCGTTATATGGGCTGGGCT 59.239 57.895 0.00 0.00 0.00 5.19
1056 1633 2.358957 TCGACGACGATAAGAGGGAAA 58.641 47.619 5.75 0.00 43.81 3.13
1058 1635 3.766644 TCGACGACGATAAGAGGGA 57.233 52.632 5.75 0.00 43.81 4.20
1141 1727 1.990563 CCGCGTCGTCAGAAAGTTAAT 59.009 47.619 4.92 0.00 0.00 1.40
1217 1805 0.034863 GAACAGGCCGTTTGGGGATA 60.035 55.000 13.03 0.00 38.19 2.59
1229 1817 1.222113 GCAGGGTAGGAGAACAGGC 59.778 63.158 0.00 0.00 0.00 4.85
1349 1937 4.979657 TCTACATCGCGACCCTCT 57.020 55.556 12.93 0.00 0.00 3.69
1951 2688 2.358003 ACAGGCAGAAGCGCAGAC 60.358 61.111 11.47 0.00 43.41 3.51
1954 2691 2.203195 AACACAGGCAGAAGCGCA 60.203 55.556 11.47 0.00 43.41 6.09
2037 2774 6.717289 TGCCAGGTTAGTTGTAAATCATAGT 58.283 36.000 0.00 0.00 0.00 2.12
2060 2797 5.470098 AGCAAGGTACAACTAGTTGACAATG 59.530 40.000 36.14 26.90 42.93 2.82
2099 2836 9.952341 GGCATTAAAACTTTATTTCAATCGTTC 57.048 29.630 0.00 0.00 0.00 3.95
2104 2841 8.676401 GGCATGGCATTAAAACTTTATTTCAAT 58.324 29.630 15.47 0.00 0.00 2.57
2547 3542 7.986320 AACATGAGGTTTTGAATCAAATTCACA 59.014 29.630 9.41 9.57 39.41 3.58
2600 3595 3.944422 AGTAGTTCACAAGTGCAAACG 57.056 42.857 0.00 0.00 0.00 3.60
2604 3599 6.183360 CGCATATTAAGTAGTTCACAAGTGCA 60.183 38.462 0.00 0.00 0.00 4.57
2699 3695 9.412460 AGCAATGTGGATTCTTTGAGATTATTA 57.588 29.630 0.00 0.00 0.00 0.98
2700 3696 8.302515 AGCAATGTGGATTCTTTGAGATTATT 57.697 30.769 0.00 0.00 0.00 1.40
2701 3697 7.778853 AGAGCAATGTGGATTCTTTGAGATTAT 59.221 33.333 0.00 0.00 0.00 1.28
3252 4267 8.768955 CCAGAGTGTCAATATTATAAAGCAGAC 58.231 37.037 0.00 0.00 0.00 3.51
3395 4413 1.078848 AGCTAAGCCAAGTGCCTCG 60.079 57.895 0.00 0.00 42.71 4.63
3790 4808 2.656002 GCCTTTTTCCCCTCCTATCAC 58.344 52.381 0.00 0.00 0.00 3.06
3803 4821 1.971695 CTCTTCGCCCCGCCTTTTT 60.972 57.895 0.00 0.00 0.00 1.94
3813 4831 2.131067 CCCCTCTCCTCTCTTCGCC 61.131 68.421 0.00 0.00 0.00 5.54
3976 4994 2.030262 GCGCTGCTAGCCTGCTAT 59.970 61.111 21.86 0.00 38.18 2.97
4018 5036 5.069318 TCCAAGTCATGAAACATGCAAGTA 58.931 37.500 0.00 0.00 0.00 2.24
4019 5037 3.890756 TCCAAGTCATGAAACATGCAAGT 59.109 39.130 0.00 0.00 0.00 3.16
4020 5038 4.508461 TCCAAGTCATGAAACATGCAAG 57.492 40.909 0.00 0.00 0.00 4.01
4075 5096 3.246226 GCACGGTATAGACAGCAGAATTG 59.754 47.826 0.00 0.00 0.00 2.32
4133 5154 3.610114 GCACAACAAAGTCATGCGATTCT 60.610 43.478 0.00 0.00 0.00 2.40
4148 5169 3.286353 TCAATCTTCAACAGGCACAACA 58.714 40.909 0.00 0.00 0.00 3.33
4267 5288 2.429930 CACCCGGGCAGAACTTCA 59.570 61.111 24.08 0.00 0.00 3.02
4423 5446 0.389296 TATGCAGCTACAACGCACGT 60.389 50.000 0.00 0.00 38.73 4.49
4473 7052 9.487442 AAATAACCCACAACAATGAAGGTATAT 57.513 29.630 0.00 0.00 35.41 0.86
4478 7057 9.500785 AAATAAAATAACCCACAACAATGAAGG 57.499 29.630 0.00 0.00 0.00 3.46
4511 7107 6.266168 TGTCATGTAAAAATAGCCCACAAG 57.734 37.500 0.00 0.00 0.00 3.16
4640 7237 5.064325 CAGCGATGATCATTGTCAGAAAAGA 59.936 40.000 21.57 0.00 0.00 2.52
4641 7238 5.263948 CAGCGATGATCATTGTCAGAAAAG 58.736 41.667 21.57 2.89 0.00 2.27
4642 7239 4.437794 GCAGCGATGATCATTGTCAGAAAA 60.438 41.667 21.57 0.00 0.00 2.29
4643 7240 3.064408 GCAGCGATGATCATTGTCAGAAA 59.936 43.478 21.57 0.00 0.00 2.52
4644 7241 2.610833 GCAGCGATGATCATTGTCAGAA 59.389 45.455 21.57 0.00 0.00 3.02
4645 7242 2.207590 GCAGCGATGATCATTGTCAGA 58.792 47.619 21.57 0.00 0.00 3.27
4646 7243 1.070776 CGCAGCGATGATCATTGTCAG 60.071 52.381 21.57 13.58 0.00 3.51
4647 7244 0.932399 CGCAGCGATGATCATTGTCA 59.068 50.000 21.57 0.00 0.00 3.58
4670 7267 6.351626 GGAATCATGGCTTTCTCAGGAAATTT 60.352 38.462 0.00 0.00 40.19 1.82
4740 7969 1.888512 ACGGCAATGCTTGAAGAACAT 59.111 42.857 4.82 0.00 0.00 2.71
4758 7987 1.751351 TCCACTGGAGAAGCTCATACG 59.249 52.381 0.00 0.00 31.08 3.06
4810 8039 2.915659 TATCCGCGGGGCTGTAGG 60.916 66.667 27.83 0.00 0.00 3.18
4833 8062 9.993454 TGAAAATGATTATTTGAAACATGACCA 57.007 25.926 0.00 0.00 36.65 4.02
4842 8071 8.428063 ACCCAGTTGTGAAAATGATTATTTGAA 58.572 29.630 0.00 0.00 36.65 2.69
4884 8113 9.056005 GTTGCATGTAATAGTATGGATTTGAGA 57.944 33.333 0.00 0.00 0.00 3.27
4918 8150 4.178540 CGGACGAGCTCCACTTAAAATTA 58.821 43.478 8.47 0.00 39.39 1.40
4922 8154 0.245539 CCGGACGAGCTCCACTTAAA 59.754 55.000 8.47 0.00 39.39 1.52
4945 8177 4.386951 CCGGACATGGACACGGCA 62.387 66.667 0.00 0.00 39.85 5.69
4952 8184 4.402528 CCAACCGCCGGACATGGA 62.403 66.667 11.71 0.00 32.82 3.41
5038 8271 2.512974 ACGGCGCCTTAAATCCGG 60.513 61.111 26.68 7.84 45.58 5.14
5043 8277 0.248012 TGAGATGACGGCGCCTTAAA 59.752 50.000 26.68 7.64 0.00 1.52
5045 8279 1.141019 GTGAGATGACGGCGCCTTA 59.859 57.895 26.68 10.95 0.00 2.69
5055 8289 1.289231 AGAGTAGGGCCTGTGAGATGA 59.711 52.381 18.53 0.00 0.00 2.92
5062 8296 1.280457 CAAGGAAGAGTAGGGCCTGT 58.720 55.000 18.53 2.38 0.00 4.00
5065 8299 0.542333 GGACAAGGAAGAGTAGGGCC 59.458 60.000 0.00 0.00 0.00 5.80
5084 8318 4.452733 GTCAGGGTTCCGGGCTCG 62.453 72.222 0.00 0.00 0.00 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.