Multiple sequence alignment - TraesCS7A01G278500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G278500 chr7A 100.000 6260 0 0 1 6260 294404666 294410925 0.000000e+00 11561.0
1 TraesCS7A01G278500 chr7A 93.023 129 9 0 356 484 65152860 65152988 8.280000e-44 189.0
2 TraesCS7A01G278500 chr7A 93.333 45 2 1 178 221 555432524 555432480 1.460000e-06 65.8
3 TraesCS7A01G278500 chr7D 93.289 3308 104 47 2999 6260 268549094 268552329 0.000000e+00 4771.0
4 TraesCS7A01G278500 chr7D 93.884 1357 39 20 617 1956 268547075 268548404 0.000000e+00 2006.0
5 TraesCS7A01G278500 chr7D 89.852 542 33 10 2038 2569 268548403 268548932 0.000000e+00 676.0
6 TraesCS7A01G278500 chr7D 92.523 321 20 4 1 319 268333983 268334301 2.060000e-124 457.0
7 TraesCS7A01G278500 chr7D 92.014 288 18 5 1 285 268337129 268337414 3.520000e-107 399.0
8 TraesCS7A01G278500 chr7D 90.580 138 7 2 472 609 268546205 268546336 1.790000e-40 178.0
9 TraesCS7A01G278500 chr7D 93.333 120 8 0 358 477 471475448 471475329 1.790000e-40 178.0
10 TraesCS7A01G278500 chr7D 85.484 124 13 3 2907 3030 268548970 268549088 2.370000e-24 124.0
11 TraesCS7A01G278500 chr7B 91.967 3436 102 78 2908 6260 248543236 248546580 0.000000e+00 4656.0
12 TraesCS7A01G278500 chr7B 93.074 1285 41 18 697 1956 248541451 248542712 0.000000e+00 1836.0
13 TraesCS7A01G278500 chr7B 87.409 548 33 12 2038 2578 248542711 248543229 1.160000e-166 597.0
14 TraesCS7A01G278500 chr7B 88.539 349 34 4 1 347 248512634 248512978 9.710000e-113 418.0
15 TraesCS7A01G278500 chr7B 87.538 329 37 3 2581 2909 435675956 435675632 1.650000e-100 377.0
16 TraesCS7A01G278500 chr7B 86.567 335 39 5 2581 2914 474288441 474288770 1.280000e-96 364.0
17 TraesCS7A01G278500 chr7B 86.755 151 8 4 474 619 248535311 248535454 2.340000e-34 158.0
18 TraesCS7A01G278500 chr7B 96.825 63 2 0 618 680 248540229 248540291 8.580000e-19 106.0
19 TraesCS7A01G278500 chr7B 97.297 37 1 0 228 264 315316919 315316883 5.240000e-06 63.9
20 TraesCS7A01G278500 chr5B 92.508 307 23 0 2100 2406 146124332 146124026 2.070000e-119 440.0
21 TraesCS7A01G278500 chr5B 92.233 103 7 1 1954 2056 244125105 244125004 1.820000e-30 145.0
22 TraesCS7A01G278500 chr5B 92.233 103 6 2 1954 2054 546992568 546992670 1.820000e-30 145.0
23 TraesCS7A01G278500 chr5B 89.041 73 4 3 37 107 277263068 277262998 3.110000e-13 87.9
24 TraesCS7A01G278500 chrUn 92.014 288 18 5 1 285 320978927 320979212 3.520000e-107 399.0
25 TraesCS7A01G278500 chr5A 87.651 332 36 3 2581 2911 558174646 558174319 1.270000e-101 381.0
26 TraesCS7A01G278500 chr5A 93.443 122 8 0 358 479 505594259 505594138 1.390000e-41 182.0
27 TraesCS7A01G278500 chr3B 87.273 330 39 2 2581 2910 369098419 369098093 2.130000e-99 374.0
28 TraesCS7A01G278500 chr3B 87.234 329 37 4 2583 2910 344956721 344956397 2.760000e-98 370.0
29 TraesCS7A01G278500 chr3B 86.930 329 39 3 2581 2909 245527865 245527541 3.570000e-97 366.0
30 TraesCS7A01G278500 chr3B 89.381 113 7 5 1951 2062 15762503 15762611 3.040000e-28 137.0
31 TraesCS7A01G278500 chr6B 86.930 329 40 2 2581 2909 377824623 377824948 3.570000e-97 366.0
32 TraesCS7A01G278500 chr6B 88.136 59 7 0 178 236 560196924 560196866 3.130000e-08 71.3
33 TraesCS7A01G278500 chr4A 86.647 337 36 7 2575 2909 110087740 110087411 1.280000e-96 364.0
34 TraesCS7A01G278500 chr4A 86.607 336 37 6 2575 2909 110088268 110087940 1.280000e-96 364.0
35 TraesCS7A01G278500 chr6A 93.333 120 8 0 357 476 448220791 448220910 1.790000e-40 178.0
36 TraesCS7A01G278500 chr6A 96.774 93 3 0 1950 2042 374418716 374418808 8.400000e-34 156.0
37 TraesCS7A01G278500 chr3D 93.277 119 8 0 358 476 473682291 473682173 6.450000e-40 176.0
38 TraesCS7A01G278500 chr3D 91.200 125 11 0 358 482 607000538 607000662 3.000000e-38 171.0
39 TraesCS7A01G278500 chr3D 95.789 95 3 1 1950 2043 56336969 56336875 1.090000e-32 152.0
40 TraesCS7A01G278500 chr2D 93.277 119 8 0 358 476 218930353 218930235 6.450000e-40 176.0
41 TraesCS7A01G278500 chr2A 93.220 118 8 0 357 474 175483473 175483356 2.320000e-39 174.0
42 TraesCS7A01G278500 chr2A 93.220 118 8 0 358 475 429716170 429716287 2.320000e-39 174.0
43 TraesCS7A01G278500 chr2A 90.991 111 5 5 1953 2060 17889427 17889319 1.820000e-30 145.0
44 TraesCS7A01G278500 chr3A 97.849 93 2 0 1954 2046 51753329 51753237 1.810000e-35 161.0
45 TraesCS7A01G278500 chr3A 95.745 94 4 0 1950 2043 648870535 648870442 1.090000e-32 152.0
46 TraesCS7A01G278500 chr3A 93.182 44 3 0 178 221 23847685 23847728 1.460000e-06 65.8
47 TraesCS7A01G278500 chr3A 93.182 44 3 0 178 221 337763051 337763094 1.460000e-06 65.8
48 TraesCS7A01G278500 chr2B 94.845 97 3 2 1951 2046 799107604 799107699 3.910000e-32 150.0
49 TraesCS7A01G278500 chr5D 80.165 121 21 3 36 155 133285723 133285605 3.110000e-13 87.9
50 TraesCS7A01G278500 chr4D 76.812 138 26 6 4250 4384 453221312 453221446 8.700000e-09 73.1
51 TraesCS7A01G278500 chr1A 93.333 45 3 0 178 222 504573614 504573570 4.050000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G278500 chr7A 294404666 294410925 6259 False 11561.00 11561 100.00000 1 6260 1 chr7A.!!$F2 6259
1 TraesCS7A01G278500 chr7D 268546205 268552329 6124 False 1551.00 4771 90.61780 472 6260 5 chr7D.!!$F2 5788
2 TraesCS7A01G278500 chr7D 268333983 268337414 3431 False 428.00 457 92.26850 1 319 2 chr7D.!!$F1 318
3 TraesCS7A01G278500 chr7B 248540229 248546580 6351 False 1798.75 4656 92.31875 618 6260 4 chr7B.!!$F4 5642
4 TraesCS7A01G278500 chr4A 110087411 110088268 857 True 364.00 364 86.62700 2575 2909 2 chr4A.!!$R1 334

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
555 557 0.302890 CGAGATCGAAGGCAATGTGC 59.697 55.000 0.00 0.0 41.85 4.57 F
1966 5473 0.338814 ACCCATCTACTCCCTCCGTT 59.661 55.000 0.00 0.0 0.00 4.44 F
2410 5926 0.171231 CGTGGTCAATCGCTCAGAGA 59.829 55.000 0.00 0.0 0.00 3.10 F
2670 6216 0.187606 TAGGCTCGGATAGGGAAGCA 59.812 55.000 0.00 0.0 0.00 3.91 F
2698 6244 0.250295 TTCAGAAGACGGGTGCTTGG 60.250 55.000 0.00 0.0 0.00 3.61 F
3185 7289 0.322187 GCAATTCACCACTACGGGGT 60.322 55.000 0.00 0.0 40.26 4.95 F
3309 7413 0.682852 TGGTAGGTTTGTCTGTCCGG 59.317 55.000 0.00 0.0 0.00 5.14 F
3327 7431 0.801067 GGTCGTCCTTCGTCCAATCG 60.801 60.000 0.00 0.0 44.61 3.34 F
3989 8111 1.002773 TGCTGAGCTGAATTGCTGAGA 59.997 47.619 5.83 0.0 45.00 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2026 5533 0.033405 TGCTAGCTACTCCCTCCGTT 60.033 55.000 17.23 0.0 0.00 4.44 R
3309 7413 0.109412 ACGATTGGACGAAGGACGAC 60.109 55.000 0.00 0.0 45.77 4.34 R
3382 7499 1.059979 TGATTAATCGTGCGTTGCGAC 59.940 47.619 10.80 0.0 41.33 5.19 R
4187 8309 1.379044 CATGCCTTTCCGCTCCCTT 60.379 57.895 0.00 0.0 0.00 3.95 R
4751 8873 7.926018 AGACAGAGAAGAGAAGAGAAAAGAAAC 59.074 37.037 0.00 0.0 0.00 2.78 R
4908 9068 1.664659 CGGTTGAGATCGTCGTAGAGT 59.335 52.381 0.00 0.0 36.95 3.24 R
5046 9206 2.167662 TGAGACGTGAAGGACATGCTA 58.832 47.619 0.00 0.0 38.94 3.49 R
5166 9330 6.267242 TCTTGGGATCAAAATTGAACATGTCA 59.733 34.615 0.00 0.0 41.13 3.58 R
5778 10055 0.314935 CGTTGCTTTGTGCCCATCTT 59.685 50.000 0.00 0.0 42.00 2.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 9.101325 TCCTTCGGTTCATAGGATAGAAATATT 57.899 33.333 0.00 0.00 33.23 1.28
183 185 8.434589 AAAATCCATTGAATTCAGGTAGGAAA 57.565 30.769 18.10 0.67 0.00 3.13
314 316 5.449177 GGTGAACTAGTACCGGTGTATACAC 60.449 48.000 25.00 25.00 45.72 2.90
315 317 5.355350 GTGAACTAGTACCGGTGTATACACT 59.645 44.000 29.89 14.22 45.73 3.55
327 329 6.989437 CGGTGTATACACTGTAGTTTTCATG 58.011 40.000 29.29 6.16 45.65 3.07
330 332 8.227791 GGTGTATACACTGTAGTTTTCATGTTG 58.772 37.037 29.89 0.00 45.73 3.33
332 334 9.332502 TGTATACACTGTAGTTTTCATGTTGTT 57.667 29.630 0.08 0.00 0.00 2.83
333 335 9.594038 GTATACACTGTAGTTTTCATGTTGTTG 57.406 33.333 0.00 0.00 0.00 3.33
334 336 5.339990 ACACTGTAGTTTTCATGTTGTTGC 58.660 37.500 0.00 0.00 0.00 4.17
335 337 5.105957 ACACTGTAGTTTTCATGTTGTTGCA 60.106 36.000 0.00 0.00 0.00 4.08
337 339 5.978919 ACTGTAGTTTTCATGTTGTTGCATG 59.021 36.000 0.00 0.00 45.48 4.06
350 352 4.060372 GCATGATGCAGGCTCGAT 57.940 55.556 13.36 0.00 44.26 3.59
351 353 3.222053 GCATGATGCAGGCTCGATA 57.778 52.632 13.36 0.00 44.26 2.92
352 354 1.077123 GCATGATGCAGGCTCGATAG 58.923 55.000 13.36 0.00 44.26 2.08
354 356 0.612229 ATGATGCAGGCTCGATAGGG 59.388 55.000 0.00 0.00 42.12 3.53
363 365 2.255430 CTCGATAGGGCGTACTCCC 58.745 63.158 13.42 13.42 46.93 4.30
370 372 3.525545 GGCGTACTCCCTCCGTCC 61.526 72.222 0.00 0.00 0.00 4.79
371 373 2.753043 GCGTACTCCCTCCGTCCA 60.753 66.667 0.00 0.00 0.00 4.02
373 375 1.880819 GCGTACTCCCTCCGTCCAAA 61.881 60.000 0.00 0.00 0.00 3.28
374 376 0.604578 CGTACTCCCTCCGTCCAAAA 59.395 55.000 0.00 0.00 0.00 2.44
375 377 1.001181 CGTACTCCCTCCGTCCAAAAA 59.999 52.381 0.00 0.00 0.00 1.94
378 380 3.345508 ACTCCCTCCGTCCAAAAATAC 57.654 47.619 0.00 0.00 0.00 1.89
380 382 3.329814 ACTCCCTCCGTCCAAAAATACTT 59.670 43.478 0.00 0.00 0.00 2.24
381 383 3.681593 TCCCTCCGTCCAAAAATACTTG 58.318 45.455 0.00 0.00 0.00 3.16
382 384 3.073356 TCCCTCCGTCCAAAAATACTTGT 59.927 43.478 0.00 0.00 0.00 3.16
383 385 3.439129 CCCTCCGTCCAAAAATACTTGTC 59.561 47.826 0.00 0.00 0.00 3.18
384 386 4.069304 CCTCCGTCCAAAAATACTTGTCA 58.931 43.478 0.00 0.00 0.00 3.58
386 388 5.878116 CCTCCGTCCAAAAATACTTGTCATA 59.122 40.000 0.00 0.00 0.00 2.15
389 391 7.162761 TCCGTCCAAAAATACTTGTCATAGAA 58.837 34.615 0.00 0.00 0.00 2.10
391 393 8.458843 CCGTCCAAAAATACTTGTCATAGAAAT 58.541 33.333 0.00 0.00 0.00 2.17
392 394 9.277565 CGTCCAAAAATACTTGTCATAGAAATG 57.722 33.333 0.00 0.00 0.00 2.32
446 448 6.090483 ACATCTAGGTACATTCATTCCTCG 57.910 41.667 0.00 0.00 0.00 4.63
447 449 5.011125 ACATCTAGGTACATTCATTCCTCGG 59.989 44.000 0.00 0.00 0.00 4.63
448 450 4.800023 TCTAGGTACATTCATTCCTCGGA 58.200 43.478 0.00 0.00 0.00 4.55
449 451 3.821421 AGGTACATTCATTCCTCGGAC 57.179 47.619 0.00 0.00 0.00 4.79
452 454 3.871594 GGTACATTCATTCCTCGGACAAG 59.128 47.826 0.00 0.00 0.00 3.16
454 456 4.819105 ACATTCATTCCTCGGACAAGTA 57.181 40.909 0.00 0.00 0.00 2.24
456 458 5.745227 ACATTCATTCCTCGGACAAGTATT 58.255 37.500 0.00 0.00 0.00 1.89
457 459 6.180472 ACATTCATTCCTCGGACAAGTATTT 58.820 36.000 0.00 0.00 0.00 1.40
458 460 6.316390 ACATTCATTCCTCGGACAAGTATTTC 59.684 38.462 0.00 0.00 0.00 2.17
460 462 5.419542 TCATTCCTCGGACAAGTATTTCAG 58.580 41.667 0.00 0.00 0.00 3.02
461 463 3.887621 TCCTCGGACAAGTATTTCAGG 57.112 47.619 0.00 0.00 0.00 3.86
462 464 3.437213 TCCTCGGACAAGTATTTCAGGA 58.563 45.455 0.00 0.00 0.00 3.86
463 465 4.030913 TCCTCGGACAAGTATTTCAGGAT 58.969 43.478 0.00 0.00 0.00 3.24
464 466 4.122776 CCTCGGACAAGTATTTCAGGATG 58.877 47.826 0.00 0.00 37.54 3.51
465 467 4.122776 CTCGGACAAGTATTTCAGGATGG 58.877 47.826 0.00 0.00 36.16 3.51
466 468 3.772572 TCGGACAAGTATTTCAGGATGGA 59.227 43.478 0.00 0.00 36.16 3.41
467 469 4.122776 CGGACAAGTATTTCAGGATGGAG 58.877 47.826 0.00 0.00 36.16 3.86
468 470 4.455606 GGACAAGTATTTCAGGATGGAGG 58.544 47.826 0.00 0.00 36.16 4.30
469 471 4.164221 GGACAAGTATTTCAGGATGGAGGA 59.836 45.833 0.00 0.00 36.16 3.71
470 472 5.339200 GGACAAGTATTTCAGGATGGAGGAA 60.339 44.000 0.00 0.00 36.16 3.36
515 517 2.447811 AGGCCCTTGGTTAAAACTGGTA 59.552 45.455 0.00 0.00 0.00 3.25
518 520 3.504906 GCCCTTGGTTAAAACTGGTACTC 59.495 47.826 0.00 0.00 0.00 2.59
521 523 5.013391 CCCTTGGTTAAAACTGGTACTCCTA 59.987 44.000 0.00 0.00 34.23 2.94
522 524 6.171213 CCTTGGTTAAAACTGGTACTCCTAG 58.829 44.000 0.00 0.00 34.23 3.02
523 525 5.156608 TGGTTAAAACTGGTACTCCTAGC 57.843 43.478 0.00 0.00 34.23 3.42
555 557 0.302890 CGAGATCGAAGGCAATGTGC 59.697 55.000 0.00 0.00 41.85 4.57
597 599 9.912634 TTGTGCTTAATTAAGGATTCTTGAAAG 57.087 29.630 23.37 0.05 36.07 2.62
599 601 9.780413 GTGCTTAATTAAGGATTCTTGAAAGAG 57.220 33.333 23.37 0.00 36.07 2.85
601 603 7.641802 GCTTAATTAAGGATTCTTGAAAGAGCG 59.358 37.037 23.37 0.00 33.68 5.03
609 611 5.291371 GGATTCTTGAAAGAGCGGTAGTAAC 59.709 44.000 0.00 0.00 36.22 2.50
615 617 6.028146 TGAAAGAGCGGTAGTAACAACATA 57.972 37.500 0.00 0.00 0.00 2.29
680 1550 1.673168 CCAGCTGTTTCTAGGCATCC 58.327 55.000 13.81 0.00 0.00 3.51
681 1551 1.065199 CCAGCTGTTTCTAGGCATCCA 60.065 52.381 13.81 0.00 0.00 3.41
682 1552 2.422519 CCAGCTGTTTCTAGGCATCCAT 60.423 50.000 13.81 0.00 0.00 3.41
683 1553 2.877168 CAGCTGTTTCTAGGCATCCATC 59.123 50.000 5.25 0.00 0.00 3.51
869 3844 2.428890 CACTCCTCACTGGATCACTACC 59.571 54.545 0.00 0.00 45.16 3.18
877 3852 3.065510 CACTGGATCACTACCACTACTCG 59.934 52.174 0.00 0.00 33.57 4.18
952 4180 2.158158 TCCTTGTCTCTGGAGGAGGAAA 60.158 50.000 12.35 0.00 42.10 3.13
1149 4386 1.227292 GCCGACTGCTAAGTAGGGC 60.227 63.158 7.07 6.04 46.36 5.19
1167 4408 4.879598 AGGGCACTATACGTGTTATTAGC 58.120 43.478 0.00 0.00 45.57 3.09
1290 4532 4.751600 TGATGCATGGCTAATTAACGAGAG 59.248 41.667 2.46 0.00 0.00 3.20
1300 4543 0.963962 TTAACGAGAGGACGGCTTGT 59.036 50.000 0.00 0.00 37.61 3.16
1493 4736 6.169557 TCTTGCTAAACTAACTCACTCCAA 57.830 37.500 0.00 0.00 0.00 3.53
1509 4752 5.244402 TCACTCCAAGTTACTTGAACGGATA 59.756 40.000 24.79 3.15 43.42 2.59
1510 4753 5.577164 CACTCCAAGTTACTTGAACGGATAG 59.423 44.000 24.79 12.29 43.42 2.08
1511 4754 5.080969 TCCAAGTTACTTGAACGGATAGG 57.919 43.478 24.79 6.36 43.42 2.57
1521 4766 1.485066 GAACGGATAGGTCATGGGTGT 59.515 52.381 0.00 0.00 36.33 4.16
1532 4784 1.074775 ATGGGTGTCCGTGTGCATT 59.925 52.632 0.00 0.00 35.24 3.56
1596 5103 4.080751 TCTGAGTGGATTTCTCATGCATGA 60.081 41.667 27.10 27.10 40.46 3.07
1634 5141 2.941333 GCACATCATGCGATCCGG 59.059 61.111 0.00 0.00 46.55 5.14
1714 5221 2.178235 GGAATTACTCGCCCCACGC 61.178 63.158 0.00 0.00 43.23 5.34
1738 5245 4.089361 TCTCTTTCACTCCTCAGCACATA 58.911 43.478 0.00 0.00 0.00 2.29
1758 5265 6.089954 CACATATTGTATCGTGTAGCTCCATG 59.910 42.308 0.00 0.00 0.00 3.66
1900 5407 1.805943 CAAGCCATCAATGTGTGACGA 59.194 47.619 0.00 0.00 39.72 4.20
1954 5461 1.030457 GTCGTCGTCCATACCCATCT 58.970 55.000 0.00 0.00 0.00 2.90
1955 5462 2.224606 GTCGTCGTCCATACCCATCTA 58.775 52.381 0.00 0.00 0.00 1.98
1956 5463 2.031333 GTCGTCGTCCATACCCATCTAC 60.031 54.545 0.00 0.00 0.00 2.59
1957 5464 2.158711 TCGTCGTCCATACCCATCTACT 60.159 50.000 0.00 0.00 0.00 2.57
1958 5465 2.225963 CGTCGTCCATACCCATCTACTC 59.774 54.545 0.00 0.00 0.00 2.59
1959 5466 2.557490 GTCGTCCATACCCATCTACTCC 59.443 54.545 0.00 0.00 0.00 3.85
1960 5467 1.893801 CGTCCATACCCATCTACTCCC 59.106 57.143 0.00 0.00 0.00 4.30
1961 5468 2.491086 CGTCCATACCCATCTACTCCCT 60.491 54.545 0.00 0.00 0.00 4.20
1962 5469 3.166679 GTCCATACCCATCTACTCCCTC 58.833 54.545 0.00 0.00 0.00 4.30
1963 5470 2.111972 TCCATACCCATCTACTCCCTCC 59.888 54.545 0.00 0.00 0.00 4.30
1964 5471 2.171840 CATACCCATCTACTCCCTCCG 58.828 57.143 0.00 0.00 0.00 4.63
1965 5472 1.229131 TACCCATCTACTCCCTCCGT 58.771 55.000 0.00 0.00 0.00 4.69
1966 5473 0.338814 ACCCATCTACTCCCTCCGTT 59.661 55.000 0.00 0.00 0.00 4.44
1967 5474 1.041437 CCCATCTACTCCCTCCGTTC 58.959 60.000 0.00 0.00 0.00 3.95
1968 5475 1.041437 CCATCTACTCCCTCCGTTCC 58.959 60.000 0.00 0.00 0.00 3.62
1969 5476 1.688311 CCATCTACTCCCTCCGTTCCA 60.688 57.143 0.00 0.00 0.00 3.53
1970 5477 2.108168 CATCTACTCCCTCCGTTCCAA 58.892 52.381 0.00 0.00 0.00 3.53
1971 5478 2.314071 TCTACTCCCTCCGTTCCAAA 57.686 50.000 0.00 0.00 0.00 3.28
1972 5479 2.612000 TCTACTCCCTCCGTTCCAAAA 58.388 47.619 0.00 0.00 0.00 2.44
1973 5480 3.178865 TCTACTCCCTCCGTTCCAAAAT 58.821 45.455 0.00 0.00 0.00 1.82
1974 5481 4.355549 TCTACTCCCTCCGTTCCAAAATA 58.644 43.478 0.00 0.00 0.00 1.40
1975 5482 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
1976 5483 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
1977 5484 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
1978 5485 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
1979 5486 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
1980 5487 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
1981 5488 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
1982 5489 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
1983 5490 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
1984 5491 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
1985 5492 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
1986 5493 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
1987 5494 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
1988 5495 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
1989 5496 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
1990 5497 6.310941 TCCAAAATAGATGACCCAACTTTGA 58.689 36.000 0.00 0.00 0.00 2.69
1991 5498 6.780031 TCCAAAATAGATGACCCAACTTTGAA 59.220 34.615 0.00 0.00 0.00 2.69
1992 5499 6.868339 CCAAAATAGATGACCCAACTTTGAAC 59.132 38.462 0.00 0.00 0.00 3.18
1993 5500 7.255942 CCAAAATAGATGACCCAACTTTGAACT 60.256 37.037 0.00 0.00 0.00 3.01
1994 5501 8.792633 CAAAATAGATGACCCAACTTTGAACTA 58.207 33.333 0.00 0.00 0.00 2.24
1995 5502 8.934023 AAATAGATGACCCAACTTTGAACTAA 57.066 30.769 0.00 0.00 0.00 2.24
1996 5503 7.923414 ATAGATGACCCAACTTTGAACTAAC 57.077 36.000 0.00 0.00 0.00 2.34
1997 5504 5.941788 AGATGACCCAACTTTGAACTAACT 58.058 37.500 0.00 0.00 0.00 2.24
1998 5505 6.365520 AGATGACCCAACTTTGAACTAACTT 58.634 36.000 0.00 0.00 0.00 2.66
1999 5506 7.514721 AGATGACCCAACTTTGAACTAACTTA 58.485 34.615 0.00 0.00 0.00 2.24
2000 5507 7.661847 AGATGACCCAACTTTGAACTAACTTAG 59.338 37.037 0.00 0.00 0.00 2.18
2001 5508 6.655930 TGACCCAACTTTGAACTAACTTAGT 58.344 36.000 0.00 0.00 41.73 2.24
2002 5509 7.794041 TGACCCAACTTTGAACTAACTTAGTA 58.206 34.615 1.74 0.00 38.26 1.82
2003 5510 7.712205 TGACCCAACTTTGAACTAACTTAGTAC 59.288 37.037 1.74 0.00 38.26 2.73
2004 5511 7.567458 ACCCAACTTTGAACTAACTTAGTACA 58.433 34.615 1.74 0.00 38.26 2.90
2005 5512 8.048514 ACCCAACTTTGAACTAACTTAGTACAA 58.951 33.333 1.74 0.00 38.26 2.41
2006 5513 8.895737 CCCAACTTTGAACTAACTTAGTACAAA 58.104 33.333 1.74 0.00 38.26 2.83
2007 5514 9.931210 CCAACTTTGAACTAACTTAGTACAAAG 57.069 33.333 0.00 0.00 44.23 2.77
2011 5518 9.931210 CTTTGAACTAACTTAGTACAAAGTTGG 57.069 33.333 11.25 10.71 46.49 3.77
2012 5519 8.441312 TTGAACTAACTTAGTACAAAGTTGGG 57.559 34.615 14.60 9.07 46.44 4.12
2013 5520 7.567458 TGAACTAACTTAGTACAAAGTTGGGT 58.433 34.615 14.60 9.66 46.66 4.51
2015 5522 7.128234 ACTAACTTAGTACAAAGTTGGGTCA 57.872 36.000 14.60 0.00 46.44 4.02
2016 5523 7.742767 ACTAACTTAGTACAAAGTTGGGTCAT 58.257 34.615 14.60 0.00 46.44 3.06
2017 5524 7.876582 ACTAACTTAGTACAAAGTTGGGTCATC 59.123 37.037 14.60 0.00 46.44 2.92
2018 5525 6.435292 ACTTAGTACAAAGTTGGGTCATCT 57.565 37.500 0.00 0.00 36.26 2.90
2019 5526 7.549147 ACTTAGTACAAAGTTGGGTCATCTA 57.451 36.000 0.00 0.00 36.26 1.98
2020 5527 8.147244 ACTTAGTACAAAGTTGGGTCATCTAT 57.853 34.615 0.00 0.00 36.26 1.98
2021 5528 8.603304 ACTTAGTACAAAGTTGGGTCATCTATT 58.397 33.333 0.00 0.00 36.26 1.73
2022 5529 9.449719 CTTAGTACAAAGTTGGGTCATCTATTT 57.550 33.333 0.00 0.00 0.00 1.40
2023 5530 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
2025 5532 9.449719 AGTACAAAGTTGGGTCATCTATTTTAG 57.550 33.333 0.00 0.00 0.00 1.85
2026 5533 9.444600 GTACAAAGTTGGGTCATCTATTTTAGA 57.555 33.333 0.00 0.00 39.50 2.10
2027 5534 8.934023 ACAAAGTTGGGTCATCTATTTTAGAA 57.066 30.769 0.00 0.00 38.50 2.10
2028 5535 8.793592 ACAAAGTTGGGTCATCTATTTTAGAAC 58.206 33.333 0.00 0.00 38.50 3.01
2029 5536 7.611213 AAGTTGGGTCATCTATTTTAGAACG 57.389 36.000 0.00 0.00 38.50 3.95
2030 5537 6.113411 AGTTGGGTCATCTATTTTAGAACGG 58.887 40.000 0.00 0.00 38.50 4.44
2031 5538 5.943349 TGGGTCATCTATTTTAGAACGGA 57.057 39.130 0.00 0.00 38.50 4.69
2032 5539 5.914033 TGGGTCATCTATTTTAGAACGGAG 58.086 41.667 0.00 0.00 38.50 4.63
2033 5540 5.163343 TGGGTCATCTATTTTAGAACGGAGG 60.163 44.000 0.00 0.00 38.50 4.30
2034 5541 5.298347 GGTCATCTATTTTAGAACGGAGGG 58.702 45.833 0.00 0.00 38.50 4.30
2035 5542 5.070047 GGTCATCTATTTTAGAACGGAGGGA 59.930 44.000 0.00 0.00 38.50 4.20
2036 5543 6.217294 GTCATCTATTTTAGAACGGAGGGAG 58.783 44.000 0.00 0.00 38.50 4.30
2078 5586 1.136961 TTCATGGCACCACCTACCCA 61.137 55.000 0.00 0.00 40.22 4.51
2169 5677 4.023536 TGGTAAAATGTGAAAAGCTCCGAC 60.024 41.667 0.00 0.00 0.00 4.79
2221 5733 1.117150 TGTATAGGGCTCCAACCGAC 58.883 55.000 0.00 0.00 0.00 4.79
2238 5750 2.403132 GACAGGCCAGGTGCTCACTT 62.403 60.000 5.01 0.00 40.92 3.16
2240 5752 0.254178 CAGGCCAGGTGCTCACTTAT 59.746 55.000 5.01 0.00 40.92 1.73
2246 5758 3.445096 GCCAGGTGCTCACTTATTCAATT 59.555 43.478 0.00 0.00 36.87 2.32
2252 5767 5.182001 GGTGCTCACTTATTCAATTGTGACT 59.818 40.000 5.13 0.00 35.83 3.41
2279 5794 5.534654 AGCTAAATTTGTGGTTGCTGAACTA 59.465 36.000 0.00 0.00 32.15 2.24
2352 5868 2.564947 AGAGAGAGGCAAACGTTGATCT 59.435 45.455 0.00 2.92 32.90 2.75
2358 5874 1.401539 GGCAAACGTTGATCTGGAAGC 60.402 52.381 0.00 0.00 0.00 3.86
2377 5893 8.387190 TGGAAGCTTGATTATCATAACTCATG 57.613 34.615 2.10 0.00 35.81 3.07
2410 5926 0.171231 CGTGGTCAATCGCTCAGAGA 59.829 55.000 0.00 0.00 0.00 3.10
2443 5959 5.227238 ACTATAGTAGACGGTGTTTGACG 57.773 43.478 2.75 0.00 0.00 4.35
2452 5968 1.544686 GGTGTTTGACGTTGCACAAG 58.455 50.000 12.33 0.00 33.88 3.16
2524 6041 3.531538 TGCGATGTAAGAATGGAGAACC 58.468 45.455 0.00 0.00 0.00 3.62
2569 6115 7.580007 AAGGAGAACTTTTAAGGTTTGTCCTA 58.420 34.615 18.32 0.00 40.42 2.94
2570 6116 7.501559 AAGGAGAACTTTTAAGGTTTGTCCTAC 59.498 37.037 18.32 3.85 40.42 3.18
2603 6149 2.158564 AGGGCATGTACAATGCATAGCT 60.159 45.455 22.92 0.00 46.21 3.32
2604 6150 2.227388 GGGCATGTACAATGCATAGCTC 59.773 50.000 22.92 10.67 46.21 4.09
2642 6188 4.375272 CATGCCATGTAGGATCGGATATC 58.625 47.826 0.00 0.00 41.22 1.63
2644 6190 3.448660 TGCCATGTAGGATCGGATATCAG 59.551 47.826 4.83 0.00 41.22 2.90
2645 6191 3.181471 GCCATGTAGGATCGGATATCAGG 60.181 52.174 4.83 0.00 41.22 3.86
2655 6201 5.394333 GGATCGGATATCAGGTAAAGTAGGC 60.394 48.000 4.83 0.00 0.00 3.93
2670 6216 0.187606 TAGGCTCGGATAGGGAAGCA 59.812 55.000 0.00 0.00 0.00 3.91
2671 6217 0.472734 AGGCTCGGATAGGGAAGCAT 60.473 55.000 0.00 0.00 0.00 3.79
2684 6230 2.437281 GGGAAGCATGATCCTCTTCAGA 59.563 50.000 15.23 0.00 38.29 3.27
2687 6233 4.141756 GGAAGCATGATCCTCTTCAGAAGA 60.142 45.833 12.50 12.50 38.29 2.87
2698 6244 0.250295 TTCAGAAGACGGGTGCTTGG 60.250 55.000 0.00 0.00 0.00 3.61
2700 6246 0.250295 CAGAAGACGGGTGCTTGGAA 60.250 55.000 0.00 0.00 0.00 3.53
2729 6275 6.877611 AAAATGTAGTCCGATGTCAAAAGT 57.122 33.333 0.00 0.00 0.00 2.66
2731 6277 6.481954 AATGTAGTCCGATGTCAAAAGTTC 57.518 37.500 0.00 0.00 0.00 3.01
2736 6282 6.391227 AGTCCGATGTCAAAAGTTCAAAAT 57.609 33.333 0.00 0.00 0.00 1.82
2753 6826 8.527810 AGTTCAAAATGTTGGAGTGAAAAGTAA 58.472 29.630 0.00 0.00 35.29 2.24
2758 6831 9.750125 AAAATGTTGGAGTGAAAAGTAAAGATC 57.250 29.630 0.00 0.00 0.00 2.75
2769 6842 8.230486 GTGAAAAGTAAAGATCCATGTGTACTG 58.770 37.037 0.00 0.00 0.00 2.74
2822 6896 6.364701 ACCCACTAATAATAGCTTGCATTGA 58.635 36.000 0.00 0.00 31.96 2.57
2824 6898 6.712095 CCCACTAATAATAGCTTGCATTGAGA 59.288 38.462 0.00 0.00 31.96 3.27
2825 6899 7.229306 CCCACTAATAATAGCTTGCATTGAGAA 59.771 37.037 0.00 0.00 31.96 2.87
2868 6942 9.739276 ATGTCTCAAACTACTTTTTATCATGGA 57.261 29.630 0.00 0.00 0.00 3.41
2873 6947 8.461222 TCAAACTACTTTTTATCATGGAGCATG 58.539 33.333 0.00 0.00 42.60 4.06
2875 6949 9.461312 AAACTACTTTTTATCATGGAGCATGTA 57.539 29.630 0.00 0.00 41.98 2.29
2889 6963 5.133153 TGGAGCATGTATATCCATATGCCAT 59.867 40.000 0.00 0.00 45.22 4.40
2945 7019 2.288948 GCACACCAAATGAATGAGCCAA 60.289 45.455 0.00 0.00 0.00 4.52
2955 7029 2.027385 GAATGAGCCAAATGGGGAGTC 58.973 52.381 0.90 0.00 37.04 3.36
2969 7043 2.552373 GGGGAGTCGGTTGATTTGAGTT 60.552 50.000 0.00 0.00 0.00 3.01
3010 7086 5.123186 CCCTCCCAGAAAACAAAAACAAAAC 59.877 40.000 0.00 0.00 0.00 2.43
3044 7148 2.094078 GCGTACCCTACACACACCATTA 60.094 50.000 0.00 0.00 0.00 1.90
3123 7227 4.156477 CCAGAGAGAGGGGTAAAGATAGG 58.844 52.174 0.00 0.00 0.00 2.57
3124 7228 4.156477 CAGAGAGAGGGGTAAAGATAGGG 58.844 52.174 0.00 0.00 0.00 3.53
3125 7229 4.063125 AGAGAGAGGGGTAAAGATAGGGA 58.937 47.826 0.00 0.00 0.00 4.20
3126 7230 4.486529 AGAGAGAGGGGTAAAGATAGGGAA 59.513 45.833 0.00 0.00 0.00 3.97
3185 7289 0.322187 GCAATTCACCACTACGGGGT 60.322 55.000 0.00 0.00 40.26 4.95
3192 7296 1.227147 CCACTACGGGGTATGTGCG 60.227 63.158 0.00 0.00 0.00 5.34
3217 7321 7.486870 CGTGTTCATACTTATTACTGTACTGCA 59.513 37.037 0.00 0.00 0.00 4.41
3243 7347 4.771114 AGGGCATGTGCAGTTTAGTATA 57.229 40.909 7.36 0.00 44.36 1.47
3279 7383 0.744771 GATCTTTGGTGGCGACCCTC 60.745 60.000 16.02 1.07 42.34 4.30
3303 7407 1.493022 TGGCAACTGGTAGGTTTGTCT 59.507 47.619 0.00 0.00 37.61 3.41
3309 7413 0.682852 TGGTAGGTTTGTCTGTCCGG 59.317 55.000 0.00 0.00 0.00 5.14
3318 7422 1.212229 GTCTGTCCGGTCGTCCTTC 59.788 63.158 0.00 0.00 0.00 3.46
3327 7431 0.801067 GGTCGTCCTTCGTCCAATCG 60.801 60.000 0.00 0.00 44.61 3.34
3336 7440 5.008019 GTCCTTCGTCCAATCGTATGTAGTA 59.992 44.000 0.00 0.00 0.00 1.82
3337 7441 5.237996 TCCTTCGTCCAATCGTATGTAGTAG 59.762 44.000 0.00 0.00 0.00 2.57
3338 7442 5.428496 TTCGTCCAATCGTATGTAGTAGG 57.572 43.478 0.00 0.00 0.00 3.18
3384 7501 4.451629 TTCTATCCACCTCTGAAACGTC 57.548 45.455 0.00 0.00 0.00 4.34
3421 7538 1.097232 ATCCACGAATGGCATGTGTG 58.903 50.000 19.82 19.82 46.80 3.82
3426 7543 2.423185 CACGAATGGCATGTGTGGTTAT 59.577 45.455 19.28 0.00 0.00 1.89
3427 7544 3.088532 ACGAATGGCATGTGTGGTTATT 58.911 40.909 0.00 0.00 0.00 1.40
3428 7545 4.095632 CACGAATGGCATGTGTGGTTATTA 59.904 41.667 19.28 0.00 0.00 0.98
3655 7772 2.436109 TTGGAGGAGCTGGCCAAC 59.564 61.111 7.01 0.92 36.80 3.77
3723 7840 4.039366 CGAAAGGTCCCCACCAAAATTTAA 59.961 41.667 0.00 0.00 46.68 1.52
3724 7841 5.453480 CGAAAGGTCCCCACCAAAATTTAAA 60.453 40.000 0.00 0.00 46.68 1.52
3725 7842 6.523035 AAAGGTCCCCACCAAAATTTAAAT 57.477 33.333 0.00 0.00 46.68 1.40
3726 7843 6.523035 AAGGTCCCCACCAAAATTTAAATT 57.477 33.333 7.64 7.64 46.68 1.82
3727 7844 6.523035 AGGTCCCCACCAAAATTTAAATTT 57.477 33.333 18.40 18.40 46.68 1.82
3728 7845 7.634526 AGGTCCCCACCAAAATTTAAATTTA 57.365 32.000 23.01 5.68 46.68 1.40
3776 7893 7.545965 ACGGAGGAAATCATCGTCAATTATATC 59.454 37.037 0.00 0.00 43.26 1.63
3989 8111 1.002773 TGCTGAGCTGAATTGCTGAGA 59.997 47.619 5.83 0.00 45.00 3.27
3990 8112 1.666700 GCTGAGCTGAATTGCTGAGAG 59.333 52.381 8.18 0.00 45.00 3.20
3991 8113 2.677325 GCTGAGCTGAATTGCTGAGAGA 60.677 50.000 8.18 0.00 45.00 3.10
3992 8114 3.191669 CTGAGCTGAATTGCTGAGAGAG 58.808 50.000 0.00 0.00 45.00 3.20
3993 8115 2.830321 TGAGCTGAATTGCTGAGAGAGA 59.170 45.455 0.00 0.00 44.17 3.10
4187 8309 2.975799 GGCGGCGACAAGACCAAA 60.976 61.111 12.98 0.00 0.00 3.28
4361 8483 2.765807 AGCATCCTCAGGGACCCG 60.766 66.667 4.40 0.00 45.43 5.28
4559 8681 3.884900 GTGATGTACCACGCCACC 58.115 61.111 0.00 0.00 0.00 4.61
4562 8684 1.153429 GATGTACCACGCCACCTCC 60.153 63.158 0.00 0.00 0.00 4.30
4774 8907 6.920758 TCGTTTCTTTTCTCTTCTCTTCTCTG 59.079 38.462 0.00 0.00 0.00 3.35
4809 8942 9.793252 AATCAATCCAAGAAGAAAATATGTTCG 57.207 29.630 0.00 0.00 36.46 3.95
4902 9062 2.186384 CTCCTCTGCGGCCTCTTG 59.814 66.667 0.00 0.00 0.00 3.02
4925 9085 2.475685 CGCAACTCTACGACGATCTCAA 60.476 50.000 0.00 0.00 0.00 3.02
5046 9206 6.225318 CAACCTTCATTGTCAATTCCAACAT 58.775 36.000 0.00 0.00 0.00 2.71
5264 9428 6.058833 TCAAGTATGTGCTCAAGTAAAACCA 58.941 36.000 0.00 0.00 0.00 3.67
5420 9584 4.063998 TGGAGAAGGACATCATTGATCG 57.936 45.455 0.00 0.00 0.00 3.69
5431 9595 6.912591 GGACATCATTGATCGGTGATAAAAAC 59.087 38.462 11.07 3.92 33.52 2.43
5517 9702 8.765488 TTGAAATGAGCTGGGATGATAAAATA 57.235 30.769 0.00 0.00 0.00 1.40
5557 9742 3.988379 TGAAGCACAGGAATTTCACAC 57.012 42.857 0.00 0.00 0.00 3.82
5562 9747 5.083533 AGCACAGGAATTTCACACAAAAA 57.916 34.783 0.00 0.00 0.00 1.94
5604 9789 1.562008 TCCCACACAGAAACAGTTCCA 59.438 47.619 0.00 0.00 33.92 3.53
5655 9840 7.729124 ACTATAAGTAGGAAGTAGTGCCAAA 57.271 36.000 0.00 0.00 31.96 3.28
5703 9888 1.207329 AGATCAGGTTTAGCCCGACAC 59.793 52.381 0.00 0.00 38.26 3.67
5778 10055 2.649190 TGCCTGCTAAACAAAGACACA 58.351 42.857 0.00 0.00 0.00 3.72
5954 10248 6.714810 TCCTATGCTTGCTTCTAAAAACAGAA 59.285 34.615 0.00 0.00 33.55 3.02
6160 10454 2.949177 TTCCACCTGCAATGTAGTGT 57.051 45.000 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
158 159 8.314021 GTTTCCTACCTGAATTCAATGGATTTT 58.686 33.333 18.09 1.39 0.00 1.82
159 160 7.093333 GGTTTCCTACCTGAATTCAATGGATTT 60.093 37.037 18.09 1.70 44.10 2.17
160 161 6.381133 GGTTTCCTACCTGAATTCAATGGATT 59.619 38.462 18.09 2.31 44.10 3.01
161 162 5.893824 GGTTTCCTACCTGAATTCAATGGAT 59.106 40.000 18.09 7.19 44.10 3.41
164 166 7.631377 GGAATGGTTTCCTACCTGAATTCAATG 60.631 40.741 9.88 6.36 46.80 2.82
183 185 3.116900 ACCCTTTGGTTTGTAGGAATGGT 60.117 43.478 0.00 0.00 44.75 3.55
221 223 6.151648 CAGGAATCTTGTAGGAATTTTGCTGA 59.848 38.462 0.00 0.00 34.29 4.26
236 238 4.220602 CCCCTTTGGTTTACAGGAATCTTG 59.779 45.833 0.00 0.00 0.00 3.02
333 335 1.077123 CTATCGAGCCTGCATCATGC 58.923 55.000 1.35 1.35 45.29 4.06
334 336 1.675116 CCCTATCGAGCCTGCATCATG 60.675 57.143 0.00 0.00 0.00 3.07
335 337 0.612229 CCCTATCGAGCCTGCATCAT 59.388 55.000 0.00 0.00 0.00 2.45
337 339 1.375268 GCCCTATCGAGCCTGCATC 60.375 63.158 0.00 0.00 0.00 3.91
338 340 2.746359 GCCCTATCGAGCCTGCAT 59.254 61.111 0.00 0.00 0.00 3.96
339 341 3.916544 CGCCCTATCGAGCCTGCA 61.917 66.667 0.00 0.00 0.00 4.41
340 342 2.561956 TACGCCCTATCGAGCCTGC 61.562 63.158 0.00 0.00 0.00 4.85
341 343 1.173444 AGTACGCCCTATCGAGCCTG 61.173 60.000 0.00 0.00 0.00 4.85
342 344 0.890090 GAGTACGCCCTATCGAGCCT 60.890 60.000 0.00 0.00 0.00 4.58
344 346 1.580437 GGAGTACGCCCTATCGAGC 59.420 63.158 3.92 0.00 0.00 5.03
345 347 2.255430 GGGAGTACGCCCTATCGAG 58.745 63.158 26.11 0.00 45.12 4.04
346 348 4.488790 GGGAGTACGCCCTATCGA 57.511 61.111 26.11 0.00 45.12 3.59
354 356 1.880819 TTTGGACGGAGGGAGTACGC 61.881 60.000 0.00 0.00 0.00 4.42
355 357 0.604578 TTTTGGACGGAGGGAGTACG 59.395 55.000 0.00 0.00 0.00 3.67
356 358 2.845363 TTTTTGGACGGAGGGAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
357 359 4.098894 AGTATTTTTGGACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
358 360 2.910977 AGTATTTTTGGACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
360 362 3.073356 ACAAGTATTTTTGGACGGAGGGA 59.927 43.478 0.00 0.00 32.32 4.20
361 363 3.418047 ACAAGTATTTTTGGACGGAGGG 58.582 45.455 0.00 0.00 32.32 4.30
362 364 4.069304 TGACAAGTATTTTTGGACGGAGG 58.931 43.478 0.00 0.00 32.32 4.30
363 365 5.880054 ATGACAAGTATTTTTGGACGGAG 57.120 39.130 0.00 0.00 32.32 4.63
364 366 6.703319 TCTATGACAAGTATTTTTGGACGGA 58.297 36.000 0.00 0.00 32.32 4.69
365 367 6.978343 TCTATGACAAGTATTTTTGGACGG 57.022 37.500 0.00 0.00 32.32 4.79
366 368 9.277565 CATTTCTATGACAAGTATTTTTGGACG 57.722 33.333 0.00 0.00 33.37 4.79
420 422 8.307483 CGAGGAATGAATGTACCTAGATGTATT 58.693 37.037 0.00 0.00 32.53 1.89
422 424 6.208797 CCGAGGAATGAATGTACCTAGATGTA 59.791 42.308 0.00 0.00 32.53 2.29
423 425 5.011125 CCGAGGAATGAATGTACCTAGATGT 59.989 44.000 0.00 0.00 32.53 3.06
425 427 5.244178 GTCCGAGGAATGAATGTACCTAGAT 59.756 44.000 0.00 0.00 32.53 1.98
426 428 4.583489 GTCCGAGGAATGAATGTACCTAGA 59.417 45.833 0.00 0.00 32.53 2.43
427 429 4.341235 TGTCCGAGGAATGAATGTACCTAG 59.659 45.833 0.00 0.00 32.53 3.02
428 430 4.283337 TGTCCGAGGAATGAATGTACCTA 58.717 43.478 0.00 0.00 32.53 3.08
431 433 4.504858 ACTTGTCCGAGGAATGAATGTAC 58.495 43.478 0.00 0.00 0.00 2.90
432 434 4.819105 ACTTGTCCGAGGAATGAATGTA 57.181 40.909 0.00 0.00 0.00 2.29
434 436 6.316140 TGAAATACTTGTCCGAGGAATGAATG 59.684 38.462 0.00 0.00 0.00 2.67
435 437 6.414732 TGAAATACTTGTCCGAGGAATGAAT 58.585 36.000 0.00 0.00 0.00 2.57
437 439 5.414789 TGAAATACTTGTCCGAGGAATGA 57.585 39.130 0.00 0.00 0.00 2.57
438 440 4.572389 CCTGAAATACTTGTCCGAGGAATG 59.428 45.833 0.00 0.00 0.00 2.67
439 441 4.469945 TCCTGAAATACTTGTCCGAGGAAT 59.530 41.667 0.00 0.00 0.00 3.01
440 442 3.835978 TCCTGAAATACTTGTCCGAGGAA 59.164 43.478 0.00 0.00 0.00 3.36
441 443 3.437213 TCCTGAAATACTTGTCCGAGGA 58.563 45.455 0.00 0.00 0.00 3.71
442 444 3.887621 TCCTGAAATACTTGTCCGAGG 57.112 47.619 0.00 0.00 0.00 4.63
443 445 4.122776 CCATCCTGAAATACTTGTCCGAG 58.877 47.826 0.00 0.00 0.00 4.63
445 447 4.122776 CTCCATCCTGAAATACTTGTCCG 58.877 47.826 0.00 0.00 0.00 4.79
446 448 4.164221 TCCTCCATCCTGAAATACTTGTCC 59.836 45.833 0.00 0.00 0.00 4.02
447 449 5.359194 TCCTCCATCCTGAAATACTTGTC 57.641 43.478 0.00 0.00 0.00 3.18
448 450 5.251700 ACTTCCTCCATCCTGAAATACTTGT 59.748 40.000 0.00 0.00 0.00 3.16
449 451 5.749462 ACTTCCTCCATCCTGAAATACTTG 58.251 41.667 0.00 0.00 0.00 3.16
452 454 6.487299 AGTACTTCCTCCATCCTGAAATAC 57.513 41.667 0.00 0.00 0.00 1.89
454 456 5.488919 TCAAGTACTTCCTCCATCCTGAAAT 59.511 40.000 4.77 0.00 0.00 2.17
456 458 4.425772 TCAAGTACTTCCTCCATCCTGAA 58.574 43.478 4.77 0.00 0.00 3.02
457 459 4.061131 TCAAGTACTTCCTCCATCCTGA 57.939 45.455 4.77 0.00 0.00 3.86
458 460 5.365021 AATCAAGTACTTCCTCCATCCTG 57.635 43.478 4.77 0.00 0.00 3.86
460 462 9.847224 TTAATTAATCAAGTACTTCCTCCATCC 57.153 33.333 4.77 0.00 0.00 3.51
463 465 9.158233 CGTTTAATTAATCAAGTACTTCCTCCA 57.842 33.333 4.77 0.00 0.00 3.86
464 466 9.374838 TCGTTTAATTAATCAAGTACTTCCTCC 57.625 33.333 4.77 0.00 0.00 4.30
515 517 2.758736 CTCAACAAGCAGCTAGGAGT 57.241 50.000 0.00 0.00 0.00 3.85
555 557 5.779806 AGCACAACAAACTATTACTAGCG 57.220 39.130 0.00 0.00 0.00 4.26
583 585 3.425162 ACCGCTCTTTCAAGAATCCTT 57.575 42.857 0.00 0.00 34.03 3.36
601 603 5.582689 ACTACCGGTATGTTGTTACTACC 57.417 43.478 16.25 0.00 33.10 3.18
609 611 4.275689 TCCGTATGTACTACCGGTATGTTG 59.724 45.833 16.25 5.86 32.56 3.33
615 617 2.301346 CCTTCCGTATGTACTACCGGT 58.699 52.381 13.98 13.98 0.00 5.28
680 1550 1.585521 GCCGGAGTACGTGACGATG 60.586 63.158 13.70 0.00 42.24 3.84
681 1551 2.796651 GCCGGAGTACGTGACGAT 59.203 61.111 13.70 0.00 42.24 3.73
682 1552 3.792047 CGCCGGAGTACGTGACGA 61.792 66.667 13.70 0.00 42.24 4.20
683 1553 4.824166 CCGCCGGAGTACGTGACG 62.824 72.222 5.05 2.24 42.24 4.35
802 3777 4.873827 ACTACACGTATTTATGCAGTTGGG 59.126 41.667 0.00 0.00 0.00 4.12
869 3844 4.877251 ACTAGAAGAAGGCTACGAGTAGTG 59.123 45.833 11.39 0.00 35.65 2.74
952 4180 0.405973 GTTTCCTCCTCTTGGCCCTT 59.594 55.000 0.00 0.00 0.00 3.95
1493 4736 5.395324 CCATGACCTATCCGTTCAAGTAACT 60.395 44.000 0.00 0.00 35.81 2.24
1509 4752 1.841556 ACACGGACACCCATGACCT 60.842 57.895 0.00 0.00 38.39 3.85
1510 4753 1.671054 CACACGGACACCCATGACC 60.671 63.158 0.00 0.00 37.31 4.02
1511 4754 2.325082 GCACACGGACACCCATGAC 61.325 63.158 0.00 0.00 0.00 3.06
1521 4766 1.381522 CATGGATGAATGCACACGGA 58.618 50.000 0.00 0.00 0.00 4.69
1532 4784 1.317431 GCTGGCTTGTGCATGGATGA 61.317 55.000 0.00 0.00 41.91 2.92
1562 4819 5.843019 AATCCACTCAGAAAAAGAGGGTA 57.157 39.130 0.00 0.00 34.70 3.69
1577 5084 3.959293 TGTCATGCATGAGAAATCCACT 58.041 40.909 29.38 0.00 37.51 4.00
1596 5103 8.518430 TGTGCTATAATAAATCAACCACATGT 57.482 30.769 0.00 0.00 0.00 3.21
1634 5141 1.006832 CTAGTTGCATACGCCACACC 58.993 55.000 0.00 0.00 36.26 4.16
1714 5221 1.898472 TGCTGAGGAGTGAAAGAGAGG 59.102 52.381 0.00 0.00 0.00 3.69
1738 5245 4.672587 ACATGGAGCTACACGATACAAT 57.327 40.909 0.00 0.00 0.00 2.71
1758 5265 6.301687 TGCTTCTATCGTCATAGTGACTAC 57.698 41.667 8.30 0.00 44.85 2.73
1775 5282 5.105023 TGCATATGTCTCTTCTCTTGCTTCT 60.105 40.000 4.29 0.00 0.00 2.85
1900 5407 1.143481 TGAATGGGTCGATGCATCCAT 59.857 47.619 20.87 15.55 41.31 3.41
1941 5448 3.166679 GAGGGAGTAGATGGGTATGGAC 58.833 54.545 0.00 0.00 0.00 4.02
1942 5449 2.111972 GGAGGGAGTAGATGGGTATGGA 59.888 54.545 0.00 0.00 0.00 3.41
1943 5450 2.541466 GGAGGGAGTAGATGGGTATGG 58.459 57.143 0.00 0.00 0.00 2.74
1954 5461 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
1955 5462 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
1956 5463 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
1957 5464 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
1958 5465 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
1959 5466 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
1960 5467 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
1961 5468 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
1962 5469 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
1963 5470 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
1964 5471 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
1965 5472 6.780031 TCAAAGTTGGGTCATCTATTTTGGAA 59.220 34.615 0.00 0.00 0.00 3.53
1966 5473 6.310941 TCAAAGTTGGGTCATCTATTTTGGA 58.689 36.000 0.00 0.00 0.00 3.53
1967 5474 6.588719 TCAAAGTTGGGTCATCTATTTTGG 57.411 37.500 0.00 0.00 0.00 3.28
1968 5475 7.661040 AGTTCAAAGTTGGGTCATCTATTTTG 58.339 34.615 0.00 0.00 0.00 2.44
1969 5476 7.839680 AGTTCAAAGTTGGGTCATCTATTTT 57.160 32.000 0.00 0.00 0.00 1.82
1970 5477 8.793592 GTTAGTTCAAAGTTGGGTCATCTATTT 58.206 33.333 0.00 0.00 0.00 1.40
1971 5478 8.164070 AGTTAGTTCAAAGTTGGGTCATCTATT 58.836 33.333 0.00 0.00 0.00 1.73
1972 5479 7.690256 AGTTAGTTCAAAGTTGGGTCATCTAT 58.310 34.615 0.00 0.00 0.00 1.98
1973 5480 7.074653 AGTTAGTTCAAAGTTGGGTCATCTA 57.925 36.000 0.00 0.00 0.00 1.98
1974 5481 5.941788 AGTTAGTTCAAAGTTGGGTCATCT 58.058 37.500 0.00 0.00 0.00 2.90
1975 5482 6.635030 AAGTTAGTTCAAAGTTGGGTCATC 57.365 37.500 0.00 0.00 0.00 2.92
1976 5483 7.287810 ACTAAGTTAGTTCAAAGTTGGGTCAT 58.712 34.615 9.85 0.00 34.86 3.06
1977 5484 6.655930 ACTAAGTTAGTTCAAAGTTGGGTCA 58.344 36.000 9.85 0.00 34.86 4.02
1978 5485 7.712205 TGTACTAAGTTAGTTCAAAGTTGGGTC 59.288 37.037 20.28 0.00 40.14 4.46
1979 5486 7.567458 TGTACTAAGTTAGTTCAAAGTTGGGT 58.433 34.615 20.28 0.00 40.14 4.51
1980 5487 8.441312 TTGTACTAAGTTAGTTCAAAGTTGGG 57.559 34.615 24.53 0.00 41.19 4.12
1986 5493 8.895737 CCCAACTTTGTACTAAGTTAGTTCAAA 58.104 33.333 30.12 30.12 46.61 2.69
1987 5494 8.048514 ACCCAACTTTGTACTAAGTTAGTTCAA 58.951 33.333 27.33 23.52 44.33 2.69
1988 5495 7.567458 ACCCAACTTTGTACTAAGTTAGTTCA 58.433 34.615 27.33 17.92 44.33 3.18
1989 5496 7.712205 TGACCCAACTTTGTACTAAGTTAGTTC 59.288 37.037 27.33 20.68 44.33 3.01
1990 5497 7.567458 TGACCCAACTTTGTACTAAGTTAGTT 58.433 34.615 27.33 14.47 44.33 2.24
1991 5498 7.128234 TGACCCAACTTTGTACTAAGTTAGT 57.872 36.000 27.33 25.69 44.33 2.24
1992 5499 8.095169 AGATGACCCAACTTTGTACTAAGTTAG 58.905 37.037 27.33 23.50 44.33 2.34
1993 5500 7.970102 AGATGACCCAACTTTGTACTAAGTTA 58.030 34.615 27.33 16.34 44.33 2.24
1994 5501 6.838382 AGATGACCCAACTTTGTACTAAGTT 58.162 36.000 23.96 23.96 46.42 2.66
1995 5502 6.435292 AGATGACCCAACTTTGTACTAAGT 57.565 37.500 15.68 15.68 39.97 2.24
1996 5503 9.449719 AAATAGATGACCCAACTTTGTACTAAG 57.550 33.333 14.42 14.42 0.00 2.18
1997 5504 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
1999 5506 9.449719 CTAAAATAGATGACCCAACTTTGTACT 57.550 33.333 0.00 0.00 0.00 2.73
2000 5507 9.444600 TCTAAAATAGATGACCCAACTTTGTAC 57.555 33.333 0.00 0.00 0.00 2.90
2002 5509 8.793592 GTTCTAAAATAGATGACCCAACTTTGT 58.206 33.333 0.00 0.00 34.22 2.83
2003 5510 7.962918 CGTTCTAAAATAGATGACCCAACTTTG 59.037 37.037 0.00 0.00 34.22 2.77
2004 5511 7.120726 CCGTTCTAAAATAGATGACCCAACTTT 59.879 37.037 0.00 0.00 34.22 2.66
2005 5512 6.598064 CCGTTCTAAAATAGATGACCCAACTT 59.402 38.462 0.00 0.00 34.22 2.66
2006 5513 6.070424 TCCGTTCTAAAATAGATGACCCAACT 60.070 38.462 0.00 0.00 34.22 3.16
2007 5514 6.110707 TCCGTTCTAAAATAGATGACCCAAC 58.889 40.000 0.00 0.00 34.22 3.77
2008 5515 6.302535 TCCGTTCTAAAATAGATGACCCAA 57.697 37.500 0.00 0.00 34.22 4.12
2009 5516 5.163343 CCTCCGTTCTAAAATAGATGACCCA 60.163 44.000 0.00 0.00 34.22 4.51
2010 5517 5.298347 CCTCCGTTCTAAAATAGATGACCC 58.702 45.833 0.00 0.00 34.22 4.46
2011 5518 5.070047 TCCCTCCGTTCTAAAATAGATGACC 59.930 44.000 0.00 0.00 34.22 4.02
2012 5519 6.158023 TCCCTCCGTTCTAAAATAGATGAC 57.842 41.667 0.00 0.00 34.22 3.06
2013 5520 5.897824 ACTCCCTCCGTTCTAAAATAGATGA 59.102 40.000 0.00 0.00 34.22 2.92
2014 5521 6.163135 ACTCCCTCCGTTCTAAAATAGATG 57.837 41.667 0.00 0.00 34.22 2.90
2015 5522 6.015265 GCTACTCCCTCCGTTCTAAAATAGAT 60.015 42.308 0.00 0.00 34.22 1.98
2016 5523 5.301298 GCTACTCCCTCCGTTCTAAAATAGA 59.699 44.000 0.00 0.00 0.00 1.98
2017 5524 5.302313 AGCTACTCCCTCCGTTCTAAAATAG 59.698 44.000 0.00 0.00 0.00 1.73
2018 5525 5.206587 AGCTACTCCCTCCGTTCTAAAATA 58.793 41.667 0.00 0.00 0.00 1.40
2019 5526 4.031611 AGCTACTCCCTCCGTTCTAAAAT 58.968 43.478 0.00 0.00 0.00 1.82
2020 5527 3.438183 AGCTACTCCCTCCGTTCTAAAA 58.562 45.455 0.00 0.00 0.00 1.52
2021 5528 3.097342 AGCTACTCCCTCCGTTCTAAA 57.903 47.619 0.00 0.00 0.00 1.85
2022 5529 2.822707 AGCTACTCCCTCCGTTCTAA 57.177 50.000 0.00 0.00 0.00 2.10
2023 5530 2.486907 GCTAGCTACTCCCTCCGTTCTA 60.487 54.545 7.70 0.00 0.00 2.10
2024 5531 1.751382 GCTAGCTACTCCCTCCGTTCT 60.751 57.143 7.70 0.00 0.00 3.01
2025 5532 0.669619 GCTAGCTACTCCCTCCGTTC 59.330 60.000 7.70 0.00 0.00 3.95
2026 5533 0.033405 TGCTAGCTACTCCCTCCGTT 60.033 55.000 17.23 0.00 0.00 4.44
2027 5534 0.466555 CTGCTAGCTACTCCCTCCGT 60.467 60.000 17.23 0.00 0.00 4.69
2028 5535 0.466555 ACTGCTAGCTACTCCCTCCG 60.467 60.000 17.23 0.00 0.00 4.63
2029 5536 2.158579 AGTACTGCTAGCTACTCCCTCC 60.159 54.545 17.23 0.00 0.00 4.30
2030 5537 3.217681 AGTACTGCTAGCTACTCCCTC 57.782 52.381 17.23 0.00 0.00 4.30
2031 5538 4.792513 TTAGTACTGCTAGCTACTCCCT 57.207 45.455 17.32 8.22 0.00 4.20
2032 5539 5.302313 ACAATTAGTACTGCTAGCTACTCCC 59.698 44.000 17.32 1.64 0.00 4.30
2033 5540 6.394025 ACAATTAGTACTGCTAGCTACTCC 57.606 41.667 17.32 2.60 0.00 3.85
2034 5541 7.708998 AGAACAATTAGTACTGCTAGCTACTC 58.291 38.462 17.32 6.26 0.00 2.59
2035 5542 7.648039 AGAACAATTAGTACTGCTAGCTACT 57.352 36.000 17.23 17.55 0.00 2.57
2036 5543 7.974501 TGAAGAACAATTAGTACTGCTAGCTAC 59.025 37.037 17.23 11.00 0.00 3.58
2078 5586 4.646492 GGAAATATCTGTGCAAGGGACATT 59.354 41.667 0.00 0.00 0.00 2.71
2169 5677 3.242867 TGAACCCTAGGCATGGATCTAG 58.757 50.000 2.05 0.00 34.35 2.43
2221 5733 0.254178 ATAAGTGAGCACCTGGCCTG 59.746 55.000 3.32 2.54 46.50 4.85
2246 5758 6.952773 ACCACAAATTTAGCTTAAGTCACA 57.047 33.333 4.02 0.00 0.00 3.58
2252 5767 6.398234 TCAGCAACCACAAATTTAGCTTAA 57.602 33.333 0.00 0.00 0.00 1.85
2265 5780 3.735746 GCAAAACATAGTTCAGCAACCAC 59.264 43.478 0.00 0.00 32.22 4.16
2352 5868 7.994911 ACATGAGTTATGATAATCAAGCTTCCA 59.005 33.333 0.00 0.00 39.21 3.53
2358 5874 9.761504 ACTGAGACATGAGTTATGATAATCAAG 57.238 33.333 0.00 0.00 39.21 3.02
2377 5893 1.941812 CCACGTTTGGCACTGAGAC 59.058 57.895 0.00 0.00 35.56 3.36
2396 5912 3.006859 TCCTTGTTTCTCTGAGCGATTGA 59.993 43.478 0.00 0.00 0.00 2.57
2410 5926 7.066766 CACCGTCTACTATAGTACTCCTTGTTT 59.933 40.741 8.59 0.00 0.00 2.83
2542 6062 7.553334 GGACAAACCTTAAAAGTTCTCCTTTT 58.447 34.615 5.50 5.50 43.90 2.27
2569 6115 4.862641 ACATGCCCTTACTTATCCTTGT 57.137 40.909 0.00 0.00 0.00 3.16
2570 6116 5.680619 TGTACATGCCCTTACTTATCCTTG 58.319 41.667 0.00 0.00 0.00 3.61
2571 6117 5.968676 TGTACATGCCCTTACTTATCCTT 57.031 39.130 0.00 0.00 0.00 3.36
2573 6119 5.048713 GCATTGTACATGCCCTTACTTATCC 60.049 44.000 15.31 0.00 39.01 2.59
2642 6188 3.256136 CCTATCCGAGCCTACTTTACCTG 59.744 52.174 0.00 0.00 0.00 4.00
2644 6190 2.561858 CCCTATCCGAGCCTACTTTACC 59.438 54.545 0.00 0.00 0.00 2.85
2645 6191 3.494332 TCCCTATCCGAGCCTACTTTAC 58.506 50.000 0.00 0.00 0.00 2.01
2655 6201 2.093764 GGATCATGCTTCCCTATCCGAG 60.094 54.545 0.00 0.00 0.00 4.63
2670 6216 2.697751 CCCGTCTTCTGAAGAGGATCAT 59.302 50.000 31.06 0.00 44.08 2.45
2671 6217 2.103373 CCCGTCTTCTGAAGAGGATCA 58.897 52.381 31.06 6.00 44.08 2.92
2684 6230 0.472471 TCTTTCCAAGCACCCGTCTT 59.528 50.000 0.00 0.00 0.00 3.01
2687 6233 1.770294 TTTTCTTTCCAAGCACCCGT 58.230 45.000 0.00 0.00 0.00 5.28
2708 6254 5.995282 TGAACTTTTGACATCGGACTACATT 59.005 36.000 0.00 0.00 0.00 2.71
2709 6255 5.547465 TGAACTTTTGACATCGGACTACAT 58.453 37.500 0.00 0.00 0.00 2.29
2713 6259 5.828299 TTTTGAACTTTTGACATCGGACT 57.172 34.783 0.00 0.00 0.00 3.85
2719 6265 7.278424 CACTCCAACATTTTGAACTTTTGACAT 59.722 33.333 0.00 0.00 34.24 3.06
2722 6268 6.929625 TCACTCCAACATTTTGAACTTTTGA 58.070 32.000 0.00 0.00 34.24 2.69
2729 6275 9.364989 CTTTACTTTTCACTCCAACATTTTGAA 57.635 29.630 0.00 0.00 34.24 2.69
2731 6277 8.925161 TCTTTACTTTTCACTCCAACATTTTG 57.075 30.769 0.00 0.00 0.00 2.44
2736 6282 6.361433 TGGATCTTTACTTTTCACTCCAACA 58.639 36.000 0.00 0.00 0.00 3.33
2753 6826 4.357325 AGACTCCAGTACACATGGATCTT 58.643 43.478 3.00 0.00 45.64 2.40
2758 6831 7.687941 AAAATAAAGACTCCAGTACACATGG 57.312 36.000 0.00 0.00 39.33 3.66
2798 6872 6.364701 TCAATGCAAGCTATTATTAGTGGGT 58.635 36.000 0.00 0.00 0.00 4.51
2841 6915 9.994432 CCATGATAAAAAGTAGTTTGAGACATC 57.006 33.333 0.00 0.00 0.00 3.06
2842 6916 9.739276 TCCATGATAAAAAGTAGTTTGAGACAT 57.261 29.630 0.00 0.00 0.00 3.06
2845 6919 7.882791 TGCTCCATGATAAAAAGTAGTTTGAGA 59.117 33.333 0.00 0.00 0.00 3.27
2861 6935 6.940867 GCATATGGATATACATGCTCCATGAT 59.059 38.462 21.17 12.38 46.64 2.45
2868 6942 6.256643 TGATGGCATATGGATATACATGCT 57.743 37.500 10.95 0.00 32.39 3.79
2945 7019 2.041081 TCAAATCAACCGACTCCCCATT 59.959 45.455 0.00 0.00 0.00 3.16
2955 7029 3.347216 AGGGATGAACTCAAATCAACCG 58.653 45.455 0.00 0.00 39.81 4.44
2969 7043 0.468226 GGGTATGCGTGAAGGGATGA 59.532 55.000 0.00 0.00 0.00 2.92
3054 7158 6.547141 TGAATTGGTCTGGGCTGAATTATTAG 59.453 38.462 0.00 0.00 0.00 1.73
3055 7159 6.430864 TGAATTGGTCTGGGCTGAATTATTA 58.569 36.000 0.00 0.00 0.00 0.98
3095 7199 1.614824 CCCCTCTCTCTGGGCTGTT 60.615 63.158 0.00 0.00 43.26 3.16
3096 7200 1.519326 TACCCCTCTCTCTGGGCTGT 61.519 60.000 0.00 0.00 46.43 4.40
3123 7227 0.988063 GGCAGGGGATCTATCCTTCC 59.012 60.000 8.85 2.97 46.35 3.46
3124 7228 1.627834 CAGGCAGGGGATCTATCCTTC 59.372 57.143 8.85 2.59 46.35 3.46
3125 7229 1.739750 CAGGCAGGGGATCTATCCTT 58.260 55.000 8.85 0.00 46.35 3.36
3126 7230 0.178879 CCAGGCAGGGGATCTATCCT 60.179 60.000 8.85 0.00 46.35 3.24
3185 7289 7.977293 ACAGTAATAAGTATGAACACGCACATA 59.023 33.333 0.00 0.00 0.00 2.29
3192 7296 8.697846 TGCAGTACAGTAATAAGTATGAACAC 57.302 34.615 0.00 0.00 0.00 3.32
3217 7321 2.749044 CTGCACATGCCCTTCGCT 60.749 61.111 0.49 0.00 41.18 4.93
3243 7347 1.967066 GATCTCGGAGATGATGTGGGT 59.033 52.381 24.43 0.00 34.53 4.51
3279 7383 1.981256 AACCTACCAGTTGCCACAAG 58.019 50.000 0.00 0.00 0.00 3.16
3303 7407 2.595463 ACGAAGGACGACCGGACA 60.595 61.111 9.46 0.00 45.77 4.02
3309 7413 0.109412 ACGATTGGACGAAGGACGAC 60.109 55.000 0.00 0.00 45.77 4.34
3318 7422 4.083431 CCTCCTACTACATACGATTGGACG 60.083 50.000 0.00 0.00 39.31 4.79
3382 7499 1.059979 TGATTAATCGTGCGTTGCGAC 59.940 47.619 10.80 0.00 41.33 5.19
3384 7501 2.289654 GATGATTAATCGTGCGTTGCG 58.710 47.619 14.93 0.00 0.00 4.85
3426 7543 9.635520 GCACTGTCTGTACTATTTCTTTAGTAA 57.364 33.333 0.00 0.00 36.65 2.24
3427 7544 8.799367 TGCACTGTCTGTACTATTTCTTTAGTA 58.201 33.333 0.00 0.00 34.35 1.82
3428 7545 7.667557 TGCACTGTCTGTACTATTTCTTTAGT 58.332 34.615 0.00 0.00 36.43 2.24
3728 7845 9.826574 TCCGTTTATAAAAGTGAAGCTGTATAT 57.173 29.630 9.78 0.00 0.00 0.86
3738 7855 8.801882 ATGATTTCCTCCGTTTATAAAAGTGA 57.198 30.769 9.78 6.36 0.00 3.41
3740 7857 7.551617 ACGATGATTTCCTCCGTTTATAAAAGT 59.448 33.333 9.78 0.00 0.00 2.66
3989 8111 5.184711 GCATCCAACATTTTCTCTCTCTCT 58.815 41.667 0.00 0.00 0.00 3.10
3990 8112 4.335037 GGCATCCAACATTTTCTCTCTCTC 59.665 45.833 0.00 0.00 0.00 3.20
3991 8113 4.268359 GGCATCCAACATTTTCTCTCTCT 58.732 43.478 0.00 0.00 0.00 3.10
3992 8114 3.064545 CGGCATCCAACATTTTCTCTCTC 59.935 47.826 0.00 0.00 0.00 3.20
3993 8115 3.012518 CGGCATCCAACATTTTCTCTCT 58.987 45.455 0.00 0.00 0.00 3.10
4126 8248 2.809601 CCTTCTTCACGTCGCCGG 60.810 66.667 0.00 0.00 38.78 6.13
4170 8292 2.458006 CTTTTGGTCTTGTCGCCGCC 62.458 60.000 0.00 0.00 0.00 6.13
4187 8309 1.379044 CATGCCTTTCCGCTCCCTT 60.379 57.895 0.00 0.00 0.00 3.95
4751 8873 7.926018 AGACAGAGAAGAGAAGAGAAAAGAAAC 59.074 37.037 0.00 0.00 0.00 2.78
4774 8907 5.882557 TCTTCTTGGATTGATTGCCTTAGAC 59.117 40.000 0.00 0.00 0.00 2.59
4908 9068 1.664659 CGGTTGAGATCGTCGTAGAGT 59.335 52.381 0.00 0.00 36.95 3.24
4925 9085 3.389925 TGACGAACTTGTATTTCCGGT 57.610 42.857 0.00 0.00 0.00 5.28
5046 9206 2.167662 TGAGACGTGAAGGACATGCTA 58.832 47.619 0.00 0.00 38.94 3.49
5166 9330 6.267242 TCTTGGGATCAAAATTGAACATGTCA 59.733 34.615 0.00 0.00 41.13 3.58
5517 9702 8.905850 TGCTTCAAACATGACATGAATACATAT 58.094 29.630 22.19 0.00 35.09 1.78
5562 9747 1.469595 CGAACCGATTGCCATGCATTT 60.470 47.619 0.00 0.00 38.76 2.32
5632 9817 8.421784 TGATTTGGCACTACTTCCTACTTATAG 58.578 37.037 0.00 0.00 0.00 1.31
5655 9840 3.511540 TGAGAGGTCGAACTGAACATGAT 59.488 43.478 8.28 0.00 36.45 2.45
5703 9888 2.423185 TCTATTTGCTCATGTTTGGCCG 59.577 45.455 0.00 0.00 0.00 6.13
5778 10055 0.314935 CGTTGCTTTGTGCCCATCTT 59.685 50.000 0.00 0.00 42.00 2.40
6160 10454 5.160699 GCAAGATATTGATTGCTCGTTCA 57.839 39.130 3.77 0.00 46.49 3.18
6215 10509 6.238648 CAGTCCACTGGGTTAAATTCTAACT 58.761 40.000 0.00 0.00 40.20 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.