Multiple sequence alignment - TraesCS7A01G276700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G276700 chr7A 100.000 2726 0 0 1 2726 289162207 289159482 0.000000e+00 5035
1 TraesCS7A01G276700 chr7A 89.831 649 49 7 1885 2518 41404490 41403844 0.000000e+00 817
2 TraesCS7A01G276700 chr7A 89.368 649 53 7 1885 2518 41367219 41366572 0.000000e+00 802
3 TraesCS7A01G276700 chr7A 86.758 657 67 7 1886 2527 5855820 5855169 0.000000e+00 713
4 TraesCS7A01G276700 chr7A 92.405 158 12 0 1 158 215187829 215187672 2.730000e-55 226
5 TraesCS7A01G276700 chr7D 92.189 1101 42 15 807 1869 265005230 265004136 0.000000e+00 1517
6 TraesCS7A01G276700 chr7D 87.558 651 63 6 1884 2519 182612995 182613642 0.000000e+00 737
7 TraesCS7A01G276700 chr7D 84.592 649 64 7 1886 2519 613864019 613863392 1.790000e-171 612
8 TraesCS7A01G276700 chr7D 88.889 252 19 4 537 779 555969068 555968817 4.410000e-78 302
9 TraesCS7A01G276700 chr7D 86.792 265 26 4 524 779 98664625 98664361 1.240000e-73 287
10 TraesCS7A01G276700 chr7D 88.517 209 20 3 2522 2726 99028377 99028169 1.620000e-62 250
11 TraesCS7A01G276700 chr7D 84.444 270 22 10 266 535 265005499 265005250 5.830000e-62 248
12 TraesCS7A01G276700 chr7D 92.547 161 12 0 1 161 554577779 554577619 5.870000e-57 231
13 TraesCS7A01G276700 chr7D 86.207 174 13 5 2547 2709 265004130 265003957 7.760000e-41 178
14 TraesCS7A01G276700 chr7B 91.960 1107 38 14 807 1869 245212258 245211159 0.000000e+00 1504
15 TraesCS7A01G276700 chr7B 88.189 254 19 5 535 777 574415162 574415415 2.650000e-75 292
16 TraesCS7A01G276700 chr7B 88.142 253 21 4 537 780 598296156 598296408 2.650000e-75 292
17 TraesCS7A01G276700 chr7B 91.603 131 11 0 266 396 245213968 245213838 6.000000e-42 182
18 TraesCS7A01G276700 chr7B 93.458 107 7 0 407 513 245212394 245212288 2.810000e-35 159
19 TraesCS7A01G276700 chr2D 91.258 652 38 5 1883 2519 579755009 579754362 0.000000e+00 870
20 TraesCS7A01G276700 chr2D 88.095 252 21 4 537 779 583317276 583317025 9.550000e-75 291
21 TraesCS7A01G276700 chr1D 89.247 651 54 3 1887 2522 282131165 282130516 0.000000e+00 800
22 TraesCS7A01G276700 chr1D 88.443 623 54 4 1925 2531 491722082 491721462 0.000000e+00 736
23 TraesCS7A01G276700 chr1D 88.038 209 21 3 2522 2726 467129289 467129081 7.540000e-61 244
24 TraesCS7A01G276700 chr4A 88.752 649 55 5 1886 2519 733536755 733536110 0.000000e+00 778
25 TraesCS7A01G276700 chr4A 88.308 650 56 5 1886 2520 6818789 6819433 0.000000e+00 761
26 TraesCS7A01G276700 chr4A 91.925 161 13 0 1 161 146758422 146758262 2.730000e-55 226
27 TraesCS7A01G276700 chr4A 79.581 191 28 9 2520 2700 715078431 715078242 2.850000e-25 126
28 TraesCS7A01G276700 chr4A 79.581 191 28 9 2520 2700 715081142 715080953 2.850000e-25 126
29 TraesCS7A01G276700 chr5D 87.952 664 61 6 1886 2534 457668717 457669376 0.000000e+00 765
30 TraesCS7A01G276700 chr5D 88.599 614 56 8 1911 2519 363885574 363884970 0.000000e+00 734
31 TraesCS7A01G276700 chr5D 92.405 158 12 0 1 158 352931807 352931964 2.730000e-55 226
32 TraesCS7A01G276700 chr5D 90.110 91 9 0 1207 1297 436971851 436971941 4.770000e-23 119
33 TraesCS7A01G276700 chr5D 79.330 179 26 5 2522 2689 498473721 498473543 6.170000e-22 115
34 TraesCS7A01G276700 chr2B 88.418 613 55 3 1929 2526 94937876 94937265 0.000000e+00 725
35 TraesCS7A01G276700 chrUn 88.216 611 57 2 1925 2520 8098188 8098798 0.000000e+00 715
36 TraesCS7A01G276700 chrUn 81.618 136 18 6 2594 2726 45418664 45418533 3.710000e-19 106
37 TraesCS7A01G276700 chr2A 92.308 416 30 1 2106 2519 13066513 13066928 8.410000e-165 590
38 TraesCS7A01G276700 chr2A 88.517 209 20 3 2522 2726 673015618 673015826 1.620000e-62 250
39 TraesCS7A01G276700 chr2A 91.975 162 13 0 1 162 612669855 612669694 7.590000e-56 228
40 TraesCS7A01G276700 chr6B 86.957 460 44 6 1886 2332 599983706 599983250 1.130000e-138 503
41 TraesCS7A01G276700 chr6D 88.302 265 21 5 525 780 270874227 270873964 2.640000e-80 309
42 TraesCS7A01G276700 chr5B 88.048 251 21 5 538 780 347589585 347589336 3.430000e-74 289
43 TraesCS7A01G276700 chr5B 90.110 91 9 0 1207 1297 531187525 531187615 4.770000e-23 119
44 TraesCS7A01G276700 chr5B 90.909 88 8 0 1207 1294 531274891 531274978 4.770000e-23 119
45 TraesCS7A01G276700 chr5A 87.500 256 21 5 537 781 34841914 34842169 4.440000e-73 285
46 TraesCS7A01G276700 chr5A 91.925 161 13 0 1 161 1838800 1838640 2.730000e-55 226
47 TraesCS7A01G276700 chr5A 91.209 91 8 0 1207 1297 552232949 552233039 1.020000e-24 124
48 TraesCS7A01G276700 chr1B 86.973 261 20 9 527 777 410761023 410761279 5.750000e-72 281
49 TraesCS7A01G276700 chr1A 92.638 163 12 0 1 163 91172767 91172605 4.540000e-58 235
50 TraesCS7A01G276700 chr6A 92.405 158 12 0 1 158 208378432 208378589 2.730000e-55 226
51 TraesCS7A01G276700 chr6A 91.772 158 13 0 1 158 426635644 426635801 1.270000e-53 220
52 TraesCS7A01G276700 chr3B 81.111 180 22 6 2522 2689 759096506 759096327 1.700000e-27 134
53 TraesCS7A01G276700 chr3B 85.841 113 14 2 1191 1303 794396438 794396328 4.770000e-23 119
54 TraesCS7A01G276700 chr3A 88.660 97 10 1 1207 1303 723566050 723565955 1.720000e-22 117
55 TraesCS7A01G276700 chr3D 84.956 113 15 2 1191 1303 592761225 592761335 2.220000e-21 113


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G276700 chr7A 289159482 289162207 2725 True 5035.000000 5035 100.000000 1 2726 1 chr7A.!!$R5 2725
1 TraesCS7A01G276700 chr7A 41403844 41404490 646 True 817.000000 817 89.831000 1885 2518 1 chr7A.!!$R3 633
2 TraesCS7A01G276700 chr7A 41366572 41367219 647 True 802.000000 802 89.368000 1885 2518 1 chr7A.!!$R2 633
3 TraesCS7A01G276700 chr7A 5855169 5855820 651 True 713.000000 713 86.758000 1886 2527 1 chr7A.!!$R1 641
4 TraesCS7A01G276700 chr7D 182612995 182613642 647 False 737.000000 737 87.558000 1884 2519 1 chr7D.!!$F1 635
5 TraesCS7A01G276700 chr7D 265003957 265005499 1542 True 647.666667 1517 87.613333 266 2709 3 chr7D.!!$R6 2443
6 TraesCS7A01G276700 chr7D 613863392 613864019 627 True 612.000000 612 84.592000 1886 2519 1 chr7D.!!$R5 633
7 TraesCS7A01G276700 chr7B 245211159 245213968 2809 True 615.000000 1504 92.340333 266 1869 3 chr7B.!!$R1 1603
8 TraesCS7A01G276700 chr2D 579754362 579755009 647 True 870.000000 870 91.258000 1883 2519 1 chr2D.!!$R1 636
9 TraesCS7A01G276700 chr1D 282130516 282131165 649 True 800.000000 800 89.247000 1887 2522 1 chr1D.!!$R1 635
10 TraesCS7A01G276700 chr1D 491721462 491722082 620 True 736.000000 736 88.443000 1925 2531 1 chr1D.!!$R3 606
11 TraesCS7A01G276700 chr4A 733536110 733536755 645 True 778.000000 778 88.752000 1886 2519 1 chr4A.!!$R2 633
12 TraesCS7A01G276700 chr4A 6818789 6819433 644 False 761.000000 761 88.308000 1886 2520 1 chr4A.!!$F1 634
13 TraesCS7A01G276700 chr5D 457668717 457669376 659 False 765.000000 765 87.952000 1886 2534 1 chr5D.!!$F3 648
14 TraesCS7A01G276700 chr5D 363884970 363885574 604 True 734.000000 734 88.599000 1911 2519 1 chr5D.!!$R1 608
15 TraesCS7A01G276700 chr2B 94937265 94937876 611 True 725.000000 725 88.418000 1929 2526 1 chr2B.!!$R1 597
16 TraesCS7A01G276700 chrUn 8098188 8098798 610 False 715.000000 715 88.216000 1925 2520 1 chrUn.!!$F1 595

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
208 209 0.106335 CGGCTCCTGATCAAGCAGAT 59.894 55.0 18.66 0.0 40.36 2.90 F
413 1847 0.405585 CAAGGGTTCATGAGGGTGGT 59.594 55.0 0.00 0.0 0.00 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1693 3167 0.310854 CGGCCAACAAACTGGACTTC 59.689 55.0 2.24 0.0 43.07 3.01 R
2305 3807 0.387622 CGGGAAGTCGTCGTGCTAAA 60.388 55.0 0.00 0.0 0.00 1.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 4.908601 TGAGCCTAGACTCAATGGAAAA 57.091 40.909 6.25 0.00 43.59 2.29
27 28 5.241403 TGAGCCTAGACTCAATGGAAAAA 57.759 39.130 6.25 0.00 43.59 1.94
28 29 5.819991 TGAGCCTAGACTCAATGGAAAAAT 58.180 37.500 6.25 0.00 43.59 1.82
29 30 6.248433 TGAGCCTAGACTCAATGGAAAAATT 58.752 36.000 6.25 0.00 43.59 1.82
30 31 6.375455 TGAGCCTAGACTCAATGGAAAAATTC 59.625 38.462 6.25 0.00 43.59 2.17
31 32 6.183360 GAGCCTAGACTCAATGGAAAAATTCC 60.183 42.308 0.51 2.12 42.14 3.01
32 33 8.285329 GAGCCTAGACTCAATGGAAAAATTCCT 61.285 40.741 10.28 0.00 42.21 3.36
44 45 6.785488 GGAAAAATTCCTTTGATGTCAACC 57.215 37.500 1.86 0.00 46.57 3.77
45 46 6.287525 GGAAAAATTCCTTTGATGTCAACCA 58.712 36.000 1.86 0.00 46.57 3.67
46 47 6.765512 GGAAAAATTCCTTTGATGTCAACCAA 59.234 34.615 1.86 0.00 46.57 3.67
47 48 7.281999 GGAAAAATTCCTTTGATGTCAACCAAA 59.718 33.333 1.86 4.41 46.57 3.28
48 49 8.750515 AAAAATTCCTTTGATGTCAACCAAAT 57.249 26.923 0.00 0.00 35.28 2.32
49 50 7.733402 AAATTCCTTTGATGTCAACCAAATG 57.267 32.000 0.00 3.42 35.28 2.32
50 51 6.669125 ATTCCTTTGATGTCAACCAAATGA 57.331 33.333 0.00 5.19 35.28 2.57
62 63 6.331369 TCAACCAAATGACATCTCTTTTCC 57.669 37.500 0.00 0.00 0.00 3.13
63 64 6.070656 TCAACCAAATGACATCTCTTTTCCT 58.929 36.000 0.00 0.00 0.00 3.36
64 65 7.230747 TCAACCAAATGACATCTCTTTTCCTA 58.769 34.615 0.00 0.00 0.00 2.94
65 66 7.890127 TCAACCAAATGACATCTCTTTTCCTAT 59.110 33.333 0.00 0.00 0.00 2.57
66 67 8.526147 CAACCAAATGACATCTCTTTTCCTATT 58.474 33.333 0.00 0.00 0.00 1.73
67 68 8.655935 ACCAAATGACATCTCTTTTCCTATTT 57.344 30.769 0.00 0.00 0.00 1.40
68 69 8.743714 ACCAAATGACATCTCTTTTCCTATTTC 58.256 33.333 0.00 0.00 0.00 2.17
69 70 8.964772 CCAAATGACATCTCTTTTCCTATTTCT 58.035 33.333 0.00 0.00 0.00 2.52
74 75 9.035890 TGACATCTCTTTTCCTATTTCTACTCA 57.964 33.333 0.00 0.00 0.00 3.41
79 80 9.937876 TCTCTTTTCCTATTTCTACTCATAGGA 57.062 33.333 4.13 4.13 46.34 2.94
96 97 9.857656 ACTCATAGGATTTGAAATACATGACAT 57.142 29.630 2.55 0.00 0.00 3.06
101 102 8.991783 AGGATTTGAAATACATGACATCTCAT 57.008 30.769 2.55 0.00 37.65 2.90
102 103 9.417561 AGGATTTGAAATACATGACATCTCATT 57.582 29.630 2.55 0.00 34.65 2.57
156 157 9.746457 ATCCTATCTTATAAATCAAAAGAGGCC 57.254 33.333 0.00 0.00 33.05 5.19
157 158 8.949421 TCCTATCTTATAAATCAAAAGAGGCCT 58.051 33.333 3.86 3.86 33.05 5.19
158 159 9.007901 CCTATCTTATAAATCAAAAGAGGCCTG 57.992 37.037 12.00 0.00 33.05 4.85
159 160 9.784531 CTATCTTATAAATCAAAAGAGGCCTGA 57.215 33.333 12.00 0.60 33.05 3.86
160 161 8.688747 ATCTTATAAATCAAAAGAGGCCTGAG 57.311 34.615 12.00 0.00 33.05 3.35
161 162 7.056635 TCTTATAAATCAAAAGAGGCCTGAGG 58.943 38.462 12.00 0.00 0.00 3.86
162 163 3.814504 AAATCAAAAGAGGCCTGAGGA 57.185 42.857 12.00 0.00 0.00 3.71
163 164 3.814504 AATCAAAAGAGGCCTGAGGAA 57.185 42.857 12.00 0.00 0.00 3.36
164 165 3.814504 ATCAAAAGAGGCCTGAGGAAA 57.185 42.857 12.00 0.00 0.00 3.13
165 166 2.863809 TCAAAAGAGGCCTGAGGAAAC 58.136 47.619 12.00 0.00 0.00 2.78
166 167 1.889170 CAAAAGAGGCCTGAGGAAACC 59.111 52.381 12.00 0.00 0.00 3.27
167 168 0.405973 AAAGAGGCCTGAGGAAACCC 59.594 55.000 12.00 0.00 0.00 4.11
168 169 0.476611 AAGAGGCCTGAGGAAACCCT 60.477 55.000 12.00 0.00 36.57 4.34
169 170 0.476611 AGAGGCCTGAGGAAACCCTT 60.477 55.000 12.00 0.00 33.25 3.95
170 171 0.405973 GAGGCCTGAGGAAACCCTTT 59.594 55.000 12.00 0.00 33.25 3.11
171 172 0.860457 AGGCCTGAGGAAACCCTTTT 59.140 50.000 3.11 0.00 33.25 2.27
172 173 1.220493 AGGCCTGAGGAAACCCTTTTT 59.780 47.619 3.11 0.00 33.25 1.94
173 174 1.618837 GGCCTGAGGAAACCCTTTTTC 59.381 52.381 0.65 0.00 33.25 2.29
174 175 1.269723 GCCTGAGGAAACCCTTTTTCG 59.730 52.381 0.65 0.00 33.25 3.46
175 176 1.886542 CCTGAGGAAACCCTTTTTCGG 59.113 52.381 0.00 0.00 33.25 4.30
176 177 2.583143 CTGAGGAAACCCTTTTTCGGT 58.417 47.619 0.00 0.00 33.25 4.69
177 178 3.497227 CCTGAGGAAACCCTTTTTCGGTA 60.497 47.826 0.00 0.00 33.25 4.02
178 179 4.139038 CTGAGGAAACCCTTTTTCGGTAA 58.861 43.478 0.00 0.00 33.25 2.85
179 180 4.732065 TGAGGAAACCCTTTTTCGGTAAT 58.268 39.130 0.00 0.00 33.25 1.89
180 181 4.521256 TGAGGAAACCCTTTTTCGGTAATG 59.479 41.667 0.00 0.00 33.25 1.90
181 182 4.732065 AGGAAACCCTTTTTCGGTAATGA 58.268 39.130 0.00 0.00 31.69 2.57
182 183 5.141910 AGGAAACCCTTTTTCGGTAATGAA 58.858 37.500 0.00 0.00 31.69 2.57
183 184 5.599242 AGGAAACCCTTTTTCGGTAATGAAA 59.401 36.000 0.00 0.00 36.12 2.69
184 185 6.098552 AGGAAACCCTTTTTCGGTAATGAAAA 59.901 34.615 0.00 0.00 43.92 2.29
194 195 3.759527 GGTAATGAAAAAGACCGGCTC 57.240 47.619 0.00 0.00 0.00 4.70
195 196 2.422479 GGTAATGAAAAAGACCGGCTCC 59.578 50.000 0.00 0.00 0.00 4.70
196 197 2.586648 AATGAAAAAGACCGGCTCCT 57.413 45.000 0.00 0.00 0.00 3.69
197 198 1.826385 ATGAAAAAGACCGGCTCCTG 58.174 50.000 0.00 0.00 0.00 3.86
198 199 0.762418 TGAAAAAGACCGGCTCCTGA 59.238 50.000 0.00 0.00 0.00 3.86
199 200 1.351017 TGAAAAAGACCGGCTCCTGAT 59.649 47.619 0.00 0.00 0.00 2.90
200 201 2.010497 GAAAAAGACCGGCTCCTGATC 58.990 52.381 0.00 0.00 0.00 2.92
201 202 0.984230 AAAAGACCGGCTCCTGATCA 59.016 50.000 0.00 0.00 0.00 2.92
202 203 0.984230 AAAGACCGGCTCCTGATCAA 59.016 50.000 0.00 0.00 0.00 2.57
203 204 0.539051 AAGACCGGCTCCTGATCAAG 59.461 55.000 0.00 0.00 0.00 3.02
204 205 1.522580 GACCGGCTCCTGATCAAGC 60.523 63.158 10.41 10.41 37.80 4.01
205 206 2.244117 GACCGGCTCCTGATCAAGCA 62.244 60.000 18.66 0.00 40.36 3.91
206 207 1.523258 CCGGCTCCTGATCAAGCAG 60.523 63.158 18.66 14.97 40.36 4.24
207 208 1.519246 CGGCTCCTGATCAAGCAGA 59.481 57.895 18.66 3.56 40.36 4.26
208 209 0.106335 CGGCTCCTGATCAAGCAGAT 59.894 55.000 18.66 0.00 40.36 2.90
209 210 1.342496 CGGCTCCTGATCAAGCAGATA 59.658 52.381 18.66 0.00 40.36 1.98
210 211 2.028294 CGGCTCCTGATCAAGCAGATAT 60.028 50.000 18.66 0.00 40.36 1.63
211 212 3.556633 CGGCTCCTGATCAAGCAGATATT 60.557 47.826 18.66 0.00 40.36 1.28
212 213 3.752222 GGCTCCTGATCAAGCAGATATTG 59.248 47.826 18.66 0.00 40.36 1.90
213 214 4.504514 GGCTCCTGATCAAGCAGATATTGA 60.505 45.833 18.66 0.00 40.36 2.57
214 215 4.451774 GCTCCTGATCAAGCAGATATTGAC 59.548 45.833 13.41 0.00 39.36 3.18
215 216 4.965814 TCCTGATCAAGCAGATATTGACC 58.034 43.478 0.00 0.00 39.36 4.02
216 217 4.409901 TCCTGATCAAGCAGATATTGACCA 59.590 41.667 0.00 0.00 39.36 4.02
217 218 5.072736 TCCTGATCAAGCAGATATTGACCAT 59.927 40.000 0.00 0.00 39.36 3.55
218 219 5.768662 CCTGATCAAGCAGATATTGACCATT 59.231 40.000 0.00 0.00 39.36 3.16
219 220 6.264744 CCTGATCAAGCAGATATTGACCATTT 59.735 38.462 0.00 0.00 39.36 2.32
220 221 7.268199 TGATCAAGCAGATATTGACCATTTC 57.732 36.000 0.00 0.00 39.36 2.17
221 222 7.058525 TGATCAAGCAGATATTGACCATTTCT 58.941 34.615 0.00 0.00 39.36 2.52
222 223 7.558807 TGATCAAGCAGATATTGACCATTTCTT 59.441 33.333 0.00 0.00 39.36 2.52
223 224 7.092137 TCAAGCAGATATTGACCATTTCTTG 57.908 36.000 0.00 0.00 31.86 3.02
224 225 5.511234 AGCAGATATTGACCATTTCTTGC 57.489 39.130 0.00 0.00 0.00 4.01
225 226 4.036027 AGCAGATATTGACCATTTCTTGCG 59.964 41.667 0.00 0.00 30.04 4.85
226 227 4.035558 GCAGATATTGACCATTTCTTGCGA 59.964 41.667 0.00 0.00 0.00 5.10
227 228 5.449041 GCAGATATTGACCATTTCTTGCGAA 60.449 40.000 0.00 0.00 0.00 4.70
228 229 6.197276 CAGATATTGACCATTTCTTGCGAAG 58.803 40.000 0.00 0.00 0.00 3.79
255 256 1.596727 GGAACGAGAATGAGAGCATGC 59.403 52.381 10.51 10.51 34.26 4.06
256 257 1.257415 GAACGAGAATGAGAGCATGCG 59.743 52.381 13.01 0.00 35.04 4.73
257 258 0.457443 ACGAGAATGAGAGCATGCGA 59.543 50.000 13.01 0.00 35.04 5.10
258 259 0.851495 CGAGAATGAGAGCATGCGAC 59.149 55.000 13.01 10.86 35.04 5.19
259 260 1.535649 CGAGAATGAGAGCATGCGACT 60.536 52.381 13.01 15.69 35.04 4.18
260 261 2.126467 GAGAATGAGAGCATGCGACTC 58.874 52.381 28.17 28.17 35.04 3.36
261 262 1.479730 AGAATGAGAGCATGCGACTCA 59.520 47.619 34.26 34.26 43.25 3.41
262 263 1.859703 GAATGAGAGCATGCGACTCAG 59.140 52.381 34.60 0.00 42.55 3.35
263 264 0.530211 ATGAGAGCATGCGACTCAGC 60.530 55.000 34.60 19.55 42.55 4.26
264 265 1.141449 GAGAGCATGCGACTCAGCT 59.859 57.895 29.15 14.34 40.60 4.24
287 288 2.154798 TTGGGCGAGTTGACGAGAGG 62.155 60.000 0.00 0.00 35.09 3.69
292 293 3.282745 GAGTTGACGAGAGGCCGCA 62.283 63.158 9.88 0.00 39.67 5.69
293 294 3.112709 GTTGACGAGAGGCCGCAC 61.113 66.667 9.88 0.35 39.67 5.34
320 321 4.419522 TGGCGATTTAAGCTTGAAAGTC 57.580 40.909 9.86 8.21 34.52 3.01
326 327 5.444745 CGATTTAAGCTTGAAAGTCGAGACC 60.445 44.000 17.36 0.00 29.08 3.85
333 334 1.079127 AAAGTCGAGACCCATGGCG 60.079 57.895 6.09 4.48 0.00 5.69
405 1839 2.240667 AGATGGACTCCAAGGGTTCATG 59.759 50.000 0.66 0.00 36.95 3.07
413 1847 0.405585 CAAGGGTTCATGAGGGTGGT 59.594 55.000 0.00 0.00 0.00 4.16
506 1943 3.740764 GCCTTTGGTTTTCACAAGCATGA 60.741 43.478 0.00 0.00 0.00 3.07
559 1996 9.647797 TTTCGTTTCTTTAGTCTGCATATAAGA 57.352 29.630 0.00 0.00 0.00 2.10
560 1997 9.817809 TTCGTTTCTTTAGTCTGCATATAAGAT 57.182 29.630 0.00 0.00 0.00 2.40
561 1998 9.817809 TCGTTTCTTTAGTCTGCATATAAGATT 57.182 29.630 0.00 0.00 0.00 2.40
565 2002 9.905713 TTCTTTAGTCTGCATATAAGATTTGGT 57.094 29.630 0.00 0.00 0.00 3.67
566 2003 9.547753 TCTTTAGTCTGCATATAAGATTTGGTC 57.452 33.333 0.00 0.00 0.00 4.02
567 2004 9.330063 CTTTAGTCTGCATATAAGATTTGGTCA 57.670 33.333 0.00 0.00 0.00 4.02
568 2005 9.679661 TTTAGTCTGCATATAAGATTTGGTCAA 57.320 29.630 0.00 0.00 0.00 3.18
569 2006 9.679661 TTAGTCTGCATATAAGATTTGGTCAAA 57.320 29.630 0.00 0.00 34.46 2.69
570 2007 8.218338 AGTCTGCATATAAGATTTGGTCAAAG 57.782 34.615 2.55 0.00 33.32 2.77
571 2008 7.831193 AGTCTGCATATAAGATTTGGTCAAAGT 59.169 33.333 2.55 0.00 33.32 2.66
572 2009 8.125448 GTCTGCATATAAGATTTGGTCAAAGTC 58.875 37.037 2.55 1.51 33.32 3.01
573 2010 7.828717 TCTGCATATAAGATTTGGTCAAAGTCA 59.171 33.333 2.55 0.00 33.32 3.41
574 2011 8.347004 TGCATATAAGATTTGGTCAAAGTCAA 57.653 30.769 2.55 0.00 33.32 3.18
575 2012 8.801299 TGCATATAAGATTTGGTCAAAGTCAAA 58.199 29.630 2.55 0.00 37.29 2.69
576 2013 9.076596 GCATATAAGATTTGGTCAAAGTCAAAC 57.923 33.333 2.55 0.00 35.97 2.93
592 2029 8.831715 AAAGTCAAACTTTGTCAATTTTGAGT 57.168 26.923 17.24 17.24 45.83 3.41
593 2030 9.921637 AAAGTCAAACTTTGTCAATTTTGAGTA 57.078 25.926 20.48 4.58 45.83 2.59
594 2031 9.921637 AAGTCAAACTTTGTCAATTTTGAGTAA 57.078 25.926 20.48 4.34 41.17 2.24
595 2032 9.573133 AGTCAAACTTTGTCAATTTTGAGTAAG 57.427 29.630 19.56 10.50 40.66 2.34
596 2033 9.353999 GTCAAACTTTGTCAATTTTGAGTAAGT 57.646 29.630 17.24 11.38 40.38 2.24
597 2034 9.921637 TCAAACTTTGTCAATTTTGAGTAAGTT 57.078 25.926 18.03 18.03 44.79 2.66
777 2214 8.768501 AAAGATTAAAAAGAAACAGAGGGAGT 57.231 30.769 0.00 0.00 0.00 3.85
778 2215 9.862149 AAAGATTAAAAAGAAACAGAGGGAGTA 57.138 29.630 0.00 0.00 0.00 2.59
788 2225 4.993705 ACAGAGGGAGTATTTTGGTTCA 57.006 40.909 0.00 0.00 0.00 3.18
851 2288 0.467844 TGCATTCACCAACCAGCTGT 60.468 50.000 13.81 0.00 0.00 4.40
1096 2542 2.818432 CAAGTGCAAGAAATGGAGAGCT 59.182 45.455 0.00 0.00 0.00 4.09
1417 2866 0.531532 CGGAGATAGTGGCCAAGCTG 60.532 60.000 7.24 0.00 0.00 4.24
1458 2916 3.157252 AGCTGGATCGCCGATGGT 61.157 61.111 3.34 0.00 36.79 3.55
1551 3021 2.431771 TAAGACGCACGCACGCAT 60.432 55.556 0.00 0.00 36.19 4.73
1568 3038 1.743772 GCATGCGTATGGAGTGGACTT 60.744 52.381 15.54 0.00 34.79 3.01
1580 3050 3.873952 GGAGTGGACTTGAATGCATCTAC 59.126 47.826 0.00 0.00 0.00 2.59
1581 3051 4.383552 GGAGTGGACTTGAATGCATCTACT 60.384 45.833 0.00 0.00 35.81 2.57
1582 3052 4.764172 AGTGGACTTGAATGCATCTACTC 58.236 43.478 0.00 0.00 27.68 2.59
1583 3053 3.873952 GTGGACTTGAATGCATCTACTCC 59.126 47.826 0.00 1.59 0.00 3.85
1584 3054 3.776969 TGGACTTGAATGCATCTACTCCT 59.223 43.478 0.00 0.00 0.00 3.69
1585 3055 4.962362 TGGACTTGAATGCATCTACTCCTA 59.038 41.667 0.00 0.00 0.00 2.94
1597 3067 4.167652 TCTACTCCTAGTAGCTTGTCCC 57.832 50.000 8.87 0.00 45.93 4.46
1713 3187 0.106918 AAGTCCAGTTTGTTGGCCGA 60.107 50.000 0.00 0.00 38.16 5.54
1715 3189 1.896660 TCCAGTTTGTTGGCCGAGC 60.897 57.895 0.00 0.00 38.16 5.03
1735 3209 6.929049 CCGAGCTGATTATACAATAAACCAGA 59.071 38.462 0.00 0.00 0.00 3.86
1794 3271 9.376075 CATATCATAGTAACCAAATCAGCTAGG 57.624 37.037 0.00 0.00 0.00 3.02
1798 3275 7.346175 TCATAGTAACCAAATCAGCTAGGGTAA 59.654 37.037 0.00 0.00 0.00 2.85
1799 3276 6.382919 AGTAACCAAATCAGCTAGGGTAAA 57.617 37.500 0.00 0.00 0.00 2.01
1802 3287 3.010138 ACCAAATCAGCTAGGGTAAAGCA 59.990 43.478 0.00 0.00 42.62 3.91
1810 3295 1.689273 CTAGGGTAAAGCATCGCTCCT 59.311 52.381 0.37 0.37 38.25 3.69
1815 3300 2.488153 GGTAAAGCATCGCTCCTTTGTT 59.512 45.455 0.00 0.00 38.25 2.83
1832 3317 6.790285 CTTTGTTGAAGGCATTGCTTAAAT 57.210 33.333 8.82 0.00 0.00 1.40
1833 3318 7.193377 CTTTGTTGAAGGCATTGCTTAAATT 57.807 32.000 8.82 0.00 0.00 1.82
1834 3319 7.565323 TTTGTTGAAGGCATTGCTTAAATTT 57.435 28.000 8.82 0.00 0.00 1.82
1835 3320 6.542574 TGTTGAAGGCATTGCTTAAATTTG 57.457 33.333 8.82 0.00 0.00 2.32
1836 3321 5.049543 TGTTGAAGGCATTGCTTAAATTTGC 60.050 36.000 8.82 0.00 0.00 3.68
1837 3322 4.897140 TGAAGGCATTGCTTAAATTTGCT 58.103 34.783 8.82 0.00 0.00 3.91
1838 3323 4.931002 TGAAGGCATTGCTTAAATTTGCTC 59.069 37.500 8.82 0.00 0.00 4.26
1839 3324 3.514645 AGGCATTGCTTAAATTTGCTCG 58.485 40.909 8.82 0.00 0.00 5.03
1840 3325 3.193267 AGGCATTGCTTAAATTTGCTCGA 59.807 39.130 8.82 0.00 0.00 4.04
1841 3326 3.925913 GGCATTGCTTAAATTTGCTCGAA 59.074 39.130 8.82 0.00 0.00 3.71
1842 3327 4.201618 GGCATTGCTTAAATTTGCTCGAAC 60.202 41.667 8.82 0.00 0.00 3.95
1843 3328 4.385447 GCATTGCTTAAATTTGCTCGAACA 59.615 37.500 0.16 0.00 0.00 3.18
1844 3329 5.062558 GCATTGCTTAAATTTGCTCGAACAT 59.937 36.000 0.16 0.00 0.00 2.71
1845 3330 6.253298 GCATTGCTTAAATTTGCTCGAACATA 59.747 34.615 0.16 0.00 0.00 2.29
1846 3331 7.043192 GCATTGCTTAAATTTGCTCGAACATAT 60.043 33.333 0.16 0.00 0.00 1.78
1847 3332 8.810427 CATTGCTTAAATTTGCTCGAACATATT 58.190 29.630 0.00 0.00 0.00 1.28
1848 3333 7.969387 TGCTTAAATTTGCTCGAACATATTC 57.031 32.000 0.00 0.00 0.00 1.75
1849 3334 7.761409 TGCTTAAATTTGCTCGAACATATTCT 58.239 30.769 0.00 0.67 32.12 2.40
1850 3335 8.243426 TGCTTAAATTTGCTCGAACATATTCTT 58.757 29.630 0.00 0.00 32.12 2.52
1851 3336 8.737648 GCTTAAATTTGCTCGAACATATTCTTC 58.262 33.333 0.00 0.00 32.12 2.87
1852 3337 9.773328 CTTAAATTTGCTCGAACATATTCTTCA 57.227 29.630 0.00 0.00 32.12 3.02
1854 3339 8.679288 AAATTTGCTCGAACATATTCTTCAAG 57.321 30.769 5.20 0.00 32.12 3.02
1855 3340 7.615582 ATTTGCTCGAACATATTCTTCAAGA 57.384 32.000 0.00 0.00 32.12 3.02
1856 3341 7.615582 TTTGCTCGAACATATTCTTCAAGAT 57.384 32.000 0.00 0.00 32.12 2.40
1857 3342 6.594284 TGCTCGAACATATTCTTCAAGATG 57.406 37.500 0.00 0.00 37.27 2.90
1858 3343 6.340522 TGCTCGAACATATTCTTCAAGATGA 58.659 36.000 0.00 0.00 35.19 2.92
1859 3344 6.818142 TGCTCGAACATATTCTTCAAGATGAA 59.182 34.615 0.00 1.55 35.19 2.57
1860 3345 7.334171 TGCTCGAACATATTCTTCAAGATGAAA 59.666 33.333 0.00 0.00 35.73 2.69
1861 3346 8.177663 GCTCGAACATATTCTTCAAGATGAAAA 58.822 33.333 0.00 0.00 35.73 2.29
1862 3347 9.483062 CTCGAACATATTCTTCAAGATGAAAAC 57.517 33.333 0.00 0.00 35.73 2.43
1863 3348 8.450964 TCGAACATATTCTTCAAGATGAAAACC 58.549 33.333 0.00 0.00 35.73 3.27
1864 3349 8.454106 CGAACATATTCTTCAAGATGAAAACCT 58.546 33.333 0.00 0.00 35.73 3.50
1873 3358 8.630037 TCTTCAAGATGAAAACCTAAAAAGTCC 58.370 33.333 0.00 0.00 35.73 3.85
1874 3359 7.889873 TCAAGATGAAAACCTAAAAAGTCCA 57.110 32.000 0.00 0.00 0.00 4.02
1875 3360 8.477419 TCAAGATGAAAACCTAAAAAGTCCAT 57.523 30.769 0.00 0.00 0.00 3.41
1876 3361 8.359642 TCAAGATGAAAACCTAAAAAGTCCATG 58.640 33.333 0.00 0.00 0.00 3.66
1877 3362 7.232118 AGATGAAAACCTAAAAAGTCCATGG 57.768 36.000 4.97 4.97 0.00 3.66
1878 3363 7.010160 AGATGAAAACCTAAAAAGTCCATGGA 58.990 34.615 11.44 11.44 0.00 3.41
1879 3364 6.648879 TGAAAACCTAAAAAGTCCATGGAG 57.351 37.500 16.81 2.93 0.00 3.86
1880 3365 5.010617 TGAAAACCTAAAAAGTCCATGGAGC 59.989 40.000 16.81 10.43 0.00 4.70
1881 3366 3.806949 ACCTAAAAAGTCCATGGAGCA 57.193 42.857 16.81 0.00 0.00 4.26
2009 3496 4.804420 TGGATCTCGGCCCCTGCT 62.804 66.667 0.00 0.00 37.74 4.24
2021 3508 3.324930 CCTGCTGGTGAGAGGGCA 61.325 66.667 0.51 0.00 0.00 5.36
2071 3560 2.435372 AGGGTTTGTGTTCTGCTCAA 57.565 45.000 0.00 0.00 0.00 3.02
2163 3665 2.524640 TGGGCGTGTGGAGGTGTA 60.525 61.111 0.00 0.00 0.00 2.90
2300 3802 3.007074 TGTTCTGGTGCGTTGGTTCTATA 59.993 43.478 0.00 0.00 0.00 1.31
2305 3807 2.167900 GGTGCGTTGGTTCTATAGGACT 59.832 50.000 11.07 0.00 0.00 3.85
2371 3873 4.722535 TTCAGCGAGGGAGGGGCT 62.723 66.667 0.00 0.00 37.55 5.19
2403 3907 1.372997 GTTCGGCTCGCTTCAGTGA 60.373 57.895 0.00 0.00 0.00 3.41
2405 3909 0.458543 TTCGGCTCGCTTCAGTGATC 60.459 55.000 0.00 0.00 33.67 2.92
2545 4049 9.578439 GATGAAAACCTAGAAATTGATCTTTGG 57.422 33.333 0.00 0.00 0.00 3.28
2555 4059 5.410355 AATTGATCTTTGGTGGTTGGATG 57.590 39.130 0.00 0.00 0.00 3.51
2558 4062 0.893270 TCTTTGGTGGTTGGATGCGG 60.893 55.000 0.00 0.00 0.00 5.69
2563 4067 0.606944 GGTGGTTGGATGCGGTAACA 60.607 55.000 0.00 0.00 0.00 2.41
2564 4068 1.240256 GTGGTTGGATGCGGTAACAA 58.760 50.000 0.00 0.00 0.00 2.83
2566 4070 1.883275 TGGTTGGATGCGGTAACAAAG 59.117 47.619 0.00 0.00 0.00 2.77
2588 4092 0.111089 GCTTGAGCGTCAGTTTCGTG 60.111 55.000 0.00 0.00 0.00 4.35
2592 4099 0.784778 GAGCGTCAGTTTCGTGAAGG 59.215 55.000 0.00 0.00 0.00 3.46
2625 4132 1.135527 AGAACGTCGTTGTCCTTGTGA 59.864 47.619 16.75 0.00 0.00 3.58
2656 4164 1.272203 TGGTTGGTGCGGATATGGTTT 60.272 47.619 0.00 0.00 0.00 3.27
2670 4185 8.166706 GCGGATATGGTTTATATTAGTTTGTCG 58.833 37.037 0.00 0.00 32.09 4.35
2696 4211 3.126001 TGTTGATCGCTTCAAGGTCTT 57.874 42.857 1.44 0.00 44.89 3.01
2698 4213 3.882888 TGTTGATCGCTTCAAGGTCTTTT 59.117 39.130 1.44 0.00 44.89 2.27
2723 4238 9.692749 TTTATATATATACTCGCTTGGCATAGC 57.307 33.333 1.73 10.41 37.80 2.97
2724 4239 5.860941 ATATATACTCGCTTGGCATAGCT 57.139 39.130 15.99 0.00 39.03 3.32
2725 4240 2.918712 ATACTCGCTTGGCATAGCTT 57.081 45.000 15.99 6.41 39.03 3.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.819991 TCCATTGAGTCTAGGCTCATTTTT 58.180 37.500 26.91 10.30 43.99 1.94
1 2 5.441718 TCCATTGAGTCTAGGCTCATTTT 57.558 39.130 26.91 12.69 43.99 1.82
2 3 5.441718 TTCCATTGAGTCTAGGCTCATTT 57.558 39.130 26.91 15.12 43.99 2.32
3 4 5.441718 TTTCCATTGAGTCTAGGCTCATT 57.558 39.130 26.91 20.33 43.99 2.57
4 5 5.441718 TTTTCCATTGAGTCTAGGCTCAT 57.558 39.130 26.91 14.39 43.99 2.90
5 6 4.908601 TTTTCCATTGAGTCTAGGCTCA 57.091 40.909 23.07 23.07 43.03 4.26
6 7 6.765915 AATTTTTCCATTGAGTCTAGGCTC 57.234 37.500 17.74 17.74 36.12 4.70
7 8 6.765915 GAATTTTTCCATTGAGTCTAGGCT 57.234 37.500 0.00 0.00 0.00 4.58
22 23 7.784633 TTGGTTGACATCAAAGGAATTTTTC 57.215 32.000 0.00 0.00 37.63 2.29
23 24 8.623030 CATTTGGTTGACATCAAAGGAATTTTT 58.377 29.630 9.43 0.00 36.97 1.94
24 25 7.992033 TCATTTGGTTGACATCAAAGGAATTTT 59.008 29.630 13.20 0.00 39.59 1.82
25 26 7.442062 GTCATTTGGTTGACATCAAAGGAATTT 59.558 33.333 15.68 0.00 42.54 1.82
26 27 6.930722 GTCATTTGGTTGACATCAAAGGAATT 59.069 34.615 15.68 0.00 42.54 2.17
27 28 6.458210 GTCATTTGGTTGACATCAAAGGAAT 58.542 36.000 15.68 0.00 42.54 3.01
28 29 5.841810 GTCATTTGGTTGACATCAAAGGAA 58.158 37.500 15.68 4.09 42.54 3.36
29 30 5.452078 GTCATTTGGTTGACATCAAAGGA 57.548 39.130 12.16 12.16 44.38 3.36
38 39 6.015940 AGGAAAAGAGATGTCATTTGGTTGAC 60.016 38.462 0.00 0.00 45.05 3.18
39 40 6.070656 AGGAAAAGAGATGTCATTTGGTTGA 58.929 36.000 0.00 0.00 0.00 3.18
40 41 6.336842 AGGAAAAGAGATGTCATTTGGTTG 57.663 37.500 0.00 0.00 0.00 3.77
41 42 8.655935 AATAGGAAAAGAGATGTCATTTGGTT 57.344 30.769 0.00 0.00 0.00 3.67
42 43 8.655935 AAATAGGAAAAGAGATGTCATTTGGT 57.344 30.769 0.00 0.00 0.00 3.67
43 44 8.964772 AGAAATAGGAAAAGAGATGTCATTTGG 58.035 33.333 0.00 0.00 0.00 3.28
48 49 9.035890 TGAGTAGAAATAGGAAAAGAGATGTCA 57.964 33.333 0.00 0.00 0.00 3.58
70 71 9.857656 ATGTCATGTATTTCAAATCCTATGAGT 57.142 29.630 0.00 0.00 0.00 3.41
76 77 8.991783 ATGAGATGTCATGTATTTCAAATCCT 57.008 30.769 4.23 0.00 42.19 3.24
130 131 9.746457 GGCCTCTTTTGATTTATAAGATAGGAT 57.254 33.333 0.00 0.00 0.00 3.24
131 132 8.949421 AGGCCTCTTTTGATTTATAAGATAGGA 58.051 33.333 0.00 0.00 0.00 2.94
132 133 9.007901 CAGGCCTCTTTTGATTTATAAGATAGG 57.992 37.037 0.00 0.00 0.00 2.57
133 134 9.784531 TCAGGCCTCTTTTGATTTATAAGATAG 57.215 33.333 0.00 0.00 0.00 2.08
134 135 9.784531 CTCAGGCCTCTTTTGATTTATAAGATA 57.215 33.333 0.00 0.00 0.00 1.98
135 136 7.723172 CCTCAGGCCTCTTTTGATTTATAAGAT 59.277 37.037 0.00 0.00 0.00 2.40
136 137 7.056635 CCTCAGGCCTCTTTTGATTTATAAGA 58.943 38.462 0.00 0.00 0.00 2.10
137 138 7.056635 TCCTCAGGCCTCTTTTGATTTATAAG 58.943 38.462 0.00 0.00 0.00 1.73
138 139 6.969043 TCCTCAGGCCTCTTTTGATTTATAA 58.031 36.000 0.00 0.00 0.00 0.98
139 140 6.575244 TCCTCAGGCCTCTTTTGATTTATA 57.425 37.500 0.00 0.00 0.00 0.98
140 141 5.456921 TCCTCAGGCCTCTTTTGATTTAT 57.543 39.130 0.00 0.00 0.00 1.40
141 142 4.927267 TCCTCAGGCCTCTTTTGATTTA 57.073 40.909 0.00 0.00 0.00 1.40
142 143 3.814504 TCCTCAGGCCTCTTTTGATTT 57.185 42.857 0.00 0.00 0.00 2.17
143 144 3.814504 TTCCTCAGGCCTCTTTTGATT 57.185 42.857 0.00 0.00 0.00 2.57
144 145 3.425659 GTTTCCTCAGGCCTCTTTTGAT 58.574 45.455 0.00 0.00 0.00 2.57
145 146 2.489073 GGTTTCCTCAGGCCTCTTTTGA 60.489 50.000 0.00 0.00 0.00 2.69
146 147 1.889170 GGTTTCCTCAGGCCTCTTTTG 59.111 52.381 0.00 0.00 0.00 2.44
147 148 1.203063 GGGTTTCCTCAGGCCTCTTTT 60.203 52.381 0.00 0.00 0.00 2.27
148 149 0.405973 GGGTTTCCTCAGGCCTCTTT 59.594 55.000 0.00 0.00 0.00 2.52
149 150 0.476611 AGGGTTTCCTCAGGCCTCTT 60.477 55.000 0.00 0.00 39.80 2.85
150 151 0.476611 AAGGGTTTCCTCAGGCCTCT 60.477 55.000 0.00 0.00 44.07 3.69
151 152 0.405973 AAAGGGTTTCCTCAGGCCTC 59.594 55.000 0.00 0.00 44.07 4.70
152 153 0.860457 AAAAGGGTTTCCTCAGGCCT 59.140 50.000 0.00 0.00 44.07 5.19
153 154 1.618837 GAAAAAGGGTTTCCTCAGGCC 59.381 52.381 0.00 0.00 44.07 5.19
154 155 1.269723 CGAAAAAGGGTTTCCTCAGGC 59.730 52.381 0.00 0.00 44.07 4.85
155 156 1.886542 CCGAAAAAGGGTTTCCTCAGG 59.113 52.381 0.00 0.00 44.07 3.86
156 157 2.583143 ACCGAAAAAGGGTTTCCTCAG 58.417 47.619 0.00 0.00 44.07 3.35
157 158 2.740506 ACCGAAAAAGGGTTTCCTCA 57.259 45.000 0.00 0.00 44.07 3.86
158 159 4.763279 TCATTACCGAAAAAGGGTTTCCTC 59.237 41.667 0.00 0.00 44.07 3.71
159 160 5.599242 TTTCATTACCGAAAAAGGGTTTCCT 59.401 36.000 0.00 0.00 38.99 3.36
160 161 5.456548 TTCATTACCGAAAAAGGGTTTCC 57.543 39.130 0.00 0.00 38.99 3.13
161 162 7.773864 TTTTTCATTACCGAAAAAGGGTTTC 57.226 32.000 7.32 0.00 45.35 2.78
174 175 2.422479 GGAGCCGGTCTTTTTCATTACC 59.578 50.000 1.90 0.00 0.00 2.85
175 176 3.127030 CAGGAGCCGGTCTTTTTCATTAC 59.873 47.826 1.90 0.00 0.00 1.89
176 177 3.008594 TCAGGAGCCGGTCTTTTTCATTA 59.991 43.478 1.90 0.00 0.00 1.90
177 178 2.162681 CAGGAGCCGGTCTTTTTCATT 58.837 47.619 1.90 0.00 0.00 2.57
178 179 1.351017 TCAGGAGCCGGTCTTTTTCAT 59.649 47.619 1.90 0.00 0.00 2.57
179 180 0.762418 TCAGGAGCCGGTCTTTTTCA 59.238 50.000 1.90 0.00 0.00 2.69
180 181 2.010497 GATCAGGAGCCGGTCTTTTTC 58.990 52.381 1.90 0.00 0.00 2.29
181 182 1.351017 TGATCAGGAGCCGGTCTTTTT 59.649 47.619 1.90 0.00 0.00 1.94
182 183 0.984230 TGATCAGGAGCCGGTCTTTT 59.016 50.000 1.90 0.00 0.00 2.27
183 184 0.984230 TTGATCAGGAGCCGGTCTTT 59.016 50.000 1.90 0.00 0.00 2.52
184 185 0.539051 CTTGATCAGGAGCCGGTCTT 59.461 55.000 1.90 0.00 0.00 3.01
185 186 1.965754 GCTTGATCAGGAGCCGGTCT 61.966 60.000 9.36 0.00 32.80 3.85
186 187 1.522580 GCTTGATCAGGAGCCGGTC 60.523 63.158 9.36 0.00 32.80 4.79
187 188 2.249413 CTGCTTGATCAGGAGCCGGT 62.249 60.000 15.20 0.00 38.11 5.28
188 189 1.523258 CTGCTTGATCAGGAGCCGG 60.523 63.158 15.20 0.00 38.11 6.13
189 190 0.106335 ATCTGCTTGATCAGGAGCCG 59.894 55.000 15.20 10.00 40.82 5.52
190 191 3.699411 ATATCTGCTTGATCAGGAGCC 57.301 47.619 15.20 0.73 40.82 4.70
191 192 4.451774 GTCAATATCTGCTTGATCAGGAGC 59.548 45.833 9.36 10.70 40.82 4.70
192 193 4.996122 GGTCAATATCTGCTTGATCAGGAG 59.004 45.833 9.36 8.03 42.42 3.69
193 194 4.409901 TGGTCAATATCTGCTTGATCAGGA 59.590 41.667 9.36 0.92 38.48 3.86
194 195 4.711399 TGGTCAATATCTGCTTGATCAGG 58.289 43.478 0.00 0.00 38.48 3.86
195 196 6.879276 AATGGTCAATATCTGCTTGATCAG 57.121 37.500 5.06 0.00 44.50 2.90
196 197 7.058525 AGAAATGGTCAATATCTGCTTGATCA 58.941 34.615 1.55 1.55 45.15 2.92
197 198 7.507733 AGAAATGGTCAATATCTGCTTGATC 57.492 36.000 0.00 0.00 35.26 2.92
198 199 7.683704 GCAAGAAATGGTCAATATCTGCTTGAT 60.684 37.037 0.00 0.00 35.26 2.57
199 200 6.405065 GCAAGAAATGGTCAATATCTGCTTGA 60.405 38.462 0.00 0.00 32.92 3.02
200 201 5.747197 GCAAGAAATGGTCAATATCTGCTTG 59.253 40.000 0.00 0.00 33.95 4.01
201 202 5.449588 CGCAAGAAATGGTCAATATCTGCTT 60.450 40.000 0.00 0.00 43.02 3.91
202 203 4.036027 CGCAAGAAATGGTCAATATCTGCT 59.964 41.667 0.00 0.00 43.02 4.24
203 204 4.285292 CGCAAGAAATGGTCAATATCTGC 58.715 43.478 0.00 0.00 43.02 4.26
221 222 2.203224 TTCCGGGTTGCTTCGCAA 60.203 55.556 0.00 0.00 46.80 4.85
222 223 2.975799 GTTCCGGGTTGCTTCGCA 60.976 61.111 0.00 0.00 36.47 5.10
223 224 4.084888 CGTTCCGGGTTGCTTCGC 62.085 66.667 0.00 0.00 0.00 4.70
224 225 2.356553 TCGTTCCGGGTTGCTTCG 60.357 61.111 0.00 0.00 0.00 3.79
225 226 0.601841 TTCTCGTTCCGGGTTGCTTC 60.602 55.000 0.00 0.00 0.00 3.86
226 227 0.036306 ATTCTCGTTCCGGGTTGCTT 59.964 50.000 0.00 0.00 0.00 3.91
227 228 0.673644 CATTCTCGTTCCGGGTTGCT 60.674 55.000 0.00 0.00 0.00 3.91
228 229 0.672401 TCATTCTCGTTCCGGGTTGC 60.672 55.000 0.00 0.00 0.00 4.17
229 230 1.067142 TCTCATTCTCGTTCCGGGTTG 60.067 52.381 0.00 0.00 0.00 3.77
230 231 1.204941 CTCTCATTCTCGTTCCGGGTT 59.795 52.381 0.00 0.00 0.00 4.11
231 232 0.818296 CTCTCATTCTCGTTCCGGGT 59.182 55.000 0.00 0.00 0.00 5.28
232 233 0.528684 GCTCTCATTCTCGTTCCGGG 60.529 60.000 0.00 0.00 0.00 5.73
233 234 0.173481 TGCTCTCATTCTCGTTCCGG 59.827 55.000 0.00 0.00 0.00 5.14
234 235 1.857217 CATGCTCTCATTCTCGTTCCG 59.143 52.381 0.00 0.00 0.00 4.30
235 236 1.596727 GCATGCTCTCATTCTCGTTCC 59.403 52.381 11.37 0.00 0.00 3.62
236 237 1.257415 CGCATGCTCTCATTCTCGTTC 59.743 52.381 17.13 0.00 0.00 3.95
237 238 1.134995 TCGCATGCTCTCATTCTCGTT 60.135 47.619 17.13 0.00 0.00 3.85
238 239 0.457443 TCGCATGCTCTCATTCTCGT 59.543 50.000 17.13 0.00 0.00 4.18
239 240 0.851495 GTCGCATGCTCTCATTCTCG 59.149 55.000 17.13 0.00 0.00 4.04
240 241 2.126467 GAGTCGCATGCTCTCATTCTC 58.874 52.381 24.68 14.27 0.00 2.87
241 242 1.479730 TGAGTCGCATGCTCTCATTCT 59.520 47.619 26.90 11.89 34.00 2.40
242 243 1.859703 CTGAGTCGCATGCTCTCATTC 59.140 52.381 29.05 14.87 37.54 2.67
243 244 1.937278 CTGAGTCGCATGCTCTCATT 58.063 50.000 29.05 7.93 37.54 2.57
244 245 0.530211 GCTGAGTCGCATGCTCTCAT 60.530 55.000 29.05 9.42 37.54 2.90
245 246 1.153686 GCTGAGTCGCATGCTCTCA 60.154 57.895 27.91 27.91 36.85 3.27
246 247 1.141449 AGCTGAGTCGCATGCTCTC 59.859 57.895 23.60 23.60 34.30 3.20
247 248 1.153608 CAGCTGAGTCGCATGCTCT 60.154 57.895 17.13 13.72 34.30 4.09
248 249 2.172372 CCAGCTGAGTCGCATGCTC 61.172 63.158 17.39 7.33 31.52 4.26
249 250 2.125229 CCAGCTGAGTCGCATGCT 60.125 61.111 17.39 0.00 33.27 3.79
250 251 3.200593 CCCAGCTGAGTCGCATGC 61.201 66.667 17.39 7.91 0.00 4.06
251 252 1.376424 AACCCAGCTGAGTCGCATG 60.376 57.895 17.39 0.00 0.00 4.06
252 253 1.376424 CAACCCAGCTGAGTCGCAT 60.376 57.895 17.39 0.00 0.00 4.73
253 254 2.031012 CAACCCAGCTGAGTCGCA 59.969 61.111 17.39 0.00 0.00 5.10
254 255 2.743928 CCAACCCAGCTGAGTCGC 60.744 66.667 17.39 0.00 0.00 5.19
255 256 2.046892 CCCAACCCAGCTGAGTCG 60.047 66.667 17.39 0.00 0.00 4.18
256 257 2.360475 GCCCAACCCAGCTGAGTC 60.360 66.667 17.39 0.00 0.00 3.36
257 258 4.335647 CGCCCAACCCAGCTGAGT 62.336 66.667 17.39 4.69 0.00 3.41
258 259 3.965539 CTCGCCCAACCCAGCTGAG 62.966 68.421 17.39 3.79 0.00 3.35
259 260 4.020617 CTCGCCCAACCCAGCTGA 62.021 66.667 17.39 0.00 0.00 4.26
260 261 3.850098 AACTCGCCCAACCCAGCTG 62.850 63.158 6.78 6.78 0.00 4.24
261 262 3.570212 AACTCGCCCAACCCAGCT 61.570 61.111 0.00 0.00 0.00 4.24
262 263 3.365265 CAACTCGCCCAACCCAGC 61.365 66.667 0.00 0.00 0.00 4.85
263 264 1.966451 GTCAACTCGCCCAACCCAG 60.966 63.158 0.00 0.00 0.00 4.45
264 265 2.112297 GTCAACTCGCCCAACCCA 59.888 61.111 0.00 0.00 0.00 4.51
292 293 2.094675 AGCTTAAATCGCCATTGCAGT 58.905 42.857 0.00 0.00 37.32 4.40
293 294 2.855963 CAAGCTTAAATCGCCATTGCAG 59.144 45.455 0.00 0.00 37.32 4.41
339 340 2.099141 ACGACTTCATCCCACACATG 57.901 50.000 0.00 0.00 0.00 3.21
343 344 0.172578 CGCTACGACTTCATCCCACA 59.827 55.000 0.00 0.00 0.00 4.17
405 1839 2.671963 GGCGAAACCACCACCCTC 60.672 66.667 0.00 0.00 38.86 4.30
468 1905 0.603569 AGGCGATGACAACGACTCTT 59.396 50.000 7.79 0.00 46.60 2.85
473 1910 0.250124 ACCAAAGGCGATGACAACGA 60.250 50.000 9.52 0.00 0.00 3.85
479 1916 2.302260 TGTGAAAACCAAAGGCGATGA 58.698 42.857 0.00 0.00 0.00 2.92
534 1971 9.817809 ATCTTATATGCAGACTAAAGAAACGAA 57.182 29.630 6.68 0.00 0.00 3.85
535 1972 9.817809 AATCTTATATGCAGACTAAAGAAACGA 57.182 29.630 6.68 0.00 0.00 3.85
539 1976 9.905713 ACCAAATCTTATATGCAGACTAAAGAA 57.094 29.630 6.68 0.00 0.00 2.52
540 1977 9.547753 GACCAAATCTTATATGCAGACTAAAGA 57.452 33.333 5.41 5.41 0.00 2.52
541 1978 9.330063 TGACCAAATCTTATATGCAGACTAAAG 57.670 33.333 0.00 0.00 0.00 1.85
542 1979 9.679661 TTGACCAAATCTTATATGCAGACTAAA 57.320 29.630 0.00 0.00 0.00 1.85
543 1980 9.679661 TTTGACCAAATCTTATATGCAGACTAA 57.320 29.630 0.00 0.00 0.00 2.24
544 1981 9.330063 CTTTGACCAAATCTTATATGCAGACTA 57.670 33.333 0.00 0.00 0.00 2.59
545 1982 7.831193 ACTTTGACCAAATCTTATATGCAGACT 59.169 33.333 0.00 0.00 0.00 3.24
546 1983 7.989826 ACTTTGACCAAATCTTATATGCAGAC 58.010 34.615 0.00 0.00 0.00 3.51
547 1984 7.828717 TGACTTTGACCAAATCTTATATGCAGA 59.171 33.333 0.00 0.00 0.00 4.26
548 1985 7.988737 TGACTTTGACCAAATCTTATATGCAG 58.011 34.615 0.00 0.00 0.00 4.41
549 1986 7.936496 TGACTTTGACCAAATCTTATATGCA 57.064 32.000 0.00 0.00 0.00 3.96
550 1987 9.076596 GTTTGACTTTGACCAAATCTTATATGC 57.923 33.333 0.00 0.00 35.14 3.14
751 2188 9.862149 ACTCCCTCTGTTTCTTTTTAATCTTTA 57.138 29.630 0.00 0.00 0.00 1.85
752 2189 8.768501 ACTCCCTCTGTTTCTTTTTAATCTTT 57.231 30.769 0.00 0.00 0.00 2.52
758 2195 8.856103 CCAAAATACTCCCTCTGTTTCTTTTTA 58.144 33.333 0.00 0.00 0.00 1.52
759 2196 7.344612 ACCAAAATACTCCCTCTGTTTCTTTTT 59.655 33.333 0.00 0.00 0.00 1.94
760 2197 6.839134 ACCAAAATACTCCCTCTGTTTCTTTT 59.161 34.615 0.00 0.00 0.00 2.27
761 2198 6.373759 ACCAAAATACTCCCTCTGTTTCTTT 58.626 36.000 0.00 0.00 0.00 2.52
762 2199 5.953571 ACCAAAATACTCCCTCTGTTTCTT 58.046 37.500 0.00 0.00 0.00 2.52
763 2200 5.584551 ACCAAAATACTCCCTCTGTTTCT 57.415 39.130 0.00 0.00 0.00 2.52
764 2201 5.768164 TGAACCAAAATACTCCCTCTGTTTC 59.232 40.000 0.00 0.00 0.00 2.78
765 2202 5.701224 TGAACCAAAATACTCCCTCTGTTT 58.299 37.500 0.00 0.00 0.00 2.83
766 2203 5.319043 TGAACCAAAATACTCCCTCTGTT 57.681 39.130 0.00 0.00 0.00 3.16
767 2204 4.993705 TGAACCAAAATACTCCCTCTGT 57.006 40.909 0.00 0.00 0.00 3.41
768 2205 6.447162 GTTTTGAACCAAAATACTCCCTCTG 58.553 40.000 7.93 0.00 43.66 3.35
769 2206 6.650427 GTTTTGAACCAAAATACTCCCTCT 57.350 37.500 7.93 0.00 43.66 3.69
793 2230 3.157087 AGAAATTAAGCACACCACCCAG 58.843 45.455 0.00 0.00 0.00 4.45
799 2236 4.260784 CGCTCCATAGAAATTAAGCACACC 60.261 45.833 0.00 0.00 0.00 4.16
800 2237 4.786609 GCGCTCCATAGAAATTAAGCACAC 60.787 45.833 0.00 0.00 0.00 3.82
801 2238 3.312421 GCGCTCCATAGAAATTAAGCACA 59.688 43.478 0.00 0.00 0.00 4.57
802 2239 3.304057 GGCGCTCCATAGAAATTAAGCAC 60.304 47.826 7.64 0.00 0.00 4.40
803 2240 2.878406 GGCGCTCCATAGAAATTAAGCA 59.122 45.455 7.64 0.00 0.00 3.91
804 2241 2.096218 CGGCGCTCCATAGAAATTAAGC 60.096 50.000 7.64 0.00 0.00 3.09
805 2242 3.131396 ACGGCGCTCCATAGAAATTAAG 58.869 45.455 6.90 0.00 0.00 1.85
837 2274 0.466543 AACGTACAGCTGGTTGGTGA 59.533 50.000 19.93 0.00 46.27 4.02
851 2288 7.534578 CGCAATTATTGAAGTTTACCAAACGTA 59.465 33.333 9.36 0.00 45.88 3.57
1266 2715 2.431430 CTGCGCTCGAGCTTGTGA 60.431 61.111 32.88 12.28 39.32 3.58
1551 3021 1.262417 TCAAGTCCACTCCATACGCA 58.738 50.000 0.00 0.00 0.00 5.24
1568 3038 5.835819 AAGCTACTAGGAGTAGATGCATTCA 59.164 40.000 16.12 0.00 45.68 2.57
1580 3050 2.312390 GGAGGGACAAGCTACTAGGAG 58.688 57.143 0.00 0.00 0.00 3.69
1581 3051 1.409802 CGGAGGGACAAGCTACTAGGA 60.410 57.143 0.00 0.00 0.00 2.94
1582 3052 1.033574 CGGAGGGACAAGCTACTAGG 58.966 60.000 0.00 0.00 0.00 3.02
1583 3053 1.765230 ACGGAGGGACAAGCTACTAG 58.235 55.000 0.00 0.00 0.00 2.57
1584 3054 2.648059 GTACGGAGGGACAAGCTACTA 58.352 52.381 0.00 0.00 0.00 1.82
1585 3055 1.472188 GTACGGAGGGACAAGCTACT 58.528 55.000 0.00 0.00 0.00 2.57
1597 3067 5.695816 AGAAGTAGAACTATAGCGTACGGAG 59.304 44.000 18.39 0.00 0.00 4.63
1693 3167 0.310854 CGGCCAACAAACTGGACTTC 59.689 55.000 2.24 0.00 43.07 3.01
1713 3187 9.331282 GAGTTCTGGTTTATTGTATAATCAGCT 57.669 33.333 0.00 0.00 0.00 4.24
1715 3189 9.838339 AGGAGTTCTGGTTTATTGTATAATCAG 57.162 33.333 0.00 0.00 0.00 2.90
1735 3209 8.839310 ATTCTATATGTACGTACGTAGGAGTT 57.161 34.615 27.48 15.52 31.81 3.01
1794 3271 2.084546 ACAAAGGAGCGATGCTTTACC 58.915 47.619 19.84 0.00 39.88 2.85
1798 3275 1.896220 TCAACAAAGGAGCGATGCTT 58.104 45.000 0.01 0.01 39.88 3.91
1799 3276 1.808945 CTTCAACAAAGGAGCGATGCT 59.191 47.619 0.00 0.00 43.88 3.79
1810 3295 7.416022 CAAATTTAAGCAATGCCTTCAACAAA 58.584 30.769 0.00 0.00 0.00 2.83
1815 3300 4.897140 AGCAAATTTAAGCAATGCCTTCA 58.103 34.783 0.00 0.00 37.73 3.02
1828 3313 9.773328 CTTGAAGAATATGTTCGAGCAAATTTA 57.227 29.630 5.91 0.00 39.38 1.40
1829 3314 8.514594 TCTTGAAGAATATGTTCGAGCAAATTT 58.485 29.630 5.91 0.19 39.38 1.82
1830 3315 8.044060 TCTTGAAGAATATGTTCGAGCAAATT 57.956 30.769 5.91 0.00 39.38 1.82
1831 3316 7.615582 TCTTGAAGAATATGTTCGAGCAAAT 57.384 32.000 5.91 0.00 39.38 2.32
1832 3317 7.334171 TCATCTTGAAGAATATGTTCGAGCAAA 59.666 33.333 5.91 0.00 39.38 3.68
1833 3318 6.818142 TCATCTTGAAGAATATGTTCGAGCAA 59.182 34.615 5.91 0.00 39.38 3.91
1834 3319 6.340522 TCATCTTGAAGAATATGTTCGAGCA 58.659 36.000 3.86 3.86 39.38 4.26
1835 3320 6.834959 TCATCTTGAAGAATATGTTCGAGC 57.165 37.500 0.00 0.00 39.38 5.03
1836 3321 9.483062 GTTTTCATCTTGAAGAATATGTTCGAG 57.517 33.333 0.00 8.27 37.70 4.04
1837 3322 8.450964 GGTTTTCATCTTGAAGAATATGTTCGA 58.549 33.333 0.00 0.00 37.70 3.71
1838 3323 8.454106 AGGTTTTCATCTTGAAGAATATGTTCG 58.546 33.333 0.00 0.00 37.70 3.95
1847 3332 8.630037 GGACTTTTTAGGTTTTCATCTTGAAGA 58.370 33.333 0.00 0.00 37.70 2.87
1848 3333 8.413229 TGGACTTTTTAGGTTTTCATCTTGAAG 58.587 33.333 0.00 0.00 37.70 3.02
1849 3334 8.299990 TGGACTTTTTAGGTTTTCATCTTGAA 57.700 30.769 0.00 0.00 34.03 2.69
1850 3335 7.889873 TGGACTTTTTAGGTTTTCATCTTGA 57.110 32.000 0.00 0.00 0.00 3.02
1851 3336 7.599998 CCATGGACTTTTTAGGTTTTCATCTTG 59.400 37.037 5.56 0.00 0.00 3.02
1852 3337 7.508977 TCCATGGACTTTTTAGGTTTTCATCTT 59.491 33.333 11.44 0.00 0.00 2.40
1853 3338 7.010160 TCCATGGACTTTTTAGGTTTTCATCT 58.990 34.615 11.44 0.00 0.00 2.90
1854 3339 7.227049 TCCATGGACTTTTTAGGTTTTCATC 57.773 36.000 11.44 0.00 0.00 2.92
1855 3340 6.295292 GCTCCATGGACTTTTTAGGTTTTCAT 60.295 38.462 11.44 0.00 0.00 2.57
1856 3341 5.010617 GCTCCATGGACTTTTTAGGTTTTCA 59.989 40.000 11.44 0.00 0.00 2.69
1857 3342 5.010617 TGCTCCATGGACTTTTTAGGTTTTC 59.989 40.000 11.44 0.00 0.00 2.29
1858 3343 4.898861 TGCTCCATGGACTTTTTAGGTTTT 59.101 37.500 11.44 0.00 0.00 2.43
1859 3344 4.479158 TGCTCCATGGACTTTTTAGGTTT 58.521 39.130 11.44 0.00 0.00 3.27
1860 3345 4.082125 CTGCTCCATGGACTTTTTAGGTT 58.918 43.478 11.44 0.00 0.00 3.50
1861 3346 3.690460 CTGCTCCATGGACTTTTTAGGT 58.310 45.455 11.44 0.00 0.00 3.08
1862 3347 2.424956 GCTGCTCCATGGACTTTTTAGG 59.575 50.000 11.44 0.00 0.00 2.69
1863 3348 2.424956 GGCTGCTCCATGGACTTTTTAG 59.575 50.000 11.44 0.00 34.01 1.85
1864 3349 2.446435 GGCTGCTCCATGGACTTTTTA 58.554 47.619 11.44 0.00 34.01 1.52
1865 3350 1.260544 GGCTGCTCCATGGACTTTTT 58.739 50.000 11.44 0.00 34.01 1.94
1866 3351 0.962356 CGGCTGCTCCATGGACTTTT 60.962 55.000 11.44 0.00 34.01 2.27
1867 3352 1.377725 CGGCTGCTCCATGGACTTT 60.378 57.895 11.44 0.00 34.01 2.66
1868 3353 2.270205 CGGCTGCTCCATGGACTT 59.730 61.111 11.44 0.00 34.01 3.01
1869 3354 2.685017 TCGGCTGCTCCATGGACT 60.685 61.111 11.44 0.00 34.01 3.85
1870 3355 2.512515 GTCGGCTGCTCCATGGAC 60.513 66.667 11.44 8.83 34.01 4.02
1871 3356 2.871795 TAGGTCGGCTGCTCCATGGA 62.872 60.000 15.27 15.27 34.01 3.41
1872 3357 2.374830 CTAGGTCGGCTGCTCCATGG 62.375 65.000 4.97 4.97 34.01 3.66
1873 3358 1.068753 CTAGGTCGGCTGCTCCATG 59.931 63.158 0.00 0.00 34.01 3.66
1874 3359 2.801631 GCTAGGTCGGCTGCTCCAT 61.802 63.158 0.00 0.00 34.01 3.41
1875 3360 3.461773 GCTAGGTCGGCTGCTCCA 61.462 66.667 0.00 0.00 34.01 3.86
1876 3361 4.228567 GGCTAGGTCGGCTGCTCC 62.229 72.222 0.00 0.25 0.00 4.70
1877 3362 3.438017 CTGGCTAGGTCGGCTGCTC 62.438 68.421 0.00 0.00 0.00 4.26
1878 3363 3.465403 CTGGCTAGGTCGGCTGCT 61.465 66.667 0.00 0.00 0.00 4.24
1880 3365 4.537433 GGCTGGCTAGGTCGGCTG 62.537 72.222 0.00 0.00 39.76 4.85
1913 3400 1.226717 GAGGTAGAGAACGCTGGCG 60.227 63.158 13.56 13.56 46.03 5.69
1914 3401 1.142097 GGAGGTAGAGAACGCTGGC 59.858 63.158 0.00 0.00 0.00 4.85
1915 3402 1.817209 GGGAGGTAGAGAACGCTGG 59.183 63.158 0.00 0.00 0.00 4.85
1958 3445 1.987855 CCTAAGGCCACCGGAGACA 60.988 63.158 9.46 0.00 0.00 3.41
2014 3501 2.572104 AGATCTAAAAACGGTGCCCTCT 59.428 45.455 0.00 0.00 0.00 3.69
2071 3560 4.117661 GCCGCCGTCTCGTCTTCT 62.118 66.667 0.00 0.00 0.00 2.85
2144 3646 3.941188 CACCTCCACACGCCCACT 61.941 66.667 0.00 0.00 0.00 4.00
2300 3802 1.245732 AGTCGTCGTGCTAAAGTCCT 58.754 50.000 0.00 0.00 0.00 3.85
2305 3807 0.387622 CGGGAAGTCGTCGTGCTAAA 60.388 55.000 0.00 0.00 0.00 1.85
2371 3873 2.883730 GAACGCGCCGCTGTCATA 60.884 61.111 5.73 0.00 0.00 2.15
2403 3907 2.286872 CCACCTAGTGACGACTACGAT 58.713 52.381 0.00 0.00 43.06 3.73
2405 3909 1.396301 GACCACCTAGTGACGACTACG 59.604 57.143 0.00 0.00 45.75 3.51
2534 4038 3.196254 GCATCCAACCACCAAAGATCAAT 59.804 43.478 0.00 0.00 0.00 2.57
2537 4041 1.133025 CGCATCCAACCACCAAAGATC 59.867 52.381 0.00 0.00 0.00 2.75
2539 4043 0.893270 CCGCATCCAACCACCAAAGA 60.893 55.000 0.00 0.00 0.00 2.52
2540 4044 1.178534 ACCGCATCCAACCACCAAAG 61.179 55.000 0.00 0.00 0.00 2.77
2541 4045 0.110678 TACCGCATCCAACCACCAAA 59.889 50.000 0.00 0.00 0.00 3.28
2542 4046 0.110678 TTACCGCATCCAACCACCAA 59.889 50.000 0.00 0.00 0.00 3.67
2543 4047 0.606944 GTTACCGCATCCAACCACCA 60.607 55.000 0.00 0.00 0.00 4.17
2544 4048 0.606944 TGTTACCGCATCCAACCACC 60.607 55.000 0.00 0.00 0.00 4.61
2545 4049 1.240256 TTGTTACCGCATCCAACCAC 58.760 50.000 0.00 0.00 0.00 4.16
2555 4059 1.442017 CAAGCGCCTTTGTTACCGC 60.442 57.895 2.29 0.00 46.14 5.68
2558 4062 3.384702 GCTCAAGCGCCTTTGTTAC 57.615 52.632 2.29 0.00 0.00 2.50
2581 4085 1.202098 ACAACAACGCCTTCACGAAAC 60.202 47.619 0.00 0.00 36.70 2.78
2586 4090 2.096819 TCTTCAACAACAACGCCTTCAC 59.903 45.455 0.00 0.00 0.00 3.18
2588 4092 3.105937 GTTCTTCAACAACAACGCCTTC 58.894 45.455 0.00 0.00 32.14 3.46
2592 4099 2.098870 GACGTTCTTCAACAACAACGC 58.901 47.619 3.11 0.00 44.29 4.84
2625 4132 2.440409 GCACCAACCATCTCTTGACAT 58.560 47.619 0.00 0.00 0.00 3.06
2656 4164 9.908152 ATCAACATCGATCGACAAACTAATATA 57.092 29.630 22.06 0.00 0.00 0.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.