Multiple sequence alignment - TraesCS7A01G279100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G279100 chr7A 100.000 4448 0 0 1 4448 296591767 296587320 0.000000e+00 8215
1 TraesCS7A01G279100 chr7A 95.152 495 21 2 1 493 296597220 296596727 0.000000e+00 778
2 TraesCS7A01G279100 chr7A 83.430 519 66 12 1 509 634878927 634878419 8.710000e-127 464
3 TraesCS7A01G279100 chr7D 94.476 3512 90 29 745 4216 269051196 269047749 0.000000e+00 5315
4 TraesCS7A01G279100 chr7B 95.685 3036 81 14 947 3954 272718272 272721285 0.000000e+00 4835
5 TraesCS7A01G279100 chr7B 92.459 305 20 2 581 885 272691250 272691551 2.460000e-117 433
6 TraesCS7A01G279100 chr5A 86.448 487 60 3 1 486 32986480 32985999 3.050000e-146 529
7 TraesCS7A01G279100 chr3B 84.211 494 61 7 1 486 633293154 633292670 8.710000e-127 464
8 TraesCS7A01G279100 chr5B 77.236 246 35 18 3615 3854 273070318 273070088 1.680000e-24 124
9 TraesCS7A01G279100 chr6B 91.892 74 6 0 3781 3854 73597391 73597318 2.190000e-18 104


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G279100 chr7A 296587320 296591767 4447 True 8215 8215 100.000 1 4448 1 chr7A.!!$R1 4447
1 TraesCS7A01G279100 chr7A 634878419 634878927 508 True 464 464 83.430 1 509 1 chr7A.!!$R3 508
2 TraesCS7A01G279100 chr7D 269047749 269051196 3447 True 5315 5315 94.476 745 4216 1 chr7D.!!$R1 3471
3 TraesCS7A01G279100 chr7B 272718272 272721285 3013 False 4835 4835 95.685 947 3954 1 chr7B.!!$F2 3007


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
257 259 0.034477 AATTGGGTAAGGAGTGCCGG 60.034 55.000 0.0 0.0 39.96 6.13 F
762 764 0.035056 CCGGCTGAAGAGGTTCCAAT 60.035 55.000 0.0 0.0 0.00 3.16 F
878 880 0.462225 TGTCGTTGCCGTCCTTTTCA 60.462 50.000 0.0 0.0 35.01 2.69 F
1777 1821 0.322816 AACACCCGCTTGCTGATGAT 60.323 50.000 0.0 0.0 0.00 2.45 F
2735 2786 2.330216 AGTCTAGTGCCCTGTTCAGTT 58.670 47.619 0.0 0.0 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1580 1624 0.030504 CACCGCACATGCTTTTCACA 59.969 50.0 1.82 0.00 39.32 3.58 R
1777 1821 0.179084 GGAAATCGTCCTCATCCGCA 60.179 55.0 0.00 0.00 43.98 5.69 R
2695 2746 1.838112 TGGATCTTTGCACATCCACC 58.162 50.0 14.61 3.32 43.11 4.61 R
3126 3178 0.678395 AAAAATGCGATGCCACCACA 59.322 45.0 0.00 0.00 0.00 4.17 R
4152 4216 0.033504 ATCACACGACGGACAAAGCT 59.966 50.0 0.00 0.00 0.00 3.74 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
200 202 4.124351 CAACGGCTGCAGCATGGG 62.124 66.667 37.63 24.92 44.36 4.00
205 207 3.446570 GCTGCAGCATGGGGTGTC 61.447 66.667 33.36 0.00 44.31 3.67
206 208 3.129502 CTGCAGCATGGGGTGTCG 61.130 66.667 0.00 0.00 44.31 4.35
209 211 3.129502 CAGCATGGGGTGTCGCTG 61.130 66.667 0.00 0.00 45.17 5.18
210 212 4.415150 AGCATGGGGTGTCGCTGG 62.415 66.667 0.00 0.00 32.33 4.85
216 218 4.814294 GGGTGTCGCTGGCGGTAG 62.814 72.222 14.94 0.00 40.25 3.18
217 219 3.755628 GGTGTCGCTGGCGGTAGA 61.756 66.667 14.94 0.00 40.25 2.59
218 220 2.260434 GTGTCGCTGGCGGTAGAA 59.740 61.111 14.94 0.00 40.25 2.10
219 221 2.092882 GTGTCGCTGGCGGTAGAAC 61.093 63.158 14.94 6.03 40.25 3.01
220 222 2.879462 GTCGCTGGCGGTAGAACG 60.879 66.667 14.94 0.00 40.25 3.95
228 230 2.813908 CGGTAGAACGCCACAGGC 60.814 66.667 0.00 0.00 46.75 4.85
249 251 4.373551 GGGGGCAATTGGGTAAGG 57.626 61.111 7.72 0.00 0.00 2.69
250 252 1.700985 GGGGGCAATTGGGTAAGGA 59.299 57.895 7.72 0.00 0.00 3.36
251 253 0.397114 GGGGGCAATTGGGTAAGGAG 60.397 60.000 7.72 0.00 0.00 3.69
252 254 0.335019 GGGGCAATTGGGTAAGGAGT 59.665 55.000 7.72 0.00 0.00 3.85
253 255 1.474330 GGGCAATTGGGTAAGGAGTG 58.526 55.000 7.72 0.00 0.00 3.51
254 256 0.817654 GGCAATTGGGTAAGGAGTGC 59.182 55.000 7.72 0.00 0.00 4.40
255 257 0.817654 GCAATTGGGTAAGGAGTGCC 59.182 55.000 7.72 0.00 0.00 5.01
256 258 1.094785 CAATTGGGTAAGGAGTGCCG 58.905 55.000 0.00 0.00 39.96 5.69
257 259 0.034477 AATTGGGTAAGGAGTGCCGG 60.034 55.000 0.00 0.00 39.96 6.13
258 260 2.552231 ATTGGGTAAGGAGTGCCGGC 62.552 60.000 22.73 22.73 39.96 6.13
259 261 3.712907 GGGTAAGGAGTGCCGGCA 61.713 66.667 29.03 29.03 39.96 5.69
260 262 2.125106 GGTAAGGAGTGCCGGCAG 60.125 66.667 33.73 0.00 39.96 4.85
261 263 2.125106 GTAAGGAGTGCCGGCAGG 60.125 66.667 33.73 0.00 39.96 4.85
262 264 3.399181 TAAGGAGTGCCGGCAGGG 61.399 66.667 33.73 0.00 39.96 4.45
264 266 2.808761 TAAGGAGTGCCGGCAGGGTA 62.809 60.000 33.73 15.03 39.96 3.69
265 267 4.162690 GGAGTGCCGGCAGGGTAG 62.163 72.222 33.73 0.00 38.44 3.18
266 268 4.162690 GAGTGCCGGCAGGGTAGG 62.163 72.222 33.73 0.00 38.44 3.18
321 323 4.803426 CTCGCGACAGAGGGTGGC 62.803 72.222 3.71 0.00 46.51 5.01
341 343 3.842923 CGCGCTGGAGGTGGAGAT 61.843 66.667 5.56 0.00 0.00 2.75
342 344 2.202987 GCGCTGGAGGTGGAGATG 60.203 66.667 0.00 0.00 0.00 2.90
343 345 2.202987 CGCTGGAGGTGGAGATGC 60.203 66.667 0.00 0.00 0.00 3.91
344 346 2.202987 GCTGGAGGTGGAGATGCG 60.203 66.667 0.00 0.00 0.00 4.73
345 347 2.725312 GCTGGAGGTGGAGATGCGA 61.725 63.158 0.00 0.00 0.00 5.10
346 348 2.037620 GCTGGAGGTGGAGATGCGAT 62.038 60.000 0.00 0.00 0.00 4.58
347 349 0.467384 CTGGAGGTGGAGATGCGATT 59.533 55.000 0.00 0.00 0.00 3.34
348 350 0.178767 TGGAGGTGGAGATGCGATTG 59.821 55.000 0.00 0.00 0.00 2.67
349 351 0.533755 GGAGGTGGAGATGCGATTGG 60.534 60.000 0.00 0.00 0.00 3.16
350 352 0.533755 GAGGTGGAGATGCGATTGGG 60.534 60.000 0.00 0.00 0.00 4.12
351 353 0.982852 AGGTGGAGATGCGATTGGGA 60.983 55.000 0.00 0.00 0.00 4.37
352 354 0.533755 GGTGGAGATGCGATTGGGAG 60.534 60.000 0.00 0.00 0.00 4.30
353 355 0.179000 GTGGAGATGCGATTGGGAGT 59.821 55.000 0.00 0.00 0.00 3.85
354 356 0.911769 TGGAGATGCGATTGGGAGTT 59.088 50.000 0.00 0.00 0.00 3.01
355 357 1.281867 TGGAGATGCGATTGGGAGTTT 59.718 47.619 0.00 0.00 0.00 2.66
356 358 2.290896 TGGAGATGCGATTGGGAGTTTT 60.291 45.455 0.00 0.00 0.00 2.43
357 359 3.054728 TGGAGATGCGATTGGGAGTTTTA 60.055 43.478 0.00 0.00 0.00 1.52
358 360 4.137543 GGAGATGCGATTGGGAGTTTTAT 58.862 43.478 0.00 0.00 0.00 1.40
359 361 4.580580 GGAGATGCGATTGGGAGTTTTATT 59.419 41.667 0.00 0.00 0.00 1.40
360 362 5.067805 GGAGATGCGATTGGGAGTTTTATTT 59.932 40.000 0.00 0.00 0.00 1.40
361 363 6.405842 GGAGATGCGATTGGGAGTTTTATTTT 60.406 38.462 0.00 0.00 0.00 1.82
362 364 6.935167 AGATGCGATTGGGAGTTTTATTTTT 58.065 32.000 0.00 0.00 0.00 1.94
363 365 7.035612 AGATGCGATTGGGAGTTTTATTTTTC 58.964 34.615 0.00 0.00 0.00 2.29
364 366 6.339587 TGCGATTGGGAGTTTTATTTTTCT 57.660 33.333 0.00 0.00 0.00 2.52
365 367 7.455641 TGCGATTGGGAGTTTTATTTTTCTA 57.544 32.000 0.00 0.00 0.00 2.10
366 368 8.062065 TGCGATTGGGAGTTTTATTTTTCTAT 57.938 30.769 0.00 0.00 0.00 1.98
367 369 8.188139 TGCGATTGGGAGTTTTATTTTTCTATC 58.812 33.333 0.00 0.00 0.00 2.08
368 370 7.376072 GCGATTGGGAGTTTTATTTTTCTATCG 59.624 37.037 0.00 0.00 33.75 2.92
369 371 7.376072 CGATTGGGAGTTTTATTTTTCTATCGC 59.624 37.037 0.00 0.00 0.00 4.58
370 372 7.696992 TTGGGAGTTTTATTTTTCTATCGCT 57.303 32.000 0.00 0.00 0.00 4.93
371 373 7.316544 TGGGAGTTTTATTTTTCTATCGCTC 57.683 36.000 0.00 0.00 0.00 5.03
372 374 6.036735 TGGGAGTTTTATTTTTCTATCGCTCG 59.963 38.462 0.00 0.00 0.00 5.03
373 375 6.036844 GGGAGTTTTATTTTTCTATCGCTCGT 59.963 38.462 0.00 0.00 0.00 4.18
374 376 6.900299 GGAGTTTTATTTTTCTATCGCTCGTG 59.100 38.462 0.00 0.00 0.00 4.35
375 377 6.772078 AGTTTTATTTTTCTATCGCTCGTGG 58.228 36.000 0.00 0.00 0.00 4.94
376 378 4.789095 TTATTTTTCTATCGCTCGTGGC 57.211 40.909 0.00 0.00 37.64 5.01
377 379 2.380084 TTTTTCTATCGCTCGTGGCT 57.620 45.000 2.32 0.00 39.13 4.75
378 380 3.513680 TTTTTCTATCGCTCGTGGCTA 57.486 42.857 2.32 0.00 39.13 3.93
379 381 3.728076 TTTTCTATCGCTCGTGGCTAT 57.272 42.857 2.32 0.01 39.13 2.97
380 382 3.728076 TTTCTATCGCTCGTGGCTATT 57.272 42.857 2.32 0.00 39.13 1.73
381 383 2.991434 TCTATCGCTCGTGGCTATTC 57.009 50.000 2.32 0.00 39.13 1.75
382 384 1.197036 TCTATCGCTCGTGGCTATTCG 59.803 52.381 2.32 0.00 39.13 3.34
383 385 0.386858 TATCGCTCGTGGCTATTCGC 60.387 55.000 2.32 0.00 39.13 4.70
384 386 3.682315 CGCTCGTGGCTATTCGCG 61.682 66.667 0.00 0.00 40.44 5.87
385 387 2.582498 GCTCGTGGCTATTCGCGT 60.582 61.111 5.77 0.00 40.93 6.01
386 388 2.165301 GCTCGTGGCTATTCGCGTT 61.165 57.895 5.77 0.00 40.93 4.84
387 389 1.631072 CTCGTGGCTATTCGCGTTG 59.369 57.895 5.77 0.00 40.93 4.10
388 390 0.800683 CTCGTGGCTATTCGCGTTGA 60.801 55.000 5.77 0.00 40.93 3.18
389 391 1.074319 TCGTGGCTATTCGCGTTGAC 61.074 55.000 5.77 0.00 40.93 3.18
390 392 1.076533 CGTGGCTATTCGCGTTGACT 61.077 55.000 5.77 0.00 40.44 3.41
391 393 1.076332 GTGGCTATTCGCGTTGACTT 58.924 50.000 5.77 0.00 40.44 3.01
392 394 1.075542 TGGCTATTCGCGTTGACTTG 58.924 50.000 5.77 0.00 40.44 3.16
393 395 1.337354 TGGCTATTCGCGTTGACTTGA 60.337 47.619 5.77 0.00 40.44 3.02
394 396 1.933853 GGCTATTCGCGTTGACTTGAT 59.066 47.619 5.77 0.00 40.44 2.57
395 397 2.033662 GGCTATTCGCGTTGACTTGATC 60.034 50.000 5.77 0.00 40.44 2.92
396 398 2.346741 GCTATTCGCGTTGACTTGATCG 60.347 50.000 5.77 0.00 0.00 3.69
397 399 0.999406 ATTCGCGTTGACTTGATCGG 59.001 50.000 5.77 0.00 0.00 4.18
398 400 0.038983 TTCGCGTTGACTTGATCGGA 60.039 50.000 5.77 0.00 0.00 4.55
399 401 0.731514 TCGCGTTGACTTGATCGGAC 60.732 55.000 5.77 0.00 0.00 4.79
400 402 0.732880 CGCGTTGACTTGATCGGACT 60.733 55.000 0.00 0.00 0.00 3.85
401 403 0.716108 GCGTTGACTTGATCGGACTG 59.284 55.000 0.00 0.00 0.00 3.51
402 404 0.716108 CGTTGACTTGATCGGACTGC 59.284 55.000 0.00 0.00 0.00 4.40
403 405 0.716108 GTTGACTTGATCGGACTGCG 59.284 55.000 0.00 0.00 0.00 5.18
404 406 0.601057 TTGACTTGATCGGACTGCGA 59.399 50.000 0.00 0.00 0.00 5.10
405 407 0.171231 TGACTTGATCGGACTGCGAG 59.829 55.000 0.00 0.00 0.00 5.03
406 408 0.171455 GACTTGATCGGACTGCGAGT 59.829 55.000 0.00 0.00 0.00 4.18
407 409 0.603569 ACTTGATCGGACTGCGAGTT 59.396 50.000 0.00 0.00 0.00 3.01
408 410 1.000955 ACTTGATCGGACTGCGAGTTT 59.999 47.619 0.00 0.00 0.00 2.66
409 411 2.230508 ACTTGATCGGACTGCGAGTTTA 59.769 45.455 0.00 0.00 0.00 2.01
410 412 3.119101 ACTTGATCGGACTGCGAGTTTAT 60.119 43.478 0.00 0.00 0.00 1.40
411 413 3.520290 TGATCGGACTGCGAGTTTATT 57.480 42.857 0.00 0.00 0.00 1.40
412 414 3.444916 TGATCGGACTGCGAGTTTATTC 58.555 45.455 0.00 0.00 0.00 1.75
413 415 2.288961 TCGGACTGCGAGTTTATTCC 57.711 50.000 0.00 0.00 0.00 3.01
414 416 1.822990 TCGGACTGCGAGTTTATTCCT 59.177 47.619 0.00 0.00 0.00 3.36
415 417 3.018856 TCGGACTGCGAGTTTATTCCTA 58.981 45.455 0.00 0.00 0.00 2.94
416 418 3.635373 TCGGACTGCGAGTTTATTCCTAT 59.365 43.478 0.00 0.00 0.00 2.57
417 419 4.823442 TCGGACTGCGAGTTTATTCCTATA 59.177 41.667 0.00 0.00 0.00 1.31
418 420 5.300034 TCGGACTGCGAGTTTATTCCTATAA 59.700 40.000 0.00 0.00 0.00 0.98
419 421 5.981315 CGGACTGCGAGTTTATTCCTATAAA 59.019 40.000 0.00 0.00 34.61 1.40
435 437 9.769677 ATTCCTATAAACTTTAAGGGCTTTTCT 57.230 29.630 0.00 0.00 0.00 2.52
436 438 8.575649 TCCTATAAACTTTAAGGGCTTTTCTG 57.424 34.615 0.00 0.00 0.00 3.02
437 439 7.614192 TCCTATAAACTTTAAGGGCTTTTCTGG 59.386 37.037 0.00 0.00 0.00 3.86
438 440 7.614192 CCTATAAACTTTAAGGGCTTTTCTGGA 59.386 37.037 0.00 0.00 0.00 3.86
439 441 7.849322 ATAAACTTTAAGGGCTTTTCTGGAA 57.151 32.000 0.00 0.00 0.00 3.53
440 442 6.553953 AAACTTTAAGGGCTTTTCTGGAAA 57.446 33.333 0.00 0.00 0.00 3.13
441 443 6.553953 AACTTTAAGGGCTTTTCTGGAAAA 57.446 33.333 8.03 8.03 37.90 2.29
442 444 6.553953 ACTTTAAGGGCTTTTCTGGAAAAA 57.446 33.333 9.35 0.00 39.49 1.94
443 445 7.136822 ACTTTAAGGGCTTTTCTGGAAAAAT 57.863 32.000 9.35 0.00 39.49 1.82
444 446 8.257602 ACTTTAAGGGCTTTTCTGGAAAAATA 57.742 30.769 9.35 0.00 39.49 1.40
445 447 8.148351 ACTTTAAGGGCTTTTCTGGAAAAATAC 58.852 33.333 9.35 3.39 39.49 1.89
446 448 7.849322 TTAAGGGCTTTTCTGGAAAAATACT 57.151 32.000 9.35 5.42 39.49 2.12
447 449 8.943594 TTAAGGGCTTTTCTGGAAAAATACTA 57.056 30.769 9.35 0.00 39.49 1.82
448 450 7.849322 AAGGGCTTTTCTGGAAAAATACTAA 57.151 32.000 9.35 0.00 39.49 2.24
449 451 8.435931 AAGGGCTTTTCTGGAAAAATACTAAT 57.564 30.769 9.35 0.00 39.49 1.73
450 452 7.840931 AGGGCTTTTCTGGAAAAATACTAATG 58.159 34.615 9.35 0.00 39.49 1.90
451 453 7.673926 AGGGCTTTTCTGGAAAAATACTAATGA 59.326 33.333 9.35 0.00 39.49 2.57
452 454 8.478066 GGGCTTTTCTGGAAAAATACTAATGAT 58.522 33.333 9.35 0.00 39.49 2.45
453 455 9.305925 GGCTTTTCTGGAAAAATACTAATGATG 57.694 33.333 9.35 0.00 39.49 3.07
454 456 9.305925 GCTTTTCTGGAAAAATACTAATGATGG 57.694 33.333 9.35 0.00 39.49 3.51
457 459 7.786178 TCTGGAAAAATACTAATGATGGACG 57.214 36.000 0.00 0.00 0.00 4.79
458 460 7.561251 TCTGGAAAAATACTAATGATGGACGA 58.439 34.615 0.00 0.00 0.00 4.20
459 461 8.210946 TCTGGAAAAATACTAATGATGGACGAT 58.789 33.333 0.00 0.00 0.00 3.73
460 462 8.378172 TGGAAAAATACTAATGATGGACGATC 57.622 34.615 0.00 0.00 0.00 3.69
461 463 7.990314 TGGAAAAATACTAATGATGGACGATCA 59.010 33.333 2.37 2.37 45.43 2.92
462 464 8.499162 GGAAAAATACTAATGATGGACGATCAG 58.501 37.037 6.31 0.00 44.54 2.90
463 465 9.261180 GAAAAATACTAATGATGGACGATCAGA 57.739 33.333 6.31 0.00 44.54 3.27
464 466 9.613428 AAAAATACTAATGATGGACGATCAGAA 57.387 29.630 6.31 0.00 44.54 3.02
465 467 9.613428 AAAATACTAATGATGGACGATCAGAAA 57.387 29.630 6.31 0.00 44.54 2.52
466 468 8.594881 AATACTAATGATGGACGATCAGAAAC 57.405 34.615 6.31 0.00 44.54 2.78
467 469 5.977635 ACTAATGATGGACGATCAGAAACA 58.022 37.500 6.31 0.00 44.54 2.83
468 470 6.406370 ACTAATGATGGACGATCAGAAACAA 58.594 36.000 6.31 0.00 44.54 2.83
469 471 7.050377 ACTAATGATGGACGATCAGAAACAAT 58.950 34.615 6.31 0.00 44.54 2.71
470 472 8.204160 ACTAATGATGGACGATCAGAAACAATA 58.796 33.333 6.31 0.00 44.54 1.90
471 473 7.864108 AATGATGGACGATCAGAAACAATAA 57.136 32.000 6.31 0.00 44.54 1.40
472 474 6.662414 TGATGGACGATCAGAAACAATAAC 57.338 37.500 0.00 0.00 36.06 1.89
473 475 5.584649 TGATGGACGATCAGAAACAATAACC 59.415 40.000 0.00 0.00 36.06 2.85
474 476 3.930229 TGGACGATCAGAAACAATAACCG 59.070 43.478 0.00 0.00 0.00 4.44
475 477 3.242316 GGACGATCAGAAACAATAACCGC 60.242 47.826 0.00 0.00 0.00 5.68
476 478 3.596214 ACGATCAGAAACAATAACCGCT 58.404 40.909 0.00 0.00 0.00 5.52
477 479 4.000988 ACGATCAGAAACAATAACCGCTT 58.999 39.130 0.00 0.00 0.00 4.68
478 480 4.454504 ACGATCAGAAACAATAACCGCTTT 59.545 37.500 0.00 0.00 0.00 3.51
479 481 5.640357 ACGATCAGAAACAATAACCGCTTTA 59.360 36.000 0.00 0.00 0.00 1.85
480 482 6.315393 ACGATCAGAAACAATAACCGCTTTAT 59.685 34.615 0.00 0.00 31.07 1.40
481 483 7.148306 ACGATCAGAAACAATAACCGCTTTATT 60.148 33.333 0.00 0.00 40.47 1.40
482 484 8.332464 CGATCAGAAACAATAACCGCTTTATTA 58.668 33.333 0.00 0.00 38.17 0.98
577 579 9.676129 ATGTAGGGAGAGATTAGAATTAGGAAA 57.324 33.333 0.00 0.00 0.00 3.13
578 580 9.502035 TGTAGGGAGAGATTAGAATTAGGAAAA 57.498 33.333 0.00 0.00 0.00 2.29
579 581 9.990360 GTAGGGAGAGATTAGAATTAGGAAAAG 57.010 37.037 0.00 0.00 0.00 2.27
580 582 8.862091 AGGGAGAGATTAGAATTAGGAAAAGA 57.138 34.615 0.00 0.00 0.00 2.52
581 583 9.459094 AGGGAGAGATTAGAATTAGGAAAAGAT 57.541 33.333 0.00 0.00 0.00 2.40
612 614 9.622004 ACTATGTAATCCGTTCGATAATGTAAG 57.378 33.333 0.00 0.00 0.00 2.34
613 615 9.836076 CTATGTAATCCGTTCGATAATGTAAGA 57.164 33.333 0.00 0.00 0.00 2.10
615 617 9.706691 ATGTAATCCGTTCGATAATGTAAGAAT 57.293 29.630 0.00 0.00 0.00 2.40
616 618 9.188588 TGTAATCCGTTCGATAATGTAAGAATC 57.811 33.333 0.00 0.00 0.00 2.52
617 619 7.653767 AATCCGTTCGATAATGTAAGAATCC 57.346 36.000 0.00 0.00 0.00 3.01
618 620 6.401047 TCCGTTCGATAATGTAAGAATCCT 57.599 37.500 0.00 0.00 0.00 3.24
619 621 6.812998 TCCGTTCGATAATGTAAGAATCCTT 58.187 36.000 0.00 0.00 36.43 3.36
620 622 7.270047 TCCGTTCGATAATGTAAGAATCCTTT 58.730 34.615 0.00 0.00 33.94 3.11
621 623 7.767198 TCCGTTCGATAATGTAAGAATCCTTTT 59.233 33.333 0.00 0.00 33.94 2.27
622 624 7.850982 CCGTTCGATAATGTAAGAATCCTTTTG 59.149 37.037 0.00 0.00 33.94 2.44
623 625 7.850982 CGTTCGATAATGTAAGAATCCTTTTGG 59.149 37.037 0.00 0.00 42.21 3.28
624 626 8.674607 GTTCGATAATGTAAGAATCCTTTTGGT 58.325 33.333 0.00 0.00 41.38 3.67
625 627 9.893634 TTCGATAATGTAAGAATCCTTTTGGTA 57.106 29.630 0.00 0.00 41.38 3.25
630 632 8.877864 AATGTAAGAATCCTTTTGGTATGTGA 57.122 30.769 0.00 0.00 41.38 3.58
631 633 9.479549 AATGTAAGAATCCTTTTGGTATGTGAT 57.520 29.630 0.00 0.00 41.38 3.06
632 634 8.279970 TGTAAGAATCCTTTTGGTATGTGATG 57.720 34.615 0.00 0.00 41.38 3.07
633 635 8.106462 TGTAAGAATCCTTTTGGTATGTGATGA 58.894 33.333 0.00 0.00 41.38 2.92
634 636 8.956426 GTAAGAATCCTTTTGGTATGTGATGAA 58.044 33.333 0.00 0.00 41.38 2.57
635 637 7.396540 AGAATCCTTTTGGTATGTGATGAAC 57.603 36.000 0.00 0.00 41.38 3.18
636 638 7.177878 AGAATCCTTTTGGTATGTGATGAACT 58.822 34.615 0.00 0.00 41.38 3.01
637 639 7.337942 AGAATCCTTTTGGTATGTGATGAACTC 59.662 37.037 0.00 0.00 41.38 3.01
638 640 4.935205 TCCTTTTGGTATGTGATGAACTCG 59.065 41.667 0.00 0.00 41.38 4.18
639 641 4.695455 CCTTTTGGTATGTGATGAACTCGT 59.305 41.667 0.00 0.00 34.07 4.18
640 642 5.163854 CCTTTTGGTATGTGATGAACTCGTC 60.164 44.000 0.00 0.00 34.07 4.20
641 643 4.801330 TTGGTATGTGATGAACTCGTCT 57.199 40.909 0.89 0.00 33.19 4.18
642 644 4.801330 TGGTATGTGATGAACTCGTCTT 57.199 40.909 0.89 0.00 33.19 3.01
643 645 4.744570 TGGTATGTGATGAACTCGTCTTC 58.255 43.478 0.89 0.00 33.19 2.87
644 646 3.791887 GGTATGTGATGAACTCGTCTTCG 59.208 47.826 0.89 0.00 33.95 3.79
645 647 3.577649 ATGTGATGAACTCGTCTTCGT 57.422 42.857 0.89 0.00 38.33 3.85
646 648 3.364889 TGTGATGAACTCGTCTTCGTT 57.635 42.857 0.89 0.00 38.33 3.85
647 649 3.713288 TGTGATGAACTCGTCTTCGTTT 58.287 40.909 0.89 0.00 38.33 3.60
648 650 3.489416 TGTGATGAACTCGTCTTCGTTTG 59.511 43.478 0.89 0.00 38.33 2.93
649 651 3.489785 GTGATGAACTCGTCTTCGTTTGT 59.510 43.478 0.89 0.00 38.33 2.83
650 652 3.489416 TGATGAACTCGTCTTCGTTTGTG 59.511 43.478 0.89 0.00 38.33 3.33
651 653 3.153676 TGAACTCGTCTTCGTTTGTGA 57.846 42.857 0.00 0.00 38.33 3.58
652 654 3.713288 TGAACTCGTCTTCGTTTGTGAT 58.287 40.909 0.00 0.00 38.33 3.06
653 655 3.489416 TGAACTCGTCTTCGTTTGTGATG 59.511 43.478 0.00 0.00 38.33 3.07
654 656 3.364889 ACTCGTCTTCGTTTGTGATGA 57.635 42.857 0.00 0.00 38.33 2.92
655 657 3.914312 ACTCGTCTTCGTTTGTGATGAT 58.086 40.909 0.00 0.00 38.33 2.45
656 658 3.921021 ACTCGTCTTCGTTTGTGATGATC 59.079 43.478 0.00 0.00 38.33 2.92
657 659 4.169508 CTCGTCTTCGTTTGTGATGATCT 58.830 43.478 0.00 0.00 38.33 2.75
658 660 4.166523 TCGTCTTCGTTTGTGATGATCTC 58.833 43.478 0.00 0.00 38.33 2.75
659 661 3.920412 CGTCTTCGTTTGTGATGATCTCA 59.080 43.478 0.00 0.00 0.00 3.27
660 662 4.385748 CGTCTTCGTTTGTGATGATCTCAA 59.614 41.667 5.88 5.88 35.07 3.02
661 663 5.107491 CGTCTTCGTTTGTGATGATCTCAAA 60.107 40.000 16.10 16.10 37.47 2.69
669 671 7.991084 TTTGTGATGATCTCAAACAGATTCT 57.009 32.000 16.10 0.00 42.48 2.40
670 672 7.991084 TTGTGATGATCTCAAACAGATTCTT 57.009 32.000 7.40 0.00 42.48 2.52
671 673 7.373778 TGTGATGATCTCAAACAGATTCTTG 57.626 36.000 0.00 0.00 42.48 3.02
672 674 6.938596 TGTGATGATCTCAAACAGATTCTTGT 59.061 34.615 0.00 0.00 42.48 3.16
673 675 7.094933 TGTGATGATCTCAAACAGATTCTTGTG 60.095 37.037 0.00 0.00 42.48 3.33
674 676 6.938596 TGATGATCTCAAACAGATTCTTGTGT 59.061 34.615 0.00 0.00 42.48 3.72
675 677 6.549912 TGATCTCAAACAGATTCTTGTGTG 57.450 37.500 0.00 0.00 42.48 3.82
676 678 6.290605 TGATCTCAAACAGATTCTTGTGTGA 58.709 36.000 0.00 8.11 42.48 3.58
677 679 6.938596 TGATCTCAAACAGATTCTTGTGTGAT 59.061 34.615 8.59 7.14 42.73 3.06
678 680 7.446319 TGATCTCAAACAGATTCTTGTGTGATT 59.554 33.333 8.59 2.85 42.73 2.57
679 681 7.572523 TCTCAAACAGATTCTTGTGTGATTT 57.427 32.000 8.59 0.00 42.73 2.17
680 682 7.999679 TCTCAAACAGATTCTTGTGTGATTTT 58.000 30.769 8.59 0.00 42.73 1.82
681 683 8.469200 TCTCAAACAGATTCTTGTGTGATTTTT 58.531 29.630 8.59 0.00 42.73 1.94
705 707 6.561737 TTTTGAATTATGCAGTACCGTTGA 57.438 33.333 0.00 0.00 0.00 3.18
706 708 6.561737 TTTGAATTATGCAGTACCGTTGAA 57.438 33.333 0.00 0.00 0.00 2.69
707 709 5.794687 TGAATTATGCAGTACCGTTGAAG 57.205 39.130 0.00 0.00 0.00 3.02
708 710 5.483811 TGAATTATGCAGTACCGTTGAAGA 58.516 37.500 0.00 0.00 0.00 2.87
709 711 5.935206 TGAATTATGCAGTACCGTTGAAGAA 59.065 36.000 0.00 0.00 0.00 2.52
710 712 6.092122 TGAATTATGCAGTACCGTTGAAGAAG 59.908 38.462 0.00 0.00 0.00 2.85
711 713 2.902705 TGCAGTACCGTTGAAGAAGT 57.097 45.000 0.00 0.00 0.00 3.01
712 714 3.188159 TGCAGTACCGTTGAAGAAGTT 57.812 42.857 0.00 0.00 0.00 2.66
713 715 3.537580 TGCAGTACCGTTGAAGAAGTTT 58.462 40.909 0.00 0.00 0.00 2.66
714 716 3.558418 TGCAGTACCGTTGAAGAAGTTTC 59.442 43.478 0.00 0.00 0.00 2.78
715 717 3.558418 GCAGTACCGTTGAAGAAGTTTCA 59.442 43.478 0.00 0.00 0.00 2.69
716 718 4.034742 GCAGTACCGTTGAAGAAGTTTCAA 59.965 41.667 0.00 0.00 36.21 2.69
724 726 5.630661 TTGAAGAAGTTTCAACCGAACAA 57.369 34.783 0.00 0.00 33.90 2.83
725 727 5.630661 TGAAGAAGTTTCAACCGAACAAA 57.369 34.783 0.00 0.00 0.00 2.83
726 728 6.202516 TGAAGAAGTTTCAACCGAACAAAT 57.797 33.333 0.00 0.00 0.00 2.32
727 729 6.626302 TGAAGAAGTTTCAACCGAACAAATT 58.374 32.000 0.00 0.00 0.00 1.82
728 730 6.750039 TGAAGAAGTTTCAACCGAACAAATTC 59.250 34.615 0.00 0.00 0.00 2.17
729 731 6.451064 AGAAGTTTCAACCGAACAAATTCT 57.549 33.333 0.00 0.00 32.12 2.40
730 732 6.863275 AGAAGTTTCAACCGAACAAATTCTT 58.137 32.000 0.00 0.00 32.12 2.52
731 733 7.320399 AGAAGTTTCAACCGAACAAATTCTTT 58.680 30.769 0.00 0.00 32.12 2.52
732 734 7.817478 AGAAGTTTCAACCGAACAAATTCTTTT 59.183 29.630 0.00 0.00 32.12 2.27
733 735 7.899178 AGTTTCAACCGAACAAATTCTTTTT 57.101 28.000 0.00 0.00 32.12 1.94
734 736 7.738345 AGTTTCAACCGAACAAATTCTTTTTG 58.262 30.769 0.00 0.00 35.64 2.44
735 737 5.710613 TCAACCGAACAAATTCTTTTTGC 57.289 34.783 0.00 0.00 32.93 3.68
736 738 5.415221 TCAACCGAACAAATTCTTTTTGCT 58.585 33.333 0.00 0.00 32.93 3.91
737 739 5.872070 TCAACCGAACAAATTCTTTTTGCTT 59.128 32.000 0.00 0.00 32.93 3.91
738 740 5.966636 ACCGAACAAATTCTTTTTGCTTC 57.033 34.783 0.00 2.22 32.93 3.86
739 741 5.660460 ACCGAACAAATTCTTTTTGCTTCT 58.340 33.333 0.00 0.00 32.93 2.85
740 742 5.519927 ACCGAACAAATTCTTTTTGCTTCTG 59.480 36.000 0.00 2.41 32.93 3.02
741 743 5.519927 CCGAACAAATTCTTTTTGCTTCTGT 59.480 36.000 0.00 0.00 32.93 3.41
742 744 6.035975 CCGAACAAATTCTTTTTGCTTCTGTT 59.964 34.615 0.00 0.00 32.93 3.16
743 745 7.113027 CGAACAAATTCTTTTTGCTTCTGTTC 58.887 34.615 0.00 0.00 32.93 3.18
754 756 1.719600 CTTCTGTTCCGGCTGAAGAG 58.280 55.000 17.96 9.15 43.86 2.85
762 764 0.035056 CCGGCTGAAGAGGTTCCAAT 60.035 55.000 0.00 0.00 0.00 3.16
788 790 6.681178 CCGTAAAATCAATTTAGCACGTACAG 59.319 38.462 0.00 0.00 34.21 2.74
805 807 7.357303 CACGTACAGCAAACTAAATTTAAGGT 58.643 34.615 0.00 0.00 0.00 3.50
825 827 9.757227 TTAAGGTTTTGAATTTTAGTGGATGTG 57.243 29.630 0.00 0.00 0.00 3.21
826 828 6.223120 AGGTTTTGAATTTTAGTGGATGTGC 58.777 36.000 0.00 0.00 0.00 4.57
827 829 5.988561 GGTTTTGAATTTTAGTGGATGTGCA 59.011 36.000 0.00 0.00 0.00 4.57
874 876 1.597027 CCTTGTCGTTGCCGTCCTT 60.597 57.895 0.00 0.00 35.01 3.36
875 877 1.164041 CCTTGTCGTTGCCGTCCTTT 61.164 55.000 0.00 0.00 35.01 3.11
876 878 0.661020 CTTGTCGTTGCCGTCCTTTT 59.339 50.000 0.00 0.00 35.01 2.27
877 879 0.658897 TTGTCGTTGCCGTCCTTTTC 59.341 50.000 0.00 0.00 35.01 2.29
878 880 0.462225 TGTCGTTGCCGTCCTTTTCA 60.462 50.000 0.00 0.00 35.01 2.69
879 881 0.658897 GTCGTTGCCGTCCTTTTCAA 59.341 50.000 0.00 0.00 35.01 2.69
1112 1126 2.930562 AAGCTCCCTGTCCGCCTT 60.931 61.111 0.00 0.00 0.00 4.35
1130 1144 3.866449 GCCTTCACTTCGAGTTTGATCCT 60.866 47.826 0.00 0.00 0.00 3.24
1519 1563 2.561569 CACACCTTCAACTTCCTCGTT 58.438 47.619 0.00 0.00 0.00 3.85
1560 1604 4.065088 CTCACGAATCCCTCTTTTGTTCA 58.935 43.478 0.00 0.00 0.00 3.18
1727 1771 3.055094 GGTTAGGGAAGACTTCATGCAGA 60.055 47.826 16.85 0.00 0.00 4.26
1777 1821 0.322816 AACACCCGCTTGCTGATGAT 60.323 50.000 0.00 0.00 0.00 2.45
1892 1936 8.994500 TGGGTTATATATACTTTGGTGTTCTCA 58.006 33.333 0.00 0.00 0.00 3.27
2075 2119 6.038271 ACATCGAGAAGGTATGCATTTAAACC 59.962 38.462 3.54 6.36 0.00 3.27
2255 2299 7.862372 ACATGTTCTTTTATGTACAGTTTGCTG 59.138 33.333 0.33 0.00 38.08 4.41
2279 2323 3.687698 ACAAGGGTGTGATATAAACGTGC 59.312 43.478 0.00 0.00 36.31 5.34
2460 2511 6.613271 AGTGATAGGTGGTGATGAGATTTAGT 59.387 38.462 0.00 0.00 0.00 2.24
2695 2746 6.910191 TGTCCTGGGGCATATATTATTATGG 58.090 40.000 0.00 0.00 31.50 2.74
2735 2786 2.330216 AGTCTAGTGCCCTGTTCAGTT 58.670 47.619 0.00 0.00 0.00 3.16
2794 2845 8.078596 GGAAAATAGCCACAACTTCATATCATC 58.921 37.037 0.00 0.00 0.00 2.92
3126 3178 3.054802 CCTGAGGTTTAAGCTGATGGTCT 60.055 47.826 0.00 0.00 0.00 3.85
3140 3192 2.358615 GTCTGTGGTGGCATCGCA 60.359 61.111 14.14 14.14 0.00 5.10
3211 3263 6.210385 TGCTAGAGAGTTCAGAGTCTTCATTT 59.790 38.462 0.00 0.00 35.69 2.32
3418 3472 2.158564 AGGGGGACGTCACTCGATTATA 60.159 50.000 18.98 0.00 42.86 0.98
3457 3511 0.457443 GCTTATTGCCTGGACCTTGC 59.543 55.000 0.00 0.00 35.15 4.01
3480 3534 1.474478 TGCTCAGATCCTCTTGACGAC 59.526 52.381 0.00 0.00 0.00 4.34
3536 3590 3.245122 ACGGTGGTGTATTTGGGATTTCT 60.245 43.478 0.00 0.00 0.00 2.52
3604 3658 6.271284 GCAATTTTCTGCAGGATACCTCCG 62.271 50.000 15.13 0.00 42.17 4.63
3759 3813 0.323725 TGCCCCTTTCTGCAATCTCC 60.324 55.000 0.00 0.00 33.87 3.71
3762 3816 1.661341 CCCTTTCTGCAATCTCCTCG 58.339 55.000 0.00 0.00 0.00 4.63
3779 3836 1.748122 CGCCTTTCAGCTGCAGGAT 60.748 57.895 27.57 0.00 0.00 3.24
3837 3894 0.319813 AAACTTTGGCGCTTGATGGC 60.320 50.000 7.64 0.00 0.00 4.40
3848 3905 1.915141 CTTGATGGCACCTTCCTTGT 58.085 50.000 0.00 0.00 0.00 3.16
3905 3962 2.213280 GGGAGCTGACCCTTACTCC 58.787 63.158 3.13 0.00 46.61 3.85
3912 3969 2.820197 GCTGACCCTTACTCCCAAAAAG 59.180 50.000 0.00 0.00 0.00 2.27
3913 3970 3.497942 GCTGACCCTTACTCCCAAAAAGA 60.498 47.826 0.00 0.00 0.00 2.52
3914 3971 4.725490 CTGACCCTTACTCCCAAAAAGAA 58.275 43.478 0.00 0.00 0.00 2.52
3915 3972 5.132043 TGACCCTTACTCCCAAAAAGAAA 57.868 39.130 0.00 0.00 0.00 2.52
3916 3973 5.137551 TGACCCTTACTCCCAAAAAGAAAG 58.862 41.667 0.00 0.00 0.00 2.62
3917 3974 5.138276 GACCCTTACTCCCAAAAAGAAAGT 58.862 41.667 0.00 0.00 0.00 2.66
3972 4035 6.540914 GTCTTATATAGGGGATGAGAGACTCG 59.459 46.154 0.00 0.00 32.35 4.18
3996 4059 0.036952 CTCGCTGGTGACATCAACCT 60.037 55.000 0.00 0.00 41.51 3.50
4023 4087 1.417890 AGAACACCAGTCCAGGACTTG 59.582 52.381 20.57 18.89 41.37 3.16
4024 4088 1.416401 GAACACCAGTCCAGGACTTGA 59.584 52.381 24.49 0.00 41.37 3.02
4025 4089 1.051812 ACACCAGTCCAGGACTTGAG 58.948 55.000 24.49 19.29 41.37 3.02
4026 4090 1.051812 CACCAGTCCAGGACTTGAGT 58.948 55.000 24.49 16.91 41.37 3.41
4027 4091 1.051812 ACCAGTCCAGGACTTGAGTG 58.948 55.000 24.49 12.38 41.37 3.51
4028 4092 0.321122 CCAGTCCAGGACTTGAGTGC 60.321 60.000 20.57 0.00 41.37 4.40
4069 4133 3.047877 GTTGCTAGCCACCGCGTT 61.048 61.111 13.29 0.00 41.18 4.84
4070 4134 3.047280 TTGCTAGCCACCGCGTTG 61.047 61.111 13.29 0.00 41.18 4.10
4073 4137 2.183300 CTAGCCACCGCGTTGCTA 59.817 61.111 17.03 17.03 41.18 3.49
4074 4138 1.878522 CTAGCCACCGCGTTGCTAG 60.879 63.158 24.63 24.63 44.34 3.42
4078 4142 3.788766 CACCGCGTTGCTAGCCAC 61.789 66.667 13.29 10.90 0.00 5.01
4101 4165 0.109086 AGCGACGGTCAGTTCTCATG 60.109 55.000 9.10 0.00 0.00 3.07
4102 4166 0.109272 GCGACGGTCAGTTCTCATGA 60.109 55.000 9.10 0.00 0.00 3.07
4107 4171 2.828520 ACGGTCAGTTCTCATGAGACAT 59.171 45.455 25.07 13.51 37.14 3.06
4117 4181 4.774124 TCTCATGAGACATCCAATTGGTC 58.226 43.478 21.67 14.24 32.44 4.02
4118 4182 4.225717 TCTCATGAGACATCCAATTGGTCA 59.774 41.667 21.67 18.91 34.04 4.02
4152 4216 2.674852 ACGATCTAGTTCACGCGTCTAA 59.325 45.455 9.86 3.65 0.00 2.10
4156 4220 2.486982 TCTAGTTCACGCGTCTAAGCTT 59.513 45.455 9.86 3.48 34.40 3.74
4165 4229 0.982673 CGTCTAAGCTTTGTCCGTCG 59.017 55.000 3.20 1.66 0.00 5.12
4217 4281 9.540538 TCTTCCCTTATTCCAAAATGTTATTGA 57.459 29.630 0.00 0.00 0.00 2.57
4220 4284 9.540538 TCCCTTATTCCAAAATGTTATTGAAGA 57.459 29.630 0.00 0.00 0.00 2.87
4232 4296 9.435688 AAATGTTATTGAAGATAAAAAGTGCCC 57.564 29.630 0.00 0.00 0.00 5.36
4233 4297 7.531857 TGTTATTGAAGATAAAAAGTGCCCA 57.468 32.000 0.00 0.00 0.00 5.36
4234 4298 7.375053 TGTTATTGAAGATAAAAAGTGCCCAC 58.625 34.615 0.00 0.00 0.00 4.61
4235 4299 7.232534 TGTTATTGAAGATAAAAAGTGCCCACT 59.767 33.333 0.00 0.00 44.94 4.00
4236 4300 8.736244 GTTATTGAAGATAAAAAGTGCCCACTA 58.264 33.333 0.72 0.00 41.58 2.74
4237 4301 6.569179 TTGAAGATAAAAAGTGCCCACTAC 57.431 37.500 0.72 0.00 41.58 2.73
4238 4302 5.626142 TGAAGATAAAAAGTGCCCACTACA 58.374 37.500 0.72 0.00 41.58 2.74
4239 4303 5.705441 TGAAGATAAAAAGTGCCCACTACAG 59.295 40.000 0.72 0.00 41.58 2.74
4240 4304 4.010349 AGATAAAAAGTGCCCACTACAGC 58.990 43.478 0.72 0.00 41.58 4.40
4241 4305 0.951558 AAAAAGTGCCCACTACAGCG 59.048 50.000 0.72 0.00 41.58 5.18
4242 4306 0.889186 AAAAGTGCCCACTACAGCGG 60.889 55.000 0.72 0.00 41.58 5.52
4243 4307 1.764571 AAAGTGCCCACTACAGCGGA 61.765 55.000 0.72 0.00 41.58 5.54
4244 4308 2.125512 GTGCCCACTACAGCGGAG 60.126 66.667 0.00 0.00 0.00 4.63
4245 4309 2.603473 TGCCCACTACAGCGGAGT 60.603 61.111 0.00 0.00 0.00 3.85
4246 4310 2.214216 TGCCCACTACAGCGGAGTT 61.214 57.895 0.00 0.00 0.00 3.01
4247 4311 1.448013 GCCCACTACAGCGGAGTTC 60.448 63.158 0.00 0.00 0.00 3.01
4248 4312 1.218316 CCCACTACAGCGGAGTTCC 59.782 63.158 0.00 0.00 0.00 3.62
4249 4313 1.541310 CCCACTACAGCGGAGTTCCA 61.541 60.000 0.00 0.00 35.14 3.53
4250 4314 0.389948 CCACTACAGCGGAGTTCCAC 60.390 60.000 0.00 0.00 35.14 4.02
4251 4315 0.317160 CACTACAGCGGAGTTCCACA 59.683 55.000 0.00 0.00 35.14 4.17
4252 4316 1.066858 CACTACAGCGGAGTTCCACAT 60.067 52.381 0.00 0.00 35.14 3.21
4253 4317 1.066858 ACTACAGCGGAGTTCCACATG 60.067 52.381 0.00 0.00 35.14 3.21
4254 4318 0.973632 TACAGCGGAGTTCCACATGT 59.026 50.000 0.00 0.00 35.14 3.21
4255 4319 0.603707 ACAGCGGAGTTCCACATGTG 60.604 55.000 19.31 19.31 35.14 3.21
4256 4320 1.672356 AGCGGAGTTCCACATGTGC 60.672 57.895 20.81 7.08 35.14 4.57
4257 4321 2.690778 GCGGAGTTCCACATGTGCC 61.691 63.158 20.81 14.12 35.14 5.01
4258 4322 2.040544 CGGAGTTCCACATGTGCCC 61.041 63.158 20.81 13.30 35.14 5.36
4259 4323 1.074775 GGAGTTCCACATGTGCCCA 59.925 57.895 20.81 3.27 35.64 5.36
4260 4324 1.244019 GGAGTTCCACATGTGCCCAC 61.244 60.000 20.81 14.89 35.64 4.61
4261 4325 1.228552 AGTTCCACATGTGCCCACC 60.229 57.895 20.81 5.80 0.00 4.61
4262 4326 2.117206 TTCCACATGTGCCCACCC 59.883 61.111 20.81 0.00 0.00 4.61
4263 4327 2.772423 TTCCACATGTGCCCACCCA 61.772 57.895 20.81 0.00 0.00 4.51
4264 4328 2.990967 CCACATGTGCCCACCCAC 60.991 66.667 20.81 0.00 36.28 4.61
4265 4329 3.364441 CACATGTGCCCACCCACG 61.364 66.667 13.94 0.00 38.55 4.94
4268 4332 4.284550 ATGTGCCCACCCACGCTT 62.285 61.111 0.00 0.00 38.55 4.68
4269 4333 3.808218 ATGTGCCCACCCACGCTTT 62.808 57.895 0.00 0.00 38.55 3.51
4270 4334 3.670377 GTGCCCACCCACGCTTTC 61.670 66.667 0.00 0.00 0.00 2.62
4271 4335 4.966787 TGCCCACCCACGCTTTCC 62.967 66.667 0.00 0.00 0.00 3.13
4274 4338 3.966543 CCACCCACGCTTTCCCCT 61.967 66.667 0.00 0.00 0.00 4.79
4275 4339 2.359975 CACCCACGCTTTCCCCTC 60.360 66.667 0.00 0.00 0.00 4.30
4276 4340 4.016706 ACCCACGCTTTCCCCTCG 62.017 66.667 0.00 0.00 0.00 4.63
4329 4393 2.434359 GCGGTAGCTTCAACGCCT 60.434 61.111 7.71 0.00 45.70 5.52
4330 4394 2.453638 GCGGTAGCTTCAACGCCTC 61.454 63.158 7.71 0.00 45.70 4.70
4331 4395 1.810030 CGGTAGCTTCAACGCCTCC 60.810 63.158 0.00 0.00 0.00 4.30
4332 4396 1.597461 GGTAGCTTCAACGCCTCCT 59.403 57.895 0.00 0.00 0.00 3.69
4333 4397 0.741221 GGTAGCTTCAACGCCTCCTG 60.741 60.000 0.00 0.00 0.00 3.86
4334 4398 0.741221 GTAGCTTCAACGCCTCCTGG 60.741 60.000 0.00 0.00 0.00 4.45
4335 4399 1.192146 TAGCTTCAACGCCTCCTGGT 61.192 55.000 0.00 0.00 35.27 4.00
4336 4400 1.600916 GCTTCAACGCCTCCTGGTT 60.601 57.895 0.00 0.00 35.27 3.67
4337 4401 1.578206 GCTTCAACGCCTCCTGGTTC 61.578 60.000 0.00 0.00 35.27 3.62
4338 4402 0.250295 CTTCAACGCCTCCTGGTTCA 60.250 55.000 0.00 0.00 35.27 3.18
4339 4403 0.400213 TTCAACGCCTCCTGGTTCAT 59.600 50.000 0.00 0.00 35.27 2.57
4340 4404 0.321564 TCAACGCCTCCTGGTTCATG 60.322 55.000 0.00 0.00 35.27 3.07
4341 4405 1.675641 AACGCCTCCTGGTTCATGC 60.676 57.895 0.00 0.00 35.27 4.06
4342 4406 2.825836 CGCCTCCTGGTTCATGCC 60.826 66.667 0.00 0.00 35.27 4.40
4343 4407 2.440980 GCCTCCTGGTTCATGCCC 60.441 66.667 0.00 0.00 35.27 5.36
4344 4408 2.276740 CCTCCTGGTTCATGCCCC 59.723 66.667 0.00 0.00 0.00 5.80
4345 4409 2.311854 CCTCCTGGTTCATGCCCCT 61.312 63.158 0.00 0.00 0.00 4.79
4346 4410 1.077212 CTCCTGGTTCATGCCCCTG 60.077 63.158 0.00 0.00 0.00 4.45
4347 4411 2.757099 CCTGGTTCATGCCCCTGC 60.757 66.667 0.00 0.00 38.26 4.85
4348 4412 2.757099 CTGGTTCATGCCCCTGCC 60.757 66.667 0.00 0.00 36.33 4.85
4349 4413 4.738998 TGGTTCATGCCCCTGCCG 62.739 66.667 0.00 0.00 36.33 5.69
4437 4501 3.181967 CGACCTCGGCGCTTTCAG 61.182 66.667 7.64 0.00 35.37 3.02
4438 4502 2.261671 GACCTCGGCGCTTTCAGA 59.738 61.111 7.64 0.00 0.00 3.27
4439 4503 1.153549 GACCTCGGCGCTTTCAGAT 60.154 57.895 7.64 0.00 0.00 2.90
4440 4504 1.148759 GACCTCGGCGCTTTCAGATC 61.149 60.000 7.64 0.00 0.00 2.75
4441 4505 1.142748 CCTCGGCGCTTTCAGATCT 59.857 57.895 7.64 0.00 0.00 2.75
4442 4506 0.873743 CCTCGGCGCTTTCAGATCTC 60.874 60.000 7.64 0.00 0.00 2.75
4443 4507 1.205485 CTCGGCGCTTTCAGATCTCG 61.205 60.000 7.64 0.00 0.00 4.04
4444 4508 1.226688 CGGCGCTTTCAGATCTCGA 60.227 57.895 7.64 0.00 0.00 4.04
4445 4509 0.596083 CGGCGCTTTCAGATCTCGAT 60.596 55.000 7.64 0.00 0.00 3.59
4446 4510 1.135867 GGCGCTTTCAGATCTCGATC 58.864 55.000 7.64 0.00 38.09 3.69
4447 4511 1.135867 GCGCTTTCAGATCTCGATCC 58.864 55.000 0.00 0.00 38.58 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
183 185 4.124351 CCCATGCTGCAGCCGTTG 62.124 66.667 34.64 26.52 41.18 4.10
188 190 3.446570 GACACCCCATGCTGCAGC 61.447 66.667 31.89 31.89 42.50 5.25
189 191 3.129502 CGACACCCCATGCTGCAG 61.130 66.667 10.11 10.11 0.00 4.41
193 195 4.415150 CCAGCGACACCCCATGCT 62.415 66.667 0.00 0.00 38.43 3.79
199 201 4.814294 CTACCGCCAGCGACACCC 62.814 72.222 14.67 0.00 42.83 4.61
200 202 3.291101 TTCTACCGCCAGCGACACC 62.291 63.158 14.67 0.00 42.83 4.16
201 203 2.092882 GTTCTACCGCCAGCGACAC 61.093 63.158 14.67 0.00 42.83 3.67
202 204 2.260434 GTTCTACCGCCAGCGACA 59.740 61.111 14.67 0.00 42.83 4.35
203 205 2.879462 CGTTCTACCGCCAGCGAC 60.879 66.667 14.67 2.02 42.83 5.19
211 213 2.813908 GCCTGTGGCGTTCTACCG 60.814 66.667 0.00 0.00 39.62 4.02
232 234 0.397114 CTCCTTACCCAATTGCCCCC 60.397 60.000 0.00 0.00 0.00 5.40
233 235 0.335019 ACTCCTTACCCAATTGCCCC 59.665 55.000 0.00 0.00 0.00 5.80
234 236 1.474330 CACTCCTTACCCAATTGCCC 58.526 55.000 0.00 0.00 0.00 5.36
235 237 0.817654 GCACTCCTTACCCAATTGCC 59.182 55.000 0.00 0.00 0.00 4.52
236 238 0.817654 GGCACTCCTTACCCAATTGC 59.182 55.000 0.00 0.00 0.00 3.56
237 239 1.094785 CGGCACTCCTTACCCAATTG 58.905 55.000 0.00 0.00 0.00 2.32
238 240 0.034477 CCGGCACTCCTTACCCAATT 60.034 55.000 0.00 0.00 0.00 2.32
239 241 1.607612 CCGGCACTCCTTACCCAAT 59.392 57.895 0.00 0.00 0.00 3.16
240 242 3.074281 CCGGCACTCCTTACCCAA 58.926 61.111 0.00 0.00 0.00 4.12
241 243 3.712907 GCCGGCACTCCTTACCCA 61.713 66.667 24.80 0.00 0.00 4.51
242 244 3.682292 CTGCCGGCACTCCTTACCC 62.682 68.421 29.03 0.00 0.00 3.69
243 245 2.125106 CTGCCGGCACTCCTTACC 60.125 66.667 29.03 0.00 0.00 2.85
244 246 2.125106 CCTGCCGGCACTCCTTAC 60.125 66.667 29.03 0.00 0.00 2.34
245 247 2.808761 TACCCTGCCGGCACTCCTTA 62.809 60.000 29.03 9.71 33.26 2.69
247 249 4.715130 TACCCTGCCGGCACTCCT 62.715 66.667 29.03 10.79 33.26 3.69
248 250 4.162690 CTACCCTGCCGGCACTCC 62.163 72.222 29.03 0.00 33.26 3.85
249 251 4.162690 CCTACCCTGCCGGCACTC 62.163 72.222 29.03 0.00 33.26 3.51
304 306 4.803426 GCCACCCTCTGTCGCGAG 62.803 72.222 10.24 0.00 0.00 5.03
324 326 3.842923 ATCTCCACCTCCAGCGCG 61.843 66.667 0.00 0.00 0.00 6.86
325 327 2.202987 CATCTCCACCTCCAGCGC 60.203 66.667 0.00 0.00 0.00 5.92
326 328 2.202987 GCATCTCCACCTCCAGCG 60.203 66.667 0.00 0.00 0.00 5.18
327 329 2.037620 ATCGCATCTCCACCTCCAGC 62.038 60.000 0.00 0.00 0.00 4.85
328 330 0.467384 AATCGCATCTCCACCTCCAG 59.533 55.000 0.00 0.00 0.00 3.86
329 331 0.178767 CAATCGCATCTCCACCTCCA 59.821 55.000 0.00 0.00 0.00 3.86
330 332 0.533755 CCAATCGCATCTCCACCTCC 60.534 60.000 0.00 0.00 0.00 4.30
331 333 0.533755 CCCAATCGCATCTCCACCTC 60.534 60.000 0.00 0.00 0.00 3.85
332 334 0.982852 TCCCAATCGCATCTCCACCT 60.983 55.000 0.00 0.00 0.00 4.00
333 335 0.533755 CTCCCAATCGCATCTCCACC 60.534 60.000 0.00 0.00 0.00 4.61
334 336 0.179000 ACTCCCAATCGCATCTCCAC 59.821 55.000 0.00 0.00 0.00 4.02
335 337 0.911769 AACTCCCAATCGCATCTCCA 59.088 50.000 0.00 0.00 0.00 3.86
336 338 2.044123 AAACTCCCAATCGCATCTCC 57.956 50.000 0.00 0.00 0.00 3.71
337 339 5.757850 AATAAAACTCCCAATCGCATCTC 57.242 39.130 0.00 0.00 0.00 2.75
338 340 6.530019 AAAATAAAACTCCCAATCGCATCT 57.470 33.333 0.00 0.00 0.00 2.90
339 341 7.035612 AGAAAAATAAAACTCCCAATCGCATC 58.964 34.615 0.00 0.00 0.00 3.91
340 342 6.935167 AGAAAAATAAAACTCCCAATCGCAT 58.065 32.000 0.00 0.00 0.00 4.73
341 343 6.339587 AGAAAAATAAAACTCCCAATCGCA 57.660 33.333 0.00 0.00 0.00 5.10
342 344 7.376072 CGATAGAAAAATAAAACTCCCAATCGC 59.624 37.037 0.00 0.00 39.76 4.58
343 345 7.376072 GCGATAGAAAAATAAAACTCCCAATCG 59.624 37.037 0.00 0.00 39.76 3.34
344 346 8.406297 AGCGATAGAAAAATAAAACTCCCAATC 58.594 33.333 0.00 0.00 39.76 2.67
345 347 8.293699 AGCGATAGAAAAATAAAACTCCCAAT 57.706 30.769 0.00 0.00 39.76 3.16
346 348 7.413657 CGAGCGATAGAAAAATAAAACTCCCAA 60.414 37.037 0.00 0.00 39.76 4.12
347 349 6.036735 CGAGCGATAGAAAAATAAAACTCCCA 59.963 38.462 0.00 0.00 39.76 4.37
348 350 6.036844 ACGAGCGATAGAAAAATAAAACTCCC 59.963 38.462 0.00 0.00 39.76 4.30
349 351 6.900299 CACGAGCGATAGAAAAATAAAACTCC 59.100 38.462 0.00 0.00 39.76 3.85
350 352 6.900299 CCACGAGCGATAGAAAAATAAAACTC 59.100 38.462 0.00 0.00 39.76 3.01
351 353 6.674760 GCCACGAGCGATAGAAAAATAAAACT 60.675 38.462 0.00 0.00 39.76 2.66
352 354 5.451342 GCCACGAGCGATAGAAAAATAAAAC 59.549 40.000 0.00 0.00 39.76 2.43
353 355 5.565695 GCCACGAGCGATAGAAAAATAAAA 58.434 37.500 0.00 0.00 39.76 1.52
354 356 5.151632 GCCACGAGCGATAGAAAAATAAA 57.848 39.130 0.00 0.00 39.76 1.40
355 357 4.789095 GCCACGAGCGATAGAAAAATAA 57.211 40.909 0.00 0.00 39.76 1.40
368 370 2.165301 AACGCGAATAGCCACGAGC 61.165 57.895 15.93 0.00 44.76 5.03
369 371 0.800683 TCAACGCGAATAGCCACGAG 60.801 55.000 15.93 0.00 44.76 4.18
370 372 1.074319 GTCAACGCGAATAGCCACGA 61.074 55.000 15.93 0.00 44.76 4.35
371 373 1.076533 AGTCAACGCGAATAGCCACG 61.077 55.000 15.93 0.00 44.76 4.94
372 374 1.076332 AAGTCAACGCGAATAGCCAC 58.924 50.000 15.93 0.00 44.76 5.01
373 375 1.075542 CAAGTCAACGCGAATAGCCA 58.924 50.000 15.93 0.00 44.76 4.75
374 376 1.355971 TCAAGTCAACGCGAATAGCC 58.644 50.000 15.93 0.00 44.76 3.93
375 377 2.346741 CGATCAAGTCAACGCGAATAGC 60.347 50.000 15.93 0.00 43.95 2.97
376 378 2.216488 CCGATCAAGTCAACGCGAATAG 59.784 50.000 15.93 0.00 0.00 1.73
377 379 2.159352 TCCGATCAAGTCAACGCGAATA 60.159 45.455 15.93 0.00 0.00 1.75
378 380 0.999406 CCGATCAAGTCAACGCGAAT 59.001 50.000 15.93 0.00 0.00 3.34
379 381 0.038983 TCCGATCAAGTCAACGCGAA 60.039 50.000 15.93 0.00 0.00 4.70
380 382 0.731514 GTCCGATCAAGTCAACGCGA 60.732 55.000 15.93 0.00 0.00 5.87
381 383 0.732880 AGTCCGATCAAGTCAACGCG 60.733 55.000 3.53 3.53 0.00 6.01
382 384 0.716108 CAGTCCGATCAAGTCAACGC 59.284 55.000 0.00 0.00 0.00 4.84
383 385 0.716108 GCAGTCCGATCAAGTCAACG 59.284 55.000 0.00 0.00 0.00 4.10
384 386 0.716108 CGCAGTCCGATCAAGTCAAC 59.284 55.000 0.00 0.00 40.02 3.18
385 387 0.601057 TCGCAGTCCGATCAAGTCAA 59.399 50.000 0.00 0.00 41.89 3.18
386 388 0.171231 CTCGCAGTCCGATCAAGTCA 59.829 55.000 0.00 0.00 46.31 3.41
387 389 0.171455 ACTCGCAGTCCGATCAAGTC 59.829 55.000 0.00 0.00 46.31 3.01
388 390 0.603569 AACTCGCAGTCCGATCAAGT 59.396 50.000 0.00 0.00 46.31 3.16
389 391 1.714794 AAACTCGCAGTCCGATCAAG 58.285 50.000 0.00 0.00 46.31 3.02
390 392 3.520290 ATAAACTCGCAGTCCGATCAA 57.480 42.857 0.00 0.00 46.31 2.57
391 393 3.444916 GAATAAACTCGCAGTCCGATCA 58.555 45.455 0.00 0.00 46.31 2.92
392 394 2.795470 GGAATAAACTCGCAGTCCGATC 59.205 50.000 0.00 0.00 46.31 3.69
393 395 2.431057 AGGAATAAACTCGCAGTCCGAT 59.569 45.455 0.00 0.00 46.31 4.18
394 396 1.822990 AGGAATAAACTCGCAGTCCGA 59.177 47.619 0.00 0.00 45.15 4.55
395 397 2.295253 AGGAATAAACTCGCAGTCCG 57.705 50.000 0.00 0.00 34.15 4.79
409 411 9.769677 AGAAAAGCCCTTAAAGTTTATAGGAAT 57.230 29.630 18.12 8.75 0.00 3.01
410 412 9.020731 CAGAAAAGCCCTTAAAGTTTATAGGAA 57.979 33.333 18.12 0.00 0.00 3.36
411 413 7.614192 CCAGAAAAGCCCTTAAAGTTTATAGGA 59.386 37.037 18.12 0.00 0.00 2.94
412 414 7.614192 TCCAGAAAAGCCCTTAAAGTTTATAGG 59.386 37.037 13.02 13.02 0.00 2.57
413 415 8.575649 TCCAGAAAAGCCCTTAAAGTTTATAG 57.424 34.615 0.00 0.00 0.00 1.31
414 416 8.943594 TTCCAGAAAAGCCCTTAAAGTTTATA 57.056 30.769 0.00 0.00 0.00 0.98
415 417 7.849322 TTCCAGAAAAGCCCTTAAAGTTTAT 57.151 32.000 0.00 0.00 0.00 1.40
416 418 7.663043 TTTCCAGAAAAGCCCTTAAAGTTTA 57.337 32.000 0.00 0.00 0.00 2.01
417 419 6.553953 TTTCCAGAAAAGCCCTTAAAGTTT 57.446 33.333 0.00 0.00 0.00 2.66
418 420 6.553953 TTTTCCAGAAAAGCCCTTAAAGTT 57.446 33.333 1.45 0.00 35.57 2.66
419 421 6.553953 TTTTTCCAGAAAAGCCCTTAAAGT 57.446 33.333 5.76 0.00 40.83 2.66
420 422 8.367911 AGTATTTTTCCAGAAAAGCCCTTAAAG 58.632 33.333 5.76 0.00 40.83 1.85
421 423 8.257602 AGTATTTTTCCAGAAAAGCCCTTAAA 57.742 30.769 5.76 0.00 40.83 1.52
422 424 7.849322 AGTATTTTTCCAGAAAAGCCCTTAA 57.151 32.000 5.76 0.00 40.83 1.85
423 425 8.943594 TTAGTATTTTTCCAGAAAAGCCCTTA 57.056 30.769 5.76 0.00 40.83 2.69
424 426 7.849322 TTAGTATTTTTCCAGAAAAGCCCTT 57.151 32.000 5.76 0.00 40.83 3.95
425 427 7.673926 TCATTAGTATTTTTCCAGAAAAGCCCT 59.326 33.333 5.76 5.85 40.83 5.19
426 428 7.836842 TCATTAGTATTTTTCCAGAAAAGCCC 58.163 34.615 5.76 0.00 40.83 5.19
427 429 9.305925 CATCATTAGTATTTTTCCAGAAAAGCC 57.694 33.333 5.76 0.00 40.83 4.35
428 430 9.305925 CCATCATTAGTATTTTTCCAGAAAAGC 57.694 33.333 5.76 2.15 40.83 3.51
431 433 8.673711 CGTCCATCATTAGTATTTTTCCAGAAA 58.326 33.333 0.00 0.00 0.00 2.52
432 434 8.044309 TCGTCCATCATTAGTATTTTTCCAGAA 58.956 33.333 0.00 0.00 0.00 3.02
433 435 7.561251 TCGTCCATCATTAGTATTTTTCCAGA 58.439 34.615 0.00 0.00 0.00 3.86
434 436 7.786178 TCGTCCATCATTAGTATTTTTCCAG 57.214 36.000 0.00 0.00 0.00 3.86
435 437 7.990314 TGATCGTCCATCATTAGTATTTTTCCA 59.010 33.333 0.00 0.00 36.51 3.53
436 438 8.378172 TGATCGTCCATCATTAGTATTTTTCC 57.622 34.615 0.00 0.00 36.51 3.13
437 439 9.261180 TCTGATCGTCCATCATTAGTATTTTTC 57.739 33.333 0.00 0.00 40.95 2.29
438 440 9.613428 TTCTGATCGTCCATCATTAGTATTTTT 57.387 29.630 0.00 0.00 40.95 1.94
439 441 9.613428 TTTCTGATCGTCCATCATTAGTATTTT 57.387 29.630 0.00 0.00 40.95 1.82
440 442 9.046296 GTTTCTGATCGTCCATCATTAGTATTT 57.954 33.333 0.00 0.00 40.95 1.40
441 443 8.204160 TGTTTCTGATCGTCCATCATTAGTATT 58.796 33.333 0.00 0.00 40.95 1.89
442 444 7.726216 TGTTTCTGATCGTCCATCATTAGTAT 58.274 34.615 0.00 0.00 40.95 2.12
443 445 7.107639 TGTTTCTGATCGTCCATCATTAGTA 57.892 36.000 0.00 0.00 40.95 1.82
444 446 5.977635 TGTTTCTGATCGTCCATCATTAGT 58.022 37.500 0.00 0.00 40.95 2.24
445 447 6.908870 TTGTTTCTGATCGTCCATCATTAG 57.091 37.500 0.00 0.00 40.95 1.73
446 448 8.826710 GTTATTGTTTCTGATCGTCCATCATTA 58.173 33.333 0.00 0.00 40.95 1.90
447 449 7.201732 GGTTATTGTTTCTGATCGTCCATCATT 60.202 37.037 0.00 0.00 40.95 2.57
448 450 6.260936 GGTTATTGTTTCTGATCGTCCATCAT 59.739 38.462 0.00 0.00 40.95 2.45
449 451 5.584649 GGTTATTGTTTCTGATCGTCCATCA 59.415 40.000 0.00 0.00 39.39 3.07
450 452 5.276868 CGGTTATTGTTTCTGATCGTCCATC 60.277 44.000 0.00 0.00 0.00 3.51
451 453 4.570772 CGGTTATTGTTTCTGATCGTCCAT 59.429 41.667 0.00 0.00 0.00 3.41
452 454 3.930229 CGGTTATTGTTTCTGATCGTCCA 59.070 43.478 0.00 0.00 0.00 4.02
453 455 3.242316 GCGGTTATTGTTTCTGATCGTCC 60.242 47.826 0.00 0.00 0.00 4.79
454 456 3.617263 AGCGGTTATTGTTTCTGATCGTC 59.383 43.478 0.00 0.00 0.00 4.20
455 457 3.596214 AGCGGTTATTGTTTCTGATCGT 58.404 40.909 0.00 0.00 0.00 3.73
456 458 4.600012 AAGCGGTTATTGTTTCTGATCG 57.400 40.909 0.00 0.00 0.00 3.69
551 553 9.676129 TTTCCTAATTCTAATCTCTCCCTACAT 57.324 33.333 0.00 0.00 0.00 2.29
552 554 9.502035 TTTTCCTAATTCTAATCTCTCCCTACA 57.498 33.333 0.00 0.00 0.00 2.74
553 555 9.990360 CTTTTCCTAATTCTAATCTCTCCCTAC 57.010 37.037 0.00 0.00 0.00 3.18
554 556 9.953429 TCTTTTCCTAATTCTAATCTCTCCCTA 57.047 33.333 0.00 0.00 0.00 3.53
555 557 8.862091 TCTTTTCCTAATTCTAATCTCTCCCT 57.138 34.615 0.00 0.00 0.00 4.20
586 588 9.622004 CTTACATTATCGAACGGATTACATAGT 57.378 33.333 0.00 0.00 36.55 2.12
587 589 9.836076 TCTTACATTATCGAACGGATTACATAG 57.164 33.333 0.00 0.00 36.55 2.23
589 591 9.706691 ATTCTTACATTATCGAACGGATTACAT 57.293 29.630 0.00 0.00 36.55 2.29
590 592 9.188588 GATTCTTACATTATCGAACGGATTACA 57.811 33.333 0.00 0.00 36.55 2.41
591 593 8.645487 GGATTCTTACATTATCGAACGGATTAC 58.355 37.037 0.00 0.00 36.55 1.89
592 594 8.582437 AGGATTCTTACATTATCGAACGGATTA 58.418 33.333 0.00 0.00 36.55 1.75
593 595 7.442656 AGGATTCTTACATTATCGAACGGATT 58.557 34.615 0.00 0.00 36.55 3.01
594 596 6.994221 AGGATTCTTACATTATCGAACGGAT 58.006 36.000 0.00 0.00 39.25 4.18
595 597 6.401047 AGGATTCTTACATTATCGAACGGA 57.599 37.500 0.00 0.00 0.00 4.69
596 598 7.478520 AAAGGATTCTTACATTATCGAACGG 57.521 36.000 0.00 0.00 32.01 4.44
597 599 7.850982 CCAAAAGGATTCTTACATTATCGAACG 59.149 37.037 0.00 0.00 32.01 3.95
598 600 8.674607 ACCAAAAGGATTCTTACATTATCGAAC 58.325 33.333 0.00 0.00 32.01 3.95
599 601 8.801882 ACCAAAAGGATTCTTACATTATCGAA 57.198 30.769 0.00 0.00 32.01 3.71
604 606 9.967451 TCACATACCAAAAGGATTCTTACATTA 57.033 29.630 0.00 0.00 32.01 1.90
605 607 8.877864 TCACATACCAAAAGGATTCTTACATT 57.122 30.769 0.00 0.00 32.01 2.71
606 608 8.906867 CATCACATACCAAAAGGATTCTTACAT 58.093 33.333 0.00 0.00 32.01 2.29
607 609 8.106462 TCATCACATACCAAAAGGATTCTTACA 58.894 33.333 0.00 0.00 32.01 2.41
608 610 8.506168 TCATCACATACCAAAAGGATTCTTAC 57.494 34.615 0.00 0.00 32.01 2.34
609 611 8.956426 GTTCATCACATACCAAAAGGATTCTTA 58.044 33.333 0.00 0.00 32.01 2.10
610 612 7.671398 AGTTCATCACATACCAAAAGGATTCTT 59.329 33.333 0.00 0.00 34.07 2.52
611 613 7.177878 AGTTCATCACATACCAAAAGGATTCT 58.822 34.615 0.00 0.00 0.00 2.40
612 614 7.396540 AGTTCATCACATACCAAAAGGATTC 57.603 36.000 0.00 0.00 0.00 2.52
613 615 6.094048 CGAGTTCATCACATACCAAAAGGATT 59.906 38.462 0.00 0.00 0.00 3.01
614 616 5.586243 CGAGTTCATCACATACCAAAAGGAT 59.414 40.000 0.00 0.00 0.00 3.24
615 617 4.935205 CGAGTTCATCACATACCAAAAGGA 59.065 41.667 0.00 0.00 0.00 3.36
616 618 4.695455 ACGAGTTCATCACATACCAAAAGG 59.305 41.667 0.00 0.00 0.00 3.11
617 619 5.639506 AGACGAGTTCATCACATACCAAAAG 59.360 40.000 0.00 0.00 0.00 2.27
618 620 5.547465 AGACGAGTTCATCACATACCAAAA 58.453 37.500 0.00 0.00 0.00 2.44
619 621 5.147330 AGACGAGTTCATCACATACCAAA 57.853 39.130 0.00 0.00 0.00 3.28
620 622 4.801330 AGACGAGTTCATCACATACCAA 57.199 40.909 0.00 0.00 0.00 3.67
621 623 4.674362 CGAAGACGAGTTCATCACATACCA 60.674 45.833 0.00 0.00 42.66 3.25
622 624 3.791887 CGAAGACGAGTTCATCACATACC 59.208 47.826 0.00 0.00 42.66 2.73
623 625 4.413087 ACGAAGACGAGTTCATCACATAC 58.587 43.478 0.00 0.00 42.66 2.39
624 626 4.696899 ACGAAGACGAGTTCATCACATA 57.303 40.909 0.00 0.00 42.66 2.29
625 627 3.577649 ACGAAGACGAGTTCATCACAT 57.422 42.857 0.00 0.00 42.66 3.21
626 628 3.364889 AACGAAGACGAGTTCATCACA 57.635 42.857 0.00 0.00 42.66 3.58
627 629 3.489785 ACAAACGAAGACGAGTTCATCAC 59.510 43.478 0.00 0.00 42.66 3.06
628 630 3.489416 CACAAACGAAGACGAGTTCATCA 59.511 43.478 0.00 0.00 42.66 3.07
629 631 3.734231 TCACAAACGAAGACGAGTTCATC 59.266 43.478 0.00 0.00 42.66 2.92
630 632 3.713288 TCACAAACGAAGACGAGTTCAT 58.287 40.909 0.00 0.00 42.66 2.57
631 633 3.153676 TCACAAACGAAGACGAGTTCA 57.846 42.857 0.00 0.00 42.66 3.18
632 634 3.734231 TCATCACAAACGAAGACGAGTTC 59.266 43.478 0.00 0.00 42.66 3.01
633 635 3.713288 TCATCACAAACGAAGACGAGTT 58.287 40.909 0.00 0.00 42.66 3.01
634 636 3.364889 TCATCACAAACGAAGACGAGT 57.635 42.857 0.00 0.00 42.66 4.18
635 637 4.169508 AGATCATCACAAACGAAGACGAG 58.830 43.478 0.00 0.00 42.66 4.18
636 638 4.166523 GAGATCATCACAAACGAAGACGA 58.833 43.478 0.00 0.00 42.66 4.20
637 639 3.920412 TGAGATCATCACAAACGAAGACG 59.080 43.478 0.00 0.00 38.10 4.18
638 640 5.845985 TTGAGATCATCACAAACGAAGAC 57.154 39.130 0.00 0.00 37.77 3.01
639 641 6.228273 GTTTGAGATCATCACAAACGAAGA 57.772 37.500 20.51 0.00 43.84 2.87
645 647 7.991084 AGAATCTGTTTGAGATCATCACAAA 57.009 32.000 6.18 6.18 40.89 2.83
646 648 7.446319 ACAAGAATCTGTTTGAGATCATCACAA 59.554 33.333 0.00 0.00 40.89 3.33
647 649 6.938596 ACAAGAATCTGTTTGAGATCATCACA 59.061 34.615 0.00 0.00 40.89 3.58
648 650 7.094890 ACACAAGAATCTGTTTGAGATCATCAC 60.095 37.037 0.00 0.00 40.89 3.06
649 651 6.938596 ACACAAGAATCTGTTTGAGATCATCA 59.061 34.615 0.00 0.00 40.89 3.07
650 652 7.118825 TCACACAAGAATCTGTTTGAGATCATC 59.881 37.037 0.00 0.00 40.89 2.92
651 653 6.938596 TCACACAAGAATCTGTTTGAGATCAT 59.061 34.615 0.00 0.00 40.89 2.45
652 654 6.290605 TCACACAAGAATCTGTTTGAGATCA 58.709 36.000 0.00 0.00 40.89 2.92
653 655 6.791887 TCACACAAGAATCTGTTTGAGATC 57.208 37.500 0.00 0.00 40.89 2.75
654 656 7.756395 AATCACACAAGAATCTGTTTGAGAT 57.244 32.000 7.40 0.00 43.91 2.75
655 657 7.572523 AAATCACACAAGAATCTGTTTGAGA 57.427 32.000 7.40 0.00 38.89 3.27
656 658 8.638685 AAAAATCACACAAGAATCTGTTTGAG 57.361 30.769 7.40 0.00 38.89 3.02
681 683 6.971602 TCAACGGTACTGCATAATTCAAAAA 58.028 32.000 0.23 0.00 0.00 1.94
682 684 6.561737 TCAACGGTACTGCATAATTCAAAA 57.438 33.333 0.23 0.00 0.00 2.44
683 685 6.428465 TCTTCAACGGTACTGCATAATTCAAA 59.572 34.615 0.23 0.00 0.00 2.69
684 686 5.935206 TCTTCAACGGTACTGCATAATTCAA 59.065 36.000 0.23 0.00 0.00 2.69
685 687 5.483811 TCTTCAACGGTACTGCATAATTCA 58.516 37.500 0.23 0.00 0.00 2.57
686 688 6.092259 ACTTCTTCAACGGTACTGCATAATTC 59.908 38.462 0.23 0.00 0.00 2.17
687 689 5.938125 ACTTCTTCAACGGTACTGCATAATT 59.062 36.000 0.23 0.00 0.00 1.40
688 690 5.488341 ACTTCTTCAACGGTACTGCATAAT 58.512 37.500 0.23 0.00 0.00 1.28
689 691 4.890088 ACTTCTTCAACGGTACTGCATAA 58.110 39.130 0.23 0.00 0.00 1.90
690 692 4.530710 ACTTCTTCAACGGTACTGCATA 57.469 40.909 0.23 0.00 0.00 3.14
691 693 3.402628 ACTTCTTCAACGGTACTGCAT 57.597 42.857 0.23 0.00 0.00 3.96
692 694 2.902705 ACTTCTTCAACGGTACTGCA 57.097 45.000 0.23 0.00 0.00 4.41
693 695 3.558418 TGAAACTTCTTCAACGGTACTGC 59.442 43.478 0.23 0.00 0.00 4.40
694 696 5.499047 GTTGAAACTTCTTCAACGGTACTG 58.501 41.667 12.97 0.00 45.63 2.74
695 697 5.729974 GTTGAAACTTCTTCAACGGTACT 57.270 39.130 12.97 0.00 45.63 2.73
702 704 5.630661 TTGTTCGGTTGAAACTTCTTCAA 57.369 34.783 0.00 0.00 35.46 2.69
703 705 5.630661 TTTGTTCGGTTGAAACTTCTTCA 57.369 34.783 0.00 0.00 35.46 3.02
704 706 6.972901 AGAATTTGTTCGGTTGAAACTTCTTC 59.027 34.615 0.00 0.00 35.46 2.87
705 707 6.863275 AGAATTTGTTCGGTTGAAACTTCTT 58.137 32.000 0.00 0.00 35.46 2.52
706 708 6.451064 AGAATTTGTTCGGTTGAAACTTCT 57.549 33.333 0.00 0.00 35.46 2.85
707 709 7.520119 AAAGAATTTGTTCGGTTGAAACTTC 57.480 32.000 0.00 0.00 36.60 3.01
708 710 7.899178 AAAAGAATTTGTTCGGTTGAAACTT 57.101 28.000 0.00 0.00 39.02 2.66
709 711 7.623297 GCAAAAAGAATTTGTTCGGTTGAAACT 60.623 33.333 3.22 0.00 39.02 2.66
710 712 6.464519 GCAAAAAGAATTTGTTCGGTTGAAAC 59.535 34.615 3.22 0.00 39.02 2.78
711 713 6.370166 AGCAAAAAGAATTTGTTCGGTTGAAA 59.630 30.769 3.22 0.00 39.02 2.69
712 714 5.872070 AGCAAAAAGAATTTGTTCGGTTGAA 59.128 32.000 3.22 0.00 39.02 2.69
713 715 5.415221 AGCAAAAAGAATTTGTTCGGTTGA 58.585 33.333 3.22 0.00 39.02 3.18
714 716 5.717038 AGCAAAAAGAATTTGTTCGGTTG 57.283 34.783 3.22 0.00 39.02 3.77
715 717 6.035975 CAGAAGCAAAAAGAATTTGTTCGGTT 59.964 34.615 3.22 0.00 39.02 4.44
716 718 5.519927 CAGAAGCAAAAAGAATTTGTTCGGT 59.480 36.000 3.22 0.00 39.02 4.69
717 719 5.519927 ACAGAAGCAAAAAGAATTTGTTCGG 59.480 36.000 3.22 8.08 39.02 4.30
718 720 6.573617 ACAGAAGCAAAAAGAATTTGTTCG 57.426 33.333 3.22 5.39 39.02 3.95
719 721 7.401860 GGAACAGAAGCAAAAAGAATTTGTTC 58.598 34.615 5.27 5.27 39.02 3.18
720 722 6.035975 CGGAACAGAAGCAAAAAGAATTTGTT 59.964 34.615 3.22 0.00 39.02 2.83
721 723 5.519927 CGGAACAGAAGCAAAAAGAATTTGT 59.480 36.000 3.22 0.00 39.02 2.83
722 724 5.050837 CCGGAACAGAAGCAAAAAGAATTTG 60.051 40.000 0.00 0.00 39.02 2.32
723 725 5.049828 CCGGAACAGAAGCAAAAAGAATTT 58.950 37.500 0.00 0.00 42.41 1.82
724 726 4.620982 CCGGAACAGAAGCAAAAAGAATT 58.379 39.130 0.00 0.00 0.00 2.17
725 727 3.552890 GCCGGAACAGAAGCAAAAAGAAT 60.553 43.478 5.05 0.00 0.00 2.40
726 728 2.223711 GCCGGAACAGAAGCAAAAAGAA 60.224 45.455 5.05 0.00 0.00 2.52
727 729 1.336755 GCCGGAACAGAAGCAAAAAGA 59.663 47.619 5.05 0.00 0.00 2.52
728 730 1.338020 AGCCGGAACAGAAGCAAAAAG 59.662 47.619 5.05 0.00 0.00 2.27
729 731 1.066908 CAGCCGGAACAGAAGCAAAAA 59.933 47.619 5.05 0.00 0.00 1.94
730 732 0.667993 CAGCCGGAACAGAAGCAAAA 59.332 50.000 5.05 0.00 0.00 2.44
731 733 0.179032 TCAGCCGGAACAGAAGCAAA 60.179 50.000 5.05 0.00 0.00 3.68
732 734 0.179032 TTCAGCCGGAACAGAAGCAA 60.179 50.000 5.05 0.00 0.00 3.91
733 735 0.603707 CTTCAGCCGGAACAGAAGCA 60.604 55.000 5.05 0.00 32.14 3.91
734 736 0.320771 TCTTCAGCCGGAACAGAAGC 60.321 55.000 5.05 0.00 37.86 3.86
735 737 1.674221 CCTCTTCAGCCGGAACAGAAG 60.674 57.143 5.05 12.23 38.98 2.85
736 738 0.321671 CCTCTTCAGCCGGAACAGAA 59.678 55.000 5.05 1.52 0.00 3.02
737 739 0.832135 ACCTCTTCAGCCGGAACAGA 60.832 55.000 5.05 0.00 0.00 3.41
738 740 0.035458 AACCTCTTCAGCCGGAACAG 59.965 55.000 5.05 0.00 0.00 3.16
739 741 0.034896 GAACCTCTTCAGCCGGAACA 59.965 55.000 5.05 0.00 0.00 3.18
740 742 0.673956 GGAACCTCTTCAGCCGGAAC 60.674 60.000 5.05 0.00 0.00 3.62
741 743 1.125093 TGGAACCTCTTCAGCCGGAA 61.125 55.000 5.05 0.00 0.00 4.30
742 744 1.125093 TTGGAACCTCTTCAGCCGGA 61.125 55.000 5.05 0.00 0.00 5.14
743 745 0.035056 ATTGGAACCTCTTCAGCCGG 60.035 55.000 0.00 0.00 0.00 6.13
754 756 7.222031 GCTAAATTGATTTTACGGATTGGAACC 59.778 37.037 0.00 0.00 0.00 3.62
762 764 5.866335 ACGTGCTAAATTGATTTTACGGA 57.134 34.783 16.93 0.00 36.08 4.69
805 807 7.495901 TCTTGCACATCCACTAAAATTCAAAA 58.504 30.769 0.00 0.00 0.00 2.44
838 840 0.037590 GGTTGTGGCAGGGTGACATA 59.962 55.000 0.00 0.00 37.93 2.29
895 897 1.228657 GGAGACAAGGGCAACGACAC 61.229 60.000 0.00 0.00 37.60 3.67
906 908 1.296715 CCCTTCCCGTGGAGACAAG 59.703 63.158 0.00 0.00 46.06 3.16
1112 1126 2.897326 TGGAGGATCAAACTCGAAGTGA 59.103 45.455 0.00 0.00 36.25 3.41
1130 1144 0.470080 GGATCAGATCTCGGGGTGGA 60.470 60.000 10.36 0.00 0.00 4.02
1519 1563 1.202830 AGCATACCAAAACCACGGTCA 60.203 47.619 0.00 0.00 36.69 4.02
1580 1624 0.030504 CACCGCACATGCTTTTCACA 59.969 50.000 1.82 0.00 39.32 3.58
1592 1636 3.702555 GCGACACTGACACCGCAC 61.703 66.667 0.00 0.00 46.04 5.34
1727 1771 3.165875 CATCGATACTGGACCCATACCT 58.834 50.000 0.00 0.00 0.00 3.08
1777 1821 0.179084 GGAAATCGTCCTCATCCGCA 60.179 55.000 0.00 0.00 43.98 5.69
1892 1936 9.646522 AATAATAAGAAGCACTTCCATGGTAAT 57.353 29.630 12.58 0.00 40.33 1.89
2075 2119 1.860950 CGCTCCGGATAGAACATGTTG 59.139 52.381 17.58 0.00 0.00 3.33
2169 2213 9.216117 ACAGTACAGATTAAAATTCCAGTGTAC 57.784 33.333 0.00 0.00 39.41 2.90
2255 2299 5.220529 GCACGTTTATATCACACCCTTGTAC 60.221 44.000 0.00 0.00 33.30 2.90
2695 2746 1.838112 TGGATCTTTGCACATCCACC 58.162 50.000 14.61 3.32 43.11 4.61
2735 2786 3.188460 GCTTGATCTCTTGCAAAACGGTA 59.812 43.478 0.00 0.00 0.00 4.02
2794 2845 9.903682 AACTGTTGAATTGATGATTTCAGTTAG 57.096 29.630 0.00 6.06 39.55 2.34
3126 3178 0.678395 AAAAATGCGATGCCACCACA 59.322 45.000 0.00 0.00 0.00 4.17
3480 3534 0.940126 GCTAGGTGCAACATGGATCG 59.060 55.000 3.64 0.00 39.98 3.69
3604 3658 3.070018 GGTAGACAGCATGCATATGACC 58.930 50.000 21.98 16.79 42.53 4.02
3663 3717 2.771089 TGAGAACCTGATGAGCACAAC 58.229 47.619 0.00 0.00 0.00 3.32
3720 3774 3.441572 GCAAGAACTGTTGCCATGAGTAT 59.558 43.478 0.00 0.00 46.00 2.12
3759 3813 2.396955 CCTGCAGCTGAAAGGCGAG 61.397 63.158 20.43 1.98 37.29 5.03
3762 3816 0.893447 AAATCCTGCAGCTGAAAGGC 59.107 50.000 24.27 8.34 0.00 4.35
3779 3836 7.829725 AGCAGAATACAGCATGAATTACAAAA 58.170 30.769 0.00 0.00 39.69 2.44
3862 3919 4.611943 GATACCGCGATGCATATACTCAT 58.388 43.478 8.23 0.00 0.00 2.90
3863 3920 3.486875 CGATACCGCGATGCATATACTCA 60.487 47.826 8.23 0.00 0.00 3.41
3864 3921 3.036633 CGATACCGCGATGCATATACTC 58.963 50.000 8.23 0.00 0.00 2.59
3865 3922 2.681344 TCGATACCGCGATGCATATACT 59.319 45.455 8.23 0.00 35.01 2.12
3866 3923 3.036633 CTCGATACCGCGATGCATATAC 58.963 50.000 8.23 0.00 39.85 1.47
3867 3924 2.032924 CCTCGATACCGCGATGCATATA 59.967 50.000 8.23 0.00 39.85 0.86
3868 3925 1.202302 CCTCGATACCGCGATGCATAT 60.202 52.381 8.23 0.00 39.85 1.78
3905 3962 7.090173 TCTGTTCACTTTCACTTTCTTTTTGG 58.910 34.615 0.00 0.00 0.00 3.28
3912 3969 3.565902 CCCCTCTGTTCACTTTCACTTTC 59.434 47.826 0.00 0.00 0.00 2.62
3913 3970 3.555966 CCCCTCTGTTCACTTTCACTTT 58.444 45.455 0.00 0.00 0.00 2.66
3914 3971 2.158608 CCCCCTCTGTTCACTTTCACTT 60.159 50.000 0.00 0.00 0.00 3.16
3915 3972 1.421646 CCCCCTCTGTTCACTTTCACT 59.578 52.381 0.00 0.00 0.00 3.41
3916 3973 1.897560 CCCCCTCTGTTCACTTTCAC 58.102 55.000 0.00 0.00 0.00 3.18
3972 4035 0.741221 GATGTCACCAGCGAGGGTTC 60.741 60.000 3.26 0.00 43.89 3.62
4023 4087 2.670934 CACTGCCCACCAGCACTC 60.671 66.667 0.00 0.00 45.78 3.51
4024 4088 3.170672 TCACTGCCCACCAGCACT 61.171 61.111 0.00 0.00 45.78 4.40
4025 4089 2.670934 CTCACTGCCCACCAGCAC 60.671 66.667 0.00 0.00 45.78 4.40
4026 4090 3.170672 ACTCACTGCCCACCAGCA 61.171 61.111 0.00 0.00 45.78 4.41
4027 4091 2.670934 CACTCACTGCCCACCAGC 60.671 66.667 0.00 0.00 45.78 4.85
4028 4092 3.480679 TGCACTCACTGCCCACCAG 62.481 63.158 0.00 0.00 46.51 4.00
4029 4093 3.487626 TGCACTCACTGCCCACCA 61.488 61.111 0.00 0.00 46.51 4.17
4030 4094 2.980233 GTGCACTCACTGCCCACC 60.980 66.667 10.32 0.00 46.51 4.61
4031 4095 2.980233 GGTGCACTCACTGCCCAC 60.980 66.667 17.98 0.00 46.51 4.61
4065 4129 4.752879 TCGGGTGGCTAGCAACGC 62.753 66.667 25.55 25.55 0.00 4.84
4066 4130 2.509336 CTCGGGTGGCTAGCAACG 60.509 66.667 18.24 14.33 0.00 4.10
4067 4131 2.820037 GCTCGGGTGGCTAGCAAC 60.820 66.667 18.24 16.27 36.26 4.17
4068 4132 4.451150 CGCTCGGGTGGCTAGCAA 62.451 66.667 18.24 0.85 35.98 3.91
4070 4134 4.874977 GTCGCTCGGGTGGCTAGC 62.875 72.222 6.04 6.04 0.00 3.42
4071 4135 4.554363 CGTCGCTCGGGTGGCTAG 62.554 72.222 0.00 0.00 35.71 3.42
4101 4165 5.296151 TCCTATGACCAATTGGATGTCTC 57.704 43.478 31.22 17.27 35.54 3.36
4102 4166 5.919348 ATCCTATGACCAATTGGATGTCT 57.081 39.130 31.22 7.98 45.70 3.41
4107 4171 4.017591 ACAACCATCCTATGACCAATTGGA 60.018 41.667 31.22 10.13 43.21 3.53
4117 4181 6.576662 ACTAGATCGTACAACCATCCTATG 57.423 41.667 0.00 0.00 0.00 2.23
4118 4182 6.776116 TGAACTAGATCGTACAACCATCCTAT 59.224 38.462 0.00 0.00 0.00 2.57
4152 4216 0.033504 ATCACACGACGGACAAAGCT 59.966 50.000 0.00 0.00 0.00 3.74
4156 4220 3.188773 GTGATCACACGACGGACAA 57.811 52.632 21.07 0.00 37.28 3.18
4165 4229 9.630098 AAAGATAAAATGTTCATGTGATCACAC 57.370 29.630 30.09 17.69 45.05 3.82
4206 4270 9.435688 GGGCACTTTTTATCTTCAATAACATTT 57.564 29.630 0.00 0.00 0.00 2.32
4216 4280 5.392057 GCTGTAGTGGGCACTTTTTATCTTC 60.392 44.000 0.00 0.00 42.54 2.87
4217 4281 4.459337 GCTGTAGTGGGCACTTTTTATCTT 59.541 41.667 0.00 0.00 42.54 2.40
4218 4282 4.010349 GCTGTAGTGGGCACTTTTTATCT 58.990 43.478 0.00 0.00 42.54 1.98
4219 4283 3.181510 CGCTGTAGTGGGCACTTTTTATC 60.182 47.826 0.00 0.00 42.54 1.75
4220 4284 2.747446 CGCTGTAGTGGGCACTTTTTAT 59.253 45.455 0.00 0.00 42.54 1.40
4221 4285 2.147958 CGCTGTAGTGGGCACTTTTTA 58.852 47.619 0.00 0.00 42.54 1.52
4222 4286 0.951558 CGCTGTAGTGGGCACTTTTT 59.048 50.000 0.00 0.00 42.54 1.94
4223 4287 0.889186 CCGCTGTAGTGGGCACTTTT 60.889 55.000 3.52 0.00 42.54 2.27
4224 4288 1.302511 CCGCTGTAGTGGGCACTTT 60.303 57.895 3.52 0.00 42.54 2.66
4225 4289 2.172483 CTCCGCTGTAGTGGGCACTT 62.172 60.000 11.30 0.00 45.45 3.16
4226 4290 2.603473 TCCGCTGTAGTGGGCACT 60.603 61.111 11.30 0.00 45.45 4.40
4227 4291 2.125512 CTCCGCTGTAGTGGGCAC 60.126 66.667 11.30 0.00 45.45 5.01
4228 4292 2.167398 GAACTCCGCTGTAGTGGGCA 62.167 60.000 11.30 0.00 45.45 5.36
4229 4293 1.448013 GAACTCCGCTGTAGTGGGC 60.448 63.158 11.30 0.00 45.45 5.36
4230 4294 1.218316 GGAACTCCGCTGTAGTGGG 59.782 63.158 11.30 5.28 45.45 4.61
4231 4295 0.389948 GTGGAACTCCGCTGTAGTGG 60.390 60.000 5.11 5.11 46.72 4.00
4232 4296 0.317160 TGTGGAACTCCGCTGTAGTG 59.683 55.000 10.53 0.00 46.36 2.74
4233 4297 1.066858 CATGTGGAACTCCGCTGTAGT 60.067 52.381 10.53 0.00 46.36 2.73
4234 4298 1.066858 ACATGTGGAACTCCGCTGTAG 60.067 52.381 10.53 1.28 46.36 2.74
4235 4299 0.973632 ACATGTGGAACTCCGCTGTA 59.026 50.000 10.53 0.00 46.36 2.74
4236 4300 0.603707 CACATGTGGAACTCCGCTGT 60.604 55.000 18.51 9.05 46.36 4.40
4237 4301 1.915614 GCACATGTGGAACTCCGCTG 61.916 60.000 26.55 8.50 46.36 5.18
4238 4302 1.672356 GCACATGTGGAACTCCGCT 60.672 57.895 26.55 0.00 46.36 5.52
4239 4303 2.690778 GGCACATGTGGAACTCCGC 61.691 63.158 26.55 9.83 46.40 5.54
4240 4304 2.040544 GGGCACATGTGGAACTCCG 61.041 63.158 26.55 0.00 39.43 4.63
4241 4305 1.074775 TGGGCACATGTGGAACTCC 59.925 57.895 26.55 17.80 38.04 3.85
4242 4306 1.244019 GGTGGGCACATGTGGAACTC 61.244 60.000 26.55 11.15 38.04 3.01
4243 4307 1.228552 GGTGGGCACATGTGGAACT 60.229 57.895 26.55 0.00 38.04 3.01
4244 4308 2.275380 GGGTGGGCACATGTGGAAC 61.275 63.158 26.55 10.47 37.35 3.62
4245 4309 2.117206 GGGTGGGCACATGTGGAA 59.883 61.111 26.55 0.00 0.00 3.53
4246 4310 3.181530 TGGGTGGGCACATGTGGA 61.182 61.111 26.55 0.00 0.00 4.02
4247 4311 2.990967 GTGGGTGGGCACATGTGG 60.991 66.667 26.55 9.24 0.00 4.17
4248 4312 3.364441 CGTGGGTGGGCACATGTG 61.364 66.667 21.83 21.83 30.61 3.21
4251 4315 3.808218 AAAGCGTGGGTGGGCACAT 62.808 57.895 0.00 0.00 0.00 3.21
4252 4316 4.514585 AAAGCGTGGGTGGGCACA 62.515 61.111 0.00 0.00 0.00 4.57
4253 4317 3.670377 GAAAGCGTGGGTGGGCAC 61.670 66.667 0.00 0.00 0.00 5.01
4254 4318 4.966787 GGAAAGCGTGGGTGGGCA 62.967 66.667 0.00 0.00 0.00 5.36
4257 4321 3.920093 GAGGGGAAAGCGTGGGTGG 62.920 68.421 0.00 0.00 0.00 4.61
4258 4322 2.359975 GAGGGGAAAGCGTGGGTG 60.360 66.667 0.00 0.00 0.00 4.61
4259 4323 4.016706 CGAGGGGAAAGCGTGGGT 62.017 66.667 0.00 0.00 0.00 4.51
4310 4374 2.778679 GCGTTGAAGCTACCGCAG 59.221 61.111 12.49 0.00 45.12 5.18
4312 4376 2.434359 AGGCGTTGAAGCTACCGC 60.434 61.111 9.82 9.82 45.05 5.68
4313 4377 1.810030 GGAGGCGTTGAAGCTACCG 60.810 63.158 0.00 0.00 37.29 4.02
4314 4378 0.741221 CAGGAGGCGTTGAAGCTACC 60.741 60.000 0.00 0.00 37.29 3.18
4315 4379 0.741221 CCAGGAGGCGTTGAAGCTAC 60.741 60.000 0.00 0.00 37.29 3.58
4316 4380 1.192146 ACCAGGAGGCGTTGAAGCTA 61.192 55.000 0.00 0.00 39.06 3.32
4317 4381 2.056906 AACCAGGAGGCGTTGAAGCT 62.057 55.000 0.00 0.00 39.06 3.74
4318 4382 1.578206 GAACCAGGAGGCGTTGAAGC 61.578 60.000 0.00 0.00 39.06 3.86
4319 4383 0.250295 TGAACCAGGAGGCGTTGAAG 60.250 55.000 0.00 0.00 39.06 3.02
4320 4384 0.400213 ATGAACCAGGAGGCGTTGAA 59.600 50.000 0.00 0.00 39.06 2.69
4321 4385 0.321564 CATGAACCAGGAGGCGTTGA 60.322 55.000 0.00 0.00 39.06 3.18
4322 4386 1.926511 GCATGAACCAGGAGGCGTTG 61.927 60.000 0.00 0.00 39.06 4.10
4323 4387 1.675641 GCATGAACCAGGAGGCGTT 60.676 57.895 0.00 0.00 39.06 4.84
4324 4388 2.045926 GCATGAACCAGGAGGCGT 60.046 61.111 0.00 0.00 39.06 5.68
4325 4389 2.825836 GGCATGAACCAGGAGGCG 60.826 66.667 0.00 0.00 39.06 5.52
4326 4390 2.440980 GGGCATGAACCAGGAGGC 60.441 66.667 0.00 0.00 39.06 4.70
4327 4391 2.276740 GGGGCATGAACCAGGAGG 59.723 66.667 0.00 0.00 42.21 4.30
4328 4392 1.077212 CAGGGGCATGAACCAGGAG 60.077 63.158 0.00 0.00 0.00 3.69
4329 4393 3.089838 CAGGGGCATGAACCAGGA 58.910 61.111 0.00 0.00 0.00 3.86
4330 4394 2.757099 GCAGGGGCATGAACCAGG 60.757 66.667 0.00 0.00 40.72 4.45
4331 4395 2.757099 GGCAGGGGCATGAACCAG 60.757 66.667 0.00 0.00 43.71 4.00
4332 4396 4.738998 CGGCAGGGGCATGAACCA 62.739 66.667 0.00 0.00 43.71 3.67
4420 4484 2.890847 ATCTGAAAGCGCCGAGGTCG 62.891 60.000 2.29 0.00 39.44 4.79
4421 4485 1.148759 GATCTGAAAGCGCCGAGGTC 61.149 60.000 2.29 0.00 0.00 3.85
4422 4486 1.153549 GATCTGAAAGCGCCGAGGT 60.154 57.895 2.29 0.00 0.00 3.85
4423 4487 0.873743 GAGATCTGAAAGCGCCGAGG 60.874 60.000 2.29 0.00 0.00 4.63
4424 4488 1.205485 CGAGATCTGAAAGCGCCGAG 61.205 60.000 2.29 0.00 0.00 4.63
4425 4489 1.226688 CGAGATCTGAAAGCGCCGA 60.227 57.895 2.29 0.00 0.00 5.54
4426 4490 0.596083 ATCGAGATCTGAAAGCGCCG 60.596 55.000 2.29 0.00 0.00 6.46
4427 4491 1.135867 GATCGAGATCTGAAAGCGCC 58.864 55.000 2.29 0.00 35.04 6.53
4428 4492 1.135867 GGATCGAGATCTGAAAGCGC 58.864 55.000 0.00 0.00 37.92 5.92



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.